# geneInfo

ensembl_gene_id: Amir_3508
symbol: Amir_3508
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: bcy:Bcer98_0541 extracellular solute-binding protein.


ensembl_gene_id: Amir_3509
symbol: Amir_3509
gene_biotype: protein_coding
description:
  PFAM: tyrosine protein kinase; SMART: serine/threonine protein kinase; KEGG: scl:sce1432 protein kinase.


ensembl_gene_id: Amir_3510
symbol: Amir_3510
gene_biotype: protein_coding
description:
  PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: xau:Xaut_0996 protein phosphatase 2C-like protein.


ensembl_gene_id: Amir_3511
symbol: Amir_3511
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: cti:RALTA_A0035 putative transcriptional regulator, MarR family.


ensembl_gene_id: Amir_3517
symbol: Amir_3517
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: mpt:Mpe_A3662 AraC family transcriptional regulator.


ensembl_gene_id: Amir_3518
symbol: Amir_3518
gene_biotype: protein_coding
description:
  KEGG: ses:SARI_01345 ATP-dependent RNA helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase-associated domain protein; protein of unknown function DUF1605; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; AAA ATPase.


ensembl_gene_id: Amir_3522
symbol: uppP
gene_biotype: protein_coding
description:
  Undecaprenol kinase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.


ensembl_gene_id: Amir_3523
symbol: Amir_3523
gene_biotype: protein_coding
description:
  PFAM: Luciferase-like monooxygenase; KEGG: pzu:PHZ_c2543 5,10- methylenetetrahydromethanopterin reductase.


ensembl_gene_id: Amir_3530
symbol: Amir_3530
gene_biotype: protein_coding
description:
  Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: scl:sce6697 putative transcriptional regulator.


ensembl_gene_id: Amir_3532
symbol: Amir_3532
gene_biotype: protein_coding
description:
  PFAM: FAD-binding 9 siderophore-interacting domain protein; Siderophore-interacting protein; KEGG: mxa:MXAN_3639 iron-chelator utilization protein.


ensembl_gene_id: Amir_3533
symbol: Amir_3533
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; Tetratricopeptide TPR_4; SMART: regulatory protein LuxR; KEGG: SNF2 superfamily protein.


ensembl_gene_id: Amir_3534
symbol: Amir_3534
gene_biotype: protein_coding
description:
  PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: lch:Lcho_2886 IclR family transcriptional regulator.


ensembl_gene_id: Amir_3538
symbol: Amir_3538
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: bsu:BSU27440 glutamine ABC transporter (glutamine-binding protein); Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: Amir_3541
symbol: Amir_3541
gene_biotype: protein_coding
description:
  PFAM: alanine dehydrogenase/PNT domain protein; KEGG: sil:SPO3307 saccharopine dehydrogenase, putative.


ensembl_gene_id: Amir_3542
symbol: Amir_3542
gene_biotype: protein_coding
description:
  PFAM: Saccharopine dehydrogenase; 6- phosphogluconate dehydrogenase NAD-binding; KEGG: sit:TM1040_0106 saccharopine dehydrogenase (NADP+, L-glutamate forming).


ensembl_gene_id: Amir_3545
symbol: Amir_3545
gene_biotype: protein_coding
description:
  PFAM: Uracil-DNA glycosylase superfamily; KEGG: met:M446_1657 uracil-DNA glycosylase superfamily protein.


ensembl_gene_id: Amir_3550
symbol: Amir_3550
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 25; SMART: glycoside hydrolase family 25; KEGG: hypothetical protein.


ensembl_gene_id: Amir_3558
symbol: Amir_3558
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: xau:Xaut_0976 ECF subfamily RNA polymerase sigma-24 factor.


ensembl_gene_id: Amir_3559
symbol: Amir_3559
gene_biotype: protein_coding
description:
  TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: bha:BH3670 attenuator for lytABC and LytR expression.


ensembl_gene_id: Amir_3561
symbol: Amir_3561
gene_biotype: protein_coding
description:
  PFAM: Luciferase-like monooxygenase; KEGG: alkanal monooxygenase (bacterial liciferase alpha chain) like protein.


ensembl_gene_id: Amir_3567
symbol: Amir_3567
gene_biotype: protein_coding
description:
  PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: bur:Bcep18194_B0145 esterase/lipase/thioesterase.


ensembl_gene_id: Amir_3569
symbol: Amir_3569
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 43; Glycosyl hydrolase family 32 domain protein; KEGG: pzu:PHZ_c2480 xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family.


ensembl_gene_id: Amir_3571
symbol: Amir_3571
gene_biotype: protein_coding
description:
  Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; Tetratricopeptide TPR_4; NB-ARC domain protein; transcriptional regulator domain protein; SMART: Tetratricopeptide domain protein; KEGG: scl:sce6858 hypothetical protein.


ensembl_gene_id: Amir_3573
symbol: Amir_3573
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: afw:Anae109_0915 two component LuxR family transcriptional regulator.


ensembl_gene_id: Amir_3574
symbol: Amir_3574
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: ank:AnaeK_0902 two component transcriptional regulator, LuxR family.


ensembl_gene_id: Amir_3577
symbol: Amir_3577
gene_biotype: protein_coding
description:
  TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; phosphopantetheine-binding; condensation domain protein; KEGG: mxa:MXAN_3618 non-ribosomal peptide synthetase.


ensembl_gene_id: Amir_3578
symbol: Amir_3578
gene_biotype: protein_coding
description:
  TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: mxa:MXAN_3636 non-ribosomal peptide synthetase.


ensembl_gene_id: Amir_3581
symbol: Amir_3581
gene_biotype: protein_coding
description:
  TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; KEGG: bbt:BBta_1089 putative non-ribosomal peptide synthase; Belongs to the ATP-dependent AMP-binding enzyme family.


ensembl_gene_id: Amir_3582
symbol: Amir_3582
gene_biotype: protein_coding
description:
  PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: aav:Aave_3217 pyridoxal-5'-phosphate- dependent enzyme, beta subunit.


ensembl_gene_id: Amir_3589
symbol: cbiM
gene_biotype: protein_coding
description:
  Cobalamin biosynthesis protein CbiM; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import.


ensembl_gene_id: Amir_3590
symbol: cbiN
gene_biotype: protein_coding
description:
  Cobalt transport protein CbiN; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import; Belongs to the CbiN family.


ensembl_gene_id: Amir_3591
symbol: Amir_3591
gene_biotype: protein_coding
description:
  TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: mag:amb0277 ABC-type cobalt transport system.


ensembl_gene_id: Amir_3592
symbol: Amir_3592
gene_biotype: protein_coding
description:
  Cobalt ABC transporter, ATPase subunit; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.


ensembl_gene_id: Amir_3594
symbol: Amir_3594
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: azc:AZC_1457 transcriptional regulator.


ensembl_gene_id: Amir_3602
symbol: Amir_3602
gene_biotype: protein_coding
description:
  Cyclic nucleotide-binding protein; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Methyltransferase type 11; Methyltransferase type 12; Thioesterase; phosphopantetheine-binding; condensation domain protein; KEGG: smd:Smed_6472 amino acid adenylation domain.


ensembl_gene_id: Amir_3606
symbol: Amir_3606
gene_biotype: protein_coding
description:
  PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sfu:Sfum_2453 serine phosphatase.


ensembl_gene_id: Amir_3612
symbol: Amir_3612
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shl:Shal_1616 lipoprotein releasing system, ATP-binding protein.


