# geneInfo

ensembl_gene_id: Amir_0001
symbol: dnaA
gene_biotype: protein_coding
description:
  Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.


ensembl_gene_id: Amir_0002
symbol: Amir_0002
gene_biotype: protein_coding
description:
  DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]


ensembl_gene_id: Amir_0003
symbol: Amir_0003
gene_biotype: protein_coding
description:
  TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 6-phosphogluconate dehydrogenase domain protein; NADP oxidoreductase coenzyme F420-dependent; KEGG: dde:Dde_3470 6-phosphogluconate dehydrogenase- like protein.


ensembl_gene_id: Amir_0004
symbol: recF
gene_biotype: protein_coding
description:
  DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.


ensembl_gene_id: Amir_0006
symbol: gyrB
gene_biotype: protein_coding
description:
  DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: Amir_0007
symbol: gyrA
gene_biotype: protein_coding
description:
  DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: Amir_0013
symbol: Amir_0013
gene_biotype: protein_coding
description:
  Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.


ensembl_gene_id: Amir_0017
symbol: Amir_0017
gene_biotype: protein_coding
description:
  TIGRFAM: sortase family protein; PFAM: peptidase C60 sortase A and B; KEGG: sus:Acid_5377 sortase family protein.


ensembl_gene_id: Amir_0019
symbol: Amir_0019
gene_biotype: protein_coding
description:
  Ferredoxin--NADP(+) reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ade:Adeh_3296 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Amir_0020
symbol: Amir_0020
gene_biotype: protein_coding
description:
  TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: swi:Swit_3227 anthranilate synthase, component II.


ensembl_gene_id: Amir_0021
symbol: Amir_0021
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; PASTA domain containing protein; SMART: serine/threonine protein kinase; tyrosine protein kinase; PASTA domain containing protein; KEGG: bha:BH2504 serine/threonine protein kinase.


ensembl_gene_id: Amir_0022
symbol: Amir_0022
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: ade:Adeh_3649 serine/threonine protein kinase.


ensembl_gene_id: Amir_0023
symbol: Amir_0023
gene_biotype: protein_coding
description:
  Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; KEGG: penicillin-binding protein 2; K05515 penicillin binding protein 2.


ensembl_gene_id: Amir_0024
symbol: Amir_0024
gene_biotype: protein_coding
description:
  PFAM: cell cycle protein; KEGG: bcb:BCB4264_A4012 stage V sporulation protein E; Belongs to the SEDS family.


ensembl_gene_id: Amir_0025
symbol: Amir_0025
gene_biotype: protein_coding
description:
  PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: tgr:Tgr7_0952 protein phosphatase 2C-like protein.


ensembl_gene_id: Amir_0026
symbol: Amir_0026
gene_biotype: protein_coding
description:
  FHA domain containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: mxa:MXAN_4649 FHA domain protein.


ensembl_gene_id: Amir_0027
symbol: Amir_0027
gene_biotype: protein_coding
description:
  FHA domain containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: eba:ebA2155 hypothetical protein.


ensembl_gene_id: Amir_0030
symbol: Amir_0030
gene_biotype: protein_coding
description:
  KEGG: bur:Bcep18194_B3008 FAD-linked oxidoreductase; TIGRFAM: FAD-linked oxidoreductase; PFAM: D-arabinono-14-lactone oxidase; FAD linked oxidase domain protein.


ensembl_gene_id: Amir_0031
symbol: Amir_0031
gene_biotype: protein_coding
description:
  PFAM: alanine racemase domain protein; KEGG: bur:Bcep18194_B3007 amino acid aldolase or racemase-like.


ensembl_gene_id: Amir_0033
symbol: Amir_0033
gene_biotype: protein_coding
description:
  TIGRFAM: beta-galactosidase; PFAM: glycoside hydrolase family 1; KEGG: hch:HCH_06907 beta-glucosidase/6-phospho-beta- glucosidase/beta-galactosidase; Belongs to the glycosyl hydrolase 1 family.


ensembl_gene_id: Amir_0034
symbol: Amir_0034
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: ccs:CCNA_02400 transporter, major facilitator superfamily.


ensembl_gene_id: Amir_0035
symbol: Amir_0035
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Amir_0037
symbol: Amir_0037
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; Tetratricopeptide domain protein; KEGG: hypothetical protein.


ensembl_gene_id: Amir_0038
symbol: Amir_0038
gene_biotype: protein_coding
description:
  PFAM: aminoglycoside phosphotransferase; KEGG: bcz:BCZK4351 homoserine kinase type II (protein kinase fold).


ensembl_gene_id: Amir_0044
symbol: Amir_0044
gene_biotype: protein_coding
description:
  TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: ppw:PputW619_2676 choline/carnitine/betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family.


ensembl_gene_id: Amir_0047
symbol: Amir_0047
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: bac:BamMC406_2467 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Amir_0049
symbol: Amir_0049
gene_biotype: protein_coding
description:
  Gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; KEGG: bbt:BBta_2852 putative gamma- glutamyltranspeptidase.


ensembl_gene_id: Amir_0055
symbol: Amir_0055
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 2; Methyltransferase type 12; Methyltransferase type 11; KEGG: ppf:Pput_3926 glycosyl transferase family protein.


ensembl_gene_id: Amir_0058
symbol: Amir_0058
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: swi:Swit_4011 methyltransferase type 12.


ensembl_gene_id: Amir_0060
symbol: Amir_0060
gene_biotype: protein_coding
description:
  PFAM: OsmC family protein; KEGG: mlo:mlr4254 osmotically inducible protein C, putative ATP/GTP binding protein.


ensembl_gene_id: Amir_0062
symbol: Amir_0062
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: afw:Anae109_0839 ECF subfamily RNA polymerase sigma-24 factor.


ensembl_gene_id: Amir_0064
symbol: Amir_0064
gene_biotype: protein_coding
description:
  Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: signal transduction histidine kinase, LytS; K07704 two-component system, LytT family, sensor histidine kinase LytS.


ensembl_gene_id: Amir_0067
symbol: Amir_0067
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: gur:Gura_2791 LytTR family two component transcriptional regulator.


ensembl_gene_id: Amir_0069
symbol: Amir_0069
gene_biotype: protein_coding
description:
  PFAM: Na+/solute symporter; KEGG: dac:Daci_5957 SSS family solute/sodium (Na+) symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: Amir_0071
symbol: Amir_0071
gene_biotype: protein_coding
description:
  TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: bca:BCE_1726 sodium/solute symporter family protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: Amir_0072
symbol: Amir_0072
gene_biotype: protein_coding
description:
  TIGRFAM: DNA binding domain protein, excisionase family; KEGG: maq:Maqu_3385 DNA binding domain-containing protein.


ensembl_gene_id: Amir_0074
symbol: Amir_0074
gene_biotype: protein_coding
description:
  PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: rfr:Rfer_3913 rhodanese-like protein.


ensembl_gene_id: Amir_0078
symbol: Amir_0078
gene_biotype: protein_coding
description:
  PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: gbm:Gbem_3150 glycerophosphoryl diester phosphodiesterase.


ensembl_gene_id: Amir_0090
symbol: Amir_0090
gene_biotype: protein_coding
description:
  Fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF1969; KEGG: jan:Jann_1436 fumarylacetoacetate hydrolase.


ensembl_gene_id: Amir_0091
symbol: Amir_0091
gene_biotype: protein_coding
description:
  Transcriptional regulator, IclR family; PFAM: regulatory protein IclR; SMART: regulatory protein IclR; KEGG: dac:Daci_0951 IclR family transcriptional regulator.


ensembl_gene_id: Amir_0092
symbol: Amir_0092
gene_biotype: protein_coding
description:
  PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: bsu:BSU38760 cytochrome bd ubiquinol oxidase (subunit I).


ensembl_gene_id: Amir_0093
symbol: Amir_0093
gene_biotype: protein_coding
description:
  KEGG: glo:Glov_1209 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II.


ensembl_gene_id: Amir_0095
symbol: Amir_0095
gene_biotype: protein_coding
description:
  KEGG: bpt:Bpet3362 HlyB/MsbA family ABC transporter; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.


ensembl_gene_id: Amir_0096
symbol: Amir_0096
gene_biotype: protein_coding
description:
  GAF sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerization and phosphoacceptor region; GAF domain protein; SMART: GAF domain protein; ATP-binding region ATPase domain protein; KEGG: pna:Pnap_3765 multi-sensor signal transduction histidine kinase.


ensembl_gene_id: Amir_0097
symbol: Amir_0097
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: xca:xccb100_3213 two-component system regulatory protein.


ensembl_gene_id: Amir_0100
symbol: pheA
gene_biotype: protein_coding
description:
  PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; KEGG: ank:AnaeK_2061 prephenate dehydratase.


ensembl_gene_id: Amir_0101
symbol: Amir_0101
gene_biotype: protein_coding
description:
  PFAM: Phosphoglycerate mutase; KEGG: lch:Lcho_3955 phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family.


ensembl_gene_id: Amir_0110
symbol: Amir_0110
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 31; Carbohydrate binding family 6; Ricin B lectin; SMART: cellulose binding type IV; Ricin B lectin; KEGG: aba:Acid345_1956 glycoside hydrolase, family 31.


ensembl_gene_id: Amir_0118
symbol: serS
gene_biotype: protein_coding
description:
  seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).


ensembl_gene_id: Amir_0119
symbol: Amir_0119
gene_biotype: protein_coding
description:
  PFAM: FAD dependent oxidoreductase; HI0933 family protein; KEGG: sus:Acid_5855 FAD dependent oxidoreductase.


ensembl_gene_id: Amir_0121
symbol: Amir_0121
gene_biotype: protein_coding
description:
  TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; KEGG: mno:Mnod_7133 Cof-like hydrolase.


ensembl_gene_id: Amir_0123
symbol: Amir_0123
gene_biotype: protein_coding
description:
  Ribonuclease III; PFAM: glycosyl transferase family 2; KEGG: rme:Rmet_6128 glycosyl transferase, family 2.


ensembl_gene_id: Amir_0128
symbol: Amir_0128
gene_biotype: protein_coding
description:
  KEGG: gox:GOX1488 UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like.


ensembl_gene_id: Amir_0133
symbol: Amir_0133
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbc:CbuK_1550 polysaccharide export ATP- binding protein.


ensembl_gene_id: Amir_0136
symbol: Amir_0136
gene_biotype: protein_coding
description:
  TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V; KEGG: mlo:mlr0102 aminotransferase.


ensembl_gene_id: Amir_0139
symbol: Amir_0139
gene_biotype: protein_coding
description:
  TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: hypothetical protein.


ensembl_gene_id: Amir_0141
symbol: Amir_0141
gene_biotype: protein_coding
description:
  Aminopeptidase Y; PFAM: peptidase M28; protease-associated PA domain protein; KEGG: pag:PLES_21241 putative aminopeptidase.


ensembl_gene_id: Amir_0142
symbol: Amir_0142
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function zinc metallopeptidase putative; KEGG: rfr:Rfer_2725 protein of unknown function, zinc metallopeptidase putative.


ensembl_gene_id: Amir_0143
symbol: Amir_0143
gene_biotype: protein_coding
description:
  PFAM: 5'-Nucleotidase domain protein; metallophosphoesterase; KEGG: scl:sce7039 putative 5'-nucleotidase family protein; Belongs to the 5'-nucleotidase family.


ensembl_gene_id: Amir_0144
symbol: Amir_0144
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: acp:A2cp1_4259 transcriptional regulator, MarR family.


ensembl_gene_id: Amir_0146
symbol: pat
gene_biotype: protein_coding
description:
  Histidinol-phosphate aminotransferase; May catalyze the transamination reaction in phenylalanine biosynthesis; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Amir_0152
symbol: Amir_0152
gene_biotype: protein_coding
description:
  TIGRFAM: acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase; KEGG: sil:SPO1959 acetoacetyl-CoA synthetase.


ensembl_gene_id: Amir_0155
symbol: Amir_0155
gene_biotype: protein_coding
description:
  TIGRFAM: LPXTG-motif cell wall anchor domain protein; KEGG: bur:Bcep18194_A5663 DNA translocase FtsK.


ensembl_gene_id: Amir_0156
symbol: Amir_0156
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: hha:Hhal_0769 UDP-glucose 4-epimerase.


ensembl_gene_id: Amir_0160
symbol: Amir_0160
gene_biotype: protein_coding
description:
  PFAM: C-5 cytosine-specific DNA methylase; KEGG: nmc:NMC1992 modification methylase (cytosine- specific DNA methylase); Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.


ensembl_gene_id: Amir_0164
symbol: Amir_0164
gene_biotype: protein_coding
description:
  TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: gbm:Gbem_1434 acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Amir_0169
symbol: Amir_0169
gene_biotype: protein_coding
description:
  Amidohydrolase; KEGG: sal:Sala_2314 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerization domain protein.


ensembl_gene_id: Amir_0171
symbol: tadA
gene_biotype: protein_coding
description:
  CMP/dCMP deaminase zinc-binding; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: Amir_0172
symbol: Amir_0172
gene_biotype: protein_coding
description:
  PFAM: integrase family protein; KEGG: sus:Acid_5994 phage integrase family protein; Belongs to the 'phage' integrase family.


ensembl_gene_id: Amir_0185
symbol: Amir_0185
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: protein of unknown function DUF323; SMART: helix-turn-helix domain protein; KEGG: scl:sce5487 protein kinase.


ensembl_gene_id: Amir_0189
symbol: Amir_0189
gene_biotype: protein_coding
description:
  PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: bcr:BCAH187_E0055 peptidase C14 caspase catalytic subunit P20.


ensembl_gene_id: Amir_0191
symbol: Amir_0191
gene_biotype: protein_coding
description:
  PFAM: protein-L-isoaspartate(D-aspartate) O- methyltransferase; Methyltransferase type 11; KEGG: bmj:BMULJ_02352 protein-L-isoaspartate (D- aspartate) O-methyltransferase.


ensembl_gene_id: Amir_0194
symbol: Amir_0194
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Tetratricopeptide TPR_4; SMART: helix-turn-helix domain protein; KEGG: eca:ECA3401 putative phage regulatory protein.


ensembl_gene_id: Amir_0195
symbol: Amir_0195
gene_biotype: protein_coding
description:
  PFAM: Endonuclease/exonuclease/phosphatase; KEGG: scl:sce0688 endonuclease/exonuclease/phosphatase family protein.


ensembl_gene_id: Amir_0198
symbol: Amir_0198
gene_biotype: protein_coding
description:
  PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: pca:Pcar_1336 putative methyl-accepting chemotaxis protein (MCP).


ensembl_gene_id: Amir_0199
symbol: Amir_0199
gene_biotype: protein_coding
description:
  PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: aba:Acid345_1672 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: Amir_0201
symbol: dnaX
gene_biotype: protein_coding
description:
  DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.


ensembl_gene_id: Amir_0202
symbol: Amir_0202
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.


ensembl_gene_id: Amir_0203
symbol: recR
gene_biotype: protein_coding
description:
  Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.


ensembl_gene_id: Amir_0205
symbol: Amir_0205
gene_biotype: protein_coding
description:
  Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; TPR repeat- containing protein; Tetratricopeptide TPR_4; NB-ARC domain protein; transcriptional regulator domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: scl:sce5225 protein kinase.


ensembl_gene_id: Amir_0206
symbol: Amir_0206
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: hap:HAPS_0936 periplasmic dipeptide transport protein DppA.


ensembl_gene_id: Amir_0207
symbol: Amir_0207
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pde:Pden_1670 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Amir_0208
symbol: Amir_0208
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH3642 dipeptide ABC transporter (permease).


ensembl_gene_id: Amir_0209
symbol: Amir_0209
gene_biotype: protein_coding
description:
  KEGG: bja:bll2870 ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Amir_0210
symbol: Amir_0210
gene_biotype: protein_coding
description:
  Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: bja:blr1357 peptide ABC transporter ATP- binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Amir_0213
symbol: leuA
gene_biotype: protein_coding
description:
  2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.


ensembl_gene_id: Amir_0217
symbol: Amir_0217
gene_biotype: protein_coding
description:
  KEGG: tgr:Tgr7_1290 aspartate kinase; TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; Belongs to the aspartokinase family.


ensembl_gene_id: Amir_0218
symbol: asd
gene_biotype: protein_coding
description:
  Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.


ensembl_gene_id: Amir_0219
symbol: Amir_0219
gene_biotype: protein_coding
description:
  PFAM: carbohydrate kinase FGGY; KEGG: bcb:BCB4264_A2253 gluconate kinase; Belongs to the FGGY kinase family.


ensembl_gene_id: Amir_0220
symbol: Amir_0220
gene_biotype: protein_coding
description:
  PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: vsa:VSAL_II0614 cold shock-like protein.


ensembl_gene_id: Amir_0224
symbol: Amir_0224
gene_biotype: protein_coding
description:
  PFAM: Ferritin Dps family protein; KEGG: mpo:Mpop_0322 ferritin Dps family protein; Belongs to the Dps family.


ensembl_gene_id: Amir_0227
symbol: Amir_0227
gene_biotype: protein_coding
description:
  PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S15; KEGG: pzu:PHZ_c2763 dipeptidyl aminopeptidase/acylaminoacyl-peptidase.


ensembl_gene_id: Amir_0228
symbol: Amir_0228
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Cyclopropane-fatty- acyl-phospholipid synthase; Methyltransferase type 12; KEGG: hha:Hhal_0984 methyltransferase type 11.


ensembl_gene_id: Amir_0235
symbol: Amir_0235
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 51; PASTA domain containing protein; penicillin-binding protein transpeptidase; SMART: PASTA domain containing protein; KEGG: azc:AZC_0337 penicillin-binding protein 1A.


ensembl_gene_id: Amir_0236
symbol: whiB
gene_biotype: protein_coding
description:
  Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.


ensembl_gene_id: Amir_0251
symbol: Amir_0251
gene_biotype: protein_coding
description:
  KEGG: sus:Acid_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; SMART: DNA polymerase III beta chain.


ensembl_gene_id: Amir_0253
symbol: Amir_0253
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: bbt:BBta_5745 transcriptional regulator.


ensembl_gene_id: Amir_0255
symbol: nth
gene_biotype: protein_coding
description:
  Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.


ensembl_gene_id: Amir_0256
symbol: Amir_0256
gene_biotype: protein_coding
description:
  PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: xop:PXO_04554 thioredoxin.


ensembl_gene_id: Amir_0258
symbol: Amir_0258
gene_biotype: protein_coding
description:
  PFAM: Colicin V production protein; peptidase S1 and S6 chymotrypsin/Hap; KEGG: hypothetical protein.


ensembl_gene_id: Amir_0261
symbol: nhaA
gene_biotype: protein_coding
description:
  Na+/H+ antiporter NhaA; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.


ensembl_gene_id: Amir_0262
symbol: acsA
gene_biotype: protein_coding
description:
  acetate/CoA ligase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.


ensembl_gene_id: Amir_0265
symbol: kynU
gene_biotype: protein_coding
description:
  Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.


ensembl_gene_id: Amir_0266
symbol: kynA
gene_biotype: protein_coding
description:
  Tryptophan 23-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.


ensembl_gene_id: Amir_0267
symbol: Amir_0267
gene_biotype: protein_coding
description:
  PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: bam:Bamb_3888 AsnC family transcriptional regulator.


ensembl_gene_id: Amir_0268
symbol: murQ
gene_biotype: protein_coding
description:
  Glucokinase regulatory-like protein; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate.


ensembl_gene_id: Amir_0269
symbol: Amir_0269
gene_biotype: protein_coding
description:
  Transcriptional regulator, RpiR family; PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; KEGG: reh:H16_B1066 transcriptional regulator.


ensembl_gene_id: Amir_0273
symbol: Amir_0273
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 3 domain protein; KEGG: bha:BH0675 beta-hexosamidase A precursor; Belongs to the glycosyl hydrolase 3 family.


ensembl_gene_id: Amir_0274
symbol: Amir_0274
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase, subfamily IB (PSPase- like); KEGG: pap:PSPA7_0428 hypothetical protein.


ensembl_gene_id: Amir_0278
symbol: Amir_0278
gene_biotype: protein_coding
description:
  PFAM: type II secretion system protein; KEGG: Hcn2; hyperpolarization activated cyclic nucleotide-gated potassium channel 2; K04955 hyperpolarization activated cyclic nucleotide-gated potassium channel 2.


ensembl_gene_id: Amir_0283
symbol: Amir_0283
gene_biotype: protein_coding
description:
  PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: dvu:DVU0256 DEAD-box ATP dependent DNA helicase.


ensembl_gene_id: Amir_0284
symbol: hppA
gene_biotype: protein_coding
description:
  V-type H(+)-translocating pyrophosphatase; Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force.


ensembl_gene_id: Amir_0290
symbol: Amir_0290
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: swi:Swit_0780 branched-chain alpha-keto acid dehydrogenase E2 component.


ensembl_gene_id: Amir_0291
symbol: topA
gene_biotype: protein_coding
description:
  DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]


ensembl_gene_id: Amir_0293
symbol: tmk
gene_biotype: protein_coding
description:
  Major facilitator superfamily MFS_1; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.


ensembl_gene_id: Amir_0296
symbol: Amir_0296
gene_biotype: protein_coding
description:
  PFAM: transport system permease protein; ABC-3 protein; KEGG: bcb:BCB4264_A4637 iron compound ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: Amir_0297
symbol: Amir_0297
gene_biotype: protein_coding
description:
  PFAM: periplasmic binding protein; KEGG: bcb:BCB4264_A4636 iron compound ABC transporter, iron compound-binding protein.


ensembl_gene_id: Amir_0298
symbol: Amir_0298
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ent:Ent638_1120 iron-enterobactin transporter ATP-binding protein.


ensembl_gene_id: Amir_0300
symbol: Amir_0300
gene_biotype: protein_coding
description:
  PFAM: Luciferase-like monooxygenase; KEGG: swi:Swit_1615 coenzyme F420-dependent N5 N10- methylene tetrahydromethanopterin reductase-like protein.


ensembl_gene_id: Amir_0303
symbol: Amir_0303
gene_biotype: protein_coding
description:
  PFAM: nuclease (SNase domain protein); SMART: nuclease (SNase domain protein); KEGG: mno:Mnod_4939 hypothetical protein.


ensembl_gene_id: Amir_0305
symbol: Amir_0305
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: atc:AGR_C_1531 hypothetical protein.


ensembl_gene_id: Amir_0306
symbol: Amir_0306
gene_biotype: protein_coding
description:
  TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: ppg:PputGB1_3285 EmrB/QacA family drug resistance transporter.


ensembl_gene_id: Amir_0307
symbol: ppa
gene_biotype: protein_coding
description:
  Inorganic diphosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.


ensembl_gene_id: Amir_0308
symbol: Amir_0308
gene_biotype: protein_coding
description:
  TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D- alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; KEGG: bpm:BURPS1710b_1102 putative lipoprotein.


ensembl_gene_id: Amir_0310
symbol: tilS
gene_biotype: protein_coding
description:
  tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.


ensembl_gene_id: Amir_0311
symbol: Amir_0311
gene_biotype: protein_coding
description:
  KEGG: spe:Spro_3998 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.


ensembl_gene_id: Amir_0312
symbol: Amir_0312
gene_biotype: protein_coding
description:
  PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: dac:Daci_0766 von Willebrand factor type A.


ensembl_gene_id: Amir_0313
symbol: ftsH
gene_biotype: protein_coding
description:
  ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family.  In the central section; belongs to the AAA ATPase family.


ensembl_gene_id: Amir_0315
symbol: Amir_0315
gene_biotype: protein_coding
description:
  KEGG: afw:Anae109_2337 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS.


ensembl_gene_id: Amir_0316
symbol: Amir_0316
gene_biotype: protein_coding
description:
  Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.


ensembl_gene_id: Amir_0317
symbol: Amir_0317
gene_biotype: protein_coding
description:
  2-amino-4-hydroxy-6-hydroxymethyldihydropteridin epyrophosphokinase; KEGG: mex:Mext_1812 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM:2-amino-4-hydroxy-6-hydroxymethyldihydropter idinepyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin- pyrophosphokinase HPPK.


ensembl_gene_id: Amir_0320
symbol: Amir_0320
gene_biotype: protein_coding
description:
  NADH dehydrogenase (quinone); PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: bcz:BCZK4997 NADH dehydrogenase subunit D; Belongs to the complex I 49 kDa subunit family.


ensembl_gene_id: Amir_0325
symbol: panC
gene_biotype: protein_coding
description:
  Pantoate/beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.


ensembl_gene_id: Amir_0326
symbol: panD
gene_biotype: protein_coding
description:
  Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.


ensembl_gene_id: Amir_0327
symbol: coaX
gene_biotype: protein_coding
description:
  Putative transcriptional acitvator, Baf family; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.


ensembl_gene_id: Amir_0328
symbol: Amir_0328
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mno:Mnod_8065 methyltransferase type 11.


ensembl_gene_id: Amir_0329
symbol: lysS
gene_biotype: protein_coding
description:
  TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: dal:Dalk_1784 lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: Amir_0331
symbol: Amir_0331
gene_biotype: protein_coding
description:
  PFAM: transport system permease protein; KEGG: pde:Pden_3523 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: Amir_0332
symbol: Amir_0332
gene_biotype: protein_coding
description:
  PFAM: transport system permease protein; KEGG: ppg:PputGB1_1806 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: Amir_0333
symbol: Amir_0333
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cvi:CV_2234 enterobactin-iron transport system ATP-binding protein.


ensembl_gene_id: Amir_0335
symbol: Amir_0335
gene_biotype: protein_coding
description:
  PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; UvrB/UvrC protein; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase; KEGG: bha:BH0103 class III stress response-related ATPase; Belongs to the ClpA/ClpB family.


ensembl_gene_id: Amir_0336
symbol: pcp
gene_biotype: protein_coding
description:
  Pyrrolidone-carboxylate peptidase; Removes 5-oxoproline from various penultimate amino acid residues except L-proline; Belongs to the peptidase C15 family.


ensembl_gene_id: Amir_0337
symbol: Amir_0337
gene_biotype: protein_coding
description:
  PFAM: Endonuclease/exonuclease/phosphatase; KEGG: afw:Anae109_1227 endonuclease/exonuclease/phosphatase.


ensembl_gene_id: Amir_0338
symbol: Amir_0338
gene_biotype: protein_coding
description:
  PFAM: Silent information regulator protein Sir2; KEGG: afw:Anae109_4302 silent information regulator protein Sir2.


ensembl_gene_id: Amir_0339
symbol: Amir_0339
gene_biotype: protein_coding
description:
  PFAM: Antibiotic biosynthesis monooxygenase; KEGG: afr:AFE_2662 antibiotic biosynthesis monooxygenase family protein.


ensembl_gene_id: Amir_0340
symbol: Amir_0340
gene_biotype: protein_coding
description:
  PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: mxa:MXAN_0644 peptidase, M1 (aminopeptidase N) family.


ensembl_gene_id: Amir_0343
symbol: Amir_0343
gene_biotype: protein_coding
description:
  PFAM: HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein; KEGG: scl:sce3935 A/G-specific adenine glycosylase.


ensembl_gene_id: Amir_0346
symbol: Amir_0346
gene_biotype: protein_coding
description:
  PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: gox:GOX0577 transcriptional regulator.


ensembl_gene_id: Amir_0347
symbol: Amir_0347
gene_biotype: protein_coding
description:
  Transcriptional regulator, LacI family; KEGG: pen:PSEEN1955 ribose operon repressor RbsR; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI.


ensembl_gene_id: Amir_0348
symbol: Amir_0348
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: oan:Oant_3895 extracellular solute-binding protein family 1.


ensembl_gene_id: Amir_0349
symbol: Amir_0349
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ade:Adeh_4135 ABC sugar transporter, inner membrane subunit.


ensembl_gene_id: Amir_0350
symbol: Amir_0350
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: acp:A2cp1_4287 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Amir_0351
symbol: Amir_0351
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rlt:Rleg2_5484 ABC transporter related; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Amir_0355
symbol: Amir_0355
gene_biotype: protein_coding
description:
  Diguanylate cyclase; KEGG: cvi:CV_3252 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein.


ensembl_gene_id: Amir_0358
symbol: Amir_0358
gene_biotype: protein_coding
description:
  PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: ppw:PputW619_0881 membrane bound O-acyl transferase MBOAT family protein; Belongs to the membrane-bound acyltransferase family.


ensembl_gene_id: Amir_0359
symbol: Amir_0359
gene_biotype: protein_coding
description:
  TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: afw:Anae109_2230 RNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: Amir_0360
symbol: cysS
gene_biotype: protein_coding
description:
  KEGG: aeh:Mlg_1810 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia; Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M); Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: Amir_0361
symbol: Amir_0361
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: haloacid dehalogenase-like hydrolase family protein.


ensembl_gene_id: Amir_0362
symbol: ispF
gene_biotype: protein_coding
description:
  2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).


ensembl_gene_id: Amir_0363
symbol: ispD
gene_biotype: protein_coding
description:
  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).


ensembl_gene_id: Amir_0366
symbol: radA
gene_biotype: protein_coding
description:
  DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.


ensembl_gene_id: Amir_0367
symbol: Amir_0367
gene_biotype: protein_coding
description:
  SMART: helix-turn-helix domain protein; KEGG: bur:Bcep18194_B2467 XRE family transcriptional regulator.


ensembl_gene_id: Amir_0368
symbol: Amir_0368
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: reh:H16_B1910 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Amir_0370
symbol: Amir_0370
gene_biotype: protein_coding
description:
  TIGRFAM: trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: glycoside hydrolase 15-related; trehalose- phosphatase; KEGG: nmu:Nmul_A2309 glycoside hydrolase 15-like protein.


ensembl_gene_id: Amir_0371
symbol: Amir_0371
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 20; KEGG: scl:sce0488 Alpha,alpha-trehalose-phosphate synthase (UDP-forming).


ensembl_gene_id: Amir_0376
symbol: Amir_0376
gene_biotype: protein_coding
description:
  PFAM: chemotaxis sensory transducer; GAF domain protein; SMART: chemotaxis sensory transducer; GAF domain protein; KEGG: aba:Acid345_1672 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: Amir_0377
symbol: Amir_0377
gene_biotype: protein_coding
description:
  PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: mxa:MXAN_6334 hypothetical protein.


ensembl_gene_id: Amir_0378
symbol: Amir_0378
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_2673 heavy metal sensor signal transduction histidine kinase.


ensembl_gene_id: Amir_0379
symbol: Amir_0379
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bat:BAS2056 DNA-binding response regulator.


ensembl_gene_id: Amir_0380
symbol: Amir_0380
gene_biotype: protein_coding
description:
  PFAM: Ferric reductase domain protein transmembrane component domain; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 8 domain protein; KEGG: ank:AnaeK_0310 oxidoreductase FAD/NAD(P)- binding domain protein.


ensembl_gene_id: Amir_0382
symbol: Amir_0382
gene_biotype: protein_coding
description:
  ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.


ensembl_gene_id: Amir_0385
symbol: Amir_0385
gene_biotype: protein_coding
description:
  Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; NB-ARC domain protein; transcriptional regulator domain protein; KEGG: scl:sce8759 hypothetical protein.


ensembl_gene_id: Amir_0390
symbol: Amir_0390
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: acr:Acry_2830 LysR family transcriptional regulator.


ensembl_gene_id: Amir_0392
symbol: Amir_0392
gene_biotype: protein_coding
description:
  PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: glo:Glov_1721 peptidase S8 and S53 subtilisin kexin sedolisin; Belongs to the peptidase S8 family.


ensembl_gene_id: Amir_0394
symbol: Amir_0394
gene_biotype: protein_coding
description:
  PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: xca:xccb100_4271 phosphopyruvate hydratase.


ensembl_gene_id: Amir_0395
symbol: Amir_0395
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: bpe:BP1923 short chain dehydrogenase.


ensembl_gene_id: Amir_0398
symbol: Amir_0398
gene_biotype: protein_coding
description:
  Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: beta-lactamase; KEGG: bcz:pE33L466_0099 D-stereospecific peptide hydrolase.


ensembl_gene_id: Amir_0399
symbol: Amir_0399
gene_biotype: protein_coding
description:
  PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: csa:Csal_0365 transcriptional regulator, GntR family.


ensembl_gene_id: Amir_0400
symbol: Amir_0400
gene_biotype: protein_coding
description:
  PFAM: sugar isomerase (SIS); KEGG: sus:Acid_1598 glutamine--fructose-6-phosphate transaminase (isomerizing).


ensembl_gene_id: Amir_0401
symbol: Amir_0401
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: jan:Jann_3555 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Amir_0402
symbol: Amir_0402
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_B0419 ABC sugar transporter, inner membrane subunit.


ensembl_gene_id: Amir_0403
symbol: Amir_0403
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: mlo:mll4149 sugar ABC transporter, (sugar- binding protein).


ensembl_gene_id: Amir_0404
symbol: Amir_0404
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bcy:Bcer98_2752 GntR family transcriptional regulator.


ensembl_gene_id: Amir_0405
symbol: Amir_0405
gene_biotype: protein_coding
description:
  PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: aba:Acid345_2084 pyridoxal-5'-phosphate- dependent enzyme, beta subunit.


ensembl_gene_id: Amir_0406
symbol: Amir_0406
gene_biotype: protein_coding
description:
  PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: scl:sce0163 hypothetical protein.


ensembl_gene_id: Amir_0407
symbol: thiE
gene_biotype: protein_coding
description:
  Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.


ensembl_gene_id: Amir_0408
symbol: Amir_0408
gene_biotype: protein_coding
description:
  TIGRFAM: glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase; KEGG: azc:AZC_3554 putative glycine oxidase precursor.


ensembl_gene_id: Amir_0409
symbol: Amir_0409
gene_biotype: protein_coding
description:
  TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: mms:mma_0316 thiamine biosynthesis protein ThiS.


ensembl_gene_id: Amir_0410
symbol: thiG
gene_biotype: protein_coding
description:
  Thiazole biosynthesis family protein; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.


ensembl_gene_id: Amir_0411
symbol: Amir_0411
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bcm:Bcenmc03_5734 MarR family transcriptional regulator.


ensembl_gene_id: Amir_0418
symbol: Amir_0418
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: bph:Bphy_4607 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Amir_0422
symbol: Amir_0422
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: cak:Caul_0434 alcohol dehydrogenase.