ensembl_gene_id: Amir_3613
symbol: Amir_3613
gene_biotype: protein_coding
description:
  PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; KEGG: mxa:MXAN_5165 GMC oxidoreductase family protein.


ensembl_gene_id: Amir_3615
symbol: Amir_3615
gene_biotype: protein_coding
description:
  PFAM: aminotransferase class-III; KEGG: esa:ESA_03492 putrescine--2-oxoglutarate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Amir_3619
symbol: Amir_3619
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF470; protein of unknown function DUF472; protein of unknown function DUF471; KEGG: bph:Bphy_6311 hypothetical protein.


ensembl_gene_id: Amir_3630
symbol: Amir_3630
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; UbiE/COQ5 methyltransferase; Methyltransferase type 12; KEGG: mmr:Mmar10_1955 methyltransferase type 11.


ensembl_gene_id: Amir_3645
symbol: Amir_3645
gene_biotype: protein_coding
description:
  PFAM: cell divisionFtsK/SpoIIIE; KEGG: pha:PSHAb0091 cell divisionFtsK/SpoIIIE domain-containing protein.


ensembl_gene_id: Amir_3651
symbol: Amir_3651
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: hypothetical protein.


ensembl_gene_id: Amir_3653
symbol: Amir_3653
gene_biotype: protein_coding
description:
  PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rru:Rru_A2021 endonuclease/exonuclease/phosphatase.


ensembl_gene_id: Amir_3664
symbol: Amir_3664
gene_biotype: protein_coding
description:
  TIGRFAM: crotonyl-CoA reductase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: dds:Ddes_1332 crotonyl-CoA reductase.


ensembl_gene_id: Amir_3665
symbol: Amir_3665
gene_biotype: protein_coding
description:
  Peptide-aspartate beta-dioxygenase; PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: similar to aspartyl/asparaginyl beta- hydroxylase.


ensembl_gene_id: Amir_3667
symbol: Amir_3667
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: pca:Pcar_1259 ATP-binding transport protein; multicopy suppressor of HtrB.


ensembl_gene_id: Amir_3668
symbol: Amir_3668
gene_biotype: protein_coding
description:
  Peptide-aspartate beta-dioxygenase; PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: hypothetical protein.


ensembl_gene_id: Amir_3669
symbol: hldE
gene_biotype: protein_coding
description:
  Cytidyltransferase-related domain protein; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: Amir_3671
symbol: Amir_3671
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 9; KEGG: rso:RSc0565 ADP-heptose--lipopolysaccharide heptosyltransferase II protein.


ensembl_gene_id: Amir_3674
symbol: Amir_3674
gene_biotype: protein_coding
description:
  PFAM: AMP-dependent synthetase and ligase; nitroreductase; phosphopantetheine-binding; KEGG: pen:PSEEN2716 non-ribosomal peptide synthetase.


ensembl_gene_id: Amir_3675
symbol: Amir_3675
gene_biotype: protein_coding
description:
  TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; Non-ribosomal peptide synthetase; condensation domain protein; KEGG: psb:Psyr_1792 amino acid adenylation.


ensembl_gene_id: Amir_3676
symbol: Amir_3676
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_3705 asparagine synthase, glutamine- hydrolyzing; TIGRFAM: asparagine synthase (glutamine- hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II.


ensembl_gene_id: Amir_3678
symbol: Amir_3678
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: aba:Acid345_0895 NAD-dependent epimerase/dehydratase.


ensembl_gene_id: Amir_3680
symbol: Amir_3680
gene_biotype: protein_coding
description:
  TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: mxa:MXAN_4414 non-ribosomal peptide synthase.


ensembl_gene_id: Amir_3681
symbol: Amir_3681
gene_biotype: protein_coding
description:
  TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: eca:ECA1487 non-ribosomal peptide synthetase.


ensembl_gene_id: Amir_3682
symbol: Amir_3682
gene_biotype: protein_coding
description:
  PFAM: KR domain protein; Beta-ketoacyl synthase; Acyl transferase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KEGG: mxa:MXAN_3631 polyketide synthase type I.


ensembl_gene_id: Amir_3683
symbol: Amir_3683
gene_biotype: protein_coding
description:
  TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: mxa:MXAN_3636 non-ribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.


ensembl_gene_id: Amir_3687
symbol: Amir_3687
gene_biotype: protein_coding
description:
  Transcriptional regulator, HxlR family; PFAM: helix-turn-helix HxlR type; KEGG: mlo:mlr2600 hypothetical protein.


ensembl_gene_id: Amir_3695
symbol: Amir_3695
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bpa:BPP2159 ABC transporter, ATP-binding protein.


ensembl_gene_id: Amir_3697
symbol: Amir_3697
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerization and phosphoacceptor region; KEGG: scl:sce5432 putative two-component system sensor kinase.


ensembl_gene_id: Amir_3700
symbol: Amir_3700
gene_biotype: protein_coding
description:
  Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: acp:A2cp1_1650 regulatory protein TetR.


ensembl_gene_id: Amir_3702
symbol: Amir_3702
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF112 transmembrane; KEGG: smd:Smed_0363 protein of unknown function DUF112 transmembrane.


ensembl_gene_id: Amir_3705
symbol: Amir_3705
gene_biotype: protein_coding
description:
  Signal transduction histidine kinase regulating citrate/malate metabolism; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: sfu:Sfum_3991 signal transduction histidine kinase regulating citrate/malate metabolism.


ensembl_gene_id: Amir_3706
symbol: Amir_3706
gene_biotype: protein_coding
description:
  Response regulator receiver and unknown domain protein; PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: vco:VC0395_A1209 response regulator.


ensembl_gene_id: Amir_3708
symbol: Amir_3708
gene_biotype: protein_coding
description:
  PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: rsq:Rsph17025_2978 alpha amylase, catalytic region.


ensembl_gene_id: Amir_3714
symbol: Amir_3714
gene_biotype: protein_coding
description:
  Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: baa:BA_3806 bacterial regulatory proteins, TetR family.


ensembl_gene_id: Amir_3716
symbol: Amir_3716
gene_biotype: protein_coding
description:
  Lysine 2,3-aminomutase; PFAM: Radical SAM domain protein; KEGG: mxa:MXAN_4699 putative L-lysine 2,3- aminomutase.


ensembl_gene_id: Amir_3718
symbol: Amir_3718
gene_biotype: protein_coding
description:
  PFAM: Mg2 transporter protein CorA family protein; KEGG: rle:pRL120701 putative transmembrane magnesium and cobalt transport protein.


ensembl_gene_id: Amir_3719
symbol: Amir_3719
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: lch:Lcho_0755 Crp/FNR family transcriptional regulator.


ensembl_gene_id: Amir_3728
symbol: Amir_3728
gene_biotype: protein_coding
description:
  PFAM: Dicarboxylate carrier MatC domain protein; Citrate transporter; KEGG: matC; dicarboxylate-carrier protein.


ensembl_gene_id: Amir_3729
symbol: Amir_3729
gene_biotype: protein_coding
description:
  PFAM: SAF domain protein; homoserine dehydrogenase NAD-binding; KEGG: rru:Rru_A3141 homoserine dehydrogenase, NAD- binding.


ensembl_gene_id: Amir_3730
symbol: Amir_3730
gene_biotype: protein_coding
description:
  PFAM: type III effector Hrp-dependent outers; KEGG: pde:Pden_3383 type III effector Hrp-dependent outers.


ensembl_gene_id: Amir_3732
symbol: Amir_3732
gene_biotype: protein_coding
description:
  Transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; KEGG: psp:PSPPH_4844 DeoR family transcriptional regulator.


ensembl_gene_id: Amir_3735
symbol: Amir_3735
gene_biotype: protein_coding
description:
  PFAM: sodium/calcium exchanger membrane region; KEGG: bph:Bphy_3245 sodium/calcium exchanger membrane region.


ensembl_gene_id: Amir_3736
symbol: Amir_3736
gene_biotype: protein_coding
description:
  Putative PAS/PAC sensor protein; KEGG: met:M446_3626 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; GAF domain protein; PAS fold-3 domain protein; Sulfate transporter/antisigma-factor antagonist STAS; PAS fold-4 domain protein; PAS fold domain protein; SMART: protein phosphatase 2C domain protein; PAC repeat-containing protein; GAF domain protein; PAS domain containing protein.


ensembl_gene_id: Amir_3737
symbol: Amir_3737
gene_biotype: protein_coding
description:
  PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: scl:sce3550 hypothetical protein.


ensembl_gene_id: Amir_3738
symbol: Amir_3738
gene_biotype: protein_coding
description:
  Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: mca:MCA1431 anti-anti-sigma factor family protein; Belongs to the anti-sigma-factor antagonist family.


ensembl_gene_id: Amir_3739
symbol: Amir_3739
gene_biotype: protein_coding
description:
  PFAM: Stage II sporulation E family protein; response regulator receiver; SMART: response regulator receiver; protein phosphatase 2C domain protein; KEGG: pfo:Pfl01_3138 multi-sensor hybrid histidine kinase.


ensembl_gene_id: Amir_3740
symbol: Amir_3740
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: afw:Anae109_0803 histidine kinase.


ensembl_gene_id: Amir_3741
symbol: Amir_3741
gene_biotype: protein_coding
description:
  Putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: Stage II sporulation E family protein; ATP- binding region ATPase domain protein; SMART: protein phosphatase 2C domain protein; KEGG: mch:Mchl_3342 putative anti-sigma regulatory factor, serine/threonine protein kinase.


ensembl_gene_id: Amir_3742
symbol: Amir_3742
gene_biotype: protein_coding
description:
  Putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: xca:xccb100_3165 putative sigma-B negative effector.


ensembl_gene_id: Amir_3743
symbol: Amir_3743
gene_biotype: protein_coding
description:
  PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dac:Daci_4410 anti-sigma-factor antagonist.


ensembl_gene_id: Amir_3744
symbol: Amir_3744
gene_biotype: protein_coding
description:
  PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: xac:XAC1269 positive regulator of sigma-B.


ensembl_gene_id: Amir_3746
symbol: Amir_3746
gene_biotype: protein_coding
description:
  PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: scl:sce0787 hypothetical protein.


ensembl_gene_id: Amir_3748
symbol: Amir_3748
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pag:PLES_32251 putative transcriptional regulator.


ensembl_gene_id: Amir_3750
symbol: Amir_3750
gene_biotype: protein_coding
description:
  Arabinan endo-1,5-alpha-L-arabinosidase; PFAM: glycoside hydrolase family 43; KEGG: hypothetical protein.


ensembl_gene_id: Amir_3754
symbol: Amir_3754
gene_biotype: protein_coding
description:
  PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: scl:sce5645 carbohydrate ABC transporter.


ensembl_gene_id: Amir_3756
symbol: Amir_3756
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: scl:sce5644 carbohydrate ABC transporter.


ensembl_gene_id: Amir_3757
symbol: Amir_3757
gene_biotype: protein_coding
description:
  Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: gdj:Gdia_1592 regulatory protein TetR.


ensembl_gene_id: Amir_3763
symbol: Amir_3763
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: esa:ESA_01491 hypothetical protein.


ensembl_gene_id: Amir_3766
symbol: Amir_3766
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: afw:Anae109_0119 protein kinase.


ensembl_gene_id: Amir_3767
symbol: Amir_3767
gene_biotype: protein_coding
description:
  TIGRFAM: mycothiol-dependent formaldehyde dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: dac:Daci_0183 alcohol dehydrogenase.


ensembl_gene_id: Amir_3771
symbol: Amir_3771
gene_biotype: protein_coding
description:
  PFAM: Pyridoxal-dependent decarboxylase; aminotransferase class V; KEGG: dal:Dalk_0154 pyridoxal-dependent decarboxylase.


ensembl_gene_id: Amir_3773
symbol: Amir_3773
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: bpd:BURPS668_A2325 major facilitator superfamily permease.


ensembl_gene_id: Amir_3779
symbol: Amir_3779
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3- methyltransferase; KEGG: xca:xccb100_3974 hypothetical protein.


ensembl_gene_id: Amir_3786
symbol: Amir_3786
gene_biotype: protein_coding
description:
  PFAM: FR47 domain protein; GCN5-related N- acetyltransferase; KEGG: swi:Swit_4396 GCN5-related N- acetyltransferase.


ensembl_gene_id: Amir_3794
symbol: purA
gene_biotype: protein_coding
description:
  Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.


ensembl_gene_id: Amir_3800
symbol: dxs-2
gene_biotype: protein_coding
description:
  Transketolase central region; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.


ensembl_gene_id: Amir_3804
symbol: Amir_3804
gene_biotype: protein_coding
description:
  TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: cvi:CV_3487 hypothetical protein.


ensembl_gene_id: Amir_3805
symbol: Amir_3805
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; globin; Oxidoreductase FAD-binding domain protein; KEGG: rso:RSc3398 flavohemoprotein (hemoglobin- like) transmembrane; Belongs to the globin family.


ensembl_gene_id: Amir_3806
symbol: Amir_3806
gene_biotype: protein_coding
description:
  Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: aav:Aave_2096 transcriptional regulator, ArsR family.


ensembl_gene_id: Amir_3811
symbol: Amir_3811
gene_biotype: protein_coding
description:
  PFAM: Squalene/phytoene synthase; KEGG: PSY; PSY (PHYTOENE SYNTHASE); geranylgeranyl- diphosphate geranylgeranyltransferase; K02291 phytoene synthase.


ensembl_gene_id: Amir_3814
symbol: Amir_3814
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; UbiE/COQ5 methyltransferase; Methyltransferase type 12; KEGG: mno:Mnod_7055 ubiquinone/menaquinone biosynthesis methyltransferase.


ensembl_gene_id: Amir_3817
symbol: Amir_3817
gene_biotype: protein_coding
description:
  Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: sme:SMc01715 hypothetical protein.


ensembl_gene_id: Amir_3825
symbol: Amir_3825
gene_biotype: protein_coding
description:
  PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: bur:Bcep18194_B0126 5-carboxymethyl-2- hydroxymuconate isomerase.


ensembl_gene_id: Amir_3828
symbol: Amir_3828
gene_biotype: protein_coding
description:
  PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: nmu:Nmul_A0969 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.


ensembl_gene_id: Amir_3833
symbol: Amir_3833
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: gur:Gura_3006 methyltransferase type 11.


ensembl_gene_id: Amir_3834
symbol: Amir_3834
gene_biotype: protein_coding
description:
  PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: Amir_3835
symbol: Amir_3835
gene_biotype: protein_coding
description:
  Glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: scl:sce7344 NDP-sugar aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: Amir_3837
symbol: Amir_3837
gene_biotype: protein_coding
description:
  PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_2233 xylose isomerase domain- containing protein.


ensembl_gene_id: Amir_3839
symbol: Amir_3839
gene_biotype: protein_coding
description:
  PFAM: Malate/L-lactate dehydrogenase; KEGG: bpt:Bpet2680 malate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.