ensembl_gene_id: Amir_0424
symbol: Amir_0424
gene_biotype: protein_coding
description:
  TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: sfu:Sfum_1692 phosphomethylpyrimidine kinase.


ensembl_gene_id: Amir_0425
symbol: thiC
gene_biotype: protein_coding
description:
  Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family.


ensembl_gene_id: Amir_0427
symbol: def
gene_biotype: protein_coding
description:
  Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.


ensembl_gene_id: Amir_0430
symbol: Amir_0430
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: mes:Meso_0568 transcriptional regulator, GntR family.


ensembl_gene_id: Amir_0431
symbol: Amir_0431
gene_biotype: protein_coding
description:
  PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: gme:Gmet_2577 NADH:flavin oxidoreductase/NADH oxidase.


ensembl_gene_id: Amir_0432
symbol: Amir_0432
gene_biotype: protein_coding
description:
  KEGG: mrd:Mrad2831_5798 AAA family ATPase, CDC48 subfamily protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; Belongs to the AAA ATPase family.


ensembl_gene_id: Amir_0433
symbol: Amir_0433
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: scl:sce7901 ECF family RNA polymerase sigma factor.


ensembl_gene_id: Amir_0435
symbol: Amir_0435
gene_biotype: protein_coding
description:
  KEGG: mag:amb0603 phosphatidylserine synthase; TIGRFAM: CDP-diacylglycerol/serine O- phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: Amir_0436
symbol: psd
gene_biotype: protein_coding
description:
  Phosphatidylserine decarboxylase related protein; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).


ensembl_gene_id: Amir_0438
symbol: Amir_0438
gene_biotype: protein_coding
description:
  Molybdenum cofactor synthesis domain protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.


ensembl_gene_id: Amir_0440
symbol: Amir_0440
gene_biotype: protein_coding
description:
  PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: ank:AnaeK_2630 cold-shock DNA-binding domain protein.


ensembl_gene_id: Amir_0441
symbol: Amir_0441
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; protein of unknown function RIO1; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: ade:Adeh_1074 serine/threonine protein kinase.


ensembl_gene_id: Amir_0442
symbol: groL
gene_biotype: protein_coding
description:
  Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.


ensembl_gene_id: Amir_0444
symbol: Amir_0444
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: sus:Acid_3132 ECF subfamily RNA polymerase sigma-24 factor.


ensembl_gene_id: Amir_0446
symbol: Amir_0446
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: rle:pRL100263 putative substrate-binding component of ABC transporter.


ensembl_gene_id: Amir_0447
symbol: Amir_0447
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mxa:MXAN_7294 putative sugar ABC transporter, permease protein.


ensembl_gene_id: Amir_0448
symbol: Amir_0448
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rlt:Rleg2_3667 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Amir_0449
symbol: Amir_0449
gene_biotype: protein_coding
description:
  Beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; KEGG: nar:Saro_2417 beta-N-acetylhexosaminidase.


ensembl_gene_id: Amir_0450
symbol: Amir_0450
gene_biotype: protein_coding
description:
  Phage shock protein C, PspC; PFAM: PspC domain protein; KEGG: cbc:CbuK_0644 stress-responsive transcriptional regulator.


ensembl_gene_id: Amir_0452
symbol: menC
gene_biotype: protein_coding
description:
  Mandelate racemase/muconate lactonizing protein; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).


ensembl_gene_id: Amir_0453
symbol: Amir_0453
gene_biotype: protein_coding
description:
  PFAM: type III restriction protein res subunit; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: SSL2; DNA helicase; K10843 DNA excision repair protein ERCC-3.


ensembl_gene_id: Amir_0457
symbol: Amir_0457
gene_biotype: protein_coding
description:
  ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components; KEGG: twin-arginine translocation pathway signal; K02051 sulfonate/nitrate/taurine transport system substrate-binding protein.


ensembl_gene_id: Amir_0458
symbol: Amir_0458
gene_biotype: protein_coding
description:
  Putative sensor with HAMP domain; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; Nitrate and nitrite sensing domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: mag:amb3383 methyl-accepting chemotaxis protein.


ensembl_gene_id: Amir_0465
symbol: Amir_0465
gene_biotype: protein_coding
description:
  Malate dehydrogenase (oxaloacetate- decarboxylating); PFAM: malic protein NAD-binding; malic protein domain protein; KEGG: sat:SYN_00517 NAD-dependent malic enzyme.


ensembl_gene_id: Amir_0466
symbol: moaC
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein C; Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC family.


ensembl_gene_id: Amir_0467
symbol: Amir_0467
gene_biotype: protein_coding
description:
  TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: sfu:Sfum_0070 molybdenum cofactor synthesis domain.


ensembl_gene_id: Amir_0468
symbol: Amir_0468
gene_biotype: protein_coding
description:
  PFAM: molybdopterin biosynthesis MoaE protein; KEGG: scl:sce2941 molybdopterin-converting factor chain 2.


ensembl_gene_id: Amir_0469
symbol: Amir_0469
gene_biotype: protein_coding
description:
  PFAM: Transglycosylase domain protein; SMART: Peptidoglycan-binding LysM; KEGG: vei:Veis_4083 peptidoglycan-binding LysM.


ensembl_gene_id: Amir_0470
symbol: Amir_0470
gene_biotype: protein_coding
description:
  PFAM: thiamineS protein; KEGG: ade:Adeh_1120 molybdopterin synthase subunit MoaE / molybdopterin synthase subunit MoaD.


ensembl_gene_id: Amir_0471
symbol: moaA
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.


ensembl_gene_id: Amir_0472
symbol: Amir_0472
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bja:bll4976 transcriptional regulatory protein.


ensembl_gene_id: Amir_0473
symbol: Amir_0473
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: csa:Csal_0794 HAD-superfamily hydrolase, subfamily IIA; Belongs to the HAD-like hydrolase superfamily.


ensembl_gene_id: Amir_0477
symbol: Amir_0477
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; Oxidoreductase domain; KEGG: similar to dimeric dihydrodiol dehydrogenase.


ensembl_gene_id: Amir_0481
symbol: Amir_0481
gene_biotype: protein_coding
description:
  PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: bcy:Bcer98_3497 cold-shock DNA-binding domain- containing protein.


ensembl_gene_id: Amir_0488
symbol: Amir_0488
gene_biotype: protein_coding
description:
  PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: acp:A2cp1_3490 xanthine/uracil/vitamin C permease.


ensembl_gene_id: Amir_0489
symbol: Amir_0489
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bvi:Bcep1808_5100 MarR family transcriptional regulator.


ensembl_gene_id: Amir_0490
symbol: Amir_0490
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; KEGG: bpy:Bphyt_5813 major facilitator superfamily MFS_1.


ensembl_gene_id: Amir_0491
symbol: Amir_0491
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; KEGG: gdi:GDI0684 major facilitator transporter.


ensembl_gene_id: Amir_0492
symbol: Amir_0492
gene_biotype: protein_coding
description:
  Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.


ensembl_gene_id: Amir_0493
symbol: Amir_0493
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: scl:sce6528 ABC transporter, ATP-binding protein.


ensembl_gene_id: Amir_0498
symbol: Amir_0498
gene_biotype: protein_coding
description:
  PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; dienelactone hydrolase; phospholipase/Carboxylesterase; KEGG: hypothetical protein.


ensembl_gene_id: Amir_0499
symbol: Amir_0499
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; KEGG: lpp:lpp1608 hypothetical protein.


ensembl_gene_id: Amir_0500
symbol: Amir_0500
gene_biotype: protein_coding
description:
  PFAM: polysaccharide lyase family 8; polysaccharide lyase 8 alpha-helical; KEGG: vvy:VVA1636 hypothetical protein.


ensembl_gene_id: Amir_0501
symbol: pdxH
gene_biotype: protein_coding
description:
  Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).


ensembl_gene_id: Amir_0502
symbol: ureD
gene_biotype: protein_coding
description:
  Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.


ensembl_gene_id: Amir_0504
symbol: ureG
gene_biotype: protein_coding
description:
  Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.


ensembl_gene_id: Amir_0506
symbol: ureC
gene_biotype: protein_coding
description:
  TIGRFAM: urease, alpha subunit; PFAM: amidohydrolase; Urease alpha-subunit domain protein; KEGG: ank:AnaeK_0975 urease, alpha subunit.


ensembl_gene_id: Amir_0507
symbol: ureB
gene_biotype: protein_coding
description:
  KEGG: atu:Atu2405 urease subunit beta; TIGRFAM: urease, beta subunit; PFAM: Urease beta subunit; Belongs to the urease beta subunit family.


ensembl_gene_id: Amir_0508
symbol: ureA
gene_biotype: protein_coding
description:
  KEGG: oan:Oant_0332 urease, gamma subunit; TIGRFAM: urease, gamma subunit; PFAM: Urease gamma subunit region; Belongs to the urease gamma subunit family.


ensembl_gene_id: Amir_0509
symbol: Amir_0509
gene_biotype: protein_coding
description:
  PFAM: Citrate synthase; KEGG: pzu:PHZ_c0162 citrate synthase GltA; Belongs to the citrate synthase family.


ensembl_gene_id: Amir_0512
symbol: Amir_0512
gene_biotype: protein_coding
description:
  PFAM: histidine kinase dimerization and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: sus:Acid_1273 integral membrane sensor signal transduction histidine kinase.


ensembl_gene_id: Amir_0513
symbol: Amir_0513
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sus:Acid_2683 two component LuxR family transcriptional regulator.


ensembl_gene_id: Amir_0514
symbol: serC
gene_biotype: protein_coding
description:
  Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.


ensembl_gene_id: Amir_0519
symbol: Amir_0519
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: rce:RC1_1837 ABC transporter, ATP-binding.


ensembl_gene_id: Amir_0520
symbol: Amir_0520
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: bha:BH1126 ABC transporter ATP-binding protein.


ensembl_gene_id: Amir_0525
symbol: Amir_0525
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: bat:BAS5190 acyl-CoA dehydrogenase.


ensembl_gene_id: Amir_0528
symbol: Amir_0528
gene_biotype: protein_coding
description:
  Citrate synthase I; KEGG: scl:sce8281 hypothetical protein; TIGRFAM: citrate synthase I; PFAM: Citrate synthase.


ensembl_gene_id: Amir_0529
symbol: Amir_0529
gene_biotype: protein_coding
description:
  Deoxyribodipyrimidine photo-lyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: cvi:CV_3481 deoxyribodipyrimidine photo-lyase.


ensembl_gene_id: Amir_0530
symbol: Amir_0530
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver; KEGG: tgr:Tgr7_2171 two component transcriptional regulator, LuxR family.


ensembl_gene_id: Amir_0531
symbol: Amir_0531
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerization and phosphoacceptor region; SMART: ATP-binding region ATPase domain protein; KEGG: mmr:Mmar10_2544 putative signal transduction histidine kinase.


ensembl_gene_id: Amir_0533
symbol: Amir_0533
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH1166 ABC transporter ATP-binding protein.


ensembl_gene_id: Amir_0534
symbol: Amir_0534
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: gdi:GDI1973 putative HTH-type transcriptional regulator.


ensembl_gene_id: Amir_0535
symbol: Amir_0535
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.


ensembl_gene_id: Amir_0539
symbol: Amir_0539
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: pzu:PHZ_c1983 alcohol dehydrogenase, zinc- containing.


ensembl_gene_id: Amir_0540
symbol: Amir_0540
gene_biotype: protein_coding
description:
  PFAM: GCN5-related N-acetyltransferase; KEGG: bur:Bcep18194_A4874 GCN5-related N- acetyltransferase.


ensembl_gene_id: Amir_0548
symbol: Amir_0548
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dvm:DvMF_0511 transcriptional regulator, LysR family.


ensembl_gene_id: Amir_0549
symbol: Amir_0549
gene_biotype: protein_coding
description:
  TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: aha:AHA_2368 putative phenazine biosynthesis protein PhzF.


ensembl_gene_id: Amir_0550
symbol: Amir_0550
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bcm:Bcenmc03_5299 LysR family transcriptional regulator.


ensembl_gene_id: Amir_0551
symbol: Amir_0551
gene_biotype: protein_coding
description:
  PFAM: NmrA family protein; short-chain dehydrogenase/reductase SDR; KEGG: mxa:MXAN_5100 NmrA family protein.


ensembl_gene_id: Amir_0552
symbol: Amir_0552
gene_biotype: protein_coding
description:
  Transcriptional regulator, HxlR family; PFAM: helix-turn-helix HxlR type; KEGG: mxa:MXAN_5099 putative transcriptional regulator.


ensembl_gene_id: Amir_0559
symbol: Amir_0559
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; KEGG: ank:AnaeK_3854 tetratricopeptide TPR_2 repeat protein.


ensembl_gene_id: Amir_0563
symbol: Amir_0563
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: AlkA domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: scl:sce6205 putative regulatory protein Ada.


ensembl_gene_id: Amir_0570
symbol: Amir_0570
gene_biotype: protein_coding
description:
  TIGRFAM: conserved repeat domain protein; LPXTG- motif cell wall anchor domain protein; PFAM: Cna B domain protein; Pericardin like; KEGG: gme:Gmet_2043 hypothetical protein.


ensembl_gene_id: Amir_0576
symbol: Amir_0576
gene_biotype: protein_coding
description:
  Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; Tetratricopeptide TPR_4; TPR repeat-containing protein; NB- ARC domain protein; transcriptional regulator domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: scl:sce5225 protein kinase.


ensembl_gene_id: Amir_0590
symbol: Amir_0590
gene_biotype: protein_coding
description:
  PFAM: phosphoadenosine phosphosulfate reductase; KEGG: swi:Swit_5329 phosphoadenosine phosphosulfate reductase.


ensembl_gene_id: Amir_0593
symbol: Amir_0593
gene_biotype: protein_coding
description:
  PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: afw:Anae109_1098 aminotransferase class V.


ensembl_gene_id: Amir_0594
symbol: Amir_0594
gene_biotype: protein_coding
description:
  PFAM: type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: nha:Nham_3708 helicase-like.


ensembl_gene_id: Amir_0600
symbol: Amir_0600
gene_biotype: protein_coding
description:
  PFAM: peptidase S45 penicillin amidase; KEGG: abc:ACICU_01963 protein related to penicillin acylase.


ensembl_gene_id: Amir_0601
symbol: Amir_0601
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; SMART: response regulator receiver; regulatory protein LuxR; KEGG: scl:sce5431 two-component system response regulator.


ensembl_gene_id: Amir_0602
symbol: Amir_0602
gene_biotype: protein_coding
description:
  KEGG: mgm:Mmc1_3430 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein.


ensembl_gene_id: Amir_0603
symbol: Amir_0603
gene_biotype: protein_coding
description:
  TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; KEGG: ajs:Ajs_3177 cob(II)yrinic acid a,c-diamide reductase.


ensembl_gene_id: Amir_0604
symbol: rpsR
gene_biotype: protein_coding
description:
  Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.


ensembl_gene_id: Amir_0605
symbol: rpsN
gene_biotype: protein_coding
description:
  Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.


ensembl_gene_id: Amir_0606
symbol: rpmG
gene_biotype: protein_coding
description:
  TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: bpe:BP2050 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.


ensembl_gene_id: Amir_0607
symbol: rpmB
gene_biotype: protein_coding
description:
  TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: tcx:Tcr_1918 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.


ensembl_gene_id: Amir_0608
symbol: Amir_0608
gene_biotype: protein_coding
description:
  PFAM: Phosphoglycerate mutase; KEGG: phosphoglycerate/bisphosphoglycerate mutase family protein; Belongs to the phosphoglycerate mutase family.


ensembl_gene_id: Amir_0610
symbol: Amir_0610
gene_biotype: protein_coding
description:
  PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: scl:sce7905 hypothetical protein.


ensembl_gene_id: Amir_0612
symbol: Amir_0612
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sfu:Sfum_2007 two component transcriptional regulator, winged helix family.


ensembl_gene_id: Amir_0613
symbol: Amir_0613
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: sfu:Sfum_2006 integral membrane sensor signal transduction histidine kinase.


ensembl_gene_id: Amir_0614
symbol: Amir_0614
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mmw:Mmwyl1_2010 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Amir_0615
symbol: Amir_0615
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120384 putative permease component of ABC transporter.


ensembl_gene_id: Amir_0617
symbol: Amir_0617
gene_biotype: protein_coding
description:
  Beta-galactosidase; PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein; KEGG: bha:BH3701 beta-galactosidase.


ensembl_gene_id: Amir_0618
symbol: Amir_0618
gene_biotype: protein_coding
description:
  Transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; KEGG: glpRb; glycerol-3-phosphate transcriptional regulator protein.


ensembl_gene_id: Amir_0619
symbol: Amir_0619
gene_biotype: protein_coding
description:
  KEGG: nmu:Nmul_A1939 galactose-1-phosphate uridylyltransferase; TIGRFAM: galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein.


ensembl_gene_id: Amir_0620
symbol: Amir_0620
gene_biotype: protein_coding
description:
  PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein; KEGG: gox:GOX0798 serine protease.


ensembl_gene_id: Amir_0624
symbol: mscL
gene_biotype: protein_coding
description:
  Large conductance mechanosensitive channel protein; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.


ensembl_gene_id: Amir_0627
symbol: Amir_0627
gene_biotype: protein_coding
description:
  TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: ade:Adeh_1046 5-formyltetrahydrofolate cyclo- ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.


ensembl_gene_id: Amir_0632
symbol: Amir_0632
gene_biotype: protein_coding
description:
  Putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: nwi:Nwi_3032 Crp family transcriptional regulator.


ensembl_gene_id: Amir_0635
symbol: Amir_0635
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; aminoglycoside phosphotransferase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: mxa:MXAN_4017 serine/threonine protein kinase.


ensembl_gene_id: Amir_0637
symbol: rsmI
gene_biotype: protein_coding
description:
  Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.


ensembl_gene_id: Amir_0642
symbol: metG
gene_biotype: protein_coding
description:
  methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.


ensembl_gene_id: Amir_0643
symbol: Amir_0643
gene_biotype: protein_coding
description:
  TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: bcz:BCZK0035 TatD related DNase.


ensembl_gene_id: Amir_0644
symbol: Amir_0644
gene_biotype: protein_coding
description:
  PFAM: Transglycosylase domain protein; protein of unknown function DUF348; G5 domain protein; KEGG: bsu:BSU00400 hypothetical protein.


ensembl_gene_id: Amir_0645
symbol: rsmA
gene_biotype: protein_coding
description:
  Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.


ensembl_gene_id: Amir_0646
symbol: metN
gene_biotype: protein_coding
description:
  ABC transporter related; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.


ensembl_gene_id: Amir_0647
symbol: Amir_0647
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vsp:VS_2383 probable D-methionine transport system permease protein MetI.


ensembl_gene_id: Amir_0649
symbol: ispE
gene_biotype: protein_coding
description:
  4-diphosphocytidyl-2C-methyl-D-erythritolkinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.


ensembl_gene_id: Amir_0650
symbol: Amir_0650
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcb:BCB4264_A2173 ABC transporter, ATP- binding protein.


ensembl_gene_id: Amir_0653
symbol: pth
gene_biotype: protein_coding
description:
  peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.


ensembl_gene_id: Amir_0655
symbol: rplY
gene_biotype: protein_coding
description:
  Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.


ensembl_gene_id: Amir_0656
symbol: prs
gene_biotype: protein_coding
description:
  Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.


ensembl_gene_id: Amir_0657
symbol: glmU
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine pyrophosphorylase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain.


ensembl_gene_id: Amir_0658
symbol: Amir_0658
gene_biotype: protein_coding
description:
  KEGG: hha:Hhal_1304 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein.


ensembl_gene_id: Amir_0659
symbol: Amir_0659
gene_biotype: protein_coding
description:
  Dipeptidylaminopeptidase/acylaminoacyl- peptidase-like protein; KEGG: hne:HNE_1191 hypothetical protein.


ensembl_gene_id: Amir_0660
symbol: Amir_0660
gene_biotype: protein_coding
description:
  Stearoyl-CoA 9-desaturase; PFAM: fatty acid desaturase; KEGG: pfl:PFL_0262 fatty acid desaturase family proteiin.


ensembl_gene_id: Amir_0665
symbol: mfd
gene_biotype: protein_coding
description:
  Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.


ensembl_gene_id: Amir_0667
symbol: Amir_0667
gene_biotype: protein_coding
description:
  TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: rce:RC1_0140 MazG family protein.


ensembl_gene_id: Amir_0669
symbol: Amir_0669
gene_biotype: protein_coding
description:
  Membrane-bound lytic murein transglycosylase B-like protein; KEGG: scl:sce1066 hypothetical protein.


ensembl_gene_id: Amir_0670
symbol: Amir_0670
gene_biotype: protein_coding
description:
  PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: azc:AZC_2926 TPR repeat-containing protein.


ensembl_gene_id: Amir_0671
symbol: eno
gene_biotype: protein_coding
description:
  Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.


ensembl_gene_id: Amir_0674
symbol: Amir_0674
gene_biotype: protein_coding
description:
  Membrane-bound lytic murein transglycosylase B-like protein; KEGG: GI22470 gene product from transcript GI22470- RA.


ensembl_gene_id: Amir_0676
symbol: Amir_0676
gene_biotype: protein_coding
description:
  4-phytase; PFAM: extracellular solute-binding protein family 5; KEGG: bsu:BSU11430 oligopeptide ABC transporter (binding protein).


ensembl_gene_id: Amir_0677
symbol: Amir_0677
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_1184 dipeptide ABC transporter, permease protein.


ensembl_gene_id: Amir_0678
symbol: Amir_0678
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bpt:Bpet2850 ABC transporter inner membrane protein.


ensembl_gene_id: Amir_0679
symbol: Amir_0679
gene_biotype: protein_coding
description:
  KEGG: mrd:Mrad2831_4369 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Amir_0680
symbol: Amir_0680
gene_biotype: protein_coding
description:
  Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: bbt:BBta_6951 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Amir_0681
symbol: Amir_0681
gene_biotype: protein_coding
description:
  PFAM: peptidase S10 serine carboxypeptidase; KEGG: gur:Gura_2114 peptidase S10, serine carboxypeptidase.


ensembl_gene_id: Amir_0682
symbol: Amir_0682
gene_biotype: protein_coding
description:
  PFAM: Uracil-DNA glycosylase superfamily; KEGG: ank:AnaeK_3689 uracil-DNA glycosylase superfamily protein.


ensembl_gene_id: Amir_0685
symbol: Amir_0685
gene_biotype: protein_coding
description:
  PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: sml:Smlt4485 putative ATPase.


ensembl_gene_id: Amir_0688
symbol: Amir_0688
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: rsh:Rsph17029_3442 cyclic nucleotide- regulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Amir_0699
symbol: Amir_0699
gene_biotype: protein_coding
description:
  acetyl-CoA acetyltransferase; KEGG: aba:Acid345_2470 3-ketoacyl-CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Amir_0700
symbol: Amir_0700
gene_biotype: protein_coding
description:
  Cystathionine beta-synthase; KEGG: afw:Anae109_3846 pyridoxal-5'-phosphate- dependent protein beta subunit; TIGRFAM: cystathionine beta-synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; CBS domain containing protein; SMART: CBS domain containing protein.


ensembl_gene_id: Amir_0702
symbol: Amir_0702
gene_biotype: protein_coding
description:
  Cystathionine gamma-synthase; PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: afw:Anae109_3845 cystathionine gamma-lyase.


ensembl_gene_id: Amir_0705
symbol: Amir_0705
gene_biotype: protein_coding
description:
  KEGG: bcy:Bcer98_0228 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Amir_0706
symbol: Amir_0706
gene_biotype: protein_coding
description:
  PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: ppg:PputGB1_0412 AsnC family transcriptional regulator.


ensembl_gene_id: Amir_0707
symbol: greA
gene_biotype: protein_coding
description:
  Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.


ensembl_gene_id: Amir_0709
symbol: mca
gene_biotype: protein_coding
description:
  Mycothiol conjugate amidase Mca; A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl-inositol) S- conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics; Belongs to the MshB deacetylase family. Mca subfamily.


ensembl_gene_id: Amir_0713
symbol: Amir_0713
gene_biotype: protein_coding
description:
  TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: afw:Anae109_1200 hemolysin III family channel protein.


ensembl_gene_id: Amir_0714
symbol: Amir_0714
gene_biotype: protein_coding
description:
  Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.


ensembl_gene_id: Amir_0717
symbol: Amir_0717
gene_biotype: protein_coding
description:
  PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: dal:Dalk_3397 PhoH family protein.


ensembl_gene_id: Amir_0718
symbol: Amir_0718
gene_biotype: protein_coding
description:
  IMP dehydrogenase family protein; KEGG: afw:Anae109_3133 inositol-5-monophosphate dehydrogenase; TIGRFAM: IMP dehydrogenase family protein; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein; SMART: CBS domain containing protein.


ensembl_gene_id: Amir_0719
symbol: lig
gene_biotype: protein_coding
description:
  DNA ligase I, ATP-dependent Dnl1; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.


ensembl_gene_id: Amir_0720
symbol: fumC
gene_biotype: protein_coding
description:
  Fumarate lyase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.


ensembl_gene_id: Amir_0721
symbol: Amir_0721
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bha:BH3408 thioredoxin reductase.


ensembl_gene_id: Amir_0723
symbol: Amir_0723
gene_biotype: protein_coding
description:
  PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: peptidase S1 and S6 chymotrypsin/Hap; KEGG: hypothetical protein.


ensembl_gene_id: Amir_0724
symbol: Amir_0724
gene_biotype: protein_coding
description:
  TIGRFAM: fructose-1,6-bisphosphatase, class II; PFAM: GlpX family protein; KEGG: dvm:DvMF_0188 fructose-1,6-bisphosphatase, class II.


ensembl_gene_id: Amir_0725
symbol: xseB
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.


ensembl_gene_id: Amir_0727
symbol: xseA
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.


ensembl_gene_id: Amir_0729
symbol: ispH
gene_biotype: protein_coding
description:
  Hydroxymethylbutenyl pyrophosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.


ensembl_gene_id: Amir_0732
symbol: sbcD
gene_biotype: protein_coding
description:
  Nuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.


ensembl_gene_id: Amir_0734
symbol: Amir_0734
gene_biotype: protein_coding
description:
  TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding; KEGG: sus:Acid_4002 methylated-DNA--protein- cysteine methyltransferase.


ensembl_gene_id: Amir_0735
symbol: Amir_0735
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; KEGG: scl:sce6205 putative regulatory protein Ada; PFAM: AlkA domain protein; Ada metal-binding domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type.


ensembl_gene_id: Amir_0736
symbol: ychF
gene_biotype: protein_coding
description:
  GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.


ensembl_gene_id: Amir_0745
symbol: Amir_0745
gene_biotype: protein_coding
description:
  PFAM: transcriptional coactivator/pterin dehydratase; KEGG: mxa:MXAN_6773 putative pterin-4-alpha- carbinolamine dehydratase.


ensembl_gene_id: Amir_0746
symbol: Amir_0746
gene_biotype: protein_coding
description:
  TIGRFAM: ABC transporter, periplasmic binding protein, thiB subfamily; PFAM: extracellular solute-binding protein family 1; KEGG: cvi:CV_3164 thiamin-binding periplasmic protein.


ensembl_gene_id: Amir_0747
symbol: Amir_0747
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_3245 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Amir_0748
symbol: Amir_0748
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bra:BRADO7092 spermidine/putrescine ABC transporter ATP-binding protein.


ensembl_gene_id: Amir_0749
symbol: Amir_0749
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: aeh:Mlg_1077 ABC-type transport system involved in multi-copper enzyme maturation, permease component.


ensembl_gene_id: Amir_0751
symbol: Amir_0751
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH0445 ABC transporter ATP-binding protein.


ensembl_gene_id: Amir_0753
symbol: Amir_0753
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: met:M446_6140 two component transcriptional regulator.


ensembl_gene_id: Amir_0754
symbol: Amir_0754
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gbm:Gbem_2673 heavy metal sensor signal transduction histidine kinase.


ensembl_gene_id: Amir_0756
symbol: Amir_0756
gene_biotype: protein_coding
description:
  KEGG: hsm:HSM_0044 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib.


ensembl_gene_id: Amir_0759
symbol: Amir_0759
gene_biotype: protein_coding
description:
  TIGRFAM: GTP-binding protein TypA; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: aba:Acid345_4404 GTP-binding protein TypA.


ensembl_gene_id: Amir_0760
symbol: Amir_0760
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: mes:Meso_1835 extracellular solute-binding protein, family 5.


ensembl_gene_id: Amir_0762
symbol: Amir_0762
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mes:Meso_1834 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Amir_0763
symbol: Amir_0763
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mes:Meso_1833 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Amir_0764
symbol: Amir_0764
gene_biotype: protein_coding
description:
  Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: bcs:BCAN_B1102 oligopeptide/dipeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Amir_0765
symbol: Amir_0765
gene_biotype: protein_coding
description:
  Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: bra:BRADO1097 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Amir_0766
symbol: mshB
gene_biotype: protein_coding
description:
  1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-gluc opyranosidedeacetylase; Catalyzes the deacetylation of 1D-myo-inositol 2-acetamido-2- deoxy-alpha-D-glucopyranoside (GlcNAc-Ins) in the mycothiol biosynthesis pathway.


ensembl_gene_id: Amir_0770
symbol: Amir_0770
gene_biotype: protein_coding
description:
  4Fe-4S ferredoxin iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.


ensembl_gene_id: Amir_0772
symbol: dapD
gene_biotype: protein_coding
description:
  2,3,4,5-tetrahydropyridine-2-carboxylateN-succin yltransferase; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA.


ensembl_gene_id: Amir_0773
symbol: Amir_0773
gene_biotype: protein_coding
description:
  TIGRFAM: succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerization domain protein; KEGG: ank:AnaeK_3891 peptidase M20.


ensembl_gene_id: Amir_0775
symbol: Amir_0775
gene_biotype: protein_coding
description:
  PFAM: conserved hypothetical protein; KEGG: mpt:Mpe_A2111 hypothetical protein; Belongs to the LOG family.


ensembl_gene_id: Amir_0776
symbol: Amir_0776
gene_biotype: protein_coding
description:
  PFAM: peptidase S15; X-Pro dipeptidyl-peptidase domain protein; Acetyl xylan esterase; KEGG: sml:Smlt2609 putative X-Pro dipeptidyl- peptidase protein.


ensembl_gene_id: Amir_0777
symbol: Amir_0777
gene_biotype: protein_coding
description:
  Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.


ensembl_gene_id: Amir_0778
symbol: Amir_0778
gene_biotype: protein_coding
description:
  PFAM: transcriptional regulator PadR family protein; KEGG: aba:Acid345_4626 transcriptional regulator, PadR family.


ensembl_gene_id: Amir_0781
symbol: Amir_0781
gene_biotype: protein_coding
description:
  KEGG: tmz:Tmz1t_2227 DNA-3-methyladenine glycosylase I; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase.


ensembl_gene_id: Amir_0783
symbol: Amir_0783
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bph:Bphy_2359 alcohol dehydrogenase.


ensembl_gene_id: Amir_0787
symbol: Amir_0787
gene_biotype: protein_coding
description:
  Transcriptional regulator, PaaX family; PFAM: PaaX domain protein domain; PaaX domain protein; KEGG: bha:BH0194 repressor in the phenylacetic acid catabolic pathway.


ensembl_gene_id: Amir_0789
symbol: Amir_0789
gene_biotype: protein_coding
description:
  PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: rce:RC1_1566 leucyl aminopeptidase PepA, putative; Belongs to the peptidase M17 family.


ensembl_gene_id: Amir_0790
symbol: Amir_0790
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bsu:BSU40670 hypothetical protein.


ensembl_gene_id: Amir_0793
symbol: Amir_0793
gene_biotype: protein_coding
description:
  TIGRFAM: glycogen synthase; PFAM: glycosyl transferase group 1; KEGG: bmj:BMULJ_06045 putative glycosyltransferase.


ensembl_gene_id: Amir_0794
symbol: glgC
gene_biotype: protein_coding
description:
  Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.


ensembl_gene_id: Amir_0795
symbol: Amir_0795
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: sus:Acid_0793 ECF subfamily RNA polymerase sigma-24 factor.


ensembl_gene_id: Amir_0797
symbol: Amir_0797
gene_biotype: protein_coding
description:
  PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: rfr:Rfer_2959 peptidase S1 and S6, chymotrypsin/Hap.


ensembl_gene_id: Amir_0798
symbol: tatB
gene_biotype: protein_coding
description:
  Twin-arginine translocation protein, TatB subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.


ensembl_gene_id: Amir_0799
symbol: Amir_0799
gene_biotype: protein_coding
description:
  Protein of unknown function DUF59; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.


ensembl_gene_id: Amir_0800
symbol: Amir_0800
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: pst:PSPTO_3861 MarR family transcriptional regulator.


ensembl_gene_id: Amir_0802
symbol: Amir_0802
gene_biotype: protein_coding
description:
  PFAM: MgtE intracellular region; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: gur:Gura_2041 MgtE intracellular region.


ensembl_gene_id: Amir_0803
symbol: Amir_0803
gene_biotype: protein_coding
description:
  PFAM: aminoglycoside/hydroxyurea antibiotic resistance kinase; KEGG: pap:PSPA7_3432 streptomycin 3''-kinase (streptomycin 3''-phosphotransferase) (SPH).


ensembl_gene_id: Amir_0805
symbol: Amir_0805
gene_biotype: protein_coding
description:
  Citrate (pro-3S)-lyase; PFAM: HpcH/HpaI aldolase; KEGG: sil:SPO1565 citrate lyase, putative; Belongs to the HpcH/HpaI aldolase family.


ensembl_gene_id: Amir_0807
symbol: Amir_0807
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: noc:Noc_0282 extracellular solute-binding protein.


ensembl_gene_id: Amir_0808
symbol: Amir_0808
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: noc:Noc_0281 ABC transporter, inner membrane subunit.


ensembl_gene_id: Amir_0809
symbol: Amir_0809
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: noc:Noc_0280 ABC transporter, inner membrane subunit.


ensembl_gene_id: Amir_0810
symbol: Amir_0810
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: noc:Noc_0279 ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Amir_0811
symbol: Amir_0811
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpb:RPB_3589 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Amir_0813
symbol: Amir_0813
gene_biotype: protein_coding
description:
  PFAM: transcriptional regulator PadR family protein; KEGG: bmj:BMULJ_03145 PadR-like family transcriptional regulator.


ensembl_gene_id: Amir_0816
symbol: corA
gene_biotype: protein_coding
description:
  Magnesium and cobalt transport protein CorA; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family.


ensembl_gene_id: Amir_0820
symbol: Amir_0820
gene_biotype: protein_coding
description:
  PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: mxa:MXAN_2739 hypothetical protein.


ensembl_gene_id: Amir_0824
symbol: Amir_0824
gene_biotype: protein_coding
description:
  PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: rle:RL3597 putative DEAD box ATP-dependent RNA helicase protein; Belongs to the DEAD box helicase family.


ensembl_gene_id: Amir_0833
symbol: Amir_0833
gene_biotype: protein_coding
description:
  PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: hch:HCH_02851 molybdopterin/thiamine biosynthesis family protein.


ensembl_gene_id: Amir_0835
symbol: Amir_0835
gene_biotype: protein_coding
description:
  PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: msl:Msil_3772 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: Amir_0836
symbol: Amir_0836
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: scl:sce3488 nitrite reductase.


ensembl_gene_id: Amir_0838
symbol: Amir_0838
gene_biotype: protein_coding
description:
  TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; nitrite/sulfite reductase hemoprotein beta- component ferrodoxin domain protein; KEGG: bam:Bamb_3936 nitrite reductase (NAD(P)H), large subunit.


ensembl_gene_id: Amir_0839
symbol: Amir_0839
gene_biotype: protein_coding
description:
  TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: mfa:Mfla_0318 nitrite reductase (NAD(P)H) large subunit, NirD.


ensembl_gene_id: Amir_0840
symbol: Amir_0840
gene_biotype: protein_coding
description:
  PFAM: Uroporphyrinogen III synthase HEM4; transcriptional regulator domain protein; KEGG: scl:sce6449 putative transcriptional regulator.


ensembl_gene_id: Amir_0841
symbol: Amir_0841
gene_biotype: protein_coding
description:
  PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: rso:RS03744 putative transmembrane protein.


ensembl_gene_id: Amir_0844
symbol: Amir_0844
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: pst:PSPTO_1307 DNA-binding heavy metal response regulator.


ensembl_gene_id: Amir_0845
symbol: Amir_0845
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: gsu:GSU0452 sensor histidine kinase.


ensembl_gene_id: Amir_0847
symbol: Amir_0847
gene_biotype: protein_coding
description:
  PFAM: TrkA-N domain protein; Ion transport 2 domain protein; KEGG: bpy:Bphyt_4906 TrkA-N domain protein.


ensembl_gene_id: Amir_0851
symbol: Amir_0851
gene_biotype: protein_coding
description:
  PFAM: UvrD/REP helicase; KEGG: xau:Xaut_0776 UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.


ensembl_gene_id: Amir_0852
symbol: Amir_0852
gene_biotype: protein_coding
description:
  PFAM: UvrD/REP helicase; KEGG: ank:AnaeK_0104 UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.


ensembl_gene_id: Amir_0853
symbol: Amir_0853
gene_biotype: protein_coding
description:
  PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding; KEGG: aci:ACIAD2864 putative methyltransferase.


ensembl_gene_id: Amir_0855
symbol: Amir_0855
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mlo:mll2196 short chain oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Amir_0856
symbol: Amir_0856
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: scl:sce1423 LysR family transcriptional regulator.


ensembl_gene_id: Amir_0857
symbol: Amir_0857
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function zinc metallopeptidase putative; KEGG: atc:AGR_C_3948 conserved hypothetical protein PA4717.


ensembl_gene_id: Amir_0858
symbol: Amir_0858
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function zinc metallopeptidase putative; KEGG: dno:DNO_0928 hypothetical protein.


ensembl_gene_id: Amir_0860
symbol: Amir_0860
gene_biotype: protein_coding
description:
  Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.


ensembl_gene_id: Amir_0863
symbol: Amir_0863
gene_biotype: protein_coding
description:
  PFAM: peptidase M16 domain protein; KEGG: afw:Anae109_0081 peptidase M16 domain- containing protein.


ensembl_gene_id: Amir_0865
symbol: Amir_0865
gene_biotype: protein_coding
description:
  PFAM: NUDIX hydrolase; NADH pyrophosphatase-like; Zinc ribbon NADH pyrophosphatase; KEGG: xcv:XCV0537 NUDIX hydrolase family protein.


ensembl_gene_id: Amir_0872
symbol: cobD
gene_biotype: protein_coding
description:
  Cobalamin biosynthesis protein CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.


ensembl_gene_id: Amir_0874
symbol: Amir_0874
gene_biotype: protein_coding
description:
  PFAM: fructosamine kinase; aminoglycoside phosphotransferase; KEGG: hch:HCH_00321 fructosamine-3-kinase.


ensembl_gene_id: Amir_0875
symbol: Amir_0875
gene_biotype: protein_coding
description:
  PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: rru:Rru_A3646 protein tyrosine phosphatase.


ensembl_gene_id: Amir_0879
symbol: Amir_0879
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF34; KEGG: pca:Pcar_2677 hypothetical protein; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.


ensembl_gene_id: Amir_0882
symbol: Amir_0882
gene_biotype: protein_coding
description:
  PFAM: NADPH-dependent FMN reductase; KEGG: cti:RALTA_A1785 NAD(P)H-dependent FMN reductase, sulfate starvation-induced protein.


ensembl_gene_id: Amir_0892
symbol: Amir_0892
gene_biotype: protein_coding
description:
  TIGRFAM: NADPH-dependent F420 reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; Semialdehyde dehydrogenase NAD - binding; 6- phosphogluconate dehydrogenase NAD-binding; KEGG: oca:OCAR_5001 NADPH-dependent f420 reductase.


ensembl_gene_id: Amir_0894
symbol: Amir_0894
gene_biotype: protein_coding
description:
  KEGG: bte:BTH_II2193 proline iminopeptidase; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; Belongs to the peptidase S33 family.


ensembl_gene_id: Amir_0895
symbol: Amir_0895
gene_biotype: protein_coding
description:
  SMART: LamG domain protein jellyroll fold domain protein; KEGG: GK16139 gene product from transcript GK16139- RA.


ensembl_gene_id: Amir_0904
symbol: panB
gene_biotype: protein_coding
description:
  3-methyl-2-oxobutanoatehydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.


ensembl_gene_id: Amir_0906
symbol: lysS-2
gene_biotype: protein_coding
description:
  KEGG: mgm:Mmc1_1032 lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); protein of unknown function DUF472; protein of unknown function DUF471; protein of unknown function DUF470; nucleic acid binding OB-fold tRNA/helicase-type; Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: Amir_0907
symbol: Amir_0907
gene_biotype: protein_coding
description:
  PFAM: TAP domain protein; alpha/beta hydrolase fold; KEGG: spe:Spro_2416 TAP domain-containing protein.


ensembl_gene_id: Amir_0908
symbol: nadE
gene_biotype: protein_coding
description:
  NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.


ensembl_gene_id: Amir_0909
symbol: Amir_0909
gene_biotype: protein_coding
description:
  PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: sat:SYN_01628 glutamine synthetase.


ensembl_gene_id: Amir_0913
symbol: glnE
gene_biotype: protein_coding
description:
  (Glutamate--ammonia-ligase) adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal tra [...]


ensembl_gene_id: Amir_0917
symbol: Amir_0917
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: yen:YE1303 hypothetical protein.


ensembl_gene_id: Amir_0921
symbol: Amir_0921
gene_biotype: protein_coding
description:
  DNA segregation ATPase FtsK/SpoIIIE-related protein; KEGG: pha:PSHAb0091 cell divisionFtsK/SpoIIIE domain-containing protein.


ensembl_gene_id: Amir_0924
symbol: Amir_0924
gene_biotype: protein_coding
description:
  PFAM: integrase family protein; KEGG: bcb:BCB4264_A2589 DNA integration/recombination/invertion protein; Belongs to the 'phage' integrase family.


ensembl_gene_id: Amir_0925
symbol: Amir_0925
gene_biotype: protein_coding
description:
  TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: gur:Gura_2228 glutamine synthetase, type I.


ensembl_gene_id: Amir_0928
symbol: Amir_0928
gene_biotype: protein_coding
description:
  PFAM: UvrD/REP helicase; HRDC domain protein; SMART: HRDC domain protein; KEGG: bam:Bamb_1322 UvrD/REP helicase.


ensembl_gene_id: Amir_0931
symbol: Amir_0931
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: smt:Smal_2740 ubiquinone biosynthesis O- methyltransferase.


ensembl_gene_id: Amir_0935
symbol: Amir_0935
gene_biotype: protein_coding
description:
  PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: ank:AnaeK_3014 UBA/ThiF-type NAD/FAD binding protein.


ensembl_gene_id: Amir_0939
symbol: Amir_0939
gene_biotype: protein_coding
description:
  PFAM: PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: bha:BH2586 hypothetical protein.


ensembl_gene_id: Amir_0941
symbol: Amir_0941
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function UPF0182; KEGG: reh:H16_A1615 hypothetical membrane spanning protein.


ensembl_gene_id: Amir_0944
symbol: prfB
gene_biotype: protein_coding
description:
  Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.


ensembl_gene_id: Amir_0945
symbol: ftsE
gene_biotype: protein_coding
description:
  Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.


ensembl_gene_id: Amir_0946
symbol: Amir_0946
gene_biotype: protein_coding
description:
  Cell division protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.


ensembl_gene_id: Amir_0947
symbol: smpB
gene_biotype: protein_coding
description:
  SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]


ensembl_gene_id: Amir_0949
symbol: Amir_0949
gene_biotype: protein_coding
description:
  PFAM: histidine kinase dimerization and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: sus:Acid_2792 PAS/PAC sensor signal transduction histidine kinase.


ensembl_gene_id: Amir_0951
symbol: Amir_0951
gene_biotype: protein_coding
description:
  KEGG: rce:RC1_1438 ATP-dependent helicase protein, putative; TIGRFAM: ATP-dependent helicase HrpB; PFAM: Helicase ATP-dependent domain protein; helicase domain protein; helicase-associated domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.


ensembl_gene_id: Amir_0954
symbol: Amir_0954
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: afw:Anae109_0137 major facilitator transporter.


ensembl_gene_id: Amir_0957
symbol: Amir_0957
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: bsu:BSU15770 protein kinase.


ensembl_gene_id: Amir_0958
symbol: Amir_0958
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF450; SMART: DEAD-like helicase; KEGG: tbd:Tbd_2685 DEAD/DEAH box helicase.


ensembl_gene_id: Amir_0959
symbol: Amir_0959
gene_biotype: protein_coding
description:
  PFAM: restriction modification system DNA specificity domain; KEGG: rsh:Rsph17029_1858 restriction modification system DNA specificity subunit.


ensembl_gene_id: Amir_0966
symbol: Amir_0966
gene_biotype: protein_coding
description:
  PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sus:Acid_4295 response regulator receiver modulated serine phosphatase.


ensembl_gene_id: Amir_0968
symbol: Amir_0968
gene_biotype: protein_coding
description:
  Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: swi:Swit_1492 anti-sigma-factor antagonist.


ensembl_gene_id: Amir_0970
symbol: Amir_0970
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: smd:Smed_3329 extracellular solute-binding protein family 1.


ensembl_gene_id: Amir_0971
symbol: Amir_0971
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sugar ABC transporter; K02025 multiple sugar transport system permease protein.


ensembl_gene_id: Amir_0972
symbol: Amir_0972
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc04137 putative transport system permease ABC transporter protein.


ensembl_gene_id: Amir_0975
symbol: Amir_0975
gene_biotype: protein_coding
description:
  PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: aav:Aave_4199 transcriptional regulator, LacI family.


ensembl_gene_id: Amir_0976
symbol: Amir_0976
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: Tetratricopeptide TPR_2 repeat protein; Tetratricopeptide TPR_4; TPR repeat-containing protein; SMART: helix-turn-helix domain protein; Tetratricopeptide domain protein; KEGG: scl:sce6858 hypothetical protein.


ensembl_gene_id: Amir_0977
symbol: Amir_0977
gene_biotype: protein_coding
description:
  PFAM: Terpene synthase metal-binding domain protein; KEGG: mxa:MXAN_6247 terpene synthase, metal binding domain protein.


ensembl_gene_id: Amir_0980
symbol: Amir_0980
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: afw:Anae109_0769 heat shock protein DnaJ domain-containing protein.


ensembl_gene_id: Amir_0983
symbol: Amir_0983
gene_biotype: protein_coding
description:
  PFAM: Acyl-CoA dehydrogenase type 2 domain; KEGG: azc:AZC_3175 putative FMNH2-dependent monooxygenase.


ensembl_gene_id: Amir_0984
symbol: Amir_0984
gene_biotype: protein_coding
description:
  eIF-2B alpha/beta/delta-related uncharacterized protein; KEGG: aba:Acid345_1175 translation initiation factor 2B subunit I family (IF-2BI); TIGRFAM: eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related; Belongs to the eIF-2B alpha/beta/delta subunits family.


ensembl_gene_id: Amir_0985
symbol: mtnC
gene_biotype: protein_coding
description:
  2,3-diketo-5-methylthio-1-phosphopentanephosphat ase; Bifunctional enzyme that catalyzes the enolization of 2,3- diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK- MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene). Belongs to the HAD-like hydrolase superfamily. MasA/MtnC family.


ensembl_gene_id: Amir_0986
symbol: mtnB
gene_biotype: protein_coding
description:
  Methylthioribulose-1-phosphate dehydratase; Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P). Belongs to the aldolase class II family. MtnB subfamily.


ensembl_gene_id: Amir_0987
symbol: mtnD
gene_biotype: protein_coding
description:
  Acireductone dioxygenase ARD; Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway.


ensembl_gene_id: Amir_0989
symbol: Amir_0989
gene_biotype: protein_coding
description:
  Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.


ensembl_gene_id: Amir_0990
symbol: Amir_0990
gene_biotype: protein_coding
description:
  Phosphoserine phosphatase SerB; KEGG: scl:sce0663 hypothetical protein; TIGRFAM: phosphoserine phosphatase SerB; HAD- superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; amino acid-binding ACT domain protein.


ensembl_gene_id: Amir_0991
symbol: Amir_0991
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function UPF0099; KEGG: predicted protein; K04794 peptidyl-tRNA hydrolase, PTH2 family.


ensembl_gene_id: Amir_0994
symbol: Amir_0994
gene_biotype: protein_coding
description:
  KEGG: phospholipase/phosphatidylserine synthase; PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase.


ensembl_gene_id: Amir_0997
symbol: Amir_0997
gene_biotype: protein_coding
description:
  Glycosyltransferase probably involved in cell wall biogenesis; KEGG: cak:Caul_0228 polysaccharide deacetylase.


ensembl_gene_id: Amir_1001
symbol: Amir_1001
gene_biotype: protein_coding
description:
  KEGG: rso:RSp0510 UDP-N-acetylglucosamine 2- epimerase protein; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.


ensembl_gene_id: Amir_1003
symbol: Amir_1003
gene_biotype: protein_coding
description:
  PFAM: isochorismatase hydrolase; KEGG: sme:SMc02275 pyrazinamidase/nicotinamidase (includes: pyrazinamidase, nicotinamidase) protein.


ensembl_gene_id: Amir_1004
symbol: Amir_1004
gene_biotype: protein_coding
description:
  Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.


ensembl_gene_id: Amir_1005
symbol: clpS
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.


ensembl_gene_id: Amir_1009
symbol: Amir_1009
gene_biotype: protein_coding
description:
  PFAM: Mov34/MPN/PAD-1 family protein; SMART: Mov34/MPN/PAD-1 family protein; KEGG: nmu:Nmul_A0971 Mov34/MPN/PAD-1.


ensembl_gene_id: Amir_1011
symbol: Amir_1011
gene_biotype: protein_coding
description:
  TIGRFAM: cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: reh:H16_A0807 cysteine synthase.


ensembl_gene_id: Amir_1013
symbol: Amir_1013
gene_biotype: protein_coding
description:
  PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: sal:Sala_3160 senescence marker protein-30 (SMP-30).


ensembl_gene_id: Amir_1020
symbol: rph
gene_biotype: protein_coding
description:
  Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.


ensembl_gene_id: Amir_1021
symbol: Amir_1021
gene_biotype: protein_coding
description:
  Non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.


ensembl_gene_id: Amir_1023
symbol: Amir_1023
gene_biotype: protein_coding
description:
  PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: yen:YE1135 thioredoxin-dependent thiol peroxidase.


ensembl_gene_id: Amir_1026
symbol: Amir_1026
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: oan:Oant_2127 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Amir_1028
symbol: Amir_1028
gene_biotype: protein_coding
description:
  PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: vvu:VV1_0002 putative GTPase.


ensembl_gene_id: Amir_1032
symbol: Amir_1032
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: rso:RSc0624 zinc-dependent alcohol dehydrogenase oxidoreductase protein.


ensembl_gene_id: Amir_1033
symbol: Amir_1033
gene_biotype: protein_coding
description:
  PFAM: CobB/CobQ domain protein glutamine amidotransferase; KEGG: rsh:Rsph17029_3564 cobyric acid synthase.


ensembl_gene_id: Amir_1034
symbol: Amir_1034
gene_biotype: protein_coding
description:
  PFAM: domain of unknown function DUF1727; Mur ligase middle domain protein; KEGG: ilo:IL0432 UDP-N-acetylmuramyl pentapeptide synthase.


ensembl_gene_id: Amir_1035
symbol: Amir_1035
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: reu:Reut_A1326 anaerobic benzoate catabolism transcriptional regulator.


ensembl_gene_id: Amir_1037
symbol: Amir_1037
gene_biotype: protein_coding
description:
  TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: bce:BC5265 membrane-bound transcriptional regulator LytR.


ensembl_gene_id: Amir_1038
symbol: glyS
gene_biotype: protein_coding
description:
  glycyl-tRNA synthetase, beta subunit; KEGG: hypothetical protein; K01878 glycyl-tRNA synthetase alpha chain; TIGRFAM: glycyl-tRNA synthetase, beta subunit; glycyl-tRNA synthetase, alpha subunit; PFAM: glycyl-tRNA synthetase alpha subunit; glycyl- tRNA synthetase beta subunit.


ensembl_gene_id: Amir_1040
symbol: Amir_1040
gene_biotype: protein_coding
description:
  Monosaccharide-transporting ATPase; KEGG: rpi:Rpic_4074 D-xylose ABC transporter, periplasmic substrate-binding protein.


ensembl_gene_id: Amir_1042
symbol: Amir_1042
gene_biotype: protein_coding
description:
  PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: mpt:Mpe_A2202 cold-shock DNA-binding protein family protein.


ensembl_gene_id: Amir_1044
symbol: Amir_1044
gene_biotype: protein_coding
description:
  Alpha-galactosidase; KEGG: aba:Acid345_1677 alpha-galactosidase; PFAM: Glycosyl hydrolase family 98 putative carbohydrate binding module; glycoside hydrolase clan GH- D; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module.


ensembl_gene_id: Amir_1045
symbol: Amir_1045
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: sse:Ssed_3347 acyl-CoA dehydrogenase-like protein.


ensembl_gene_id: Amir_1047
symbol: Amir_1047
gene_biotype: protein_coding
description:
  Non-specific serine/threonine protein kinase; KEGG: scl:sce3369 SWF/SNF family helicase; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.


ensembl_gene_id: Amir_1050
symbol: Amir_1050
gene_biotype: protein_coding
description:
  TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: sfu:Sfum_2797 DNA-cytosine methyltransferase.


ensembl_gene_id: Amir_1051
symbol: Amir_1051
gene_biotype: protein_coding
description:
  TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; KEGG: ajs:Ajs_2197 putative very short patch repair protein.


ensembl_gene_id: Amir_1055
symbol: Amir_1055
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ank:AnaeK_1721 ABC transporter-related protein.


ensembl_gene_id: Amir_1056
symbol: orn
gene_biotype: protein_coding
description:
  Exonuclease RNase T and DNA polymerase III; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family.


ensembl_gene_id: Amir_1058
symbol: Amir_1058
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bac:BamMC406_2532 AraC family transcriptional regulator.


ensembl_gene_id: Amir_1059
symbol: Amir_1059
gene_biotype: protein_coding
description:
  Transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; KEGG: cak:Caul_0312 DeoR family transcriptional regulator.


ensembl_gene_id: Amir_1060
symbol: Amir_1060
gene_biotype: protein_coding
description:
  TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; KEGG: gbm:Gbem_3234 1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: Amir_1061
symbol: Amir_1061
gene_biotype: protein_coding
description:
  Putative PTS IIA-like nitrogen-regulatory protein PtsN; TIGRFAM: PTS system, fructose subfamily, IIA subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: vco:VC0395_A1421 PTS system, fructose- specific IIABC component.


ensembl_gene_id: Amir_1062
symbol: Amir_1062
gene_biotype: protein_coding
description:
  TIGRFAM: PTS system, fructose subfamily, IIC subunit; PTS system, fructose-specific, IIB subunnit; PFAM: phosphotransferase system PTS fructose- specific IIB subunit; phosphotransferase system EIIC; KEGG: rsh:Rsph17029_0435 PTS system, fructose subfamily, IIC subunit.


ensembl_gene_id: Amir_1066
symbol: Amir_1066
gene_biotype: protein_coding
description:
  PFAM: AMP-dependent synthetase and ligase; KEGG: bur:Bcep18194_C6898 AMP-dependent synthetase and ligase.


ensembl_gene_id: Amir_1068
symbol: Amir_1068
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: atc:AGR_C_466 hypothetical protein.


ensembl_gene_id: Amir_1069
symbol: azoR
gene_biotype: protein_coding
description:
  NAD(P)H dehydrogenase (quinone); Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family.


ensembl_gene_id: Amir_1071
symbol: Amir_1071
gene_biotype: protein_coding
description:
  PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: bcm:Bcenmc03_0217 TPR repeat-containing protein.


ensembl_gene_id: Amir_1073
symbol: secF
gene_biotype: protein_coding
description:
  Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.


ensembl_gene_id: Amir_1074
symbol: Amir_1074
gene_biotype: protein_coding
description:
  Lactate 2-monooxygenase; PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: hypothetical protein; K00101 L-lactate dehydrogenase (cytochrome).


ensembl_gene_id: Amir_1076
symbol: Amir_1076
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: xca:xccb100_0257 transcriptional regulator, AraC family.


ensembl_gene_id: Amir_1077
symbol: Amir_1077
gene_biotype: protein_coding
description:
  PFAM: Carbohydrate binding family 6; glycoside hydrolase family 16; SMART: cellulose binding type IV; KEGG: hypothetical protein.


ensembl_gene_id: Amir_1078
symbol: Amir_1078
gene_biotype: protein_coding
description:
  PFAM: DNA-directed DNA polymerase; SMART: DNA-directed DNA polymerase; KEGG: hha:Hhal_2421 DNA polymerase I.


ensembl_gene_id: Amir_1080
symbol: Amir_1080
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: smd:Smed_6054 methyltransferase type 11.


ensembl_gene_id: Amir_1082
symbol: Amir_1082
gene_biotype: protein_coding
description:
  TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: scl:sce4459 1-pyrroline-5-carboxylate dehydrogenase.


ensembl_gene_id: Amir_1084
symbol: Amir_1084
gene_biotype: protein_coding
description:
  PFAM: 60 kDa inner membrane insertion protein; KEGG: gox:GOX1827 putative inner membrane protein translocase component YidC.


ensembl_gene_id: Amir_1088
symbol: Amir_1088
gene_biotype: protein_coding
description:
  Putative phytochrome sensor protein; PFAM: GAF domain protein; transcriptional regulator domain protein; KEGG: rme:Rmet_4104 sigma54 specific transcriptional regulator with GAF sensor, fis family.


ensembl_gene_id: Amir_1089
symbol: Amir_1089
gene_biotype: protein_coding
description:
  PFAM: Aldehyde Dehydrogenase; KEGG: mxa:MXAN_5040 aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: Amir_1091
symbol: Amir_1091
gene_biotype: protein_coding
description:
  Beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; KEGG: cak:Caul_0293 beta-N-acetylhexosaminidase.


ensembl_gene_id: Amir_1092
symbol: Amir_1092
gene_biotype: protein_coding
description:
  PFAM: CHAD domain containing protein; adenylate cyclase; KEGG: reh:H16_B1017 protein of the adenylate cyclase family.


ensembl_gene_id: Amir_1095
symbol: Amir_1095
gene_biotype: protein_coding
description:
  PFAM: formyl transferase domain protein; KEGG: kpe:KPK_0268 UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase.


ensembl_gene_id: Amir_1098
symbol: clpP
gene_biotype: protein_coding
description:
  Endopeptidase Clp; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.


ensembl_gene_id: Amir_1101
symbol: Amir_1101
gene_biotype: protein_coding
description:
  PFAM: filamentation induced by cAMP protein Fic; KEGG: pol:Bpro_0315 filamentation induced by cAMP protein Fic.


ensembl_gene_id: Amir_1102
symbol: Amir_1102
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: gur:Gura_1136 helix-turn-helix domain- containing protein.


ensembl_gene_id: Amir_1103
symbol: Amir_1103
gene_biotype: protein_coding
description:
  PFAM: NUDIX hydrolase; KEGG: bba:Bd2755 putative ATP/GTP-binding protein; Belongs to the Nudix hydrolase family.


ensembl_gene_id: Amir_1108
symbol: Amir_1108
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: dac:Daci_0148 histidine utilization repressor.


ensembl_gene_id: Amir_1118
symbol: Amir_1118
gene_biotype: protein_coding
description:
  PFAM: integrase family protein; KEGG: xau:Xaut_0620 integrase family protein; Belongs to the 'phage' integrase family.


ensembl_gene_id: Amir_1120
symbol: Amir_1120
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: rce:RC1_3733 major facilitator superfamily (MSF) transporter, putative.


ensembl_gene_id: Amir_1124
symbol: Amir_1124
gene_biotype: protein_coding
description:
  KEGG: aeh:Mlg_2715 daunorubicin resistance ABC transporter ATPase subunit; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Amir_1126
symbol: Amir_1126
gene_biotype: protein_coding
description:
  TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: ajs:Ajs_4211 single-strand binding protein.


ensembl_gene_id: Amir_1127
symbol: Amir_1127
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcs:BCAN_A1491 putative ABC transporter ATP- binding protein.


ensembl_gene_id: Amir_1130
symbol: Amir_1130
gene_biotype: protein_coding
description:
  PFAM: alpha amylase catalytic region; glycoside hydrolase starch-binding; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain; alpha amylase all-beta; KEGG: sde:Sde_2938 ATPase.


ensembl_gene_id: Amir_1131
symbol: Amir_1131
gene_biotype: protein_coding
description:
  KEGG: aav:Aave_4199 transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI.


ensembl_gene_id: Amir_1134
symbol: Amir_1134
gene_biotype: protein_coding
description:
  PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: alpha-glucosidase; K01187 alpha-glucosidase.


ensembl_gene_id: Amir_1137
symbol: Amir_1137
gene_biotype: protein_coding
description:
  PFAM: peptidase S9A prolyl oligopeptidase domain protein beta-propeller; peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: scl:sce8590 prolyl oligopeptidase.


ensembl_gene_id: Amir_1142
symbol: Amir_1142
gene_biotype: protein_coding
description:
  TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: scl:sce2331 membrane alanyl aminopeptidase.


ensembl_gene_id: Amir_1145
symbol: Amir_1145
gene_biotype: protein_coding
description:
  TIGRFAM: ribose 5-phosphate isomerase; sugar- phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase; KEGG: mca:MCA0043 ribose 5-phosphate isomerase B.


ensembl_gene_id: Amir_1147
symbol: Amir_1147
gene_biotype: protein_coding
description:
  PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; Formamidopyrimidine-DNA glycosylase catalytic domain protein; KEGG: hypothetical protein; Belongs to the FPG family.


ensembl_gene_id: Amir_1151
symbol: Amir_1151
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bsu:BSU36160 hypothetical protein.


ensembl_gene_id: Amir_1152
symbol: tig
gene_biotype: protein_coding
description:
  Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.


ensembl_gene_id: Amir_1154
symbol: clpX
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.


ensembl_gene_id: Amir_1157
symbol: fdhD
gene_biotype: protein_coding
description:
  Formate dehydrogenase family accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.


ensembl_gene_id: Amir_1158
symbol: Amir_1158
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: nma:NMA1574 putative integral membrane transporter.


ensembl_gene_id: Amir_1162
symbol: Amir_1162
gene_biotype: protein_coding
description:
  KEGG: mxa:MXAN_4341 oxidoreductase alpha (molybdopterin) subunit; TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: Amir_1165
symbol: valS
gene_biotype: protein_coding
description:
  valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.


ensembl_gene_id: Amir_1166
symbol: Amir_1166
gene_biotype: protein_coding
description:
  TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: gme:Gmet_2475 folylpolyglutamate synthetase.


ensembl_gene_id: Amir_1170
symbol: Amir_1170
gene_biotype: protein_coding
description:
  KEGG: aba:Acid345_2329 alpha-1,6-glucosidases, pullulanase-type; TIGRFAM: alpha-1,6-glucosidase, pullulanase-type; PFAM: alpha amylase catalytic region; pullanase- associated protein; glycoside hydrolase family 13 domain protein; SMART: alpha amylase catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.


ensembl_gene_id: Amir_1172
symbol: ndk
gene_biotype: protein_coding
description:
  Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.


ensembl_gene_id: Amir_1175
symbol: Amir_1175
gene_biotype: protein_coding
description:
  PFAM: ABC-2 type transporter; KEGG: afr:AFE_3235 ABC-2 type transporter, permease protein, NodJ family.


ensembl_gene_id: Amir_1176
symbol: Amir_1176
gene_biotype: protein_coding
description:
  PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pca:Pcar_2585 Fe-S oxidoreductase.


ensembl_gene_id: Amir_1177
symbol: Amir_1177
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: aba:Acid345_1825 sigma-24, ECF subfamily.


ensembl_gene_id: Amir_1178
symbol: Amir_1178
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: regulatory protein LuxR; Tetratricopeptide domain protein; KEGG: ade:Adeh_3797 hypothetical protein.


ensembl_gene_id: Amir_1181
symbol: Amir_1181
gene_biotype: protein_coding
description:
  PFAM: Ferric reductase domain protein transmembrane component domain; KEGG: prw:PsycPRwf_0697 ferric reductase-like protein.


ensembl_gene_id: Amir_1184
symbol: Amir_1184
gene_biotype: protein_coding
description:
  PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: acp:A2cp1_0256 peptidase S8 and S53 subtilisin kexin sedolisin; Belongs to the peptidase S8 family.


ensembl_gene_id: Amir_1186
symbol: Amir_1186
gene_biotype: protein_coding
description:
  Ribonuclease, Rne/Rng family; KEGG: sde:Sde_3188 RNAse G; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: translation initiation factor IF-2 domain protein; SMART: RNA binding S1 domain protein.


ensembl_gene_id: Amir_1187
symbol: rplU
gene_biotype: protein_coding
description:
  Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.


ensembl_gene_id: Amir_1188
symbol: rpmA
gene_biotype: protein_coding
description:
  TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: smt:Smal_1120 ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.


ensembl_gene_id: Amir_1189
symbol: obg
gene_biotype: protein_coding
description:
  GTP-binding protein Obg/CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.


ensembl_gene_id: Amir_1190
symbol: proB
gene_biotype: protein_coding
description:
  Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.


ensembl_gene_id: Amir_1191
symbol: Amir_1191
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: bav:BAV1823 alpha-ketoglutarate permease.


ensembl_gene_id: Amir_1193
symbol: Amir_1193
gene_biotype: protein_coding
description:
  KEGG: maq:Maqu_0559 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.


ensembl_gene_id: Amir_1194
symbol: proA
gene_biotype: protein_coding
description:
  Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.


ensembl_gene_id: Amir_1197
symbol: nadD
gene_biotype: protein_coding
description:
  Nicotinate (nicotinamide) nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).


ensembl_gene_id: Amir_1198
symbol: rsfS
gene_biotype: protein_coding
description:
  Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.


ensembl_gene_id: Amir_1199
symbol: Amir_1199
gene_biotype: protein_coding
description:
  PFAM: Phosphoglycerate mutase; KEGG: reh:H16_A0493 phosphoglycerate mutase 2 protein; Belongs to the phosphoglycerate mutase family.


ensembl_gene_id: Amir_1202
symbol: Amir_1202
gene_biotype: protein_coding
description:
  TIGRFAM: competence protein ComEA helix-hairpin- helix repeat protein; PFAM: helix-hairpin-helix motif; KEGG: bsu:BSU25590 unspecific high-affinity DNA- binding protein.


ensembl_gene_id: Amir_1203
symbol: Amir_1203
gene_biotype: protein_coding
description:
  TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; beta-lactamase domain protein; KEGG: ank:AnaeK_2593 DNA internalization-related competence protein ComEC/Rec2.


ensembl_gene_id: Amir_1205
symbol: Amir_1205
gene_biotype: protein_coding
description:
  TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: afw:Anae109_3605 threonine synthase.


ensembl_gene_id: Amir_1206
symbol: Amir_1206
gene_biotype: protein_coding
description:
  TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: gbm:Gbem_0755 DNA polymerase III, delta subunit.


ensembl_gene_id: Amir_1209
symbol: Amir_1209
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sfr:Sfri_0263 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Amir_1213
symbol: Amir_1213
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: aba:Acid345_3320 protein of unknown function DUF404.


ensembl_gene_id: Amir_1214
symbol: Amir_1214
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF403; KEGG: aba:Acid345_3319 protein of unknown function DUF403.


ensembl_gene_id: Amir_1215
symbol: Amir_1215
gene_biotype: protein_coding
description:
  PFAM: transglutaminase domain protein; transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: ccs:CCNA_01672 transglutaminase-like enzyme, putative cysteine.


ensembl_gene_id: Amir_1216
symbol: lepA
gene_biotype: protein_coding
description:
  GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.