ensembl_gene_id: Amir_3842
symbol: Amir_3842
gene_biotype: protein_coding
description:
  Putative signal transduction protein with EFhand domain; PFAM: Calcium-binding EF-hand-containing protein; SMART: Calcium-binding EF-hand-containing protein; KEGG: bbt:BBta_5331 calcium-binding domain- containing protein.


ensembl_gene_id: Amir_3843
symbol: Amir_3843
gene_biotype: protein_coding
description:
  TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: sus:Acid_4597 UDP-glucose 6-dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.


ensembl_gene_id: Amir_3845
symbol: Amir_3845
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mlo:mlr3236 oxidoreductase.


ensembl_gene_id: Amir_3847
symbol: Amir_3847
gene_biotype: protein_coding
description:
  PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: dsh:Dshi_2951 pyridoxal-5'-phosphate- dependent protein beta subunit.


ensembl_gene_id: Amir_3849
symbol: Amir_3849
gene_biotype: protein_coding
description:
  TIGRFAM: alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92; KEGG: cps:CPS_2650 alpha-1,2-mannosidase family protein.


ensembl_gene_id: Amir_3852
symbol: Amir_3852
gene_biotype: protein_coding
description:
  KEGG: rle:RL0999 putative two-component regulator sensor histidine kinase protein; TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein.


ensembl_gene_id: Amir_3857
symbol: lspA
gene_biotype: protein_coding
description:
  Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.


ensembl_gene_id: Amir_3859
symbol: Amir_3859
gene_biotype: protein_coding
description:
  Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; transcriptional regulator domain protein; KEGG: afw:Anae109_1735 SARP family transcriptional regulator.


ensembl_gene_id: Amir_3873
symbol: Amir_3873
gene_biotype: protein_coding
description:
  PFAM: integrase family protein; KEGG: afw:Anae109_4219 phage integrase family protein; Belongs to the 'phage' integrase family.


ensembl_gene_id: Amir_3880
symbol: Amir_3880
gene_biotype: protein_coding
description:
  Methyl-accepting chemotaxis sensory transducer; PFAM: protein of unknown function DUF312; KEGG: hso:HS_1058 large adhesin.


ensembl_gene_id: Amir_3883
symbol: Amir_3883
gene_biotype: protein_coding
description:
  PFAM: condensation domain protein; KEGG: bam:Bamb_1537 amino acid adenylation domain- containing protein.


ensembl_gene_id: Amir_3887
symbol: Amir_3887
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ank:AnaeK_2445 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Amir_3891
symbol: Amir_3891
gene_biotype: protein_coding
description:
  TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; phosphopantetheine-binding; condensation domain protein; KEGG: pen:PSEEN2717 non-ribosomal peptide synthetase.


ensembl_gene_id: Amir_3892
symbol: Amir_3892
gene_biotype: protein_coding
description:
  TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Beta- ketoacyl synthase; short-chain dehydrogenase/reductase SDR; condensation domain protein; KR domain protein; Thioesterase; phosphopantetheine-binding; KEGG: pen:PSEEN2718 polyketide synthase (terminal component).


ensembl_gene_id: Amir_3900
symbol: Amir_3900
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bma:BMAA0201 transcriptional regulator CatR.


ensembl_gene_id: Amir_3903
symbol: Amir_3903
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: rme:Rmet_4293 alcohol dehydrogenase, zinc- binding.


ensembl_gene_id: Amir_3904
symbol: Amir_3904
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bcj:BCAM0680 putative DNA-binding protein.


ensembl_gene_id: Amir_3907
symbol: Amir_3907
gene_biotype: protein_coding
description:
  Mannosyl-glycoproteinendo-beta-N-acetylglucosami nidase; PFAM: glycoside hydrolase family 18; KEGG: hypothetical protein; Belongs to the glycosyl hydrolase 18 family.


ensembl_gene_id: Amir_3911
symbol: Amir_3911
gene_biotype: protein_coding
description:
  PFAM: transport system permease protein; KEGG: pmy:Pmen_4564 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: Amir_3912
symbol: Amir_3912
gene_biotype: protein_coding
description:
  PFAM: periplasmic binding protein; KEGG: pen:PSEEN3067 Fe uptake ABC transporter, periplasmic binding protein.


ensembl_gene_id: Amir_3913
symbol: Amir_3913
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: pau:PA14_39660 hypothetical protein.


ensembl_gene_id: Amir_3926
symbol: Amir_3926
gene_biotype: protein_coding
description:
  Alpha-N-arabinofuranosidase; PFAM: glycoside hydrolase family 43; KEGG: cja:CJA_0819 alpha-L-arabinfuranosidase, putative, abf43M; Belongs to the glycosyl hydrolase 43 family.


ensembl_gene_id: Amir_3927
symbol: Amir_3927
gene_biotype: protein_coding
description:
  PFAM: Ricin B lectin; SMART: Ricin B lectin; KEGG: sde:Sde_3710 arabinogalactan endo-1,4-beta- galactosidase; Belongs to the glycosyl hydrolase 43 family.


ensembl_gene_id: Amir_3929
symbol: Amir_3929
gene_biotype: protein_coding
description:
  PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: mfa:Mfla_0439 aminomethyltransferase; Belongs to the GcvT family.


ensembl_gene_id: Amir_3934
symbol: Amir_3934
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: tbd:Tbd_2162 hypothetical protein.


ensembl_gene_id: Amir_3940
symbol: Amir_3940
gene_biotype: protein_coding
description:
  PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: afw:Anae109_0511 activator of HSP90 ATPase 1 family protein.


ensembl_gene_id: Amir_3941
symbol: Amir_3941
gene_biotype: protein_coding
description:
  Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: afw:Anae109_0512 regulatory protein ArsR.


ensembl_gene_id: Amir_3942
symbol: Amir_3942
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: ent:Ent638_3529 XRE family transcriptional regulator.


ensembl_gene_id: Amir_3944
symbol: Amir_3944
gene_biotype: protein_coding
description:
  Alpha-N-arabinofuranosidase; KEGG: sde:Sde_0791 alpha-L-arabinofuranosidase; PFAM: glycoside hydrolase family 43; Ricin B lectin; SMART: Ricin B lectin; Belongs to the glycosyl hydrolase 43 family.


ensembl_gene_id: Amir_3946
symbol: Amir_3946
gene_biotype: protein_coding
description:
  Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sus:Acid_5261 anti-sigma-factor antagonist.


ensembl_gene_id: Amir_3947
symbol: Amir_3947
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; KEGG: acp:A2cp1_0906 transcriptional regulator, LuxR family.


ensembl_gene_id: Amir_3948
symbol: Amir_3948
gene_biotype: protein_coding
description:
  TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bph:Bphy_3357 EmrB/QacA family drug resistance transporter.


ensembl_gene_id: Amir_3953
symbol: Amir_3953
gene_biotype: protein_coding
description:
  PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: azc:AZC_4213 anti-sigma factor antagonist.


ensembl_gene_id: Amir_3954
symbol: Amir_3954
gene_biotype: protein_coding
description:
  Multi-sensor signal transduction histidine kinase; KEGG: cti:RALTA_B0128 putative multi-site sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; response regulator receiver; PAS fold domain protein; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: response regulator receiver; protein phosphatase 2C domain protein; histidine kinase A domain protein; GAF domain protein; PAS domain containing protein; ATP-binding region ATPase domain protein.


ensembl_gene_id: Amir_3957
symbol: Amir_3957
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; cyclic nucleotide- binding; KEGG: swi:Swit_2706 Crp/FNR family transcriptional regulator.