ensembl_gene_id: Amir_1220
symbol: Amir_1220
gene_biotype: protein_coding
description:
  PFAM: Carbohydrate-binding CenC domain protein; glycoside hydrolase family 18; SMART: chitinase II; KEGG: cja:CJA_2993 endo-chitinase, putative, chi18C; Belongs to the glycosyl hydrolase 18 family.


ensembl_gene_id: Amir_1225
symbol: Amir_1225
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: xcv:XCV2170 putative oxidoreductase.


ensembl_gene_id: Amir_1227
symbol: Amir_1227
gene_biotype: protein_coding
description:
  PFAM: guanine-specific ribonuclease N1 and T1; KEGG: tmz:Tmz1t_1168 guanine-specific ribonuclease N1 and T1.


ensembl_gene_id: Amir_1231
symbol: Amir_1231
gene_biotype: protein_coding
description:
  PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: cvi:CV_1567 precorrin-8X methylmutase.


ensembl_gene_id: Amir_1232
symbol: Amir_1232
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aba:Acid345_0827 ABC aliphatic sulfonate transporter, inner membrane subunit.


ensembl_gene_id: Amir_1233
symbol: Amir_1233
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_0826 ABC transporter, ATPase subunit.


ensembl_gene_id: Amir_1234
symbol: Amir_1234
gene_biotype: protein_coding
description:
  TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; KEGG: afw:Anae109_0427 aliphatic sulfonate ABC transporter periplasmic ligand-binding protein.


ensembl_gene_id: Amir_1235
symbol: Amir_1235
gene_biotype: protein_coding
description:
  Sulfate adenylyltransferase, large subunit; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.


ensembl_gene_id: Amir_1236
symbol: Amir_1236
gene_biotype: protein_coding
description:
  TIGRFAM: sulfate adenylyltransferase, small subunit; PFAM: phosphoadenosine phosphosulfate reductase; KEGG: noc:Noc_2289 sulfate adenylyltransferase subunit 2.


ensembl_gene_id: Amir_1237
symbol: Amir_1237
gene_biotype: protein_coding
description:
  Adenylylsulfate reductase, thioredoxin dependent; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.


ensembl_gene_id: Amir_1239
symbol: Amir_1239
gene_biotype: protein_coding
description:
  Sulfite reductase (ferredoxin); PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: aba:Acid345_2373 nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like.


ensembl_gene_id: Amir_1240
symbol: Amir_1240
gene_biotype: protein_coding
description:
  Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: Amir_1241
symbol: hrcA
gene_biotype: protein_coding
description:
  Heat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons.


ensembl_gene_id: Amir_1242
symbol: dnaJ
gene_biotype: protein_coding
description:
  Chaperone DnaJ domain protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between  [...]


ensembl_gene_id: Amir_1243
symbol: Amir_1243
gene_biotype: protein_coding
description:
  Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.


ensembl_gene_id: Amir_1249
symbol: Amir_1249
gene_biotype: protein_coding
description:
  PFAM: PhoH family protein; SMART: Hedgehog/intein hint domain protein; KEGG: mxa:MXAN_4738 PhoH family protein.


ensembl_gene_id: Amir_1250
symbol: ybeY
gene_biotype: protein_coding
description:
  Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.


ensembl_gene_id: Amir_1251
symbol: Amir_1251
gene_biotype: protein_coding
description:
  PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; SMART: CBS domain containing protein; KEGG: scl:sce4286 hypothetical protein.


ensembl_gene_id: Amir_1254
symbol: era
gene_biotype: protein_coding
description:
  GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.


ensembl_gene_id: Amir_1261
symbol: Amir_1261
gene_biotype: protein_coding
description:
  Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: gur:Gura_3002 ferric uptake regulator family protein; Belongs to the Fur family.


ensembl_gene_id: Amir_1262
symbol: Amir_1262
gene_biotype: protein_coding
description:
  Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: pla:Plav_2471 regulatory protein ArsR.


ensembl_gene_id: Amir_1266
symbol: glyQS
gene_biotype: protein_coding
description:
  glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: Amir_1268
symbol: Amir_1268
gene_biotype: protein_coding
description:
  Carbonate dehydratase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.


ensembl_gene_id: Amir_1269
symbol: Amir_1269
gene_biotype: protein_coding
description:
  PFAM: sulphate transporter; Xanthine/uracil/vitamin C permease; KEGG: psa:PST_4161 probable sulfate transporter.


ensembl_gene_id: Amir_1270
symbol: Amir_1270
gene_biotype: protein_coding
description:
  PFAM: proteinase inhibitor I4 serpin; SMART: proteinase inhibitor I4 serpin; KEGG: scl:sce5377 hypothetical protein.


ensembl_gene_id: Amir_1271
symbol: Amir_1271
gene_biotype: protein_coding
description:
  KEGG: aba:Acid345_0225 deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; Belongs to the dGTPase family. Type 2 subfamily.


ensembl_gene_id: Amir_1272
symbol: Amir_1272
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF218; KEGG: aba:Acid345_2611 protein of unknown function DUF218.


ensembl_gene_id: Amir_1274
symbol: Amir_1274
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: mno:Mnod_3704 RNA polymerase, sigma-24 subunit, ECF subfamily.


ensembl_gene_id: Amir_1275
symbol: dnaG
gene_biotype: protein_coding
description:
  DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.


ensembl_gene_id: Amir_1280
symbol: Amir_1280
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: rme:Rmet_2856 transcriptional regulator, histidine utilization repressor, GntR family.


ensembl_gene_id: Amir_1281
symbol: Amir_1281
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: afw:Anae109_2699 response regulator receiver.


ensembl_gene_id: Amir_1284
symbol: Amir_1284
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: dar:Daro_2866 GntR family transcriptional regulator.


ensembl_gene_id: Amir_1294
symbol: Amir_1294
gene_biotype: protein_coding
description:
  PFAM: integrase family protein; KEGG: bat:BAS0415 prophage LambdaBa04, site- specific recombinase phage integrase family protein protein; Belongs to the 'phage' integrase family.


ensembl_gene_id: Amir_1297
symbol: tam
gene_biotype: protein_coding
description:
  Trans-aconitate 2-methyltransferase; Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate.


ensembl_gene_id: Amir_1301
symbol: Amir_1301
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 2; polysaccharide deacetylase; KEGG: mno:Mnod_3023 polysaccharide deacetylase.


ensembl_gene_id: Amir_1303
symbol: Amir_1303
gene_biotype: protein_coding
description:
  Nitric-oxide synthase; Catalyzes the production of nitric oxide. Belongs to the NOS family. Bacterial NOS oxygenase subfamily.


ensembl_gene_id: Amir_1304
symbol: Amir_1304
gene_biotype: protein_coding
description:
  PFAM: alanine dehydrogenase/PNT domain protein; KEGG: eba:ebA4497 pyridine nucleotide transhydrogenase alpha subunit.


ensembl_gene_id: Amir_1306
symbol: Amir_1306
gene_biotype: protein_coding
description:
  KEGG: dvm:DvMF_0211 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; EAL domain protein; PAS domain containing protein.


ensembl_gene_id: Amir_1307
symbol: Amir_1307
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF574; Methyltransferase type 12; KEGG: scl:sce6070 hypothetical protein.


ensembl_gene_id: Amir_1308
symbol: Amir_1308
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bmj:BMULJ_04432 MarR family transcriptional regulator.


ensembl_gene_id: Amir_1309
symbol: crcB
gene_biotype: protein_coding
description:
  Camphor resistance CrcB protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.


ensembl_gene_id: Amir_1310
symbol: crcB-2
gene_biotype: protein_coding
description:
  CrcB protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.


ensembl_gene_id: Amir_1311
symbol: Amir_1311
gene_biotype: protein_coding
description:
  Superfamily I DNA and RNA helicase-like protein; KEGG: bcr:BCAH187_A2861 UvrD/Rep helicase family protein.


ensembl_gene_id: Amir_1312
symbol: Amir_1312
gene_biotype: protein_coding
description:
  2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: dvm:DvMF_2927 2-hydroxy-3-oxopropionate reductase.


ensembl_gene_id: Amir_1315
symbol: Amir_1315
gene_biotype: protein_coding
description:
  PFAM: pyridine nucleotide-disulphide oxidoreductase dimerization region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; glucose-inhibited division protein A; FAD dependent oxidoreductase; KEGG: mxa:MXAN_0278 mercuric reductase, truncated.


ensembl_gene_id: Amir_1319
symbol: Amir_1319
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pzu:PHZ_c3203 ABC transporter, HlyB/MsbA family.


ensembl_gene_id: Amir_1322
symbol: Amir_1322
gene_biotype: protein_coding
description:
  Serine/threonine protein kinase; PFAM: Lanthionine synthetase C family protein; SMART: serine/threonine protein kinase; KEGG: smt:Smal_2130 serine/threonine protein kinase.


ensembl_gene_id: Amir_1324
symbol: Amir_1324
gene_biotype: protein_coding
description:
  Beta-ketoacyl synthase; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.


ensembl_gene_id: Amir_1326
symbol: fabH
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.


ensembl_gene_id: Amir_1328
symbol: Amir_1328
gene_biotype: protein_coding
description:
  Putative transcriptional regulator, PucR family; KEGG: reu:Reut_B5661 CdaR family transcriptional regulator.


ensembl_gene_id: Amir_1330
symbol: Amir_1330
gene_biotype: protein_coding
description:
  TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: mpt:Mpe_A2849 putative transporter.


ensembl_gene_id: Amir_1331
symbol: Amir_1331
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: mxa:MXAN_7295 putative sugar ABC transporter, periplasmic sugar-binding protein.


ensembl_gene_id: Amir_1333
symbol: Amir_1333
gene_biotype: protein_coding
description:
  2-oxo-acid dehydrogenase E1 subunit, homodimeric type; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).


ensembl_gene_id: Amir_1336
symbol: Amir_1336
gene_biotype: protein_coding
description:
  PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pzu:PHZ_p0072 peroxiredoxin.


ensembl_gene_id: Amir_1340
symbol: lipA
gene_biotype: protein_coding
description:
  Lipoic acid synthetase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.


ensembl_gene_id: Amir_1341
symbol: Amir_1341
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bid:Bind_0032 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Amir_1344
symbol: lipB
gene_biotype: protein_coding
description:
  Lipoate-protein ligase B; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.


ensembl_gene_id: Amir_1348
symbol: Amir_1348
gene_biotype: protein_coding
description:
  PFAM: phosphoesterase PA-phosphatase related; KEGG: ade:Adeh_2905 phosphoesterase, PA-phosphatase related.


ensembl_gene_id: Amir_1349
symbol: Amir_1349
gene_biotype: protein_coding
description:
  PFAM: domain of unknown function DUF1731; NAD- dependent epimerase/dehydratase; KEGG: dal:Dalk_2335 domain of unknown function DUF1731.


ensembl_gene_id: Amir_1350
symbol: Amir_1350
gene_biotype: protein_coding
description:
  KEGG: aba:Acid345_4350 2-oxoglutarate dehydrogenase E2 component; TIGRFAM: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain- containing protein; E3 binding domain protein.


ensembl_gene_id: Amir_1351
symbol: Amir_1351
gene_biotype: protein_coding
description:
  TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerization region; glucose-inhibited division protein A; FAD dependent oxidoreductase; KEGG: bcy:Bcer98_2857 dihydrolipoamide dehydrogenase.


ensembl_gene_id: Amir_1354
symbol: pepA
gene_biotype: protein_coding
description:
  Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.


ensembl_gene_id: Amir_1356
symbol: Amir_1356
gene_biotype: protein_coding
description:
  KEGG: swi:Swit_0778 branched-chain amino acid aminotransferase; TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV.


ensembl_gene_id: Amir_1357
symbol: cobS
gene_biotype: protein_coding
description:
  Cobalamin 5'-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.


ensembl_gene_id: Amir_1358
symbol: cobT
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide/dimethylbenzimidazolephosp horibosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).


ensembl_gene_id: Amir_1364
symbol: Amir_1364
gene_biotype: protein_coding
description:
  TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: bvi:Bcep1808_0647 iron-sulfur cluster insertion protein ErpA; Belongs to the HesB/IscA family.


ensembl_gene_id: Amir_1366
symbol: Amir_1366
gene_biotype: protein_coding
description:
  KEGG: bsu:BSU30540 asparagine synthetase; TIGRFAM: asparagine synthase (glutamine- hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II.


ensembl_gene_id: Amir_1367
symbol: Amir_1367
gene_biotype: protein_coding
description:
  Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).


ensembl_gene_id: Amir_1368
symbol: Amir_1368
gene_biotype: protein_coding
description:
  Cytochrome-c oxidase; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.


ensembl_gene_id: Amir_1369
symbol: Amir_1369
gene_biotype: protein_coding
description:
  PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: gsu:GSU3116 1-acyl-sn-glycerol-3-phosphate acyltransferase, putative.


ensembl_gene_id: Amir_1370
symbol: trpD
gene_biotype: protein_coding
description:
  Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).


ensembl_gene_id: Amir_1378
symbol: Amir_1378
gene_biotype: protein_coding
description:
  KEGG: tbd:Tbd_0827 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; Excinuclease ABC C subunit domain protein; SMART: Exonuclease; Excinuclease ABC C subunit domain protein.


ensembl_gene_id: Amir_1383
symbol: Amir_1383
gene_biotype: protein_coding
description:
  PFAM: AMP-dependent synthetase and ligase; KEGG: acp:A2cp1_1619 AMP-dependent synthetase and ligase.


ensembl_gene_id: Amir_1390
symbol: Amir_1390
gene_biotype: protein_coding
description:
  Putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: predicted gene, 100042292.


ensembl_gene_id: Amir_1392
symbol: Amir_1392
gene_biotype: protein_coding
description:
  PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: phospholipid/glycerol acyltransferase.


ensembl_gene_id: Amir_1394
symbol: pfp
gene_biotype: protein_coding
description:
  Phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP- PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions.


ensembl_gene_id: Amir_1395
symbol: Amir_1395
gene_biotype: protein_coding
description:
  Phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: rce:RC1_0952 3-deoxy-7-phosphoheptulonate synthase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase class II.


ensembl_gene_id: Amir_1396
symbol: Amir_1396
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; protein of unknown function RIO1; PASTA domain containing protein; SMART: serine/threonine protein kinase; tyrosine protein kinase; PASTA domain containing protein; KEGG: bha:BH2504 serine/threonine protein kinase.


ensembl_gene_id: Amir_1399
symbol: Amir_1399
gene_biotype: protein_coding
description:
  TIGRFAM: phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: mxa:MXAN_0895 phytoene desaturase.


ensembl_gene_id: Amir_1400
symbol: Amir_1400
gene_biotype: protein_coding
description:
  PFAM: Polyprenyl synthetase; KEGG: scl:sce4204 geranyltranstransferase; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: Amir_1401
symbol: Amir_1401
gene_biotype: protein_coding
description:
  KEGG: acr:Acry_0219 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.


ensembl_gene_id: Amir_1402
symbol: Amir_1402
gene_biotype: protein_coding
description:
  Alkylhydroperoxidase like protein, AhpD family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.


ensembl_gene_id: Amir_1407
symbol: Amir_1407
gene_biotype: protein_coding
description:
  PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: bur:Bcep18194_A6310 YbaK/prolyl-tRNA synthetase like protein.


ensembl_gene_id: Amir_1411
symbol: Amir_1411
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; KEGG: gme:Gmet_0062 GntR family transcriptional regulator.


ensembl_gene_id: Amir_1412
symbol: Amir_1412
gene_biotype: protein_coding
description:
  KEGG: bmn:BMA10247_A1385 1-aminocyclopropane-1- carboxylate deaminase; TIGRFAM: 1-aminocyclopropane-1-carboxylate deaminase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit.


ensembl_gene_id: Amir_1413
symbol: Amir_1413
gene_biotype: protein_coding
description:
  PFAM: DEAD/H associated domain protein; DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; AAA ATPase; KEGG: scl:sce3970 putative ATP-dependent helicase.


ensembl_gene_id: Amir_1416
symbol: Amir_1416
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: bca:BCE_1913 major facilitator superfamily protein.


ensembl_gene_id: Amir_1419
symbol: recA
gene_biotype: protein_coding
description:
  recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.


ensembl_gene_id: Amir_1422
symbol: Amir_1422
gene_biotype: protein_coding
description:
  KEGG: sil:SPO3031 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase.


ensembl_gene_id: Amir_1423
symbol: edd
gene_biotype: protein_coding
description:
  6-phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.


ensembl_gene_id: Amir_1426
symbol: Amir_1426
gene_biotype: protein_coding
description:
  PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: aba:Acid345_1384 succinate dehydrogenase flavoprotein subunit.


ensembl_gene_id: Amir_1427
symbol: Amir_1427
gene_biotype: protein_coding
description:
  TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; KEGG: aba:Acid345_1385 fumarate reductase iron- sulfur subunit.


ensembl_gene_id: Amir_1431
symbol: Amir_1431
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.


ensembl_gene_id: Amir_1432
symbol: nrdR
gene_biotype: protein_coding
description:
  ATP-cone domain protein; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.


ensembl_gene_id: Amir_1434
symbol: lexA
gene_biotype: protein_coding
description:
  SOS-response transcriptional repressor, LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.


ensembl_gene_id: Amir_1436
symbol: hflX
gene_biotype: protein_coding
description:
  GTP-binding proten HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.


ensembl_gene_id: Amir_1439
symbol: dapF
gene_biotype: protein_coding
description:
  Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.


ensembl_gene_id: Amir_1440
symbol: miaA
gene_biotype: protein_coding
description:
  tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.


ensembl_gene_id: Amir_1441
symbol: Amir_1441
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: ade:Adeh_1392 flagellar biosynthesis/type III secretory pathway protein-like.


ensembl_gene_id: Amir_1444
symbol: miaB
gene_biotype: protein_coding
description:
  RNA modification enzyme, MiaB family; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.


ensembl_gene_id: Amir_1445
symbol: Amir_1445
gene_biotype: protein_coding
description:
  TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: tmz:Tmz1t_0431 TRAP transporter solute receptor, TAXI family.


ensembl_gene_id: Amir_1446
symbol: Amir_1446
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pfl:PFL_3853 sensor histidine kinase.


ensembl_gene_id: Amir_1447
symbol: Amir_1447
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: tbd:Tbd_2791 two component transcriptional regulator.


ensembl_gene_id: Amir_1449
symbol: Amir_1449
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: bce:BC0640 glutamine-binding protein; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: Amir_1450
symbol: Amir_1450
gene_biotype: protein_coding
description:
  TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bca:BCE_0709 amino acid ABC transporter, permease protein.


ensembl_gene_id: Amir_1451
symbol: Amir_1451
gene_biotype: protein_coding
description:
  TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_3754 polar amino acid ABC transporter, inner membrane subunit.


ensembl_gene_id: Amir_1457
symbol: nfi
gene_biotype: protein_coding
description:
  Deoxyribonuclease V; DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA.


ensembl_gene_id: Amir_1458
symbol: Amir_1458
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 4; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: sus:Acid_1925 glycoside hydrolase family protein.


ensembl_gene_id: Amir_1459
symbol: Amir_1459
gene_biotype: protein_coding
description:
  KEGG: aba:Acid345_0045 adenosine deaminase; TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase.


ensembl_gene_id: Amir_1460
symbol: Amir_1460
gene_biotype: protein_coding
description:
  PFAM: peptidase S15; X-Pro dipeptidyl-peptidase domain protein; KEGG: bca:BCE_2891 x-prolyl-dipeptidyl aminopeptidase.


ensembl_gene_id: Amir_1462
symbol: Amir_1462
gene_biotype: protein_coding
description:
  PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: ade:Adeh_0114 peptidase S9, prolyl oligopeptidase.


ensembl_gene_id: Amir_1463
symbol: Amir_1463
gene_biotype: protein_coding
description:
  TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-4- dehydrorhamnose reductase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; KEGG: bha:BH1108 UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.


ensembl_gene_id: Amir_1464
symbol: Amir_1464
gene_biotype: protein_coding
description:
  TIGRFAM: galactokinase; PFAM: GHMP kinase domain protein; GHMP kinase; KEGG: scl:sce2225 hypothetical protein.


ensembl_gene_id: Amir_1465
symbol: Amir_1465
gene_biotype: protein_coding
description:
  PFAM: iron dependent repressor; FeoA family protein; SMART: iron dependent repressor; KEGG: sus:Acid_2178 DtxR family iron dependent repressor.


ensembl_gene_id: Amir_1466
symbol: Amir_1466
gene_biotype: protein_coding
description:
  PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: tbd:Tbd_2489 3-mercaptopyruvate sulfurtransferase.


ensembl_gene_id: Amir_1469
symbol: Amir_1469
gene_biotype: protein_coding
description:
  PFAM: CoA-binding domain protein; GCN5-related N- acetyltransferase; KEGG: mgm:Mmc1_1098 CoA-binding domain protein.


ensembl_gene_id: Amir_1470
symbol: Amir_1470
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: bsu:BSU27440 glutamine ABC transporter (glutamine-binding protein).


ensembl_gene_id: Amir_1471
symbol: Amir_1471
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bha:BH3323 GntR family transcriptional regulator.


ensembl_gene_id: Amir_1485
symbol: Amir_1485
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; short- chain dehydrogenase/reductase SDR; KEGG: pst:PSPTO_1053 hypothetical protein.


ensembl_gene_id: Amir_1486
symbol: Amir_1486
gene_biotype: protein_coding
description:
  PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: bpt:Bpet4676 IclR family transcriptional regulator.


ensembl_gene_id: Amir_1487
symbol: Amir_1487
gene_biotype: protein_coding
description:
  5-dehydro-4-deoxyglucarate dehydratase; PFAM: dihydrodipicolinate synthetase; KEGG: csa:Csal_2487 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.


ensembl_gene_id: Amir_1488
symbol: Amir_1488
gene_biotype: protein_coding
description:
  PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: hypothetical protein; K01706 glucarate dehydratase.


ensembl_gene_id: Amir_1492
symbol: Amir_1492
gene_biotype: protein_coding
description:
  Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.


ensembl_gene_id: Amir_1493
symbol: Amir_1493
gene_biotype: protein_coding
description:
  RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: Amir_1494
symbol: dtd
gene_biotype: protein_coding
description:
  D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family.


ensembl_gene_id: Amir_1495
symbol: Amir_1495
gene_biotype: protein_coding
description:
  PFAM: methyltransferase small; KEGG: sus:Acid_0229 methyltransferase small; Belongs to the methyltransferase superfamily.


ensembl_gene_id: Amir_1498
symbol: Amir_1498
gene_biotype: protein_coding
description:
  PFAM: PfkB domain protein; KEGG: oan:Oant_2477 PfkB domain protein; Belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: Amir_1499
symbol: psuG
gene_biotype: protein_coding
description:
  Indigoidine synthase A family protein; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family.


ensembl_gene_id: Amir_1502
symbol: Amir_1502
gene_biotype: protein_coding
description:
  PFAM: type III restriction protein res subunit; SMART: DEAD-like helicase; KEGG: sde:Sde_1925 GGDEF family protein.


ensembl_gene_id: Amir_1505
symbol: Amir_1505
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: xylH; ABC transporter membrane spanning protein (xylose); Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Amir_1509
symbol: sigA
gene_biotype: protein_coding
description:
  RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.


ensembl_gene_id: Amir_1510
symbol: Amir_1510
gene_biotype: protein_coding
description:
  Polyphosphate--glucose phosphotransferase; PFAM: ROK family protein; KEGG: asa:ASA_3376 ROK family protein.


ensembl_gene_id: Amir_1515
symbol: dut
gene_biotype: protein_coding
description:
  Deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.


ensembl_gene_id: Amir_1520
symbol: Amir_1520
gene_biotype: protein_coding
description:
  PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: rru:Rru_A1681 potassium transporter peripheral membrane component.


ensembl_gene_id: Amir_1521
symbol: Amir_1521
gene_biotype: protein_coding
description:
  PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: asa:ASA_4143 potassium transporter peripheral membrane component.


ensembl_gene_id: Amir_1523
symbol: Amir_1523
gene_biotype: protein_coding
description:
  PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: sus:Acid_5841 23S rRNA (uracil-5-)- methyltransferase RumA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.


ensembl_gene_id: Amir_1524
symbol: dxs
gene_biotype: protein_coding
description:
  Deoxyxylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.


ensembl_gene_id: Amir_1526
symbol: Amir_1526
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: mca:MCA2330 DNA-binding response regulator.


ensembl_gene_id: Amir_1527
symbol: Amir_1527
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: sfu:Sfum_2006 integral membrane sensor signal transduction histidine kinase.


ensembl_gene_id: Amir_1540
symbol: vapC
gene_biotype: protein_coding
description:
  PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.


ensembl_gene_id: Amir_1542
symbol: Amir_1542
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; KEGG: ank:AnaeK_0030 NAD-dependent epimerase/dehydratase.


ensembl_gene_id: Amir_1543
symbol: Amir_1543
gene_biotype: protein_coding
description:
  PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: sfu:Sfum_1404 3-hydroxyacyl-CoA dehydrogenase, NAD-binding.


ensembl_gene_id: Amir_1544
symbol: Amir_1544
gene_biotype: protein_coding
description:
  KEGG: sfu:Sfum_1403 acetyl-CoA acetyltransferases; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Amir_1547
symbol: Amir_1547
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: smt:Smal_2399 transcriptional regulator, MerR family.


ensembl_gene_id: Amir_1548
symbol: Amir_1548
gene_biotype: protein_coding
description:
  PFAM: 3'-5' exonuclease; HRDC domain protein; SMART: 3'-5' exonuclease; HRDC domain protein; KEGG: ade:Adeh_1602 3'-5' exonuclease.


ensembl_gene_id: Amir_1549
symbol: Amir_1549
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: mfa:Mfla_0447 two component LuxR family transcriptional regulator.


ensembl_gene_id: Amir_1552
symbol: hemE
gene_biotype: protein_coding
description:
  Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.


ensembl_gene_id: Amir_1553
symbol: Amir_1553
gene_biotype: protein_coding
description:
  Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.


ensembl_gene_id: Amir_1555
symbol: Amir_1555
gene_biotype: protein_coding
description:
  PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: shn:Shewana3_1740 peptidase S8 and S53, subtilisin, kexin, sedolisin; Belongs to the peptidase S8 family.


ensembl_gene_id: Amir_1559
symbol: Amir_1559
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF692; Xylose isomerase domain protein TIM barrel; KEGG: scl:sce1885 hypothetical protein.


ensembl_gene_id: Amir_1565
symbol: Amir_1565
gene_biotype: protein_coding
description:
  TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: methionine-R-sulfoxide reductase SelR, putative.


ensembl_gene_id: Amir_1568
symbol: Amir_1568
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: pde:Pden_4617 transcriptional regulator, GntR family.


ensembl_gene_id: Amir_1569
symbol: Amir_1569
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: bja:blr3304 acyl-CoA dehydrogenase.


ensembl_gene_id: Amir_1570
symbol: Amir_1570
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: gur:Gura_3313 acyl-CoA dehydrogenase domain- containing protein.


ensembl_gene_id: Amir_1571
symbol: Amir_1571
gene_biotype: protein_coding
description:
  TIGRFAM: DNA polymerase LigD, polymerase domain protein; PFAM: DNA primase small subunit; KEGG: afw:Anae109_2830 DNA primase small subunit.


ensembl_gene_id: Amir_1579
symbol: Amir_1579
gene_biotype: protein_coding
description:
  PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; KEGG: afw:Anae109_4038 ATP-dependent DNA ligase.


ensembl_gene_id: Amir_1580
symbol: Amir_1580
gene_biotype: protein_coding
description:
  PFAM: bifunctional deaminase-reductase domain protein; KEGG: jan:Jann_3421 5-amino-6-(5- phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase.


ensembl_gene_id: Amir_1583
symbol: Amir_1583
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ade:Adeh_0830 ABC transporter, duplicated ATPase subunits.


ensembl_gene_id: Amir_1586
symbol: Amir_1586
gene_biotype: protein_coding
description:
  TIGRFAM: ornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: gbe:GbCGDNIH1_1948 ornithine--oxo-acid transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Amir_1591
symbol: Amir_1591
gene_biotype: protein_coding
description:
  TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: bcz:BCZK4892 LytR family transcriptional regulator.


ensembl_gene_id: Amir_1593
symbol: Amir_1593
gene_biotype: protein_coding
description:
  PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: hypothetical protein.


ensembl_gene_id: Amir_1595
symbol: secA
gene_biotype: protein_coding
description:
  SecA DEAD domain protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.


ensembl_gene_id: Amir_1598
symbol: Amir_1598
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: pfo:Pfl01_4696 acyl-CoA dehydrogenase-like.


ensembl_gene_id: Amir_1602
symbol: Amir_1602
gene_biotype: protein_coding
description:
  PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: scl:sce4229 putative exonuclease.


ensembl_gene_id: Amir_1607
symbol: Amir_1607
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbr:BB0613 putative short chain dehydrogenase.


ensembl_gene_id: Amir_1608
symbol: Amir_1608
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pau:PA14_43180 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Amir_1609
symbol: Amir_1609
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: qor; quinone oxidoreductase protein.


ensembl_gene_id: Amir_1611
symbol: Amir_1611
gene_biotype: protein_coding
description:
  PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: mno:Mnod_8803 peptidase S8 and S53 subtilisin kexin sedolisin; Belongs to the peptidase S8 family.


ensembl_gene_id: Amir_1615
symbol: Amir_1615
gene_biotype: protein_coding
description:
  PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: bha:BH1635 hypothetical protein.


ensembl_gene_id: Amir_1616
symbol: der
gene_biotype: protein_coding
description:
  Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.


ensembl_gene_id: Amir_1617
symbol: Amir_1617
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: scl:sce5431 two-component system response regulator.


ensembl_gene_id: Amir_1618
symbol: Amir_1618
gene_biotype: protein_coding
description:
  PFAM: histidine kinase dimerization and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: scl:sce5432 putative two-component system sensor kinase.


ensembl_gene_id: Amir_1619
symbol: Amir_1619
gene_biotype: protein_coding
description:
  PFAM: integrase family protein; KEGG: scl:sce4427 site-specific recombinase; Belongs to the 'phage' integrase family.


ensembl_gene_id: Amir_1665
symbol: Amir_1665
gene_biotype: protein_coding
description:
  KEGG: alpha-galactosidase, putative / melibiase, putative / alpha-D-galactoside galactohydrolase, putative; K07407 alpha-galactosidase; PFAM: Ricin B lectin; glycoside hydrolase clan GH- D; SMART: Ricin B lectin.


ensembl_gene_id: Amir_1666
symbol: Amir_1666
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: scl:sce8759 hypothetical protein.


ensembl_gene_id: Amir_1670
symbol: Amir_1670
gene_biotype: protein_coding
description:
  KEGG: rso:RSc2037 ABC transporter ATP-binding protein; TIGRFAM: urea ABC transporter, ATP-binding protein UrtE; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Amir_1671
symbol: Amir_1671
gene_biotype: protein_coding
description:
  KEGG: scl:sce5582 putative ABC transporter ATP- binding protein; TIGRFAM: urea ABC transporter, ATP-binding protein UrtD; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Amir_1672
symbol: Amir_1672
gene_biotype: protein_coding
description:
  TIGRFAM: urea ABC transporter, permease protein UrtC; PFAM: inner-membrane translocator; KEGG: scl:sce5581 putative branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Amir_1673
symbol: Amir_1673
gene_biotype: protein_coding
description:
  TIGRFAM: urea ABC transporter, permease protein UrtB; PFAM: inner-membrane translocator; KEGG: scl:sce5580 putative branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Amir_1674
symbol: Amir_1674
gene_biotype: protein_coding
description:
  TIGRFAM: urea ABC transporter, urea binding protein; PFAM: Extracellular ligand-binding receptor; KEGG: scl:sce5579 putative branched-chain amino acid transport system substrate-binding protein.


ensembl_gene_id: Amir_1675
symbol: Amir_1675
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF405; protein of unknown function DUF418; KEGG: bha:BH0583 hypothetical protein.


ensembl_gene_id: Amir_1678
symbol: Amir_1678
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: scl:sce8424 ABC-type dipeptide transport system, periplasmic component.


ensembl_gene_id: Amir_1679
symbol: Amir_1679
gene_biotype: protein_coding
description:
  KEGG: scl:sce4298 ABC-type oligopeptide transport system, ATPase component; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Amir_1680
symbol: Amir_1680
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: scl:sce4301 peptide ABC transporter, permease protein.


ensembl_gene_id: Amir_1681
symbol: Amir_1681
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sit:TM1040_2743 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Amir_1682
symbol: Amir_1682
gene_biotype: protein_coding
description:
  KEGG: scl:sce4299 peptide ABC transporter, ATP- binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Amir_1683
symbol: Amir_1683
gene_biotype: protein_coding
description:
  Beta-galactosidase; KEGG: rfr:Rfer_1102 beta-glucosidase; TIGRFAM: beta-galactosidase; PFAM: glycoside hydrolase family 1.


ensembl_gene_id: Amir_1685
symbol: Amir_1685
gene_biotype: protein_coding
description:
  PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: cti:RALTA_A2171 putative serine/threonine protein phosphatase, P2C family.


ensembl_gene_id: Amir_1690
symbol: ruvB
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.


ensembl_gene_id: Amir_1691
symbol: ruvA
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.


ensembl_gene_id: Amir_1692
symbol: ruvC
gene_biotype: protein_coding
description:
  Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.


ensembl_gene_id: Amir_1693
symbol: Amir_1693
gene_biotype: protein_coding
description:
  KEGG: dvm:DvMF_0211 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein.


ensembl_gene_id: Amir_1694
symbol: Amir_1694
gene_biotype: protein_coding
description:
  TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: mag:amb2515 preprotein translocase subunit YajC.


ensembl_gene_id: Amir_1695
symbol: secD
gene_biotype: protein_coding
description:
  Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: Amir_1696
symbol: secF-2
gene_biotype: protein_coding
description:
  Protein-export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: Amir_1697
symbol: apt
gene_biotype: protein_coding
description:
  Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.


ensembl_gene_id: Amir_1698
symbol: Amir_1698
gene_biotype: protein_coding
description:
  (p)ppGpp synthetase I, SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.