ensembl_gene_id: Amir_3958
symbol: Amir_3958
gene_biotype: protein_coding
description:
  PFAM: Pectate lyase/Amb allergen; SMART: Pectate lyase/Amb allergen; KEGG: sde:Sde_0943 ribosomal protein S5.


ensembl_gene_id: Amir_3959
symbol: Amir_3959
gene_biotype: protein_coding
description:
  KEGG: acetyl xylan esterase; K01567; TIGRFAM: esterase, PHB depolymerase family; PFAM: cellulose-binding family II; SMART: cellulose-binding family II.


ensembl_gene_id: Amir_3962
symbol: Amir_3962
gene_biotype: protein_coding
description:
  PFAM: beta-lactamase; penicillin-binding protein transpeptidase; KEGG: bsu:BSU18800 beta-lactamase precursor.


ensembl_gene_id: Amir_3963
symbol: Amir_3963
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sml:Smlt2229 hypothetical protein.


ensembl_gene_id: Amir_3964
symbol: Amir_3964
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: sme:SMc00680 putative zinc-type alcohol dehydrogenase protein.


ensembl_gene_id: Amir_3971
symbol: Amir_3971
gene_biotype: protein_coding
description:
  PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone; KEGG: rso:RSc1218 lipoprotein transmembrane.


ensembl_gene_id: Amir_3973
symbol: Amir_3973
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: ABC-type dipeptide transport system, periplasmic component; K02035 peptide/nickel transport system substrate-binding protein.


ensembl_gene_id: Amir_3976
symbol: Amir_3976
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bpy:Bphyt_1098 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Amir_3978
symbol: Amir_3978
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: mxa:MXAN_2233 major facilitator family transporter.


ensembl_gene_id: Amir_3980
symbol: ribA
gene_biotype: protein_coding
description:
  GTP cyclohydrolase II; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family.


ensembl_gene_id: Amir_3981
symbol: Amir_3981
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: oan:Oant_4026 transcriptional regulator, MarR family.


ensembl_gene_id: Amir_3982
symbol: Amir_3982
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.


ensembl_gene_id: Amir_3984
symbol: Amir_3984
gene_biotype: protein_coding
description:
  PFAM: PBS lyase HEAT domain protein repeat- containing protein; HEAT domain containing protein; SMART: PBS lyase HEAT domain protein repeat- containing protein; KEGG: afw:Anae109_2123 heat repeat-containing PBS lyase.


ensembl_gene_id: Amir_3987
symbol: Amir_3987
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 12; KEGG: hypothetical protein; Belongs to the glycosyl hydrolase 12 (cellulase H) family.


ensembl_gene_id: Amir_3988
symbol: Amir_3988
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: psb:Psyr_0904 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Amir_3990
symbol: Amir_3990
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: atc:AGR_pAT_269 hypothetical protein.


ensembl_gene_id: Amir_3992
symbol: Amir_3992
gene_biotype: protein_coding
description:
  PFAM: NmrA family protein; dTDP-4-dehydrorhamnose reductase; KEGG: bpa:BPP3249 hypothetical protein.


ensembl_gene_id: Amir_4000
symbol: Amir_4000
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerization and phosphoacceptor region; SMART: ATP-binding region ATPase domain protein; KEGG: scl:sce5432 putative two-component system sensor kinase.


ensembl_gene_id: Amir_4003
symbol: Amir_4003
gene_biotype: protein_coding
description:
  Oleoyl-(acyl-carrier-protein) hydrolase; PFAM: Thioesterase; KEGG: pau:PA14_09230 pyochelin biosynthetic protein PchC.


ensembl_gene_id: Amir_4007
symbol: Amir_4007
gene_biotype: protein_coding
description:
  PFAM: Xylose isomerase domain protein TIM barrel; KEGG: smd:Smed_3334 xylose isomerase domain protein TIM barrel.


ensembl_gene_id: Amir_4009
symbol: Amir_4009
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: atc:AGR_L_3386 hypothetical protein.


ensembl_gene_id: Amir_4014
symbol: Amir_4014
gene_biotype: protein_coding
description:
  Putative two component transcriptional regulator, winged helix family; PFAM: transcriptional regulator domain protein; KEGG: bcb:BCB4264_A1351 DNA-binding response regulator.


ensembl_gene_id: Amir_4015
symbol: folD
gene_biotype: protein_coding
description:
  Methylenetetrahydrofolate dehydrogenase (NADP(+)); Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.


ensembl_gene_id: Amir_4016
symbol: Amir_4016
gene_biotype: protein_coding
description:
  KEGG: sus:Acid_5487 O-acetylhomoserine/O- acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase.


ensembl_gene_id: Amir_4017
symbol: Amir_4017
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbt:BBta_7223 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Amir_4019
symbol: Amir_4019
gene_biotype: protein_coding
description:
  PFAM: Acyl transferase; Beta-ketoacyl synthase; Alcohol dehydrogenase GroES domain protein; short-chain dehydrogenase/reductase SDR; KR domain protein; Alcohol dehydrogenase zinc-binding domain protein; phosphopantetheine-binding; KEGG: pst:PSPTO_4686 coronafacic acid polyketide synthase I.


ensembl_gene_id: Amir_4028
symbol: Amir_4028
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sus:Acid_7020 WD-40 repeat-containing serine/threonin protein kinase.


ensembl_gene_id: Amir_4031
symbol: Amir_4031
gene_biotype: protein_coding
description:
  Glucan endo-1,3-beta-D-glucosidase; KEGG: hypothetical protein; PFAM: Ricin B lectin; SMART: Ricin B lectin.


ensembl_gene_id: Amir_4033
symbol: Amir_4033
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: RCJMB04_10a6, FOXRED2; FAD-dependent oxidoreductase domain containing 2.


ensembl_gene_id: Amir_4036
symbol: Amir_4036
gene_biotype: protein_coding
description:
  PFAM: sodium/hydrogen exchanger; KEGG: pzu:PHZ_c2901 Kef-type K+ transport system, membrane component.


ensembl_gene_id: Amir_4038
symbol: Amir_4038
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: histidine kinase.


ensembl_gene_id: Amir_4042
symbol: Amir_4042
gene_biotype: protein_coding
description:
  PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: reu:Reut_B4643 mandelate racemase/muconate lactonizing protein.


ensembl_gene_id: Amir_4044
symbol: Amir_4044
gene_biotype: protein_coding
description:
  PFAM: Na-Ca exchanger/integrin-beta4; SMART: Na-Ca exchanger/integrin-beta4; KEGG: hch:HCH_05909 hypothetical protein.


ensembl_gene_id: Amir_4045
symbol: Amir_4045
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: rru:Rru_A2339 ABC transporter component.


ensembl_gene_id: Amir_4046
symbol: Amir_4046
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: rru:Rru_A2340 ABC transporter, transmembrane region.


ensembl_gene_id: Amir_4047
symbol: Amir_4047
gene_biotype: protein_coding
description:
  Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: mlo:mlr7883 transcription regulator.


ensembl_gene_id: Amir_4051
symbol: Amir_4051
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; Bacterio-opsin activator HTH domain protein; SMART: response regulator receiver; regulatory protein LuxR; KEGG: scl:sce5431 two-component system response regulator.


ensembl_gene_id: Amir_4052
symbol: Amir_4052
gene_biotype: protein_coding
description:
  PFAM: histidine kinase dimerization and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: mmr:Mmar10_2544 putative signal transduction histidine kinase.