ensembl_gene_id: Amir_1699
symbol: Amir_1699
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase cyclophilin type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.


ensembl_gene_id: Amir_1701
symbol: hisS
gene_biotype: protein_coding
description:
  KEGG: cvi:CV_3537 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein.


ensembl_gene_id: Amir_1713
symbol: Amir_1713
gene_biotype: protein_coding
description:
  PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; protein of unknown function DUF201; biotin/lipoyl attachment domain- containing protein; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: bra:BRADO6875 putative biotin carboxylase.


ensembl_gene_id: Amir_1714
symbol: Amir_1714
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: bxe:Bxe_C0513 putative acyl-CoA dehydrogenase.


ensembl_gene_id: Amir_1717
symbol: Amir_1717
gene_biotype: protein_coding
description:
  PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; proteinase inhibitor I9 subtilisin propeptide; KEGG: mca:MCA0875 serine protease.


ensembl_gene_id: Amir_1718
symbol: Amir_1718
gene_biotype: protein_coding
description:
  PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; proteinase inhibitor I9 subtilisin propeptide; KEGG: swd:Swoo_2373 peptidase S8 and S53 subtilisin kexin sedolisin.


ensembl_gene_id: Amir_1719
symbol: aspS
gene_biotype: protein_coding
description:
  aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.


ensembl_gene_id: Amir_1721
symbol: Amir_1721
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 2; GtrA family protein; KEGG: ppd:Ppro_2693 glycosyl transferase family protein.


ensembl_gene_id: Amir_1723
symbol: Amir_1723
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: sus:Acid_6896 heavy metal sensor signal transduction histidine kinase.


ensembl_gene_id: Amir_1729
symbol: Amir_1729
gene_biotype: protein_coding
description:
  PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: dps:DP2177 hypothetical protein.


ensembl_gene_id: Amir_1730
symbol: Amir_1730
gene_biotype: protein_coding
description:
  KEGG: ank:AnaeK_2858 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.


ensembl_gene_id: Amir_1731
symbol: Amir_1731
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: ret:RHE_CH01364 oxidoreductase protein.


ensembl_gene_id: Amir_1732
symbol: Amir_1732
gene_biotype: protein_coding
description:
  dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.


ensembl_gene_id: Amir_1733
symbol: Amir_1733
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; dTDP-4- dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; KEGG: rlt:Rleg2_6416 NAD-dependent epimerase/dehydratase.


ensembl_gene_id: Amir_1734
symbol: Amir_1734
gene_biotype: protein_coding
description:
  PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: mrd:Mrad2831_4616 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: Amir_1737
symbol: Amir_1737
gene_biotype: protein_coding
description:
  PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: aba:Acid345_1081 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: Amir_1738
symbol: Amir_1738
gene_biotype: protein_coding
description:
  N-acetylglucosamine-1- phosphateuridyltransferase-like protein; KEGG: xcv:XCV3714 bifunctional isomerase / acetyl transferase.


ensembl_gene_id: Amir_1744
symbol: Amir_1744
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: nar:Saro_3542 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Amir_1746
symbol: Amir_1746
gene_biotype: protein_coding
description:
  PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; multi antimicrobial extrusion protein MatE; KEGG: pol:Bpro_1890 polysaccharide biosynthesis protein.


ensembl_gene_id: Amir_1750
symbol: Amir_1750
gene_biotype: protein_coding
description:
  TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; PFAM: NHL repeat containing protein; KEGG: bca:BCE_2353 triple helix repeat-containing COllagen.


ensembl_gene_id: Amir_1751
symbol: Amir_1751
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: rce:RC1_3626 major facilitator superfamily transport protein.


ensembl_gene_id: Amir_1752
symbol: Amir_1752
gene_biotype: protein_coding
description:
  TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: lch:Lcho_2341 WecB/TagA/CpsF family glycosyl transferase; Belongs to the glycosyltransferase 26 family.


ensembl_gene_id: Amir_1754
symbol: Amir_1754
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; protein of unknown function RIO1; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: tbd:Tbd_1700 serine/threonine protein kinase.


ensembl_gene_id: Amir_1758
symbol: Amir_1758
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: YCII-related; regulatory protein LuxR; Sigma- 70 region 4 type 2; SMART: regulatory protein LuxR; KEGG: reu:Reut_B5221 YCII-related.


ensembl_gene_id: Amir_1761
symbol: Amir_1761
gene_biotype: protein_coding
description:
  PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: scl:sce3770 putative phytoene dehydrogenase- related protein.


ensembl_gene_id: Amir_1762
symbol: Amir_1762
gene_biotype: protein_coding
description:
  PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; RNA binding S1 domain protein; KEGG: bja:bll7280 hypothetical protein.


ensembl_gene_id: Amir_1765
symbol: Amir_1765
gene_biotype: protein_coding
description:
  PFAM: Enoyl-CoA hydratase/isomerase; KEGG: nar:Saro_3457 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: Amir_1766
symbol: Amir_1766
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: vei:Veis_4651 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Amir_1774
symbol: Amir_1774
gene_biotype: protein_coding
description:
  TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_2097 ABC transporter permease.


ensembl_gene_id: Amir_1775
symbol: Amir_1775
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: rle:RL0985 putative solute-binding component of ABC transporter.


ensembl_gene_id: Amir_1778
symbol: Amir_1778
gene_biotype: protein_coding
description:
  KEGG: bch:Bcen2424_1675 precorrin-6y C5,15- methyltransferase (decarboxylating), CbiE subunit; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15- methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.


ensembl_gene_id: Amir_1779
symbol: Amir_1779
gene_biotype: protein_coding
description:
  KEGG: bov:BOV_1262 precorrin-4 C11- methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Belongs to the precorrin methyltransferase family.


ensembl_gene_id: Amir_1780
symbol: Amir_1780
gene_biotype: protein_coding
description:
  KEGG: rru:Rru_A2988 precorrin-6A reductase; TIGRFAM: precorrin-6x reductase; PFAM: Precorrin-6x reductase CbiJ/CobK.


ensembl_gene_id: Amir_1781
symbol: Amir_1781
gene_biotype: protein_coding
description:
  TIGRFAM: precorrin-3B C17-methyltransferase; precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: met:M446_2442 precorrin-3B C17- methyltransferase; Belongs to the precorrin methyltransferase family.


ensembl_gene_id: Amir_1784
symbol: Amir_1784
gene_biotype: protein_coding
description:
  Cobaltochelatase, CobN subunit; KEGG: pag:PLES_21191 cobalamin biosynthetic protein CobN; TIGRFAM: cobaltochelatase, CobN subunit; PFAM: CobN/magnesium chelatase.


ensembl_gene_id: Amir_1785
symbol: Amir_1785
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH1924 sugar transport system (sugar- binding protein).


ensembl_gene_id: Amir_1786
symbol: Amir_1786
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1925 sugar transport system (permease).


ensembl_gene_id: Amir_1787
symbol: Amir_1787
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1926 sugar transport system (permease).


ensembl_gene_id: Amir_1788
symbol: Amir_1788
gene_biotype: protein_coding
description:
  Beta-galactosidase; KEGG: hch:HCH_06907 beta-glucosidase/6-phospho-beta- glucosidase/beta-galactosidase; TIGRFAM: beta-galactosidase; PFAM: glycoside hydrolase family 1.


ensembl_gene_id: Amir_1791
symbol: Amir_1791
gene_biotype: protein_coding
description:
  PFAM: cellulose-binding family II; SMART: cellulose-binding family II; KEGG: cja:CJA_2477 endo-1,4-beta- glucanase/xyloglucanase, putative, gly74A.


ensembl_gene_id: Amir_1793
symbol: Amir_1793
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: WD-40 repeat protein; SMART: helix-turn-helix domain protein; WD-40 repeat protein; KEGG: scl:sce5991 protein kinase.


ensembl_gene_id: Amir_1795
symbol: xylA
gene_biotype: protein_coding
description:
  KEGG: aba:Acid345_0903 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family.


ensembl_gene_id: Amir_1802
symbol: Amir_1802
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: transcription activator effector binding; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bsu:BSU05170 hypothetical protein.


ensembl_gene_id: Amir_1803
symbol: Amir_1803
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: mrd:Mrad2831_6253 alcohol dehydrogenase.


ensembl_gene_id: Amir_1805
symbol: Amir_1805
gene_biotype: protein_coding
description:
  PFAM: transcriptional regulator domain protein; KEGG: glo:Glov_0588 two component transcriptional regulator, winged helix family.


ensembl_gene_id: Amir_1807
symbol: Amir_1807
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: atc:AGR_L_1009 putative sugar transport sugar binding protein.


ensembl_gene_id: Amir_1809
symbol: Amir_1809
gene_biotype: protein_coding
description:
  Kojibiose phosphorylase; PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: mex:Mext_0562 kojibiose phosphorylase.


ensembl_gene_id: Amir_1810
symbol: Amir_1810
gene_biotype: protein_coding
description:
  TIGRFAM: beta-phosphoglucomutase family hydrolase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ajs:Ajs_2161 beta-phosphoglucomutase family hydrolase.


ensembl_gene_id: Amir_1811
symbol: Amir_1811
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rsh:Rsph17029_3442 cyclic nucleotide- regulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Amir_1812
symbol: Amir_1812
gene_biotype: protein_coding
description:
  Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: mxa:MXAN_5617 transcriptional regulator, ArsR family.


ensembl_gene_id: Amir_1817
symbol: Amir_1817
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: scl:sce0579 MerR family transcriptional regulator.


ensembl_gene_id: Amir_1819
symbol: Amir_1819
gene_biotype: protein_coding
description:
  Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: pde:Pden_0820 anti-sigma-factor antagonist.


ensembl_gene_id: Amir_1822
symbol: Amir_1822
gene_biotype: protein_coding
description:
  PFAM: chitin-binding domain 3 protein; Fibronectin type III domain protein; cellulose-binding family II; SMART: cellulose-binding family II; Fibronectin type III domain protein; KEGG: pag:PLES_44661 chitin-binding protein CbpD precursor.


ensembl_gene_id: Amir_1824
symbol: Amir_1824
gene_biotype: protein_coding
description:
  Transcriptional regulator, LacI family; KEGG: yen:YE0107 DNA-binding transcriptional regulator CytR; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI.


ensembl_gene_id: Amir_1825
symbol: Amir_1825
gene_biotype: protein_coding
description:
  KEGG: aav:Aave_4199 transcriptional regulator, LacI family; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI.


ensembl_gene_id: Amir_1830
symbol: Amir_1830
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 5; Fibronectin type III domain protein; cellulose-binding family II; SMART: cellulose-binding family II; Fibronectin type III domain protein; KEGG: sde:Sde_0064 putative secreted beta- mannosidase.


ensembl_gene_id: Amir_1831
symbol: Amir_1831
gene_biotype: protein_coding
description:
  PFAM: cellulose-binding family II; lipolytic protein G-D-S-L family; SMART: cellulose-binding family II; KEGG: hypothetical protein.


ensembl_gene_id: Amir_1833
symbol: Amir_1833
gene_biotype: protein_coding
description:
  TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; KEGG: scl:sce5149 ECF subfamily RNA polymerase sigma-70 factor.


ensembl_gene_id: Amir_1839
symbol: Amir_1839
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: Foxred2; FAD-dependent oxidoreductase domain containing 2.


ensembl_gene_id: Amir_1840
symbol: Amir_1840
gene_biotype: protein_coding
description:
  KEGG: pca:Pcar_0512 alkaline phosphatase; PFAM: Alkaline phosphatase; SMART: Alkaline phosphatase; Belongs to the alkaline phosphatase family.


ensembl_gene_id: Amir_1842
symbol: Amir_1842
gene_biotype: protein_coding
description:
  Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: bvi:Bcep1808_3829 LacI family transcription regulator.


ensembl_gene_id: Amir_1843
symbol: Amir_1843
gene_biotype: protein_coding
description:
  PFAM: Pectate lyase/Amb allergen; Pectinesterase; SMART: Pectate lyase/Amb allergen; KEGG: bsu:BSU07560 pectate lyase.


ensembl_gene_id: Amir_1844
symbol: Amir_1844
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_0187 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Amir_1845
symbol: Amir_1845
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2422 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Amir_1846
symbol: Amir_1846
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: rle:pRL110364 putative substrate-binding component of ABC transporter.


ensembl_gene_id: Amir_1847
symbol: Amir_1847
gene_biotype: protein_coding
description:
  PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: ent:Ent638_2707 mandelate racemase/muconate lactonizing protein.


ensembl_gene_id: Amir_1848
symbol: Amir_1848
gene_biotype: protein_coding
description:
  PFAM: Pectate lyase/Amb allergen; SMART: Pectate lyase/Amb allergen; Parallel beta- helix repeat; KEGG: pectate lyase.


ensembl_gene_id: Amir_1849
symbol: Amir_1849
gene_biotype: protein_coding
description:
  PFAM: Ketopantoate reductase ApbA/PanE domain protein; KEGG: gdi:GDI0989 putative 2-dehydropantoate 2- reductase.


ensembl_gene_id: Amir_1850
symbol: Amir_1850
gene_biotype: protein_coding
description:
  PFAM: Ricin B lectin; peptidase alpha-lytic pro domain; peptidase S1 and S6 chymotrypsin/Hap; SMART: Ricin B lectin; KEGG: mxa:MXAN_5466 peptidase, S1E (streptogrisin A) subfamily.


ensembl_gene_id: Amir_1851
symbol: Amir_1851
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dde:Dde_3083 glyoxalase family protein.


ensembl_gene_id: Amir_1852
symbol: Amir_1852
gene_biotype: protein_coding
description:
  Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: aav:Aave_2249 inner membrane ABC transporter permease protein YjfF; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Amir_1853
symbol: Amir_1853
gene_biotype: protein_coding
description:
  Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: scl:sce3306 ribose/xylose/arabinose/galactoside ABC-type transporter permease; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Amir_1855
symbol: Amir_1855
gene_biotype: protein_coding
description:
  PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rpi:Rpic_4095 periplasmic binding protein/LacI transcriptional regulator.


ensembl_gene_id: Amir_1857
symbol: Amir_1857
gene_biotype: protein_coding
description:
  Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; Carbohydrate-binding CenC domain protein; KEGG: ASD1; ASD1 (ALPHA-L-ARABINOFURANOSIDASE); hydrolase, acting on glycosyl bonds.


ensembl_gene_id: Amir_1858
symbol: Amir_1858
gene_biotype: protein_coding
description:
  Alpha-N-arabinofuranosidase; PFAM: glycoside hydrolase family 43; KEGG: hypothetical protein; Belongs to the glycosyl hydrolase 43 family.


ensembl_gene_id: Amir_1859
symbol: Amir_1859
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1680; SMART: LamG domain protein jellyroll fold domain protein; KEGG: hypothetical protein.


ensembl_gene_id: Amir_1860
symbol: Amir_1860
gene_biotype: protein_coding
description:
  Transcriptional regulator, LacI family; KEGG: scl:sce3317 HTH-type transcriptional repressor PurR; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI.


ensembl_gene_id: Amir_1862
symbol: Amir_1862
gene_biotype: protein_coding
description:
  PFAM: class II aldolase/adducin family protein; KEGG: cko:CKO_03636 L-ribulose-5-phosphate 4- epimerase.


ensembl_gene_id: Amir_1865
symbol: Amir_1865
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH3441 L-arabinose ABC transporter ATP- binding protein.


ensembl_gene_id: Amir_1866
symbol: Amir_1866
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: bha:BH3440 L-arabinose ABC transporter (permease); Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Amir_1868
symbol: Amir_1868
gene_biotype: protein_coding
description:
  PFAM: cellulose-binding family II; SMART: cellulose-binding family II; KEGG: cja:CJA_3559 rhamnogalacturonan lyase, rgl11A.


ensembl_gene_id: Amir_1870
symbol: Amir_1870
gene_biotype: protein_coding
description:
  PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rme:Rmet_5441 antibiotic biosynthesis monooxygenase.


ensembl_gene_id: Amir_1872
symbol: Amir_1872
gene_biotype: protein_coding
description:
  PFAM: alpha-L-arabinofuranosidase B; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; KEGG: sus:Acid_6668 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 2 family.


ensembl_gene_id: Amir_1873
symbol: Amir_1873
gene_biotype: protein_coding
description:
  TIGRFAM: alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92; KEGG: sml:Smlt2180 hypothetical protein.


ensembl_gene_id: Amir_1879
symbol: Amir_1879
gene_biotype: protein_coding
description:
  Putative signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: vei:Veis_0031 multi-sensor signal transduction histidine kinase.


ensembl_gene_id: Amir_1881
symbol: Amir_1881
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: azo:azo0569 DNA-binding response regulator.


ensembl_gene_id: Amir_1883
symbol: Amir_1883
gene_biotype: protein_coding
description:
  Ribose-phosphate pyrophosphokinase; KEGG: hch:HCH_00912 phosphoribosylpyrophosphate synthetase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase.


ensembl_gene_id: Amir_1884
symbol: Amir_1884
gene_biotype: protein_coding
description:
  PFAM: zinc finger SWIM domain protein; KEGG: mrd:Mrad2831_1392 zinc finger SWIM domain- containing protein.


ensembl_gene_id: Amir_1885
symbol: Amir_1885
gene_biotype: protein_coding
description:
  PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor type A; KEGG: bur:Bcep18194_B1557 VWA containing CoxE-like protein.


ensembl_gene_id: Amir_1887
symbol: Amir_1887
gene_biotype: protein_coding
description:
  PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: MoxR-like ATPase.


ensembl_gene_id: Amir_1895
symbol: Amir_1895
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: sme:SMc01159 putative oxidoreductase protein.


ensembl_gene_id: Amir_1896
symbol: Amir_1896
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: EPSP synthase (3-phosphoshikimate 1- carboxyvinyltransferase); helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bbt:BBta_0011 UDP-N-acetylglucosamine 1- carboxyvinyltransferase.


ensembl_gene_id: Amir_1905
symbol: Amir_1905
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: sal:Sala_2455 alcohol dehydrogenase GroES- like protein.


ensembl_gene_id: Amir_1907
symbol: Amir_1907
gene_biotype: protein_coding
description:
  PFAM: GAF domain protein; histidine kinase dimerization and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: GAF domain protein; ATP-binding region ATPase domain protein; KEGG: scl:sce2236 putative two-component system sensor kinase.


ensembl_gene_id: Amir_1910
symbol: Amir_1910
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: bcy:Bcer98_0214 two component LuxR family transcriptional regulator.


ensembl_gene_id: Amir_1911
symbol: Amir_1911
gene_biotype: protein_coding
description:
  Putative signal transduction protein with CBS domains; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: pau:PA14_40540 CBS domain-containing protein.


ensembl_gene_id: Amir_1918
symbol: Amir_1918
gene_biotype: protein_coding
description:
  Phosphoketolase; PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: bja:bll2518 putative phosphoketolase.


ensembl_gene_id: Amir_1919
symbol: ackA
gene_biotype: protein_coding
description:
  Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.


ensembl_gene_id: Amir_1920
symbol: Amir_1920
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: scl:sce5315 protein kinase.


ensembl_gene_id: Amir_1927
symbol: Amir_1927
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: sugar ABC transporter; K10188 lactose/L- arabinose transport system substrate-binding protein.


ensembl_gene_id: Amir_1928
symbol: Amir_1928
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sugar ABC transporter; K10189 lactose/L- arabinose transport system permease protein.


ensembl_gene_id: Amir_1929
symbol: Amir_1929
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sml:Smlt3250 putative sugar transporter, permease protein.


ensembl_gene_id: Amir_1930
symbol: Amir_1930
gene_biotype: protein_coding
description:
  Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: vei:Veis_3457 alpha-N-arabinofuranosidase.


ensembl_gene_id: Amir_1931
symbol: Amir_1931
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; dTDP-4-dehydrorhamnose reductase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: glo:Glov_0487 NAD-dependent epimerase/dehydratase.


ensembl_gene_id: Amir_1933
symbol: Amir_1933
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bcb:BCB4264_A5589 DNA-binding response regulator YycF.


ensembl_gene_id: Amir_1937
symbol: Amir_1937
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; Bacterio-opsin activator HTH domain protein; SMART: response regulator receiver; regulatory protein LuxR; KEGG: xcv:XCV4086 LuxR family two-component response regulator.


ensembl_gene_id: Amir_1938
symbol: Amir_1938
gene_biotype: protein_coding
description:
  PFAM: histidine kinase dimerization and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: ccs:CCNA_01207 two-component sensor histidine kinase.


ensembl_gene_id: Amir_1940
symbol: Amir_1940
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ccs:CCNA_01205 ABC transporter ATP-binding protein.


ensembl_gene_id: Amir_1944
symbol: Amir_1944
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: cko:CKO_01491 hypothetical protein.


ensembl_gene_id: Amir_1946
symbol: Amir_1946
gene_biotype: protein_coding
description:
  Spermidine synthase-like protein; KEGG: bpt:Bpet3209 spermidine synthase (putrescine aminopropyltransferase).


ensembl_gene_id: Amir_1948
symbol: Amir_1948
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; KEGG: bac:BamMC406_1610 ABC transporter related.


ensembl_gene_id: Amir_1949
symbol: Amir_1949
gene_biotype: protein_coding
description:
  Molybdate ABC transporter, inner membrane subunit; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: Amir_1950
symbol: Amir_1950
gene_biotype: protein_coding
description:
  TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: scl:sce1135 ABC-type molybdate transporter, substrate-binding protein.


ensembl_gene_id: Amir_1951
symbol: Amir_1951
gene_biotype: protein_coding
description:
  TIGRFAM: DNA binding domain protein, excisionase family; PFAM: TOBE domain protein; regulatory protein MerR; KEGG: aba:Acid345_1548 molybdenum-pterin binding protein.


ensembl_gene_id: Amir_1952
symbol: Amir_1952
gene_biotype: protein_coding
description:
  PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: pst:PSPTO_2646 TetR family transcriptional regulator.


ensembl_gene_id: Amir_1955
symbol: Amir_1955
gene_biotype: protein_coding
description:
  PFAM: Osmosensitive K channel His kinase sensor; ATP-binding region ATPase domain protein; UspA domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mrd:Mrad2831_0205 osmosensitive K+ channel signal transduction histidine kinase.


ensembl_gene_id: Amir_1957
symbol: Amir_1957
gene_biotype: protein_coding
description:
  PFAM: PAS fold-3 domain protein; chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; PAC repeat- containing protein; KEGG: psp:PSPPH_4230 methyl-accepting chemotaxis protein.


ensembl_gene_id: Amir_1962
symbol: cobB
gene_biotype: protein_coding
description:
  Silent information regulator protein Sir2; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.


ensembl_gene_id: Amir_1966
symbol: Amir_1966
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bra:BRADO0101 organic hydroperoxide resistance transcriptional regulator.


ensembl_gene_id: Amir_1970
symbol: Amir_1970
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: acp:A2cp1_3940 TPR repeat-containing protein.


ensembl_gene_id: Amir_1971
symbol: Amir_1971
gene_biotype: protein_coding
description:
  PFAM: alpha-L-arabinofuranosidase B; Glycosyl hydrolase family 32 domain protein; KEGG: scl:sce1247 hypothetical protein.


ensembl_gene_id: Amir_1975
symbol: Amir_1975
gene_biotype: protein_coding
description:
  Alpha-glucuronidase; PFAM: Glycosyl hydrolase 67 middle domain protein; glycosyl hydrolase 67 C-teriminal domain protein; KEGG: bha:BH1061 alpha-glucuronidase.


ensembl_gene_id: Amir_1979
symbol: Amir_1979
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: atc:AGR_L_3560 AlgQ1, putative multiple sugar transport system substrate-binding protein.


ensembl_gene_id: Amir_1980
symbol: Amir_1980
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bsu:BSU07120 transmembrane lipoprotein.


ensembl_gene_id: Amir_1981
symbol: Amir_1981
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_3564 AlgM1, putative multiple sugar transport system permease protein.


ensembl_gene_id: Amir_1982
symbol: Amir_1982
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 3 domain protein; KEGG: vei:Veis_0942 glycoside hydrolase, family 3 domain protein.


ensembl_gene_id: Amir_1983
symbol: Amir_1983
gene_biotype: protein_coding
description:
  KEGG: rpi:Rpic_0879 transcriptional regulator, LacI family; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI.


ensembl_gene_id: Amir_1990
symbol: Amir_1990
gene_biotype: protein_coding
description:
  PFAM: aminoglycoside phosphotransferase; KEGG: sme:SMc02722 putative aminoglycoside 3'- phosphotransferase protein.


ensembl_gene_id: Amir_1996
symbol: Amir_1996
gene_biotype: protein_coding
description:
  PFAM: aminotransferase class-III; KEGG: sat:SYN_01215 4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Amir_1997
symbol: Amir_1997
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 20; KEGG: ank:AnaeK_0483 HAD-superfamily hydrolase, subfamily IIB.


ensembl_gene_id: Amir_1998
symbol: Amir_1998
gene_biotype: protein_coding
description:
  PFAM: dTDP-4-dehydrorhamnose reductase; NAD- dependent epimerase/dehydratase; KEGG: acp:A2cp1_4446 dTDP-4-dehydrorhamnose reductase.


ensembl_gene_id: Amir_2000
symbol: Amir_2000
gene_biotype: protein_coding
description:
  3-dehydroquinate synthase; Catalyzes the conversion of sedoheptulose 7-phosphate to 2- epi-valiolone, which may serve as an alternative precursor for aminocyclitol biosynthesis.


ensembl_gene_id: Amir_2001
symbol: Amir_2001
gene_biotype: protein_coding
description:
  PFAM: Xylose isomerase domain protein TIM barrel; ATPase BadF/BadG/BcrA/BcrD type; KEGG: vei:Veis_3268 xylose isomerase domain protein TIM barrel.


ensembl_gene_id: Amir_2003
symbol: Amir_2003
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3- methyltransferase; KEGG: lch:Lcho_1958 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Amir_2005
symbol: Amir_2005
gene_biotype: protein_coding
description:
  KEGG: rce:RC1_2688 malate synthase A; TIGRFAM: malate synthase A; PFAM: malate synthase; Belongs to the malate synthase family.


ensembl_gene_id: Amir_2006
symbol: Amir_2006
gene_biotype: protein_coding
description:
  TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: sml:Smlt0232 putative isocitrate lyase.


ensembl_gene_id: Amir_2007
symbol: Amir_2007
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: protein of unknown function DUF955; helix- turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: rpt:Rpal_2644 transcriptional regulator, XRE family.


ensembl_gene_id: Amir_2016
symbol: Amir_2016
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: rpi:Rpic_2575 RNA polymerase, sigma-24 subunit, ECF subfamily.


ensembl_gene_id: Amir_2021
symbol: Amir_2021
gene_biotype: protein_coding
description:
  Scyllo-inosamine-4-phosphate amidinotransferase; KEGG: bid:Bind_1964 non-specific serine/threonine protein kinase.


ensembl_gene_id: Amir_2022
symbol: Amir_2022
gene_biotype: protein_coding
description:
  Diaminobutyrate/2-oxoglutarate aminotransferase; Catalyzes reversively the conversion of L-aspartate beta- semialdehyde (ASA) to L-2,4-diaminobutyrate (DABA) by transamination with L-glutamate; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Amir_2025
symbol: kynU-2
gene_biotype: protein_coding
description:
  Aminotransferase class V; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.


ensembl_gene_id: Amir_2026
symbol: Amir_2026
gene_biotype: protein_coding
description:
  PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; KEGG: bpd:BURPS668_0791 biotin carboxylase.


ensembl_gene_id: Amir_2027
symbol: Amir_2027
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; KEGG: rpc:RPC_4715 major facilitator transporter.


ensembl_gene_id: Amir_2028
symbol: Amir_2028
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: bmb:BruAb2_0285 amino acid ABC transporter, periplasmic amino acid-binding protein.


ensembl_gene_id: Amir_2036
symbol: Amir_2036
gene_biotype: protein_coding
description:
  PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: mex:Mext_0724 monooxygenase FAD-binding.


ensembl_gene_id: Amir_2037
symbol: Amir_2037
gene_biotype: protein_coding
description:
  KEGG: bcb:BCB4264_A2138 respiratory nitrate reductase, gamma subunit; TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase gamma subunit.


ensembl_gene_id: Amir_2038
symbol: Amir_2038
gene_biotype: protein_coding
description:
  TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase delta subunit; KEGG: bsu:BSU37260 nitrate reductase (protein J).


ensembl_gene_id: Amir_2040
symbol: Amir_2040
gene_biotype: protein_coding
description:
  KEGG: bcb:BCB4264_A2135 respiratory nitrate reductase, alpha subunit; TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: Amir_2046
symbol: argG
gene_biotype: protein_coding
description:
  KEGG: lch:Lcho_0912 argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; PFAM: argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 2 subfamily.


ensembl_gene_id: Amir_2048
symbol: Amir_2048
gene_biotype: protein_coding
description:
  PFAM: cellulose-binding family II; Fibronectin type III domain protein; SMART: cellulose-binding family II; Fibronectin type III domain protein; KEGG: cak:Caul_2415 alpha-N-arabinofuranosidase.


ensembl_gene_id: Amir_2049
symbol: Amir_2049
gene_biotype: protein_coding
description:
  PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: pst:PSPTO_4577 glycine betaine/choline OpuC ABC transporter, periplasmic substrate-binding protein.


ensembl_gene_id: Amir_2050
symbol: Amir_2050
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bsu:BSU33720 choline ABC transporter membrane protein.


ensembl_gene_id: Amir_2051
symbol: Amir_2051
gene_biotype: protein_coding
description:
  KEGG: pol:Bpro_1154 glycine betaine/L-proline transport ATP binding subunit; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Amir_2052
symbol: Amir_2052
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMa1467 inner-membrane permease.


ensembl_gene_id: Amir_2055
symbol: Amir_2055
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: acr:Acry_0983 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Amir_2056
symbol: Amir_2056
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cvi:CV_1679 ABC transporter permease.


ensembl_gene_id: Amir_2057
symbol: Amir_2057
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: acr:Acry_0981 ABC transporter related; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Amir_2062
symbol: Amir_2062
gene_biotype: protein_coding
description:
  TIGRFAM: hydroxyisourate hydrolase; PFAM: Transthyretin; KEGG: hypothetical protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.


ensembl_gene_id: Amir_2063
symbol: Amir_2063
gene_biotype: protein_coding
description:
  Transcriptional regulator, PucR family; PFAM: purine catabolism PurC domain protein; KEGG: GK24882 gene product from transcript GK24882- RA.


ensembl_gene_id: Amir_2066
symbol: Amir_2066
gene_biotype: protein_coding
description:
  PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: lch:Lcho_0275 histidine kinase.


ensembl_gene_id: Amir_2069
symbol: Amir_2069
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function ATP binding; KEGG: dac:Daci_0776 protein of unknown function ATP binding.


ensembl_gene_id: Amir_2070
symbol: Amir_2070
gene_biotype: protein_coding
description:
  PFAM: flavin-containing monooxygenase FMO; FAD- dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pla:Plav_0443 flavin-containing monooxygenase.


ensembl_gene_id: Amir_2073
symbol: Amir_2073
gene_biotype: protein_coding
description:
  PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: gbm:Gbem_1461 3-hydroxyacyl-CoA dehydrogenase NAD-binding.


ensembl_gene_id: Amir_2075
symbol: Amir_2075
gene_biotype: protein_coding
description:
  TIGRFAM: ethanolamine transproter; PFAM: amino acid permease-associated region; KEGG: ppg:PputGB1_0589 ethanolamine transproter.


ensembl_gene_id: Amir_2076
symbol: Amir_2076
gene_biotype: protein_coding
description:
  Glutamate--ammonia ligase; PFAM: glutamine synthetase catalytic region; KEGG: acr:Acry_2393 glutamine synthetase, catalytic region.


ensembl_gene_id: Amir_2077
symbol: Amir_2077
gene_biotype: protein_coding
description:
  PFAM: peptidase C26; glutamine amidotransferase class-I; KEGG: rru:Rru_A0651 glutamine amidotransferase class-I.


ensembl_gene_id: Amir_2079
symbol: Amir_2079
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: hypothetical protein.


ensembl_gene_id: Amir_2080
symbol: Amir_2080
gene_biotype: protein_coding
description:
  PFAM: GntR domain protein; regulatory protein GntR HTH; Helix-turn-helix type 11 domain protein; SMART: regulatory protein GntR HTH; KEGG: swi:Swit_1674 GntR family transcriptional regulator.


ensembl_gene_id: Amir_2085
symbol: Amir_2085
gene_biotype: protein_coding
description:
  KEGG: acp:A2cp1_4055 daunorubicin resistance ABC transporter ATPase subunit; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Amir_2086
symbol: Amir_2086
gene_biotype: protein_coding
description:
  PFAM: ABC-2 type transporter; KEGG: bcz:BCZK3149 ABC transporter efflux permease; daunorubicin resistance transmembrane protein.


ensembl_gene_id: Amir_2089
symbol: thrS
gene_biotype: protein_coding
description:
  TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; KEGG: afr:AFE_2614 threonyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: Amir_2090
symbol: Amir_2090
gene_biotype: protein_coding
description:
  PFAM: histidine triad (HIT) protein; KEGG: pca:Pcar_1504 HIT (HINT, histidine triad) family protein.


ensembl_gene_id: Amir_2092
symbol: Amir_2092
gene_biotype: protein_coding
description:
  PFAM: CDP-alcohol phosphatidyltransferase; KEGG: noc:Noc_2982 CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: Amir_2094
symbol: Amir_2094
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase group 1; KEGG: acp:A2cp1_4300 phosphatidylinositol alpha- mannosyltransferase.


ensembl_gene_id: Amir_2099
symbol: Amir_2099
gene_biotype: protein_coding
description:
  Dihydropyrimidinase; KEGG: sus:Acid_7659 dihydropyrimidinase; TIGRFAM: dihydropyrimidinase; PFAM: amidohydrolase; Amidohydrolase 3.


ensembl_gene_id: Amir_2100
symbol: Amir_2100
gene_biotype: protein_coding
description:
  PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sus:Acid_7663 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.


ensembl_gene_id: Amir_2101
symbol: Amir_2101
gene_biotype: protein_coding
description:
  TIGRFAM: NCS1 nucleoside transporter family; PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: sus:Acid_7658 NCS1 nucleoside transporter.