ensembl_gene_id: Amir_4054
symbol: Amir_4054
gene_biotype: protein_coding
description:
  PFAM: Helix-turn-helix type 11 domain protein; protein of unknown function UPF0074; KEGG: afw:Anae109_3752 helix-turn-helix type 11 domain-containing protein.


ensembl_gene_id: Amir_4056
symbol: Amir_4056
gene_biotype: protein_coding
description:
  Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: bph:Bphy_6164 TetR family transcriptional regulator.


ensembl_gene_id: Amir_4068
symbol: Amir_4068
gene_biotype: protein_coding
description:
  KEGG: lch:Lcho_2475 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein.


ensembl_gene_id: Amir_4069
symbol: Amir_4069
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sus:Acid_5032 two component transcriptional regulator.


ensembl_gene_id: Amir_4070
symbol: Amir_4070
gene_biotype: protein_coding
description:
  PFAM: Peptidoglycan-binding domain 1 protein; KEGG: gur:Gura_3473 peptidoglycan binding domain- containing protein.


ensembl_gene_id: Amir_4071
symbol: Amir_4071
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vco:VC0395_A1173 ABC transporter, ATP-binding protein.


ensembl_gene_id: Amir_4075
symbol: Amir_4075
gene_biotype: protein_coding
description:
  TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: spe:Spro_3869 cysteine desulfurase family protein.


ensembl_gene_id: Amir_4076
symbol: Amir_4076
gene_biotype: protein_coding
description:
  PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: scl:sce3486 choline dehydrogenase.


ensembl_gene_id: Amir_4077
symbol: Amir_4077
gene_biotype: protein_coding
description:
  PFAM: O-methyltransferase family 2; Methyltransferase type 12; Methyltransferase type 11; KEGG: sfu:Sfum_0920 O-methyltransferase, family 2.


ensembl_gene_id: Amir_4080
symbol: Amir_4080
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KR domain protein; 3-beta hydroxysteroid dehydrogenase/isomerase; short-chain dehydrogenase/reductase SDR; KEGG: ade:Adeh_0777 NAD-dependent epimerase/dehydratase.


ensembl_gene_id: Amir_4081
symbol: Amir_4081
gene_biotype: protein_coding
description:
  PFAM: flavin reductase domain protein FMN-binding; KEGG: pde:Pden_2689 flavin reductase domain protein, FMN-binding.


ensembl_gene_id: Amir_4083
symbol: Amir_4083
gene_biotype: protein_coding
description:
  PFAM: Beta-ketoacyl synthase; Acyl transferase; KR domain protein; short-chain dehydrogenase/reductase SDR; KEGG: mca:MCA1238 polyketide synthase.


ensembl_gene_id: Amir_4087
symbol: Amir_4087
gene_biotype: protein_coding
description:
  Transcriptional regulator, HxlR family; PFAM: helix-turn-helix HxlR type; KEGG: sme:SMc02225 hypothetical protein.


ensembl_gene_id: Amir_4091
symbol: Amir_4091
gene_biotype: protein_coding
description:
  PFAM: Acyl-CoA dehydrogenase type 2 domain; acyl- CoA dehydrogenase domain protein; KEGG: bur:Bcep18194_B1567 acyl-CoA dehydrogenase- like.


ensembl_gene_id: Amir_4092
symbol: Amir_4092
gene_biotype: protein_coding
description:
  PFAM: Epoxide hydrolase domain protein; alpha/beta hydrolase fold; KEGG: bja:bll7368 putative hydrolase.


ensembl_gene_id: Amir_4093
symbol: Amir_4093
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: pmy:Pmen_1335 protein of unknown function DUF899, thioredoxin family protein.


ensembl_gene_id: Amir_4098
symbol: Amir_4098
gene_biotype: protein_coding
description:
  Uncharacterized peroxidase-related enzyme; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.


ensembl_gene_id: Amir_4099
symbol: Amir_4099
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: msl:Msil_2581 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Amir_4103
symbol: Amir_4103
gene_biotype: protein_coding
description:
  Hypothetical protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.


ensembl_gene_id: Amir_4104
symbol: Amir_4104
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bha:BH0851 AraC/XylS family transcriptional regulator.


ensembl_gene_id: Amir_4107
symbol: Amir_4107
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: swi:Swit_1657 alcohol dehydrogenase.


ensembl_gene_id: Amir_4113
symbol: Amir_4113
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpi:Rpic_1138 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Amir_4122
symbol: Amir_4122
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: azc:AZC_2089 hypothetical protein.


ensembl_gene_id: Amir_4123
symbol: Amir_4123
gene_biotype: protein_coding
description:
  PFAM: PEP-utilizing protein; KEGG: ccs:CCNA_00571 phosphoenolpyruvate-protein phosphotransferase/phosphocarrier protein HPr/PTS system, glucose-specific IIA subunit.


ensembl_gene_id: Amir_4125
symbol: Amir_4125
gene_biotype: protein_coding
description:
  PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: mxa:MXAN_1751 isoquinoline 1-oxidoreductase, alpha subunit.


ensembl_gene_id: Amir_4127
symbol: Amir_4127
gene_biotype: protein_coding
description:
  PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: scl:sce2990 hypothetical protein.


ensembl_gene_id: Amir_4128
symbol: Amir_4128
gene_biotype: protein_coding
description:
  PFAM: helicase domain protein; SNF2-related protein; type III restriction protein res subunit; SMART: helicase domain protein; DEAD-like helicase; KEGG: xau:Xaut_2988 helicase domain-containing protein.


ensembl_gene_id: Amir_4130
symbol: Amir_4130
gene_biotype: protein_coding
description:
  KEGG: scl:sce0662 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI.


ensembl_gene_id: Amir_4131
symbol: Amir_4131
gene_biotype: protein_coding
description:
  KEGG: scl:sce0661 Mannan endo-1,4-beta-mannosidase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.


ensembl_gene_id: Amir_4132
symbol: Amir_4132
gene_biotype: protein_coding
description:
  PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: ccs:CCNA_02903 starvation sensing protein RspA.


ensembl_gene_id: Amir_4134
symbol: Amir_4134
gene_biotype: protein_coding
description:
  PFAM: cellulose-binding family II; SMART: cellulose-binding family II; KEGG: scl:sce2212 putative topoisomerase.


ensembl_gene_id: Amir_4135
symbol: Amir_4135
gene_biotype: protein_coding
description:
  PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: met:M446_1000 hypothetical protein.


ensembl_gene_id: Amir_4136
symbol: Amir_4136
gene_biotype: protein_coding
description:
  PFAM: Calcium/calmodulin dependent protein kinase II association-domain protein; KEGG: pfl:PFL_3821 hypothetical protein.


ensembl_gene_id: Amir_4137
symbol: Amir_4137
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: ppu:PP_4505 integral membrane sensor signal transduction histidine kinase.


ensembl_gene_id: Amir_4138
symbol: Amir_4138
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bte:BTH_II1765 DNA-binding response regulator.


ensembl_gene_id: Amir_4148
symbol: Amir_4148
gene_biotype: protein_coding
description:
  PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: sml:Smlt0507 putative arylesterase (aryl- ester hydrolase).


ensembl_gene_id: Amir_4152
symbol: Amir_4152
gene_biotype: protein_coding
description:
  PFAM: cellulose-binding family II; glycoside hydrolase family 5; SMART: cellulose-binding family II; KEGG: sde:Sde_0064 putative secreted beta- mannosidase.


ensembl_gene_id: Amir_4158
symbol: msrA
gene_biotype: protein_coding
description:
  Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.


ensembl_gene_id: Amir_4160
symbol: Amir_4160
gene_biotype: protein_coding
description:
  PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rme:Rmet_4145 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.