ensembl_gene_id: Amir_2103
symbol: Amir_2103
gene_biotype: protein_coding
description:
  Transcriptional regulator, PucR family; PFAM: purine catabolism PurC domain protein; KEGG: pag:PLES_34081 putative regulatory protein.


ensembl_gene_id: Amir_2104
symbol: Amir_2104
gene_biotype: protein_coding
description:
  PFAM: aminotransferase class-III; KEGG: sus:Acid_7662 aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Amir_2105
symbol: Amir_2105
gene_biotype: protein_coding
description:
  TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: sus:Acid_0680 methylmalonate-semialdehyde dehydrogenase [acylating].


ensembl_gene_id: Amir_2107
symbol: Amir_2107
gene_biotype: protein_coding
description:
  TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain IV; protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: mpt:Mpe_A3402 elongation factor G.


ensembl_gene_id: Amir_2108
symbol: pdxS
gene_biotype: protein_coding
description:
  Pyridoxine biosynthesis protein; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family.


ensembl_gene_id: Amir_2109
symbol: pdxT
gene_biotype: protein_coding
description:
  SNO glutamine amidotransferase; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS.


ensembl_gene_id: Amir_2122
symbol: egtA
gene_biotype: protein_coding
description:
  Glutamate--cysteine ligase GCS2; Catalyzes the synthesis of gamma-glutamylcysteine (gamma-GC). This compound is used as substrate for the biosynthesis of the low- molecular thiol compound ergothioneine.


ensembl_gene_id: Amir_2123
symbol: egtB
gene_biotype: protein_coding
description:
  Protein of unknown function DUF323; Catalyzes the oxidative sulfurization of hercynine (N- alpha,N-alpha,N-alpha-trimethyl-L-histidine) into hercynyl-gamma-L- glutamyl-L-cysteine sulfoxide, a step in the biosynthesis pathway of ergothioneine; Belongs to the EgtB family.


ensembl_gene_id: Amir_2124
symbol: egtC
gene_biotype: protein_coding
description:
  Glutamine amidotransferase-like protein; Catalyzes the hydrolysis of the gamma-glutamyl amide bond of hercynyl-gamma-L-glutamyl-L-cysteine sulfoxide to produce hercynylcysteine sulfoxide, a step in the biosynthesis pathway of ergothioneine.


ensembl_gene_id: Amir_2125
symbol: egtD
gene_biotype: protein_coding
description:
  Methyltransferase; Catalyzes the SAM-dependent triple methylation of the alpha- amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine; Belongs to the methyltransferase superfamily. EgtD family.


ensembl_gene_id: Amir_2132
symbol: Amir_2132
gene_biotype: protein_coding
description:
  TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein; KEGG: eba:ebA6773 aconitate hydratase.


ensembl_gene_id: Amir_2133
symbol: Amir_2133
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bat:BAS4648 ABC transporter, ATP-binding protein, putative.


ensembl_gene_id: Amir_2141
symbol: Amir_2141
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: mmr:Mmar10_0581 ECF subfamily RNA polymerase sigma-24 factor.


ensembl_gene_id: Amir_2145
symbol: Amir_2145
gene_biotype: protein_coding
description:
  PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: reh:H16_B1613 MoxR-like ATPase.


ensembl_gene_id: Amir_2147
symbol: Amir_2147
gene_biotype: protein_coding
description:
  PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: azo:azo2864 hypothetical protein.


ensembl_gene_id: Amir_2149
symbol: Amir_2149
gene_biotype: protein_coding
description:
  TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: psa:PST_4124 periplasmic binding protein, putative.


ensembl_gene_id: Amir_2150
symbol: Amir_2150
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: scl:sce7107 sensor histidine kinase.


ensembl_gene_id: Amir_2151
symbol: Amir_2151
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: afw:Anae109_0880 two component transcriptional regulator.


ensembl_gene_id: Amir_2152
symbol: Amir_2152
gene_biotype: protein_coding
description:
  PFAM: ANTAR domain protein; GAF domain protein; SMART: GAF domain protein; KEGG: sus:Acid_4463 putative GAF sensor protein.


ensembl_gene_id: Amir_2153
symbol: Amir_2153
gene_biotype: protein_coding
description:
  Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.


ensembl_gene_id: Amir_2157
symbol: Amir_2157
gene_biotype: protein_coding
description:
  TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: bph:Bphy_2768 hypothetical protein.


ensembl_gene_id: Amir_2158
symbol: Amir_2158
gene_biotype: protein_coding
description:
  TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sfu:Sfum_0474 mammalian cell entry related domain protein.


ensembl_gene_id: Amir_2159
symbol: Amir_2159
gene_biotype: protein_coding
description:
  TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: gme:Gmet_1272 virulence factor MCE-like protein-related protein.


ensembl_gene_id: Amir_2160
symbol: Amir_2160
gene_biotype: protein_coding
description:
  TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sat:SYN_00409 ABC-type transport system involved in resistance to organic solvents, periplasmic component.


ensembl_gene_id: Amir_2166
symbol: Amir_2166
gene_biotype: protein_coding
description:
  Cellulase; KEGG: mxa:MXAN_4837 endoglucanase; PFAM: glycoside hydrolase family 6; cellulose- binding family II; SMART: cellulose-binding family II; Belongs to the glycosyl hydrolase family 6.


ensembl_gene_id: Amir_2167
symbol: Amir_2167
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 48; cellulose- binding family II; SMART: cellulose-binding family II; KEGG: hch:HCH_02465 RTX toxins and related Ca2+- binding protein.


ensembl_gene_id: Amir_2168
symbol: Amir_2168
gene_biotype: protein_coding
description:
  Beta-glucosidase; PFAM: glycoside hydrolase family 3 domain protein; KEGG: bha:BH1908 glucan 1,4-beta-glucosidase.


ensembl_gene_id: Amir_2169
symbol: Amir_2169
gene_biotype: protein_coding
description:
  Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: bam:Bamb_4929 LacI family transcription regulator.


ensembl_gene_id: Amir_2171
symbol: Amir_2171
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0484 transmembrane lipoprotein.


ensembl_gene_id: Amir_2172
symbol: Amir_2172
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bsu:BSU30170 hypothetical protein.


ensembl_gene_id: Amir_2175
symbol: Amir_2175
gene_biotype: protein_coding
description:
  PFAM: CutA1 divalent ion tolerance protein; KEGG: bbr:BB0060 putative periplasmic divalent cation tolerance protein.


ensembl_gene_id: Amir_2176
symbol: Amir_2176
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: gur:Gura_3524 MerR family transcriptional regulator.


ensembl_gene_id: Amir_2179
symbol: Amir_2179
gene_biotype: protein_coding
description:
  PFAM: FAD linked oxidase domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: ade:Adeh_0810 hypothetical protein.


ensembl_gene_id: Amir_2180
symbol: Amir_2180
gene_biotype: protein_coding
description:
  TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: prw:PsycPRwf_0457 3-oxoacyl-(acyl-carrier- protein) reductase.


ensembl_gene_id: Amir_2181
symbol: Amir_2181
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mxa:MXAN_6034 enoyl-(acyl carrier protein) reductase.


ensembl_gene_id: Amir_2182
symbol: hemH
gene_biotype: protein_coding
description:
  Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.


ensembl_gene_id: Amir_2185
symbol: Amir_2185
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: hne:HNE_0018 short chain dehydrogenase/reductase family oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Amir_2191
symbol: Amir_2191
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 6; cellulose- binding family II; SMART: cellulose-binding family II; KEGG: sde:Sde_2272 cellobiohydrolase A (1 4-beta- cellobiosidase A)-like; Belongs to the glycosyl hydrolase family 6.


ensembl_gene_id: Amir_2194
symbol: Amir_2194
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: GA27442 gene product from transcript GA27442- RA.


ensembl_gene_id: Amir_2201
symbol: mshC
gene_biotype: protein_coding
description:
  cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha- D-glucopyranoside ligase; Catalyzes the ATP-dependent condensation of GlcN-Ins and L- cysteine to form L-Cys-GlcN-Ins; Belongs to the class-I aminoacyl-tRNA synthetase family. MshC subfamily.


ensembl_gene_id: Amir_2202
symbol: Amir_2202
gene_biotype: protein_coding
description:
  PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Proprotein convertase P; Ig family protein; proteinase inhibitor I9 subtilisin propeptide; KEGG: mca:MCA0875 serine protease.


ensembl_gene_id: Amir_2206
symbol: Amir_2206
gene_biotype: protein_coding
description:
  TIGRFAM: peptidase S26B, signal peptidase; PFAM: peptidase S24 and S26 domain protein; KEGG: similar to trefoil factor.


ensembl_gene_id: Amir_2207
symbol: Amir_2207
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: dvm:DvMF_0882 two component transcriptional regulator, winged helix family.


ensembl_gene_id: Amir_2208
symbol: Amir_2208
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: aba:Acid345_3504 response regulator receiver protein.


ensembl_gene_id: Amir_2209
symbol: Amir_2209
gene_biotype: protein_coding
description:
  PFAM: ATP-binding region ATPase domain protein; GAF domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; KEGG: amc:MADE_03205 histidine kinase response regulator hybrid protein.


ensembl_gene_id: Amir_2211
symbol: Amir_2211
gene_biotype: protein_coding
description:
  Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.


ensembl_gene_id: Amir_2212
symbol: Amir_2212
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: smt:Smal_0452 HAD-superfamily hydrolase, subfamily IA, variant 3.


ensembl_gene_id: Amir_2216
symbol: Amir_2216
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: pau:PA14_08440 putative short chain alcohol dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Amir_2218
symbol: hisE
gene_biotype: protein_coding
description:
  TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-ATP pyrophosphohydrolase; KEGG: xfn:XfasM23_1346 phosphoribosyl-ATP diphosphatase.


ensembl_gene_id: Amir_2225
symbol: Amir_2225
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: scl:sce5431 two-component system response regulator.


ensembl_gene_id: Amir_2228
symbol: Amir_2228
gene_biotype: protein_coding
description:
  tRNA methyltransferase complex GCD14 subunit; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA.


ensembl_gene_id: Amir_2231
symbol: arc
gene_biotype: protein_coding
description:
  AAA ATPase central domain protein; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis.


ensembl_gene_id: Amir_2239
symbol: Amir_2239
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF245 domain protein; protein of unknown function DUF275 domain protein.


ensembl_gene_id: Amir_2240
symbol: pup
gene_biotype: protein_coding
description:
  Protein of unknown function DUF797; Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation. Belongs to the prokaryotic ubiquitin-like protein family.


ensembl_gene_id: Amir_2241
symbol: prcB
gene_biotype: protein_coding
description:
  20S proteasome A and B subunits; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1B family.


ensembl_gene_id: Amir_2242
symbol: prcA
gene_biotype: protein_coding
description:
  20S proteasome A and B subunits; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1A family.


ensembl_gene_id: Amir_2243
symbol: Amir_2243
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bja:blr4790 putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Amir_2245
symbol: Amir_2245
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; AAA ATPase; KEGG: afw:Anae109_3347 transcriptional activator domain-containing protein.


ensembl_gene_id: Amir_2246
symbol: Amir_2246
gene_biotype: protein_coding
description:
  PFAM: phosphoesterase PA-phosphatase related; diacylglycerol kinase catalytic region; SMART: phosphoesterase PA-phosphatase related; diacylglycerol kinase catalytic region; KEGG: scl:sce9292 hypothetical protein.


ensembl_gene_id: Amir_2247
symbol: pafA
gene_biotype: protein_coding
description:
  Protein of unknown function DUF245 domain protein; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side- chain amino group of a substrate lysine.


ensembl_gene_id: Amir_2248
symbol: Amir_2248
gene_biotype: protein_coding
description:
  PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: afw:Anae109_0483 activator of HSP90 ATPase 1 family protein.


ensembl_gene_id: Amir_2251
symbol: tatA
gene_biotype: protein_coding
description:
  Twin-arginine translocation protein, TatA/E family subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.


ensembl_gene_id: Amir_2252
symbol: tatC
gene_biotype: protein_coding
description:
  Sec-independent protein translocase, TatC subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.


ensembl_gene_id: Amir_2253
symbol: Amir_2253
gene_biotype: protein_coding
description:
  PFAM: diacylglycerol kinase catalytic region; SMART: diacylglycerol kinase catalytic region; KEGG: mxa:MXAN_6724 putative lipid kinase.


ensembl_gene_id: Amir_2254
symbol: Amir_2254
gene_biotype: protein_coding
description:
  PFAM: DEAD/DEAH box helicase domain protein; DSH domain protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase; helicase domain protein; KEGG: predicted protein.


ensembl_gene_id: Amir_2257
symbol: Amir_2257
gene_biotype: protein_coding
description:
  PFAM: 5'-3' exonuclease; SMART: 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2; KEGG: rce:RC1_2483 DNA polymerase I, putative.


ensembl_gene_id: Amir_2258
symbol: Amir_2258
gene_biotype: protein_coding
description:
  PFAM: peptidase M24; creatinase; KEGG: xca:xccb100_1756 putative proline dipeptidase; Belongs to the peptidase M24B family.


ensembl_gene_id: Amir_2259
symbol: Amir_2259
gene_biotype: protein_coding
description:
  PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: scl:sce5626 leucine responsive regulatory protein.


ensembl_gene_id: Amir_2262
symbol: Amir_2262
gene_biotype: protein_coding
description:
  Diguanylate cyclase; KEGG: cvi:CV_1143 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein.


ensembl_gene_id: Amir_2267
symbol: Amir_2267
gene_biotype: protein_coding
description:
  PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: scl:sce0700 ATP-independent RNA helicase; Belongs to the DEAD box helicase family.


ensembl_gene_id: Amir_2269
symbol: Amir_2269
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF6 transmembrane; KEGG: gbm:Gbem_3934 protein of unknown function DUF6 transmembrane.


ensembl_gene_id: Amir_2271
symbol: Amir_2271
gene_biotype: protein_coding
description:
  PFAM: YceI family protein; KEGG: afw:Anae109_3638 YceI family protein; Belongs to the UPF0312 family.


ensembl_gene_id: Amir_2272
symbol: Amir_2272
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: rpa:RPA0821 MarR family transcriptional regulator.


ensembl_gene_id: Amir_2273
symbol: Amir_2273
gene_biotype: protein_coding
description:
  PFAM: ATPase associated with various cellular activities AAA_3; magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; KEGG: gur:Gura_0187 ATPase.


ensembl_gene_id: Amir_2277
symbol: icmF
gene_biotype: protein_coding
description:
  methylmalonyl-CoA mutase, large subunit; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.


ensembl_gene_id: Amir_2278
symbol: Amir_2278
gene_biotype: protein_coding
description:
  PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: bid:Bind_3201 TPR repeat-containing protein.


ensembl_gene_id: Amir_2280
symbol: Amir_2280
gene_biotype: protein_coding
description:
  PFAM: DNA gyrase subunit B domain protein; TOPRIM domain protein; ATP-binding region ATPase domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; KEGG: bsu:BSU00060 DNA gyrase subunit B.


ensembl_gene_id: Amir_2281
symbol: Amir_2281
gene_biotype: protein_coding
description:
  DNA topoisomerase (ATP-hydrolyzing); KEGG: bcz:BCZK0006 DNA gyrase subunit A; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; SMART: DNA gyrase/topoisomerase IV subunit A; Hedgehog/intein hint domain protein.


ensembl_gene_id: Amir_2286
symbol: hisG
gene_biotype: protein_coding
description:
  ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Long subfamily.


ensembl_gene_id: Amir_2287
symbol: Amir_2287
gene_biotype: protein_coding
description:
  KEGG: msl:Msil_2593 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: GGDEF domain containing protein; EAL domain protein.


ensembl_gene_id: Amir_2291
symbol: Amir_2291
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcy:Bcer98_2114 ABC transporter-related protein.


ensembl_gene_id: Amir_2296
symbol: Amir_2296
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bur:Bcep18194_A5869 hypothetical protein.


ensembl_gene_id: Amir_2300
symbol: Amir_2300
gene_biotype: protein_coding
description:
  PFAM: Xylose isomerase domain protein TIM barrel; AP endonuclease 2 domain protein; KEGG: vei:Veis_3268 xylose isomerase domain protein TIM barrel.


ensembl_gene_id: Amir_2301
symbol: Amir_2301
gene_biotype: protein_coding
description:
  PFAM: FAD linked oxidase domain protein; D- arabinono-14-lactone oxidase; KEGG: hypothetical protein.


ensembl_gene_id: Amir_2302
symbol: Amir_2302
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: swi:Swit_4414 protein of unknown function DUF894, DitE.


ensembl_gene_id: Amir_2306
symbol: Amir_2306
gene_biotype: protein_coding
description:
  Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rpe:RPE_3910 anti-sigma-factor antagonist.


ensembl_gene_id: Amir_2307
symbol: Amir_2307
gene_biotype: protein_coding
description:
  TIGRFAM: methylase; PFAM: methyltransferase small; KEGG: acp:A2cp1_0395 modification methylase, HemK family.


ensembl_gene_id: Amir_2310
symbol: Amir_2310
gene_biotype: protein_coding
description:
  Glutamate--cysteine ligase GCS2; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.


ensembl_gene_id: Amir_2312
symbol: Amir_2312
gene_biotype: protein_coding
description:
  KEGG: mxa:MXAN_2785 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.


ensembl_gene_id: Amir_2315
symbol: Amir_2315
gene_biotype: protein_coding
description:
  TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: bha:BH2438 flagellar biosynthesis protein FlhA.


ensembl_gene_id: Amir_2317
symbol: Amir_2317
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dds:Ddes_0324 response regulator receiver protein.


ensembl_gene_id: Amir_2319
symbol: Amir_2319
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: aba:Acid345_1527 response regulator receiver protein, CheY.


ensembl_gene_id: Amir_2320
symbol: Amir_2320
gene_biotype: protein_coding
description:
  KEGG: aba:Acid345_1529 MCP methyltransferase, CheR- type; PFAM: MCP methyltransferase CheR-type; Methyltransferase type 12; SMART: MCP methyltransferase CheR-type.


ensembl_gene_id: Amir_2321
symbol: cheB
gene_biotype: protein_coding
description:
  Response regulator receiver modulated CheB methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.


ensembl_gene_id: Amir_2323
symbol: Amir_2323
gene_biotype: protein_coding
description:
  PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: aba:Acid345_1526 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: Amir_2325
symbol: Amir_2325
gene_biotype: protein_coding
description:
  PFAM: CheW domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; ATP- binding region ATPase domain protein; SMART: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: aba:Acid345_1524 CheA signal transduction histidine kinases.


ensembl_gene_id: Amir_2328
symbol: Amir_2328
gene_biotype: protein_coding
description:
  PFAM: type III secretion exporter; KEGG: cti:RALTA_B0268 FlhB: flagellar biosynthetic protein. FlhB/HrpN/YscU/SpaS family.


ensembl_gene_id: Amir_2329
symbol: Amir_2329
gene_biotype: protein_coding
description:
  PFAM: type III secretion system inner membrane R protein; KEGG: tbd:Tbd_1612 flagellar biosynthesis protein FliR.


ensembl_gene_id: Amir_2331
symbol: fliP
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.


ensembl_gene_id: Amir_2333
symbol: Amir_2333
gene_biotype: protein_coding
description:
  TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: bvi:Bcep1808_0049 flagellar motor switch protein FliN.


ensembl_gene_id: Amir_2334
symbol: Amir_2334
gene_biotype: protein_coding
description:
  PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein; KEGG: hhe:HH1147 flagellar motor switch protein FliM.


ensembl_gene_id: Amir_2335
symbol: Amir_2335
gene_biotype: protein_coding
description:
  Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.


ensembl_gene_id: Amir_2339
symbol: Amir_2339
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: bha:BH2449 flagellar basal body rod protein FlgG.


ensembl_gene_id: Amir_2340
symbol: Amir_2340
gene_biotype: protein_coding
description:
  PFAM: flagellar hook capping protein; KEGG: rpe:RPE_1177 flagellar basal body rod modification protein.


ensembl_gene_id: Amir_2344
symbol: Amir_2344
gene_biotype: protein_coding
description:
  KEGG: afw:Anae109_2216 FliI/YscN family ATPase; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase.


ensembl_gene_id: Amir_2346
symbol: Amir_2346
gene_biotype: protein_coding
description:
  TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; KEGG: bha:BH2457 flagellar motor switch protein G.


ensembl_gene_id: Amir_2347
symbol: Amir_2347
gene_biotype: protein_coding
description:
  Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.


ensembl_gene_id: Amir_2348
symbol: fliE
gene_biotype: protein_coding
description:
  PFAM: flagellar hook-basal body complex protein FliE; KEGG: pca:Pcar_1193 flagellar hook-basal body complex protein FliE.


ensembl_gene_id: Amir_2349
symbol: Amir_2349
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1078 domain protein; KEGG: efe:EFER_1855 flagellar component of cell- proximal portion of basal-body rod.


ensembl_gene_id: Amir_2350
symbol: Amir_2350
gene_biotype: protein_coding
description:
  Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.


ensembl_gene_id: Amir_2352
symbol: Amir_2352
gene_biotype: protein_coding
description:
  TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS; KEGG: pca:Pcar_1111 flagellar protein FliS.


ensembl_gene_id: Amir_2353
symbol: Amir_2353
gene_biotype: protein_coding
description:
  Flagellar hook-associated 2 domain protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.


ensembl_gene_id: Amir_2354
symbol: Amir_2354
gene_biotype: protein_coding
description:
  Flagellin domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.


ensembl_gene_id: Amir_2355
symbol: Amir_2355
gene_biotype: protein_coding
description:
  RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma- 70 region 3 domain protein; KEGG: gbm:Gbem_3764 RNA polymerase, sigma 28 subunit, FliA/WhiG.


ensembl_gene_id: Amir_2357
symbol: flgK
gene_biotype: protein_coding
description:
  TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: ppd:Ppro_3455 flagellar hook-associated protein FlgK.


ensembl_gene_id: Amir_2358
symbol: Amir_2358
gene_biotype: protein_coding
description:
  TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: gur:Gura_4098 flagellar hook-associated protein 3.


ensembl_gene_id: Amir_2359
symbol: fliW
gene_biotype: protein_coding
description:
  Protein of unknown function DUF180; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum.


ensembl_gene_id: Amir_2360
symbol: csrA
gene_biotype: protein_coding
description:
  Carbon storage regulator, CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.


ensembl_gene_id: Amir_2361
symbol: Amir_2361
gene_biotype: protein_coding
description:
  PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Proprotein convertase P; KEGG: mca:MCA0875 serine protease; Belongs to the peptidase S8 family.


ensembl_gene_id: Amir_2362
symbol: Amir_2362
gene_biotype: protein_coding
description:
  KEGG: sus:Acid_3859 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAS domain containing protein.


ensembl_gene_id: Amir_2363
symbol: Amir_2363
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: rce:RC1_0432 KDP operon transcriptional regulatory protein KdpE.


ensembl_gene_id: Amir_2365
symbol: Amir_2365
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: mxa:MXAN_6486 transcriptional regulator, MarR family.


ensembl_gene_id: Amir_2366
symbol: Amir_2366
gene_biotype: protein_coding
description:
  KEGG: bmj:BMULJ_06047 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: histidine kinase A domain protein; ATP- binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: histidine kinase A domain protein; PAS domain containing protein.


ensembl_gene_id: Amir_2367
symbol: Amir_2367
gene_biotype: protein_coding
description:
  KEGG: mag:amb2954 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein.


ensembl_gene_id: Amir_2368
symbol: Amir_2368
gene_biotype: protein_coding
description:
  Putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; response regulator receiver; SMART: response regulator receiver; KEGG: dvu:DVU0330 response regulator.


ensembl_gene_id: Amir_2370
symbol: Amir_2370
gene_biotype: protein_coding
description:
  KEGG: dal:Dalk_3918 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Hpt domain protein; PAS fold- 4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS domain containing protein.


ensembl_gene_id: Amir_2371
symbol: Amir_2371
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: sat:SYN_01373 hydrogenase transcriptional regulatory protein.


ensembl_gene_id: Amir_2372
symbol: Amir_2372
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: pol:Bpro_0417 transcriptional regulator, GntR family.


ensembl_gene_id: Amir_2374
symbol: Amir_2374
gene_biotype: protein_coding
description:
  PFAM: CHRD domain containing protein; SMART: CHRD domain containing protein; KEGG: pzu:PHZ_c0812 hypothetical protein.


ensembl_gene_id: Amir_2376
symbol: Amir_2376
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: efe:EFER_2801 putative MarR-family regulatory protein.


ensembl_gene_id: Amir_2377
symbol: Amir_2377
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: acr:Acry_0313 XRE family transcriptional regulator.


ensembl_gene_id: Amir_2380
symbol: Amir_2380
gene_biotype: protein_coding
description:
  PAS/PAC sensor signal transduction histidine kinase; KEGG: pen:PSEEN0086 alginate biosynthesis sensor protein KinB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; MASE1 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.


ensembl_gene_id: Amir_2383
symbol: Amir_2383
gene_biotype: protein_coding
description:
  PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: spe:Spro_3514 AsnC family transcriptional regulator.


ensembl_gene_id: Amir_2387
symbol: Amir_2387
gene_biotype: protein_coding
description:
  PFAM: RbsD or FucU transport; KEGG: csa:Csal_0367 RbsD or FucU transport; Belongs to the RbsD / FucU family.


ensembl_gene_id: Amir_2389
symbol: Amir_2389
gene_biotype: protein_coding
description:
  SMART: helix-turn-helix domain protein; KEGG: bac:BamMC406_3547 XRE family transcriptional regulator.


ensembl_gene_id: Amir_2390
symbol: Amir_2390
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: bpy:Bphyt_6333 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Amir_2395
symbol: Amir_2395
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; NAD- dependent epimerase/dehydratase; KEGG: pde:Pden_1769 3-oxoacyl-(acyl-carrier- protein) reductase.


ensembl_gene_id: Amir_2398
symbol: Amir_2398
gene_biotype: protein_coding
description:
  PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: tcx:Tcr_0016 RNA-binding S4.


ensembl_gene_id: Amir_2401
symbol: Amir_2401
gene_biotype: protein_coding
description:
  PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: smt:Smal_2998 FAD-binding 9 siderophore- interacting domain protein.


ensembl_gene_id: Amir_2403
symbol: Amir_2403
gene_biotype: protein_coding
description:
  KEGG: aha:AHA_2314 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI.


ensembl_gene_id: Amir_2404
symbol: Amir_2404
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: mmw:Mmwyl1_2762 extracellular solute-binding protein.


ensembl_gene_id: Amir_2406
symbol: Amir_2406
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:RL2327 putative transmembrane component of ABC transporter.


ensembl_gene_id: Amir_2408
symbol: Amir_2408
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ccs:CCNA_03389 lantibiotic transport ATP- binding protein.


ensembl_gene_id: Amir_2417
symbol: Amir_2417
gene_biotype: protein_coding
description:
  Pyruvate formate-lyase activating enzyme; Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine; Belongs to the organic radical-activating enzymes family.


ensembl_gene_id: Amir_2418
symbol: Amir_2418
gene_biotype: protein_coding
description:
  KEGG: rru:Rru_A3000 formate acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: pyruvate formate-lyase PFL; formate C- acetyltransferase glycine radical.


ensembl_gene_id: Amir_2421
symbol: Amir_2421
gene_biotype: protein_coding
description:
  TIGRFAM: conserved repeat domain protein; PFAM: Cna B domain protein; protein of unknown function DUF11; KEGG: colA; Cna B-type domain-containing protein.


ensembl_gene_id: Amir_2422
symbol: Amir_2422
gene_biotype: protein_coding
description:
  Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: rso:RS05498 putative transcription regulator protein.


ensembl_gene_id: Amir_2423
symbol: Amir_2423
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: scl:sce6363 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Amir_2430
symbol: Amir_2430
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: rlt:Rleg2_3945 transcriptional regulator, XRE family.


ensembl_gene_id: Amir_2435
symbol: Amir_2435
gene_biotype: protein_coding
description:
  Transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; KEGG: aba:Acid345_0656 transcriptional regulator, DeoR family.


ensembl_gene_id: Amir_2441
symbol: Amir_2441
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: bja:bll4873 hypothetical protein.


ensembl_gene_id: Amir_2442
symbol: Amir_2442
gene_biotype: protein_coding
description:
  PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: jan:Jann_2126 FAD-binding 9, siderophore- interacting.


ensembl_gene_id: Amir_2444
symbol: Amir_2444
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: ccs:CCNA_02438 quinone oxidoreductase.


ensembl_gene_id: Amir_2446
symbol: Amir_2446
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pmy:Pmen_4546 LysR family transcriptional regulator.


ensembl_gene_id: Amir_2447
symbol: Amir_2447
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF6 transmembrane; KEGG: dvm:DvMF_1193 protein of unknown function DUF6 transmembrane.


ensembl_gene_id: Amir_2454
symbol: Amir_2454
gene_biotype: protein_coding
description:
  PFAM: regulatory protein MarR; transcriptional regulator PadR family protein; SMART: regulatory protein MarR; KEGG: atc:AGR_C_466 hypothetical protein.


ensembl_gene_id: Amir_2456
symbol: Amir_2456
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: rsq:Rsph17025_3273 acetamidase/formamidase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Amir_2457
symbol: Amir_2457
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: gbe:GbCGDNIH1_0125 amide-UreA binding protein.


ensembl_gene_id: Amir_2458
symbol: Amir_2458
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsh:Rsph17029_4148 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Amir_2459
symbol: Amir_2459
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pca:Pcar_1867 ABC-type transport system protein.


ensembl_gene_id: Amir_2461
symbol: Amir_2461
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: ank:AnaeK_3358 alcohol dehydrogenase zinc- binding domain protein.


ensembl_gene_id: Amir_2464
symbol: Amir_2464
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: rce:RC1_3267 phosphate regulon transcriptional regulatory protein PhoB.


ensembl_gene_id: Amir_2465
symbol: Amir_2465
gene_biotype: protein_coding
description:
  PFAM: histidine kinase A domain protein; ATP- binding region ATPase domain protein; SMART: histidine kinase A domain protein; ATP- binding region ATPase domain protein; KEGG: scl:sce2655 two-component hybrid sensor and regulator.


ensembl_gene_id: Amir_2466
symbol: Amir_2466
gene_biotype: protein_coding
description:
  Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sat:SYN_02356 anti-sigma F factor antagonist.


ensembl_gene_id: Amir_2467
symbol: Amir_2467
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 2 sugar binding; PA14 domain protein; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; SMART: PA14 domain protein; LamG domain protein jellyroll fold domain protein; KEGG: sus:Acid_6668 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 2 family.


ensembl_gene_id: Amir_2468
symbol: Amir_2468
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: maq:Maqu_2048 major facilitator superfamily transporter.


ensembl_gene_id: Amir_2469
symbol: Amir_2469
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: met:M446_5037 GntR family transcriptional regulator.


ensembl_gene_id: Amir_2472
symbol: Amir_2472
gene_biotype: protein_coding
description:
  Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dvl:Dvul_2983 anti-sigma-factor antagonist.


ensembl_gene_id: Amir_2474
symbol: Amir_2474
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: afw:Anae109_0106 integral membrane sensor signal transduction histidine kinase.


ensembl_gene_id: Amir_2475
symbol: Amir_2475
gene_biotype: protein_coding
description:
  PFAM: chitin-binding domain 3 protein; KEGG: sml:Smlt4515 putative cellulose/chitin- binding protein.


ensembl_gene_id: Amir_2481
symbol: Amir_2481
gene_biotype: protein_coding
description:
  TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11; KEGG: bce:BC1592 cell surface protein.


ensembl_gene_id: Amir_2487
symbol: Amir_2487
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: ank:AnaeK_0122 serine/threonine protein kinase.


ensembl_gene_id: Amir_2492
symbol: Amir_2492
gene_biotype: protein_coding
description:
  TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; KEGG: eca:ECA1488 non-ribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.


ensembl_gene_id: Amir_2493
symbol: Amir_2493
gene_biotype: protein_coding
description:
  PFAM: Beta-ketoacyl synthase; Acyl transferase; KR domain protein; short-chain dehydrogenase/reductase SDR; 2- nitropropane dioxygenase NPD; phosphopantetheine-binding; KEGG: sus:Acid_1972 beta-ketoacyl synthase.


ensembl_gene_id: Amir_2494
symbol: Amir_2494
gene_biotype: protein_coding
description:
  PFAM: Beta-ketoacyl synthase; Acyl transferase; 4'- phosphopantetheinyl transferase; KEGG: sus:Acid_1973 beta-ketoacyl synthase.


ensembl_gene_id: Amir_2496
symbol: Amir_2496
gene_biotype: protein_coding
description:
  PFAM: alpha/beta hydrolase fold; KEGG: azc:AZC_1444 beta-ketoadipate enol-lactone hydrolase protein.


ensembl_gene_id: Amir_2497
symbol: Amir_2497
gene_biotype: protein_coding
description:
  TIGRFAM: glycosyltransferase, MGT family; PFAM: UDP-glucuronosyl/UDP-glucosyltransferase; KEGG: bcm:Bcenmc03_1778 glycosyl transferase family protein.


ensembl_gene_id: Amir_2500
symbol: Amir_2500
gene_biotype: protein_coding
description:
  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: mxa:MXAN_0345 putative N-acetylmuramoyl-L- alanine amidase.


ensembl_gene_id: Amir_2504
symbol: Amir_2504
gene_biotype: protein_coding
description:
  Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: sus:Acid_3701 RNA polymerase ECF-subfamily sigma factor.


ensembl_gene_id: Amir_2506
symbol: Amir_2506
gene_biotype: protein_coding
description:
  PFAM: Aldehyde Dehydrogenase; KEGG: bcm:Bcenmc03_6120 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: Amir_2511
symbol: Amir_2511
gene_biotype: protein_coding
description:
  PFAM: ATPase associated with various cellular activities AAA_5; ATPase associated with various cellular activities AAA_3; SMART: AAA ATPase; KEGG: mrd:Mrad2831_1397 ATPase.


ensembl_gene_id: Amir_2515
symbol: Amir_2515
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: scl:sce1222 putative AraC-like transcription regulator.


ensembl_gene_id: Amir_2519
symbol: Amir_2519
gene_biotype: protein_coding
description:
  TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: psb:Psyr_3359 phenazine biosynthesis PhzC/PhzF protein.


ensembl_gene_id: Amir_2523
symbol: Amir_2523
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: bph:Bphy_3357 EmrB/QacA family drug resistance transporter.


ensembl_gene_id: Amir_2524
symbol: Amir_2524
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: ppw:PputW619_3117 MarR family transcriptional regulator.


ensembl_gene_id: Amir_2528
symbol: Amir_2528
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; PFAM: transcription activator effector binding; regulatory protein MerR; SMART: regulatory protein MerR; KEGG: bcb:BCB4264_A2545 transcriptional regulator, MerR family.


ensembl_gene_id: Amir_2531
symbol: Amir_2531
gene_biotype: protein_coding
description:
  PFAM: tyrosine protein kinase; SMART: serine/threonine protein kinase; KEGG: scl:sce5109 protein kinase.


ensembl_gene_id: Amir_2532
symbol: Amir_2532
gene_biotype: protein_coding
description:
  PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: mpo:Mpop_1395 LPXTG-motif cell wall anchor domain protein.


ensembl_gene_id: Amir_2534
symbol: Amir_2534
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_CH00696 alpha-glucoside ABC transporter, substrate-binding protein.


ensembl_gene_id: Amir_2536
symbol: Amir_2536
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bja:blr7343 short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Amir_2538
symbol: Amir_2538
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: mag:amb1485 transcriptional regulator.


ensembl_gene_id: Amir_2540
symbol: Amir_2540
gene_biotype: protein_coding
description:
  PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase; helicase domain protein; KEGG: ABR142Wp; K01529.


ensembl_gene_id: Amir_2542
symbol: Amir_2542
gene_biotype: protein_coding
description:
  PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: aha:AHA_0491 AsnC family transcriptional regulator.


ensembl_gene_id: Amir_2548
symbol: Amir_2548
gene_biotype: protein_coding
description:
  PFAM: acriflavin resistance protein; KEGG: bcb:BCB4264_A5560 transporter, AcrB/AcrD/AcrF family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: Amir_2555
symbol: Amir_2555
gene_biotype: protein_coding
description:
  KEGG: met:M446_2712 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein.


ensembl_gene_id: Amir_2558
symbol: Amir_2558
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ank:AnaeK_2445 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Amir_2568
symbol: Amir_2568
gene_biotype: protein_coding
description:
  PFAM: LmbE family protein; Methyltransferase type 11; NodS family protein; Methyltransferase type 12; KEGG: psb:Psyr_3000 methyltransferase, putative.


ensembl_gene_id: Amir_2572
symbol: Amir_2572
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mca:MCA1942 sugar ABC transporter, permease protein.


ensembl_gene_id: Amir_2573
symbol: Amir_2573
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: smt:Smal_2681 monosaccharide-transporting ATPase.


ensembl_gene_id: Amir_2576
symbol: Amir_2576
gene_biotype: protein_coding
description:
  Beta-galactosidase; PFAM: glycoside hydrolase family 35; Glycoside hydrolase family 42 domain protein; KEGG: glb1l; galactosidase, beta 1-like.


ensembl_gene_id: Amir_2577
symbol: Amir_2577
gene_biotype: protein_coding
description:
  Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: scl:sce3081 lactose operon repressor.


ensembl_gene_id: Amir_2579
symbol: Amir_2579
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: dal:Dalk_4824 RNA polymerase, sigma-24 subunit, ECF subfamily.


ensembl_gene_id: Amir_2586
symbol: Amir_2586
gene_biotype: protein_coding
description:
  Endo-1,4-beta-xylanase; KEGG: XylD; endoxylanase D; PFAM: glycoside hydrolase family 10; cellulose- binding family II; SMART: glycoside hydrolase family 10; cellulose- binding family II.


ensembl_gene_id: Amir_2587
symbol: Amir_2587
gene_biotype: protein_coding
description:
  PFAM: Propeptide PepSY amd peptidase M4; PepSY- associated TM helix domain protein; KEGG: psb:Psyr_2687 PepSY-associated TM helix.


ensembl_gene_id: Amir_2589
symbol: Amir_2589
gene_biotype: protein_coding
description:
  PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: kpe:KPK_3281 tetracycline repressor protein class A from transposon 1721.


ensembl_gene_id: Amir_2593
symbol: Amir_2593
gene_biotype: protein_coding
description:
  PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; KEGG: reu:Reut_A1417 Appr-1-p processing.


ensembl_gene_id: Amir_2596
symbol: Amir_2596
gene_biotype: protein_coding
description:
  TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bpe:BP2620 membrane efflux protein.


ensembl_gene_id: Amir_2599
symbol: Amir_2599
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: sus:Acid_1594 GntR family transcriptional regulator.


ensembl_gene_id: Amir_2603
symbol: Amir_2603
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; KEGG: scl:sce6054 ECF family RNA polymerase sigma factor.


ensembl_gene_id: Amir_2605
symbol: Amir_2605
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: tgr:Tgr7_0733 NAD-dependent epimerase/dehydratase.


ensembl_gene_id: Amir_2606
symbol: Amir_2606
gene_biotype: protein_coding
description:
  Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Belongs to the anti-sigma-factor antagonist family.


ensembl_gene_id: Amir_2607
symbol: Amir_2607
gene_biotype: protein_coding
description:
  PFAM: ANTAR domain protein; KEGG: mpo:Mpop_5014 response regulator receiver and ANTAR domain protein.


ensembl_gene_id: Amir_2608
symbol: Amir_2608
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cak:Caul_1958 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Amir_2611
symbol: Amir_2611
gene_biotype: protein_coding
description:
  PFAM: NmrA family protein; dTDP-4-dehydrorhamnose reductase; KEGG: mxa:MXAN_5100 NmrA family protein.


ensembl_gene_id: Amir_2612
symbol: Amir_2612
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bpt:Bpet2994 MarR family transcriptional regulator.


ensembl_gene_id: Amir_2619
symbol: Amir_2619
gene_biotype: protein_coding
description:
  Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: rpd:RPD_3981 helix-turn-helix, type 11.


ensembl_gene_id: Amir_2620
symbol: Amir_2620
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ppw:PputW619_2963 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Amir_2621
symbol: Amir_2621
gene_biotype: protein_coding
description:
  PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: pat:Patl_3506 inosine/uridine-preferring nucleoside hydrolase.


ensembl_gene_id: Amir_2622
symbol: Amir_2622
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; Riboflavin kinase; flavin reductase domain protein FMN- binding; KEGG: xfa:XF1765 drug:proton antiporter.


ensembl_gene_id: Amir_2627
symbol: Amir_2627
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB0643 putative transport system permease protein.


ensembl_gene_id: Amir_2631
symbol: Amir_2631
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rso:RS02380 two-component sensor histidine kinase transcription regulator protein.


ensembl_gene_id: Amir_2633
symbol: Amir_2633
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: sal:Sala_3102 hypothetical protein.


ensembl_gene_id: Amir_2635
symbol: Amir_2635
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pla:Plav_2411 alcohol dehydrogenase.


ensembl_gene_id: Amir_2636
symbol: Amir_2636
gene_biotype: protein_coding
description:
  PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: mno:Mnod_4658 molybdopterin dehydrogenase FAD- binding.


ensembl_gene_id: Amir_2637
symbol: Amir_2637
gene_biotype: protein_coding
description:
  PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: azc:AZC_4623 putative dehydrogenase.


ensembl_gene_id: Amir_2645
symbol: Amir_2645
gene_biotype: protein_coding
description:
  PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: pol:Bpro_0095 transcriptional regulator NanR.


ensembl_gene_id: Amir_2648
symbol: Amir_2648
gene_biotype: protein_coding
description:
  TIGRFAM: ribose 5-phosphate isomerase; sugar- phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase; KEGG: similar to ribose 5-phosphate isomerase; K01808 ribose 5-phosphate isomerase B.


ensembl_gene_id: Amir_2651
symbol: Amir_2651
gene_biotype: protein_coding
description:
  PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Acetohydroxy acid isomeroreductase catalytic domain protein; KEGG: eca:ECA0869 hypothetical protein.


ensembl_gene_id: Amir_2652
symbol: Amir_2652
gene_biotype: protein_coding
description:
  TIGRFAM: CRISPR-associated protein, Cse3 family; PFAM: CRISPR-associated protein CT1974; KEGG: scl:sce0560 hypothetical protein.


ensembl_gene_id: Amir_2662
symbol: Amir_2662
gene_biotype: protein_coding
description:
  Methionine--tRNA ligase; PFAM: tRNA synthetase class I (M); KEGG: pen:PSEEN0982 methionine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: Amir_2663
symbol: Amir_2663
gene_biotype: protein_coding
description:
  PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; phosphoribosylglycinamide synthetase; KEGG: plu:plu0116 hypothetical protein.


ensembl_gene_id: Amir_2666
symbol: Amir_2666
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: acr:Acry_1185 extracellular solute-binding protein.


ensembl_gene_id: Amir_2668
symbol: Amir_2668
gene_biotype: protein_coding
description:
  PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: plu:plu0116 hypothetical protein.


ensembl_gene_id: Amir_2669
symbol: Amir_2669
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: ank:AnaeK_4388 major facilitator superfamily MFS_1.


ensembl_gene_id: Amir_2675
symbol: Amir_2675
gene_biotype: protein_coding
description:
  PFAM: Tetratricopeptide TPR_4; KEGG: afw:Anae109_3347 transcriptional activator domain-containing protein.


ensembl_gene_id: Amir_2676
symbol: Amir_2676
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bca:BCE_2589 ATP-binding transport protein NatA.


ensembl_gene_id: Amir_2678
symbol: Amir_2678
gene_biotype: protein_coding
description:
  Oleoyl-(acyl-carrier-protein) hydrolase; PFAM: Thioesterase; KEGG: bpd:BURPS668_A0873 pyochelin biosynthetic protein PchC.


ensembl_gene_id: Amir_2681
symbol: Amir_2681
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; Beta- ketoacyl synthase; KR domain protein; Acyl transferase; Erythronolide synthase docking; phosphopantetheine- binding; NAD-dependent epimerase/dehydratase; KEGG: eca:ECA0602 type I polyketide synthase.


ensembl_gene_id: Amir_2682
symbol: Amir_2682
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; Beta- ketoacyl synthase; Acyl transferase; KR domain protein; Erythronolide synthase docking; NAD-dependent epimerase/dehydratase; phosphopantetheine-binding; KEGG: mxa:MXAN_4527 polyketide synthase.


ensembl_gene_id: Amir_2683
symbol: Amir_2683
gene_biotype: protein_coding
description:
  PFAM: Acyl transferase; Beta-ketoacyl synthase; short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; Erythronolide synthase docking; NAD-dependent epimerase/dehydratase; phosphopantetheine- binding; KEGG: mxa:MXAN_4527 polyketide synthase.


ensembl_gene_id: Amir_2684
symbol: Amir_2684
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; Beta- ketoacyl synthase; Acyl transferase; KR domain protein; Erythronolide synthase docking; Thioesterase; NAD- dependent epimerase/dehydratase; phosphopantetheine- binding; KEGG: met:M446_0170 beta-ketoacyl synthase.


ensembl_gene_id: Amir_2685
symbol: Amir_2685
gene_biotype: protein_coding
description:
  TIGRFAM: proline-specific peptidase; PFAM: alpha/beta hydrolase fold; KEGG: rru:Rru_A2180 peptidase S33, tricorn interacting factor 1.


ensembl_gene_id: Amir_2688
symbol: Amir_2688
gene_biotype: protein_coding
description:
  PFAM: AMP-dependent synthetase and ligase; KEGG: gbm:Gbem_0542 amino acid adenylation domain protein.


ensembl_gene_id: Amir_2689
symbol: Amir_2689
gene_biotype: protein_coding
description:
  PFAM: AMP-dependent synthetase and ligase; KEGG: aeh:Mlg_0131 amino acid adenylation domain- containing protein.


ensembl_gene_id: Amir_2695
symbol: Amir_2695
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; Beta- ketoacyl synthase; Male sterility domain; Acyl transferase; KR domain protein; phosphopantetheine- binding; NAD-dependent epimerase/dehydratase; KEGG: met:M446_0170 beta-ketoacyl synthase.


ensembl_gene_id: Amir_2696
symbol: Amir_2696
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: reh:H16_A1278 ATP-dependent transcriptional regulator containing adenylate cyclase related domains.


ensembl_gene_id: Amir_2699
symbol: Amir_2699
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: psb:Psyr_1940 LuxR response regulator receiver.


ensembl_gene_id: Amir_2700
symbol: Amir_2700
gene_biotype: protein_coding
description:
  PFAM: histidine kinase dimerization and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: cps:CPS_1261 sensor histidine kinase.


ensembl_gene_id: Amir_2705
symbol: Amir_2705
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: afw:Anae109_2424 DNA mismatch repair protein MutS domain-containing protein.


ensembl_gene_id: Amir_2706
symbol: Amir_2706
gene_biotype: protein_coding
description:
  PFAM: periplasmic binding protein; KEGG: rle:RL3052 putative cationic solute-binding component of ABC transporter.


ensembl_gene_id: Amir_2707
symbol: Amir_2707
gene_biotype: protein_coding
description:
  PFAM: transport system permease protein; ABC-3 protein; KEGG: rec:RHECIAT_PC0000463 putative iron ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: Amir_2713
symbol: Amir_2713
gene_biotype: protein_coding
description:
  PFAM: NB-ARC domain protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: scl:sce5225 protein kinase.


ensembl_gene_id: Amir_2715
symbol: Amir_2715
gene_biotype: protein_coding
description:
  PFAM: Luciferase-like monooxygenase; KEGG: rpb:RPB_4431 coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin.


ensembl_gene_id: Amir_2716
symbol: Amir_2716
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Tetratricopeptide TPR_4; SMART: regulatory protein LuxR; KEGG: afw:Anae109_3347 transcriptional activator domain-containing protein.


ensembl_gene_id: Amir_2717
symbol: Amir_2717
gene_biotype: protein_coding
description:
  Phospho-2-dehydro-3-deoxyheptonate aldolase; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP).


ensembl_gene_id: Amir_2718
symbol: Amir_2718
gene_biotype: protein_coding
description:
  TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: gdj:Gdia_2404 drug resistance transporter, EmrB/QacA subfamily.


ensembl_gene_id: Amir_2719
symbol: Amir_2719
gene_biotype: protein_coding
description:
  TIGRFAM: amino acid adenylation domain protein; non- ribosomal peptide synthase; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: pap:PSPA7_2858 peptide synthase.


ensembl_gene_id: Amir_2721
symbol: Amir_2721
gene_biotype: protein_coding
description:
  PFAM: transport system permease protein; KEGG: yen:YE3620 iron-enterobactin transporter permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: Amir_2722
symbol: Amir_2722
gene_biotype: protein_coding
description:
  PFAM: transport system permease protein; KEGG: cvi:CV_2236 iron-enterobactin transporter membrane protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: Amir_2724
symbol: Amir_2724
gene_biotype: protein_coding
description:
  PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: cti:RALTA_B1102 siderophore-interacting protein.


ensembl_gene_id: Amir_2726
symbol: Amir_2726
gene_biotype: protein_coding
description:
  PFAM: AMP-dependent synthetase and ligase; KEGG: scl:sce3880 (2,3-dihydroxybenzoyl)adenylate synthase.


ensembl_gene_id: Amir_2727
symbol: Amir_2727
gene_biotype: protein_coding
description:
  TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like; KEGG: mxa:MXAN_3646 isochorismate synthase DhbC.


ensembl_gene_id: Amir_2728
symbol: Amir_2728
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: bcy:Bcer98_1754 2,3-dihydroxybenzoate-2,3- dehydrogenase.


ensembl_gene_id: Amir_2730
symbol: Amir_2730
gene_biotype: protein_coding
description:
  PFAM: transport system permease protein; KEGG: dac:Daci_3791 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: Amir_2731
symbol: Amir_2731
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bte:BTH_I1413 iron compound ABC transporter, ATP-binding protein.


ensembl_gene_id: Amir_2732
symbol: Amir_2732
gene_biotype: protein_coding
description:
  PFAM: periplasmic binding protein; KEGG: bpd:BURPS668_3152 putative iron chelate uptake ABC transporter, periplasmic solute-binding protein.


ensembl_gene_id: Amir_2733
symbol: Amir_2733
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: bcr:BCAH187_A3038 DNA-binding protein.


ensembl_gene_id: Amir_2736
symbol: Amir_2736
gene_biotype: protein_coding
description:
  PFAM: histidine kinase dimerization and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: scl:sce5432 putative two-component system sensor kinase.


ensembl_gene_id: Amir_2750
symbol: Amir_2750
gene_biotype: protein_coding
description:
  YD repeat protein; KEGG: bcb:BCB4264_A3445 wall-associated protein; TIGRFAM: YD repeat protein; PFAM: PA14 domain protein; YD repeat-containing protein; SMART: PA14 domain protein; LamG domain protein jellyroll fold domain protein.


ensembl_gene_id: Amir_2753
symbol: Amir_2753
gene_biotype: protein_coding
description:
  Transcriptional regulator, RpiR family; PFAM: sugar isomerase (SIS); KEGG: rso:RSc1377 hypothetical protein.


ensembl_gene_id: Amir_2754
symbol: Amir_2754
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: bpy:Bphyt_2088 major facilitator superfamily MFS_1.


ensembl_gene_id: Amir_2757
symbol: Amir_2757
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; response regulator receiver; KEGG: bxe:Bxe_A1815 two component LuxR family transcriptional regulator.


ensembl_gene_id: Amir_2758
symbol: Amir_2758
gene_biotype: protein_coding
description:
  PFAM: histidine kinase dimerization and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: mch:Mchl_4713 histidine kinase.


ensembl_gene_id: Amir_2764
symbol: Amir_2764
gene_biotype: protein_coding
description:
  PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sdn:Sden_2266 TPR repeat-containing protein.


ensembl_gene_id: Amir_2769
symbol: Amir_2769
gene_biotype: protein_coding
description:
  TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: mxa:MXAN_3422 copper-translocating P-type ATPase.


ensembl_gene_id: Amir_2772
symbol: Amir_2772
gene_biotype: protein_coding
description:
  PFAM: Vitamin K epoxide reductase; SMART: Vitamin K epoxide reductase; KEGG: scl:sce9005 hypothetical protein.


ensembl_gene_id: Amir_2773
symbol: Amir_2773
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: bid:Bind_3241 ECF subfamily RNA polymerase sigma-24 factor.


ensembl_gene_id: Amir_2776
symbol: Amir_2776
gene_biotype: protein_coding
description:
  Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: bha:BH2103 hypothetical protein.


ensembl_gene_id: Amir_2777
symbol: Amir_2777
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: bcb:BCB4264_A1961 ABC transporter, permease/ATP-binding protein.


ensembl_gene_id: Amir_2780
symbol: Amir_2780
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: kpn:KPN_00876 putative DeoR-type transcriptional regulator.


ensembl_gene_id: Amir_2781
symbol: Amir_2781
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 5; protein of unknown function DUF291; cellulose-binding family II; SMART: cellulose-binding family II; KEGG: bha:BH0603 endo-beta-1,4-glucanase (celulase B).


ensembl_gene_id: Amir_2782
symbol: Amir_2782
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mxa:MXAN_1575 transcriptional regulator, LysR family.


ensembl_gene_id: Amir_2783
symbol: Amir_2783
gene_biotype: protein_coding
description:
  PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: aav:Aave_3768 threonine dehydratase.


ensembl_gene_id: Amir_2784
symbol: Amir_2784
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: rle:RL4049 hypothetical protein.


ensembl_gene_id: Amir_2788
symbol: Amir_2788
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rpc:RPC_1740 RNA polymerase sigma factor.


ensembl_gene_id: Amir_2793
symbol: Amir_2793
gene_biotype: protein_coding
description:
  PFAM: GAF domain protein; ANTAR domain protein; SMART: GAF domain protein; KEGG: sus:Acid_4463 putative GAF sensor protein.


ensembl_gene_id: Amir_2803
symbol: Amir_2803
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase group 1; KEGG: bmn:BMA10247_A2262 glycosyl transferase, group 1 family protein.


ensembl_gene_id: Amir_2805
symbol: Amir_2805
gene_biotype: protein_coding
description:
  PFAM: ANTAR domain protein; GAF domain protein; SMART: GAF domain protein; KEGG: azo:azo1490 putative signaling protein.


ensembl_gene_id: Amir_2807
symbol: Amir_2807
gene_biotype: protein_coding
description:
  Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: mag:amb0333 anti-anti-sigma regulatory factor.


ensembl_gene_id: Amir_2811
symbol: Amir_2811
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; response regulator receiver; KEGG: scl:sce5431 two-component system response regulator.


ensembl_gene_id: Amir_2815
symbol: Amir_2815
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: sus:Acid_5291 methyltransferase type 11.


ensembl_gene_id: Amir_2816
symbol: Amir_2816
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: nwi:Nwi_2406 NAD-dependent epimerase/dehydratase.


ensembl_gene_id: Amir_2821
symbol: Amir_2821
gene_biotype: protein_coding
description:
  TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KR domain protein; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; short- chain dehydrogenase/reductase SDR; KEGG: bcj:BCAM2033 putative UDP-glucose 4-epimerase.


ensembl_gene_id: Amir_2828
symbol: Amir_2828
gene_biotype: protein_coding
description:
  PFAM: NmrA family protein; NAD-dependent epimerase/dehydratase; KEGG: mxa:MXAN_2144 NmrA-like family protein.


ensembl_gene_id: Amir_2830
symbol: Amir_2830
gene_biotype: protein_coding
description:
  Transcriptional regulator, LacI family; KEGG: smd:Smed_4158 alanine racemase; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI.


ensembl_gene_id: Amir_2832
symbol: Amir_2832
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: mlo:mlr2244 sugar binding protein of sugar ABC transporter.


ensembl_gene_id: Amir_2834
symbol: Amir_2834
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:RL4375 putative transmembrane component of ABC transporter.


ensembl_gene_id: Amir_2837
symbol: Amir_2837
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 43; KEGG: scl:sce4598 endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 43 family.


ensembl_gene_id: Amir_2839
symbol: Amir_2839
gene_biotype: protein_coding
description:
  PFAM: TAP domain protein; alpha/beta hydrolase fold; KEGG: bph:Bphy_7397 TAP domain-containing protein.


ensembl_gene_id: Amir_2840
symbol: Amir_2840
gene_biotype: protein_coding
description:
  PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: cak:Caul_5271 ethyl tert-butyl ether degradation EthD.


ensembl_gene_id: Amir_2841
symbol: Amir_2841
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: bcr:BCAH187_A5339 transcriptional regulator, MerR family.


ensembl_gene_id: Amir_2842
symbol: Amir_2842
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: acp:A2cp1_0906 transcriptional regulator, LuxR family.


ensembl_gene_id: Amir_2845
symbol: Amir_2845
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: dvm:DvMF_1479 transcriptional regulator, GntR family.


ensembl_gene_id: Amir_2846
symbol: Amir_2846
gene_biotype: protein_coding
description:
  PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding; KEGG: rme:Rmet_5039 acetolactate synthase, large subunit; Belongs to the TPP enzyme family.


ensembl_gene_id: Amir_2849
symbol: Amir_2849
gene_biotype: protein_coding
description:
  5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase B/oxoprolinase; KEGG: mes:Meso_3732 hydantoinase B/oxoprolinase.


ensembl_gene_id: Amir_2850
symbol: Amir_2850
gene_biotype: protein_coding
description:
  5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: mno:Mnod_8488 hydantoinase/oxoprolinase.


ensembl_gene_id: Amir_2851
symbol: Amir_2851
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL100063 putative ABC transporter permease component.


ensembl_gene_id: Amir_2852
symbol: Amir_2852
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oca:OCAR_6772 ABC transporter.


ensembl_gene_id: Amir_2853
symbol: Amir_2853
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: azc:AZC_2725 ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Amir_2854
symbol: Amir_2854
gene_biotype: protein_coding
description:
  Putative spermidine/putrescine-binding periplasmic protein; KEGG: bph:Bphy_6624 extracellular solute-binding protein.


ensembl_gene_id: Amir_2855
symbol: Amir_2855
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mmw:Mmwyl1_4073 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Amir_2857
symbol: Amir_2857
gene_biotype: protein_coding
description:
  PFAM: Helix-turn-helix type 11 domain protein; protein of unknown function UPF0074; KEGG: pol:Bpro_0147 helix-turn-helix, type 11.


ensembl_gene_id: Amir_2861
symbol: Amir_2861
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: similar to bromodomain adjacent to zinc finger domain, 1B; K11658 bromodomain adjacent to zinc finger domain protein 1B.


ensembl_gene_id: Amir_2874
symbol: Amir_2874
gene_biotype: protein_coding
description:
  PFAM: transport system permease protein; KEGG: rce:RC1_3860 hemin transport system permease protein HmuU, putative; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: Amir_2875
symbol: hmuV
gene_biotype: protein_coding
description:
  ABC transporter related; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.


ensembl_gene_id: Amir_2876
symbol: Amir_2876
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: cti:RALTA_B2062 conserved hypothetical protein; putative exported protein.


ensembl_gene_id: Amir_2877
symbol: Amir_2877
gene_biotype: protein_coding
description:
  TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: Htaa domain protein; KEGG: GJ12556 gene product from transcript GJ12556- RA.


ensembl_gene_id: Amir_2879
symbol: Amir_2879
gene_biotype: protein_coding
description:
  PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: bur:Bcep18194_B0744 TetR family transcriptional regulator.


ensembl_gene_id: Amir_2880
symbol: Amir_2880
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF916 cell surface putative; KEGG: mex:Mext_2409 hypothetical protein.


ensembl_gene_id: Amir_2882
symbol: trpF
gene_biotype: protein_coding
description:
  PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: mpt:Mpe_A2158 phosphoribosylanthranilate isomerase; Belongs to the TrpF family.


ensembl_gene_id: Amir_2891
symbol: Amir_2891
gene_biotype: protein_coding
description:
  Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: swi:Swit_1768 regulatory protein, TetR.


ensembl_gene_id: Amir_2893
symbol: Amir_2893
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: met:M446_4600 cyclic nucleotide-binding protein.


ensembl_gene_id: Amir_2896
symbol: Amir_2896
gene_biotype: protein_coding
description:
  TIGRFAM: glycosyltransferase, MGT family; PFAM: protein of unknown function DUF1205; glycosyl transferase family 28; Glycosyltransferase 28 domain; KEGG: ses:SARI_00205 hypothetical protein.


ensembl_gene_id: Amir_2897
symbol: Amir_2897
gene_biotype: protein_coding
description:
  PFAM: histidine kinase A domain protein; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: bxe:Bxe_A0786 putative lipoprotein.


ensembl_gene_id: Amir_2898
symbol: Amir_2898
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: bcz:pE33L466_0331 MerR family transcriptional regulator.


ensembl_gene_id: Amir_2908
symbol: Amir_2908
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein.


ensembl_gene_id: Amir_2910
symbol: Amir_2910
gene_biotype: protein_coding
description:
  Multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; GAF domain protein; PAS fold-2 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; KEGG: sml:Smlt2382 putative two-component sensor histidine kinase protein.


ensembl_gene_id: Amir_2911
symbol: Amir_2911
gene_biotype: protein_coding
description:
  PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sus:Acid_5974 serine phosphatase.


ensembl_gene_id: Amir_2912
symbol: Amir_2912
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: mag:amb3470 FOG: CheY-like receiver.


ensembl_gene_id: Amir_2916
symbol: Amir_2916
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cak:Caul_1370 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Amir_2918
symbol: Amir_2918
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120663 putative permease component of ABC transporter.


ensembl_gene_id: Amir_2919
symbol: Amir_2919
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ABC transporter membrane spanning protein (sugar); K02025 multiple sugar transport system permease protein.


ensembl_gene_id: Amir_2920
symbol: Amir_2920
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: rle:pRL120659 putative substrate-binding component of ABC transporter.


ensembl_gene_id: Amir_2922
symbol: Amir_2922
gene_biotype: protein_coding
description:
  PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: rlt:Rleg2_4009 D-isomer specific 2- hydroxyacid dehydrogenase NAD-binding.


ensembl_gene_id: Amir_2923
symbol: Amir_2923
gene_biotype: protein_coding
description:
  PFAM: regulatory protein DeoR; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein DeoR; KEGG: ppw:PputW619_1959 LacI family transcription regulator.


ensembl_gene_id: Amir_2925
symbol: Amir_2925
gene_biotype: protein_coding
description:
  Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; transcriptional regulator domain protein; KEGG: afw:Anae109_3347 transcriptional activator domain-containing protein.


ensembl_gene_id: Amir_2930
symbol: Amir_2930
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: bcy:Bcer98_1160 two component LuxR family transcriptional regulator.


ensembl_gene_id: Amir_2936
symbol: Amir_2936
gene_biotype: protein_coding
description:
  Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; TPR repeat- containing protein; Tetratricopeptide TPR_4; transcriptional regulator domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: scl:sce6858 hypothetical protein.


ensembl_gene_id: Amir_2945
symbol: Amir_2945
gene_biotype: protein_coding
description:
  TIGRFAM: Rhs element Vgr protein; PFAM: Rhs element Vgr protein; KEGG: gbm:Gbem_2550 rhs element Vgr protein.


ensembl_gene_id: Amir_2952
symbol: Amir_2952
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: bcy:Bcer98_0214 two component LuxR family transcriptional regulator.


ensembl_gene_id: Amir_2954
symbol: Amir_2954
gene_biotype: protein_coding
description:
  Transcriptional regulator, putative ATPase, winged helix family; PFAM: transcriptional activator domain; Tetratricopeptide TPR_4; transcriptional regulator domain protein; KEGG: afw:Anae109_3347 transcriptional activator domain-containing protein.


ensembl_gene_id: Amir_2956
symbol: Amir_2956
gene_biotype: protein_coding
description:
  Transcriptional regulator, putative ATPase, winged helix family; PFAM: transcriptional activator domain; transcriptional regulator domain protein; KEGG: bpm:BURPS1710b_1102 putative lipoprotein.


ensembl_gene_id: Amir_2959
symbol: Amir_2959
gene_biotype: protein_coding
description:
  PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pat:Patl_1928 NADH:flavin oxidoreductase/NADH oxidase.


ensembl_gene_id: Amir_2964
symbol: ligA
gene_biotype: protein_coding
description:
  DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.


ensembl_gene_id: Amir_2969
symbol: Amir_2969
gene_biotype: protein_coding
description:
  Putative signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: mpt:Mpe_A0358 two-component sensor histidine kinase-like protein.


ensembl_gene_id: Amir_2972
symbol: Amir_2972
gene_biotype: protein_coding
description:
  PFAM: Xylose isomerase domain protein TIM barrel; KEGG: lch:Lcho_4327 xylose isomerase domain- containing protein.


ensembl_gene_id: Amir_2973
symbol: Amir_2973
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rec:RHECIAT_CH0002098 putative dehydrogenase protein.


ensembl_gene_id: Amir_2977
symbol: Amir_2977
gene_biotype: protein_coding
description:
  Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: psb:Psyr_3154 regulatory protein, TetR.


ensembl_gene_id: Amir_2978
symbol: Amir_2978
gene_biotype: protein_coding
description:
  Xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase family 3 domain protein; KEGG: beta-glucosidase-related glycosidases.


ensembl_gene_id: Amir_2979
symbol: Amir_2979
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: floR; florfenicol/chloramphenicol resistance transporter protein.


ensembl_gene_id: Amir_2981
symbol: Amir_2981
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1684; KEGG: acp:A2cp1_0109 protein of unknown function DUF1684.


ensembl_gene_id: Amir_2985
symbol: Amir_2985
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000203 putative sugar ABC transporter, permease protein.


ensembl_gene_id: Amir_2986
symbol: Amir_2986
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 31; KEGG: bha:BH1905 alpha-xylosidase YicI; Belongs to the glycosyl hydrolase 31 family.


ensembl_gene_id: Amir_2987
symbol: Amir_2987
gene_biotype: protein_coding
description:
  Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: mmr:Mmar10_0065 ArsR family transcriptional regulator.


ensembl_gene_id: Amir_2988
symbol: Amir_2988
gene_biotype: protein_coding
description:
  Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; SMART: regulatory protein LacI; KEGG: bam:Bamb_4929 LacI family transcription regulator.


ensembl_gene_id: Amir_2992
symbol: Amir_2992
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein; KEGG: transcriptional regulator protein.


ensembl_gene_id: Amir_2993
symbol: Amir_2993
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: acp:A2cp1_1436 methyltransferase type 11.


ensembl_gene_id: Amir_2998
symbol: Amir_2998
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Tellurite resistance methyltransferase, TehB, core; thiopurine S- methyltransferase; Methyltransferase type 12; KEGG: methyltransferase type 12.


ensembl_gene_id: Amir_2999
symbol: Amir_2999
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein; KEGG: reh:H16_B1998 transcriptional regulator, XRE- family.


ensembl_gene_id: Amir_3002
symbol: Amir_3002
gene_biotype: protein_coding
description:
  PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: tmz:Tmz1t_2342 exonuclease RNase T and DNA polymerase III.


ensembl_gene_id: Amir_3003
symbol: Amir_3003
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; SMART: regulatory protein MerR; KEGG: cja:CJA_2025 MerR-family transcriptional regulator.


ensembl_gene_id: Amir_3006
symbol: Amir_3006
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_0970 ABC transporter, ATPase subunit.


ensembl_gene_id: Amir_3008
symbol: Amir_3008
gene_biotype: protein_coding
description:
  PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; PglZ domain protein; KEGG: tbd:Tbd_1468 hypothetical protein.


ensembl_gene_id: Amir_3009
symbol: Amir_3009
gene_biotype: protein_coding
description:
  PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: lch:Lcho_3323 alpha amylase catalytic region.


ensembl_gene_id: Amir_3011
symbol: Amir_3011
gene_biotype: protein_coding
description:
  PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: afw:Anae109_2808 NADP oxidoreductase coenzyme F420-dependent.