ensembl_gene_id: Amir_4164
symbol: Amir_4164
gene_biotype: protein_coding
description:
  PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: cti:RALTA_B1947 putative transcriptional regulator, IclR family.


ensembl_gene_id: Amir_4165
symbol: Amir_4165
gene_biotype: protein_coding
description:
  PFAM: Dimethylmenaquinone methyltransferase; KEGG: mrd:Mrad2831_3497 dimethylmenaquinone methyltransferase.


ensembl_gene_id: Amir_4166
symbol: Amir_4166
gene_biotype: protein_coding
description:
  PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: ppf:Pput_1368 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.


ensembl_gene_id: Amir_4171
symbol: Amir_4171
gene_biotype: protein_coding
description:
  PFAM: Oligopeptide transporter OPT superfamily protein; KEGG: vei:Veis_1103 oligopeptide transporter OPT superfamily protein.


ensembl_gene_id: Amir_4172
symbol: Amir_4172
gene_biotype: protein_coding
description:
  PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: reu:Reut_B5545 regulatory protein, IclR.


ensembl_gene_id: Amir_4173
symbol: Amir_4173
gene_biotype: protein_coding
description:
  PFAM: peptidase S51 dipeptidase E; KEGG: AGAP000513-PA; K05995 dipeptidase E; Belongs to the peptidase S51 family.


ensembl_gene_id: Amir_4174
symbol: Amir_4174
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; cellulose-binding family II; SMART: serine/threonine protein kinase; cellulose- binding family II; tyrosine protein kinase; KEGG: acp:A2cp1_2229 serine/threonine protein kinase with TPR repeats.


ensembl_gene_id: Amir_4178
symbol: Amir_4178
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: msl:Msil_0872 alcohol dehydrogenase GroES domain protein.


ensembl_gene_id: Amir_4179
symbol: Amir_4179
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: abo:ABO_0014 MarR family transcriptional regulator.


ensembl_gene_id: Amir_4180
symbol: Amir_4180
gene_biotype: protein_coding
description:
  D-aspartate oxidase; PFAM: FAD dependent oxidoreductase; KEGG: similar to D-aspartate oxidase; K00272 D- aspartate oxidase.


ensembl_gene_id: Amir_4183
symbol: Amir_4183
gene_biotype: protein_coding
description:
  PFAM: Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: bcu:BCAH820_0093 putative DNA-binding protein.


ensembl_gene_id: Amir_4185
symbol: lnt
gene_biotype: protein_coding
description:
  Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.


ensembl_gene_id: Amir_4190
symbol: Amir_4190
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: scl:sce8843 MarR family transcriptional regulator.


ensembl_gene_id: Amir_4192
symbol: Amir_4192
gene_biotype: protein_coding
description:
  Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: hhe:HH0942 transcriptional regulator; Belongs to the Fur family.


ensembl_gene_id: Amir_4193
symbol: katG
gene_biotype: protein_coding
description:
  Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.


ensembl_gene_id: Amir_4194
symbol: Amir_4194
gene_biotype: protein_coding
description:
  PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: she:Shewmr4_1596 peptidase S8 and S53, subtilisin, kexin, sedolisin; Belongs to the peptidase S8 family.


ensembl_gene_id: Amir_4196
symbol: Amir_4196
gene_biotype: protein_coding
description:
  TIGRFAM: conserved repeat domain protein; PFAM: Cna B domain protein; KEGG: gme:Gmet_2043 hypothetical protein.


ensembl_gene_id: Amir_4198
symbol: Amir_4198
gene_biotype: protein_coding
description:
  Pectinesterase; KEGG: xca:xccb100_0130 exported pectinesterase; PFAM: Pectinesterase; Ricin B lectin; SMART: Ricin B lectin.


ensembl_gene_id: Amir_4199
symbol: Amir_4199
gene_biotype: protein_coding
description:
  PFAM: Ricin B lectin; Pectate lyase/Amb allergen; SMART: Ricin B lectin; Parallel beta-helix repeat; Pectate lyase/Amb allergen; KEGG: bha:BH0698 pectate lyase.


ensembl_gene_id: Amir_4201
symbol: Amir_4201
gene_biotype: protein_coding
description:
  KEGG: mrd:Mrad2831_1538 precorrin-6A synthase (deacetylating); TIGRFAM: precorrin-6A synthase (deacetylating); PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.


ensembl_gene_id: Amir_4203
symbol: Amir_4203
gene_biotype: protein_coding
description:
  PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: bsu:BSU10500 hypothetical protein.


ensembl_gene_id: Amir_4208
symbol: Amir_4208
gene_biotype: protein_coding
description:
  Methionine--tRNA ligase; PFAM: tRNA synthetase class I (M); Cupin 2 conserved barrel domain protein; KEGG: pen:PSEEN0982 methionine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: Amir_4211
symbol: Amir_4211
gene_biotype: protein_coding
description:
  PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: rso:RS03119 putative transmembrane protein.


ensembl_gene_id: Amir_4212
symbol: Amir_4212
gene_biotype: protein_coding
description:
  PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: rso:RS03114 hypothetical protein.


ensembl_gene_id: Amir_4215
symbol: Amir_4215
gene_biotype: protein_coding
description:
  TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; KEGG: rso:RS03108 hypothetical protein.


ensembl_gene_id: Amir_4218
symbol: Amir_4218
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: aha:AHA_4117 regulatory protein, LysR:LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Amir_4225
symbol: Amir_4225
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 5; KEGG: hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.


ensembl_gene_id: Amir_4227
symbol: Amir_4227
gene_biotype: protein_coding
description:
  Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: bcz:pE33L466_0439 transcriptional regulator.


ensembl_gene_id: Amir_4228
symbol: Amir_4228
gene_biotype: protein_coding
description:
  PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; KEGG: net:Neut_0352 sulphate transporter.


ensembl_gene_id: Amir_4236
symbol: Amir_4236
gene_biotype: protein_coding
description:
  KEGG: sus:Acid_0740 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.


ensembl_gene_id: Amir_4237
symbol: Amir_4237
gene_biotype: protein_coding
description:
  Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 11; KEGG: sde:Sde_3061 xylanase/chitin deacetylase-like; Belongs to the glycosyl hydrolase 11 (cellulase G) family.


ensembl_gene_id: Amir_4238
symbol: Amir_4238
gene_biotype: protein_coding
description:
  PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; carboxyl transferase; biotin/lipoyl attachment domain- containing protein; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: aba:Acid345_0466 carbamoyl-phosphate synthase L chain, ATP-binding.


ensembl_gene_id: Amir_4239
symbol: Amir_4239
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oan:Oant_2483 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Amir_4240
symbol: Amir_4240
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xfm:Xfasm12_1606 ABC transporter sugar permease.


ensembl_gene_id: Amir_4241
symbol: Amir_4241
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: sit:TM1040_3216 extracellular solute-binding protein.


ensembl_gene_id: Amir_4246
symbol: Amir_4246
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: aav:Aave_0303 transcriptional regulator, LysR family.


ensembl_gene_id: Amir_4247
symbol: Amir_4247
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Male sterility domain; NAD-dependent epimerase/dehydratase; KEGG: rpb:RPB_0526 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Amir_4273
symbol: Amir_4273
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: rpb:RPB_1659 MarR family transcriptional regulator.


ensembl_gene_id: Amir_4275
symbol: Amir_4275
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: afw:Anae109_3347 transcriptional activator domain-containing protein.