ensembl_gene_id: Amir_3015
symbol: Amir_3015
gene_biotype: protein_coding
description:
  PFAM: sodium/calcium exchanger membrane region; KEGG: dvl:Dvul_0633 sodium/calcium exchanger membrane region.


ensembl_gene_id: Amir_3016
symbol: Amir_3016
gene_biotype: protein_coding
description:
  PFAM: FAD-binding 9 siderophore-interacting domain protein; Siderophore-interacting protein; KEGG: pag:PLES_28941 SIP.


ensembl_gene_id: Amir_3018
symbol: Amir_3018
gene_biotype: protein_coding
description:
  TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: acr:Acry_0325 PhzF family phenazine biosynthesis protein.


ensembl_gene_id: Amir_3020
symbol: Amir_3020
gene_biotype: protein_coding
description:
  PFAM: NADPH-dependent FMN reductase; NAD(P)H dehydrogenase (quinone); KEGG: rsp:RSP_3069 NADPH-dependent FMN reductase.


ensembl_gene_id: Amir_3021
symbol: Amir_3021
gene_biotype: protein_coding
description:
  PFAM: WGR domain protein; SMART: WGR domain protein; KEGG: mrd:Mrad2831_1394 WGR domain-containing protein.


ensembl_gene_id: Amir_3025
symbol: Amir_3025
gene_biotype: protein_coding
description:
  PFAM: ABC transporter transmembrane region; ABC transporter related; KEGG: mpo:Mpop_2313 lipid A ABC exporter family, fused ATPase and inner membrane subunits.


ensembl_gene_id: Amir_3026
symbol: Amir_3026
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: maq:Maqu_2187 ABC transporter related.


ensembl_gene_id: Amir_3027
symbol: Amir_3027
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 12; KEGG: bja:blr1964 hypothetical protein; Belongs to the glycosyl hydrolase 12 (cellulase H) family.


ensembl_gene_id: Amir_3033
symbol: Amir_3033
gene_biotype: protein_coding
description:
  PFAM: Endonuclease/exonuclease/phosphatase; Phosphoesterase HXTX; DNA polymerase beta domain protein region; KEGG: scl:sce0152 polynucleotide adenyltransferase.


ensembl_gene_id: Amir_3037
symbol: Amir_3037
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF162; KEGG: rru:Rru_A1412 4Fe-4S ferredoxin, iron-sulfur binding.


ensembl_gene_id: Amir_3038
symbol: Amir_3038
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: sus:Acid_5763 hypothetical protein.


ensembl_gene_id: Amir_3039
symbol: Amir_3039
gene_biotype: protein_coding
description:
  PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: scl:sce0751 GntR family transcriptional regulator.


ensembl_gene_id: Amir_3040
symbol: Amir_3040
gene_biotype: protein_coding
description:
  PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: ppw:PputW619_1959 LacI family transcription regulator.


ensembl_gene_id: Amir_3041
symbol: rbsA
gene_biotype: protein_coding
description:
  ABC transporter related; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.


ensembl_gene_id: Amir_3042
symbol: Amir_3042
gene_biotype: protein_coding
description:
  Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: bac:BamMC406_1213 monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Amir_3043
symbol: Amir_3043
gene_biotype: protein_coding
description:
  Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: bxe:Bxe_B1037 ABC sugar transporter, inner membrane subunit; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Amir_3044
symbol: Amir_3044
gene_biotype: protein_coding
description:
  TIGRFAM: rhamnose ABC transporter, periplasmic rhamnose-binding protein; KEGG: bph:Bphy_3460 rhamnose ABC transporter, periplasmic rhamnose-binding protein.


ensembl_gene_id: Amir_3045
symbol: Amir_3045
gene_biotype: protein_coding
description:
  TIGRFAM: L-rhamnose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; KEGG: acr:Acry_2987 L-rhamnose isomerase.


ensembl_gene_id: Amir_3046
symbol: Amir_3046
gene_biotype: protein_coding
description:
  TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: class II aldolase/adducin family protein; KR domain protein; short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: rde:RD1_3083 short chain dehydrogenase.


ensembl_gene_id: Amir_3051
symbol: Amir_3051
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: smt:Smal_0276 transcriptional regulator, LysR family.


ensembl_gene_id: Amir_3056
symbol: Amir_3056
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: hypothetical protein; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein.


ensembl_gene_id: Amir_3066
symbol: Amir_3066
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: dde:Dde_1329 dipeptide ABC transporter, solute-binding protein.


ensembl_gene_id: Amir_3067
symbol: Amir_3067
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_1328 dipeptide ABC transporter, permease protein.


ensembl_gene_id: Amir_3068
symbol: Amir_3068
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_1327 dipeptide ABC transporter, permease protein.


ensembl_gene_id: Amir_3071
symbol: Amir_3071
gene_biotype: protein_coding
description:
  KEGG: scl:sce4939 hypothetical protein; TIGRFAM: asparagine synthase (glutamine- hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II.


ensembl_gene_id: Amir_3075
symbol: Amir_3075
gene_biotype: protein_coding
description:
  PFAM: aminotransferase class-III; KEGG: rsq:Rsph17025_3685 hypothetical protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Amir_3076
symbol: Amir_3076
gene_biotype: protein_coding
description:
  Acetylornithine transaminase; PFAM: aminotransferase class-III; KEGG: aba:Acid345_3989 4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Amir_3078
symbol: metE
gene_biotype: protein_coding
description:
  5-methyltetrahydropteroyltriglutamate/homocystei neS-methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.


ensembl_gene_id: Amir_3088
symbol: Amir_3088
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: rso:RSc2325 transcription regulator protein.


ensembl_gene_id: Amir_3090
symbol: Amir_3090
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: kpe:KPK_2589 transcriptional regulator, LysR family.


ensembl_gene_id: Amir_3096
symbol: Amir_3096
gene_biotype: protein_coding
description:
  Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: dal:Dalk_3679 transcriptional regulator, ArsR family.


ensembl_gene_id: Amir_3097
symbol: Amir_3097
gene_biotype: protein_coding
description:
  TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: afe:Lferr_0209 heavy metal translocating P- type ATPase.


ensembl_gene_id: Amir_3098
symbol: Amir_3098
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: aba:Acid345_3929 HAD-superfamily hydrolase subfamily IA, variant 3.


ensembl_gene_id: Amir_3102
symbol: ahcY
gene_biotype: protein_coding
description:
  Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.


ensembl_gene_id: Amir_3103
symbol: metK
gene_biotype: protein_coding
description:
  S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.


ensembl_gene_id: Amir_3106
symbol: Amir_3106
gene_biotype: protein_coding
description:
  PFAM: Ricin B lectin; glycoside hydrolase clan GH- D; SMART: Ricin B lectin; KEGG: cak:Caul_2129 alpha-galactosidase.


ensembl_gene_id: Amir_3108
symbol: Amir_3108
gene_biotype: protein_coding
description:
  PFAM: Ricin B lectin; lipolytic protein G-D-S-L family; SMART: Ricin B lectin; KEGG: hypothetical protein.


ensembl_gene_id: Amir_3109
symbol: Amir_3109
gene_biotype: protein_coding
description:
  PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: eta:ETA_13590 flavoprotein monooxygenase.


ensembl_gene_id: Amir_3110
symbol: Amir_3110
gene_biotype: protein_coding
description:
  PFAM: aminotransferase class I and II; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: mxa:MXAN_2571 aminotransferase, class II.


ensembl_gene_id: Amir_3111
symbol: Amir_3111
gene_biotype: protein_coding
description:
  PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: bav:BAV1824 transcriptional regulator.


ensembl_gene_id: Amir_3118
symbol: Amir_3118
gene_biotype: protein_coding
description:
  PFAM: NmrA family protein; dTDP-4-dehydrorhamnose reductase; KEGG: mlo:mlr0239 hypothetical protein.


ensembl_gene_id: Amir_3121
symbol: Amir_3121
gene_biotype: protein_coding
description:
  PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: xau:Xaut_2796 cyclic nucleotide-binding protein.


ensembl_gene_id: Amir_3126
symbol: Amir_3126
gene_biotype: protein_coding
description:
  PFAM: FAD linked oxidase domain protein; KEGG: mxa:MXAN_6144 putative oxygen-dependent FAD- linked oxidoreductase.


ensembl_gene_id: Amir_3128
symbol: Amir_3128
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: scl:sce1114 LysR family transcriptional regulator.


ensembl_gene_id: Amir_3131
symbol: Amir_3131
gene_biotype: protein_coding
description:
  PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier- protein (ACP)] synthase III; KEGG: gdi:GDI3075 putative 3-oxoacyl-[acyl-carrier- protein] synthase 3 (3-oxoacyl [acyl-carrier-protein] synthase III) (beta-ketoacyl-ACP synthase III (KAS III).


ensembl_gene_id: Amir_3133
symbol: Amir_3133
gene_biotype: protein_coding
description:
  PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: bpy:Bphyt_6246 3-oxoacyl-(acyl-carrier- protein (ACP)) synthase III domain protein.


ensembl_gene_id: Amir_3134
symbol: Amir_3134
gene_biotype: protein_coding
description:
  PFAM: aminotransferase class-III; protein of unknown function RIO1; aminoglycoside phosphotransferase; ABC-1 domain protein; KEGG: sus:Acid_1674 aminotransferase.


ensembl_gene_id: Amir_3135
symbol: Amir_3135
gene_biotype: protein_coding
description:
  PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: bur:Bcep18194_C6793 beta-hydroxyacid dehydrogenase.


ensembl_gene_id: Amir_3137
symbol: Amir_3137
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ret:RHE_PE00158 methyltransferase protein.


ensembl_gene_id: Amir_3139
symbol: Amir_3139
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Male sterility domain; NAD-dependent epimerase/dehydratase; KEGG: 3-oxoacyl-(acyl-carrier-protein) reductase protein; K00059 3-oxoacyl-.


ensembl_gene_id: Amir_3141
symbol: Amir_3141
gene_biotype: protein_coding
description:
  PFAM: deoxyribose-phosphate aldolase/phospho-2- dehydro-3-deoxyheptonate aldolase; KEGG: bur:Bcep18194_C6861 fructose-bisphosphate aldolase.


ensembl_gene_id: Amir_3142
symbol: Amir_3142
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: reu:Reut_C6082 zinc-containing alcohol dehydrogenase superfamily protein.


ensembl_gene_id: Amir_3144
symbol: Amir_3144
gene_biotype: protein_coding
description:
  PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; KEGG: esa:ESA_00979 hypothetical protein.


ensembl_gene_id: Amir_3151
symbol: Amir_3151
gene_biotype: protein_coding
description:
  PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: bvi:Bcep1808_6442 arsenical pump membrane protein.


ensembl_gene_id: Amir_3157
symbol: Amir_3157
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.


ensembl_gene_id: Amir_3158
symbol: Amir_3158
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family.


ensembl_gene_id: Amir_3159
symbol: Amir_3159
gene_biotype: protein_coding
description:
  TIGRFAM: Mn2+/Fe2+ transporter, NRAMP family; PFAM: natural resistance-associated macrophage protein; KEGG: bcb:BCB4264_A1874 transport protein, NRAMP family.


ensembl_gene_id: Amir_3160
symbol: Amir_3160
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF955; helix- turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: ppd:Ppro_0104 helix-turn-helix domain- containing protein.


ensembl_gene_id: Amir_3163
symbol: Amir_3163
gene_biotype: protein_coding
description:
  PFAM: lipolytic protein G-D-S-L family; KEGG: scl:sce8862 BKRF1 encodes EBNA-1 protein, latent cycle gene.


ensembl_gene_id: Amir_3164
symbol: Amir_3164
gene_biotype: protein_coding
description:
  Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: mca:MCA1686 anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.


ensembl_gene_id: Amir_3171
symbol: Amir_3171
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: msl:Msil_0872 alcohol dehydrogenase GroES domain protein.


ensembl_gene_id: Amir_3174
symbol: Amir_3174
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: neu:NE0720 ABC transporter permease/ATP- binding protein.


ensembl_gene_id: Amir_3175
symbol: Amir_3175
gene_biotype: protein_coding
description:
  PFAM: sodium/hydrogen exchanger; KEGG: mxa:MXAN_0260 putative cation transporter/universal stress family protein.


ensembl_gene_id: Amir_3178
symbol: Amir_3178
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Tetratricopeptide TPR_4; Bacterio-opsin activator HTH domain protein; SMART: regulatory protein LuxR; KEGG: GK24882 gene product from transcript GK24882- RA.


ensembl_gene_id: Amir_3179
symbol: Amir_3179
gene_biotype: protein_coding
description:
  PFAM: Acyl transferase; short-chain dehydrogenase/reductase SDR; Beta-ketoacyl synthase; KR domain protein; Erythronolide synthase docking; phosphopantetheine-binding; NAD-dependent epimerase/dehydratase; KEGG: mxa:MXAN_4527 polyketide synthase.


ensembl_gene_id: Amir_3180
symbol: Amir_3180
gene_biotype: protein_coding
description:
  PFAM: Acyl transferase; short-chain dehydrogenase/reductase SDR; Beta-ketoacyl synthase; KR domain protein; Erythronolide synthase docking; NAD- dependent epimerase/dehydratase; phosphopantetheine- binding; KEGG: met:M446_0170 beta-ketoacyl synthase.


ensembl_gene_id: Amir_3184
symbol: Amir_3184
gene_biotype: protein_coding
description:
  PFAM: tryptophan halogenase; monooxygenase FAD- binding; FAD dependent oxidoreductase; KEGG: scl:sce7303 putative dehyrogenase.


ensembl_gene_id: Amir_3185
symbol: Amir_3185
gene_biotype: protein_coding
description:
  PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: bid:Bind_3102 3-hydroxybutyryl-CoA dehydrogenase.


ensembl_gene_id: Amir_3187
symbol: Amir_3187
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: hch:HCH_03452 acyl-CoA dehydrogenase.


ensembl_gene_id: Amir_3188
symbol: Amir_3188
gene_biotype: protein_coding
description:
  TIGRFAM: FkbH like protein; HAD-superfamily phosphatase, subfamily IIIC; KEGG: nmu:Nmul_A2515 FkbH domain-containing protein.


ensembl_gene_id: Amir_3190
symbol: Amir_3190
gene_biotype: protein_coding
description:
  Transcriptional regulator, putative ATPase, winged helix family; PFAM: transcriptional activator domain; transcriptional regulator domain protein; KEGG: sme:SMa0464 adenylate/guanylate cyclase.


ensembl_gene_id: Amir_3195
symbol: aroQ
gene_biotype: protein_coding
description:
  3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.


ensembl_gene_id: Amir_3196
symbol: Amir_3196
gene_biotype: protein_coding
description:
  Glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: rpb:RPB_2068 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: Amir_3197
symbol: Amir_3197
gene_biotype: protein_coding
description:
  PFAM: Acyl transferase; AMP-dependent synthetase and ligase; Beta-ketoacyl synthase; Alcohol dehydrogenase GroES domain protein; short-chain dehydrogenase/reductase SDR; KR domain protein; Alcohol dehydrogenase zinc-binding domain protein; phosphopantetheine-binding; KEGG: met:M446_0172 beta-ketoacyl synthase.


ensembl_gene_id: Amir_3198
symbol: Amir_3198
gene_biotype: protein_coding
description:
  PFAM: Acyl transferase; short-chain dehydrogenase/reductase SDR; Beta-ketoacyl synthase; KR domain protein; phosphopantetheine-binding; KEGG: mxa:MXAN_4527 polyketide synthase.


ensembl_gene_id: Amir_3199
symbol: Amir_3199
gene_biotype: protein_coding
description:
  PFAM: UDP-glucuronosyl/UDP-glucosyltransferase; KEGG: cak:Caul_2842 glycosyl transferase family protein.


ensembl_gene_id: Amir_3200
symbol: Amir_3200
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ank:AnaeK_2751 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Amir_3208
symbol: Amir_3208
gene_biotype: protein_coding
description:
  Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: psa:PST_0620 hypothetical protein.


ensembl_gene_id: Amir_3212
symbol: Amir_3212
gene_biotype: protein_coding
description:
  PFAM: intradiol ring-cleavage dioxygenase; KEGG: noc:Noc_1128 protocatechuate 3 4-dioxygenase beta subunit like protein.


ensembl_gene_id: Amir_3213
symbol: Amir_3213
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 43; Carbohydrate binding family 6; SMART: cellulose binding type IV; KEGG: hypothetical protein; Belongs to the glycosyl hydrolase 43 family.


ensembl_gene_id: Amir_3215
symbol: Amir_3215
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 6; cellulose- binding family II; SMART: cellulose-binding family II; KEGG: mxa:MXAN_4837 endoglucanase; Belongs to the glycosyl hydrolase family 6.


ensembl_gene_id: Amir_3216
symbol: Amir_3216
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 5; Fibronectin type III domain protein; cellulose-binding family II; SMART: cellulose-binding family II; Fibronectin type III domain protein; KEGG: azc:AZC_1301 endoglucanase.


ensembl_gene_id: Amir_3219
symbol: Amir_3219
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; Bacterio-opsin activator HTH domain protein; SMART: response regulator receiver; regulatory protein LuxR; KEGG: scl:sce5431 two-component system response regulator.


ensembl_gene_id: Amir_3222
symbol: Amir_3222
gene_biotype: protein_coding
description:
  PFAM: cellulose-binding family II; Spore coat protein CotH; SMART: cellulose-binding family II; KEGG: scl:sce0771 hypothetical protein.


ensembl_gene_id: Amir_3225
symbol: Amir_3225
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bpy:Bphyt_6660 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Amir_3228
symbol: Amir_3228
gene_biotype: protein_coding
description:
  PFAM: Osmosensitive K channel His kinase sensor; ATP-binding region ATPase domain protein; UspA domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mno:Mnod_0197 osmosensitive K+ channel signal transduction histidine kinase.


ensembl_gene_id: Amir_3229
symbol: Amir_3229
gene_biotype: protein_coding
description:
  Potassium-transporting ATPase; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP-binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB/KdpC/ATP ternary complex.


ensembl_gene_id: Amir_3230
symbol: kdpB
gene_biotype: protein_coding
description:
  K+-transporting ATPase, B subunit; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system. Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IA subfamily.


ensembl_gene_id: Amir_3231
symbol: kdpA
gene_biotype: protein_coding
description:
  Potassium-transporting ATPase, A subunit; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane.


ensembl_gene_id: Amir_3234
symbol: lysA
gene_biotype: protein_coding
description:
  Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.


ensembl_gene_id: Amir_3236
symbol: Amir_3236
gene_biotype: protein_coding
description:
  Putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: ade:Adeh_0021 periplasmic sensor signal transduction histidine kinase.


ensembl_gene_id: Amir_3237
symbol: Amir_3237
gene_biotype: protein_coding
description:
  Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sfu:Sfum_4033 anti-sigma-factor antagonist.


ensembl_gene_id: Amir_3244
symbol: Amir_3244
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 25; Peptidoglycan- binding LysM; SMART: Peptidoglycan-binding LysM; glycoside hydrolase family 25; KEGG: mxa:MXAN_7387 chitinase, class I.


ensembl_gene_id: Amir_3265
symbol: Amir_3265
gene_biotype: protein_coding
description:
  TIGRFAM: phage terminase, small subunit, P27 family; PFAM: terminase small subunit putative P27; KEGG: rsh:Rsph17029_0646 P27 family phage terminase small subunit.


ensembl_gene_id: Amir_3274
symbol: Amir_3274
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Cyclopropane-fatty- acyl-phospholipid synthase; UbiE/COQ5 methyltransferase; Methyltransferase type 12; KEGG: hypothetical protein.


ensembl_gene_id: Amir_3275
symbol: Amir_3275
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; UbiE/COQ5 methyltransferase; Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 12; KEGG: hypothetical protein.


ensembl_gene_id: Amir_3279
symbol: Amir_3279
gene_biotype: protein_coding
description:
  PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: aba:Acid345_4328 3-hydroxyacyl-CoA dehydrogenase.


ensembl_gene_id: Amir_3287
symbol: Amir_3287
gene_biotype: protein_coding
description:
  Glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: rpb:RPB_2068 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: Amir_3288
symbol: Amir_3288
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase domain protein; Semialdehyde dehydrogenase NAD - binding; KEGG: rpb:RPB_2066 oxidoreductase-like.


ensembl_gene_id: Amir_3289
symbol: Amir_3289
gene_biotype: protein_coding
description:
  TIGRFAM: AHBA synthesis associated protein; HAD- superfamily hydrolase, subfamily IA, variant 3; HAD- superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rpb:RPB_2065 HAD-superfamily hydrolase.


ensembl_gene_id: Amir_3292
symbol: Amir_3292
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; phosphopantetheine-binding; KEGG: met:M446_0172 beta-ketoacyl synthase.


ensembl_gene_id: Amir_3294
symbol: Amir_3294
gene_biotype: protein_coding
description:
  PFAM: Acyl transferase; AMP-dependent synthetase and ligase; Beta-ketoacyl synthase; Alcohol dehydrogenase GroES domain protein; short-chain dehydrogenase/reductase SDR; KR domain protein; Alcohol dehydrogenase zinc-binding domain protein; NAD-dependent epimerase/dehydratase; phosphopantetheine-binding; KEGG: pst:PSPTO_4686 coronafacic acid polyketide synthase I.


ensembl_gene_id: Amir_3297
symbol: Amir_3297
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Tetratricopeptide TPR_4; SMART: regulatory protein LuxR; KEGG: vei:Veis_2932 regulatory protein, LuxR.


ensembl_gene_id: Amir_3301
symbol: Amir_3301
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 62; cellulose- binding family II; SMART: cellulose-binding family II; KEGG: glycosyl hydrolase family 62 protein.


ensembl_gene_id: Amir_3302
symbol: Amir_3302
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 43; KEGG: xylosidase/glycosyl hydrolase, putative; Belongs to the glycosyl hydrolase 43 family.


ensembl_gene_id: Amir_3303
symbol: Amir_3303
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 62; cellulose- binding family II; SMART: cellulose-binding family II; KEGG: hypothetical protein.


ensembl_gene_id: Amir_3304
symbol: Amir_3304
gene_biotype: protein_coding
description:
  PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: bur:Bcep18194_B2373 LacI family transcription regulator.


ensembl_gene_id: Amir_3308
symbol: Amir_3308
gene_biotype: protein_coding
description:
  Transcriptional regulator, winged helix family; PFAM: transcriptional activator domain; transcriptional regulator domain protein; KEGG: scl:sce5225 protein kinase.


ensembl_gene_id: Amir_3311
symbol: Amir_3311
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: short-chain oxidoreductase protein.


ensembl_gene_id: Amir_3313
symbol: Amir_3313
gene_biotype: protein_coding
description:
  PFAM: bifunctional deaminase-reductase domain protein; KEGG: mes:Meso_4307 bifunctional deaminase- reductase-like.


ensembl_gene_id: Amir_3321
symbol: Amir_3321
gene_biotype: protein_coding
description:
  PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: dde:Dde_0483 ATPase.


ensembl_gene_id: Amir_3324
symbol: Amir_3324
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; KEGG: scl:sce6114 hypothetical protein.


ensembl_gene_id: Amir_3325
symbol: Amir_3325
gene_biotype: protein_coding
description:
  PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: sus:Acid_0469 peptidase S9B dipeptidylpeptidase IV subunit.


ensembl_gene_id: Amir_3326
symbol: Amir_3326
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: aeh:Mlg_1632 AraC family transcriptional regulator.


ensembl_gene_id: Amir_3331
symbol: Amir_3331
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pfl:PFL_2250 transcriptional activator FtrA.


ensembl_gene_id: Amir_3332
symbol: Amir_3332
gene_biotype: protein_coding
description:
  Cyclic nucleotide-binding protein; PFAM: Cupin 2 conserved barrel domain protein; KEGG: bja:blr5564 hypothetical protein.


ensembl_gene_id: Amir_3334
symbol: Amir_3334
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bid:Bind_0032 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Amir_3335
symbol: Amir_3335
gene_biotype: protein_coding
description:
  Cellulase; PFAM: glycoside hydrolase family 5; protein of unknown function DUF291; KEGG: bha:BH0603 endo-beta-1,4-glucanase (celulase B); Belongs to the glycosyl hydrolase 5 (cellulase A) family.


ensembl_gene_id: Amir_3339
symbol: Amir_3339
gene_biotype: protein_coding
description:
  PFAM: NmrA family protein; NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: scl:sce8968 nucleotide-diphosphate-sugar epimerase.


ensembl_gene_id: Amir_3350
symbol: Amir_3350
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; NAD- dependent epimerase/dehydratase; KEGG: rso:RS05496 putative oxidoreductase protein.


ensembl_gene_id: Amir_3352
symbol: Amir_3352
gene_biotype: protein_coding
description:
  PFAM: Carboxylesterase type B; KEGG: swi:Swit_1148 carboxylesterase, type B; Belongs to the type-B carboxylesterase/lipase family.


ensembl_gene_id: Amir_3359
symbol: Amir_3359
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: bid:Bind_1144 alcohol dehydrogenase.


ensembl_gene_id: Amir_3366
symbol: Amir_3366
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bur:Bcep18194_C7080 AraC family transcriptional regulator.


ensembl_gene_id: Amir_3368
symbol: Amir_3368
gene_biotype: protein_coding
description:
  Phosphoketolase; PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: mno:Mnod_8717 D-xylulose 5-phosphate/D- fructose 6-phosphate phosphoketolase.


ensembl_gene_id: Amir_3376
symbol: Amir_3376
gene_biotype: protein_coding
description:
  PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding; KEGG: scl:sce2120 pyruvate decarboxylase; Belongs to the TPP enzyme family.


ensembl_gene_id: Amir_3377
symbol: Amir_3377
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: noc:Noc_0592 zinc-containing alcohol dehydrogenase superfamily protein.


ensembl_gene_id: Amir_3378
symbol: Amir_3378
gene_biotype: protein_coding
description:
  PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: spe:Spro_1223 glycoside hydrolase family protein.


ensembl_gene_id: Amir_3382
symbol: Amir_3382
gene_biotype: protein_coding
description:
  Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; SMART: regulatory protein LacI; KEGG: atc:AGR_L_1215 hypothetical protein.


ensembl_gene_id: Amir_3384
symbol: Amir_3384
gene_biotype: protein_coding
description:
  PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: scl:sce2622 N-methylhydantoinase A, beta subunit.


ensembl_gene_id: Amir_3386
symbol: Amir_3386
gene_biotype: protein_coding
description:
  PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; Citrate transporter; KEGG: azc:AZC_1182 H+/citrate symporter.


ensembl_gene_id: Amir_3388
symbol: Amir_3388
gene_biotype: protein_coding
description:
  PFAM: NAD(P)H dehydrogenase (quinone); NADPH- dependent FMN reductase; KEGG: aav:Aave_3540 NAD(P)H dehydrogenase (quinone).


ensembl_gene_id: Amir_3394
symbol: Amir_3394
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472; KEGG: acp:A2cp1_1693 protein of unknown function DUF470.


ensembl_gene_id: Amir_3399
symbol: Amir_3399
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bcy:Bcer98_1077 regulatory protein GntR HTH.


ensembl_gene_id: Amir_3400
symbol: Amir_3400
gene_biotype: protein_coding
description:
  Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: mxa:MXAN_2794 transcriptional regulator, TetR family.


ensembl_gene_id: Amir_3403
symbol: rbpA
gene_biotype: protein_coding
description:
  Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.


ensembl_gene_id: Amir_3407
symbol: Amir_3407
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein; KEGG: scl:sce6511 putative transcriptional regulator.


ensembl_gene_id: Amir_3409
symbol: Amir_3409
gene_biotype: protein_coding
description:
  PFAM: transcriptional regulator PadR family protein; KEGG: sus:Acid_0652 PadR family transcriptional regulator.


ensembl_gene_id: Amir_3411
symbol: Amir_3411
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: pca:Pcar_1854 major facilitator superfamily permease/BtlA-like.


ensembl_gene_id: Amir_3412
symbol: Amir_3412
gene_biotype: protein_coding
description:
  PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: rce:RC1_2887 glycerophosphoryl diester phosphodiesterase, putative.


ensembl_gene_id: Amir_3414
symbol: Amir_3414
gene_biotype: protein_coding
description:
  Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: tbd:Tbd_2428 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein.


ensembl_gene_id: Amir_3417
symbol: ku
gene_biotype: protein_coding
description:
  Ku domain containing protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.


ensembl_gene_id: Amir_3423
symbol: Amir_3423
gene_biotype: protein_coding
description:
  Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: hha:Hhal_1112 regulatory protein, ArsR.


ensembl_gene_id: Amir_3424
symbol: Amir_3424
gene_biotype: protein_coding
description:
  TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: arsenical-resistance protein precursor; K03325 arsenite transporter, ACR3 family.


ensembl_gene_id: Amir_3425
symbol: Amir_3425
gene_biotype: protein_coding
description:
  PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: arsenate reductase ArsC; K03741 arsenate reductase.


ensembl_gene_id: Amir_3437
symbol: Amir_3437
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: azc:AZC_4194 dehydrogenases.


ensembl_gene_id: Amir_3438
symbol: map
gene_biotype: protein_coding
description:
  Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.


ensembl_gene_id: Amir_3439
symbol: Amir_3439
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: mxa:MXAN_2709 putative transcriptional regulator.


ensembl_gene_id: Amir_3440
symbol: Amir_3440
gene_biotype: protein_coding
description:
  PFAM: Helix-turn-helix type 11 domain protein; regulatory protein DeoR; protein of unknown function UPF0074; SMART: regulatory protein DeoR; KEGG: scl:sce5223 DeoR family transcriptional regulator.


ensembl_gene_id: Amir_3441
symbol: Amir_3441
gene_biotype: protein_coding
description:
  PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: bbt:BBta_2587 putative monoxygenase.


ensembl_gene_id: Amir_3442
symbol: Amir_3442
gene_biotype: protein_coding
description:
  Transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; KEGG: kpe:KPK_3034 transcriptional regulator, DeoR family.


ensembl_gene_id: Amir_3445
symbol: Amir_3445
gene_biotype: protein_coding
description:
  PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: scl:sce7572 DNA polymerase III, epsilon subunit.


ensembl_gene_id: Amir_3447
symbol: Amir_3447
gene_biotype: protein_coding
description:
  PFAM: integrase family protein; KEGG: mag:amb4250 site-specific tyrosine recombinase XerC; Belongs to the 'phage' integrase family.


ensembl_gene_id: Amir_3448
symbol: Amir_3448
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: scl:sce1871 AraC family transcriptional regulator.


ensembl_gene_id: Amir_3453
symbol: Amir_3453
gene_biotype: protein_coding
description:
  PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: msl:Msil_1579 peptidase S9 prolyl oligopeptidase active site domain protein.


ensembl_gene_id: Amir_3454
symbol: Amir_3454
gene_biotype: protein_coding
description:
  PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: dal:Dalk_3806 peptidase U61 LD- carboxypeptidase A.


ensembl_gene_id: Amir_3459
symbol: Amir_3459
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: hypothetical protein.


ensembl_gene_id: Amir_3461
symbol: Amir_3461
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN3343 acyl-CoA dehydrogenase.


ensembl_gene_id: Amir_3463
symbol: Amir_3463
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: cti:RALTA_B1385 dipeptide ABC transporter atp_binding domain; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Amir_3464
symbol: Amir_3464
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr6084 ABC transporter, permease.


ensembl_gene_id: Amir_3465
symbol: Amir_3465
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr6083 ABC transporter, permease.


ensembl_gene_id: Amir_3466
symbol: Amir_3466
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: mlo:mlr6082 ABC transporter, binding protein component.


ensembl_gene_id: Amir_3470
symbol: Amir_3470
gene_biotype: protein_coding
description:
  KEGG: sml:Smlt2568 putative LacI-family transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI.


ensembl_gene_id: Amir_3472
symbol: Amir_3472
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: bur:Bcep18194_C6933 ABC sugar transporter, periplasmic ligand binding protein.


ensembl_gene_id: Amir_3473
symbol: Amir_3473
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bur:Bcep18194_C6934 ABC sugar transporter, inner membrane subunit.


ensembl_gene_id: Amir_3474
symbol: Amir_3474
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bur:Bcep18194_C6935 ABC sugar transporter, inner membrane subunit.


ensembl_gene_id: Amir_3475
symbol: Amir_3475
gene_biotype: protein_coding
description:
  PFAM: integrase family protein; KEGG: gme:Gmet_1427 tyrosine recombinase XerD subunit; Belongs to the 'phage' integrase family.


ensembl_gene_id: Amir_3477
symbol: Amir_3477
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: scl:sce3873 WD repeat-containing protein.


ensembl_gene_id: Amir_3486
symbol: Amir_3486
gene_biotype: protein_coding
description:
  PFAM: Helix-turn-helix type 11 domain protein; KEGG: scl:sce5223 DeoR family transcriptional regulator.


ensembl_gene_id: Amir_3489
symbol: Amir_3489
gene_biotype: protein_coding
description:
  Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: gdi:GDI2777 putative transcription regulator.


ensembl_gene_id: Amir_3490
symbol: Amir_3490
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bid:Bind_1477 alcohol dehydrogenase.


ensembl_gene_id: Amir_3495
symbol: Amir_3495
gene_biotype: protein_coding
description:
  PFAM: cellulose-binding family II; lipolytic protein G-D-S-L family; SMART: cellulose-binding family II; KEGG: ccs:CCNA_02538 endoglucanase E.


ensembl_gene_id: Amir_3496
symbol: Amir_3496
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: hha:Hhal_0914 putative transcriptional regulator, MerR family.


ensembl_gene_id: Amir_3497
symbol: Amir_3497
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: bcj:BCAM0093 MerR family regulatory protein.


ensembl_gene_id: Amir_3501
symbol: Amir_3501
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: scl:sce2734 ubiquinone/menaquinone biosynthesis methyltransferase UbiE.


ensembl_gene_id: Amir_3503
symbol: Amir_3503
gene_biotype: protein_coding
description:
  PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: scl:sce2276 hypothetical protein.


ensembl_gene_id: Amir_3504
symbol: Amir_3504
gene_biotype: protein_coding
description:
  PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: scl:sce4973 putative monooxygenase.


ensembl_gene_id: Amir_3506
symbol: cpdA
gene_biotype: protein_coding
description:
  Metallophosphoesterase; Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes.