ensembl_gene_id: Amir_4277
symbol: Amir_4277
gene_biotype: protein_coding
description:
  PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pfl:PFL_0942 Oye family NADH-dependent flavin oxidoreductase.


ensembl_gene_id: Amir_4280
symbol: Amir_4280
gene_biotype: protein_coding
description:
  TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: scl:sce5396 hypothetical protein.


ensembl_gene_id: Amir_4282
symbol: Amir_4282
gene_biotype: protein_coding
description:
  Putative transcriptional regulator, PaaX family; KEGG: bha:BH0194 repressor in the phenylacetic acid catabolic pathway.


ensembl_gene_id: Amir_4283
symbol: Amir_4283
gene_biotype: protein_coding
description:
  Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: bsu:BSU19120 hypothetical protein.


ensembl_gene_id: Amir_4286
symbol: Amir_4286
gene_biotype: protein_coding
description:
  Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: dvm:DvMF_1207 transcriptional regulator, ArsR family.


ensembl_gene_id: Amir_4289
symbol: Amir_4289
gene_biotype: protein_coding
description:
  Dyp-type peroxidase family; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family.


ensembl_gene_id: Amir_4290
symbol: Amir_4290
gene_biotype: protein_coding
description:
  Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: mxa:MXAN_7319 putative transcriptional regulator.


ensembl_gene_id: Amir_4292
symbol: Amir_4292
gene_biotype: protein_coding
description:
  PFAM: Epoxide hydrolase domain protein; alpha/beta hydrolase fold; KEGG: bpy:Bphyt_5343 epoxide hydrolase domain protein.


ensembl_gene_id: Amir_4294
symbol: Amir_4294
gene_biotype: protein_coding
description:
  PFAM: transport system permease protein; KEGG: oan:Oant_2825 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: Amir_4295
symbol: Amir_4295
gene_biotype: protein_coding
description:
  PFAM: transport system permease protein; KEGG: oan:Oant_2826 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: Amir_4299
symbol: Amir_4299
gene_biotype: protein_coding
description:
  PFAM: ANTAR domain protein; KEGG: afw:Anae109_3912 multi-sensor signal transduction histidine kinase.


ensembl_gene_id: Amir_4300
symbol: Amir_4300
gene_biotype: protein_coding
description:
  PFAM: Orn/Lys/Arg decarboxylase domain protein; Orn/Lys/Arg decarboxylase major region; KEGG: bha:BH2640 lysine decarboxylase.


ensembl_gene_id: Amir_4301
symbol: Amir_4301
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: azo:azo0656 LuxR family transcriptional regulator.


ensembl_gene_id: Amir_4306
symbol: Amir_4306
gene_biotype: protein_coding
description:
  PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: scl:sce6912 thiosulfate sulfurtransferase.


ensembl_gene_id: Amir_4311
symbol: Amir_4311
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rpi:Rpic_3636 transcriptional regulator, LysR family.


ensembl_gene_id: Amir_4313
symbol: Amir_4313
gene_biotype: protein_coding
description:
  PFAM: Acyl-CoA dehydrogenase type 2 domain; acyl- CoA dehydrogenase domain protein; KEGG: bja:bll6452 acyl-CoA dehydrogenase.


ensembl_gene_id: Amir_4316
symbol: Amir_4316
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: scl:sce6302 AraC family transcriptional regulator.


ensembl_gene_id: Amir_4317
symbol: Amir_4317
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: reh:H16_A3489 transcriptional regulator, AraC- family.


ensembl_gene_id: Amir_4320
symbol: Amir_4320
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: bbt:BBta_4832 putative ABC transporter (substrate binding protein).


ensembl_gene_id: Amir_4321
symbol: Amir_4321
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_4833 putative ABC transporter (permease protein).


ensembl_gene_id: Amir_4322
symbol: Amir_4322
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_4834 putative ABC transporter (permease protein).


ensembl_gene_id: Amir_4323
symbol: Amir_4323
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: peptide ABC transporter; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Amir_4329
symbol: Amir_4329
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: bra:BRADO4150 hypothetical protein.


ensembl_gene_id: Amir_4331
symbol: Amir_4331
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 46; Ricin B lectin; SMART: Ricin B lectin; KEGG: bsu:BSU26890 chitosanase.


ensembl_gene_id: Amir_4332
symbol: Amir_4332
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dvm:DvMF_2540 response regulator receiver protein.


ensembl_gene_id: Amir_4333
symbol: Amir_4333
gene_biotype: protein_coding
description:
  PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: oxidoreductase protein; K07077.


ensembl_gene_id: Amir_4339
symbol: Amir_4339
gene_biotype: protein_coding
description:
  PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: sme:SMc02891 putative oxidoreductase transmembrane protein.


ensembl_gene_id: Amir_4345
symbol: Amir_4345
gene_biotype: protein_coding
description:
  TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bcb:BCB4264_A0206 drug resistance transporter, Bcr/CflA family.


ensembl_gene_id: Amir_4346
symbol: Amir_4346
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: dac:Daci_5402 transcriptional regulator, TrmB.


ensembl_gene_id: Amir_4347
symbol: Amir_4347
gene_biotype: protein_coding
description:
  Putative signal transduction protein with Nacht domain; SMART: AAA ATPase; KEGG: scl:sce3623 hypothetical protein.


ensembl_gene_id: Amir_4348
symbol: Amir_4348
gene_biotype: protein_coding
description:
  PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: rru:Rru_A3685 AsnC family transcriptional regulator.


ensembl_gene_id: Amir_4351
symbol: Amir_4351
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bxe:Bxe_A0699 two component transcriptional regulator.


ensembl_gene_id: Amir_4352
symbol: Amir_4352
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ade:Adeh_2943 histidine kinase.


ensembl_gene_id: Amir_4356
symbol: Amir_4356
gene_biotype: protein_coding
description:
  PFAM: KR domain protein; Beta-ketoacyl synthase; Acyl transferase; Erythronolide synthase docking; short- chain dehydrogenase/reductase SDR; phosphopantetheine- binding; KEGG: mxa:MXAN_4527 polyketide synthase.


ensembl_gene_id: Amir_4358
symbol: Amir_4358
gene_biotype: protein_coding
description:
  PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: scl:sce4847 hypothetical protein.


ensembl_gene_id: Amir_4359
symbol: Amir_4359
gene_biotype: protein_coding
description:
  PFAM: Acyl transferase; KR domain protein; Beta- ketoacyl synthase; short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; phosphopantetheine-binding; KEGG: mxa:MXAN_4527 polyketide synthase.


ensembl_gene_id: Amir_4361
symbol: Amir_4361
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1205; glycosyl transferase family 28; KEGG: ses:SARI_00205 hypothetical protein.


ensembl_gene_id: Amir_4362
symbol: Amir_4362
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: glo:Glov_3377 methyltransferase type 11.


ensembl_gene_id: Amir_4368
symbol: Amir_4368
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: IVD; IVD (ISOVALERYL-COA-DEHYDROGENASE); K00253 isovaleryl-CoA dehydrogenase.


ensembl_gene_id: Amir_4369
symbol: Amir_4369
gene_biotype: protein_coding
description:
  Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: rpd:RPD_4359 regulatory protein, TetR.


ensembl_gene_id: Amir_4370
symbol: Amir_4370
gene_biotype: protein_coding
description:
  PFAM: AMP-dependent synthetase and ligase; KEGG: scl:sce8696 putative long-chain fatty-acid-- CoA ligase.


ensembl_gene_id: Amir_4371
symbol: Amir_4371
gene_biotype: protein_coding
description:
  KEGG: mxa:MXAN_6988 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Amir_4372
symbol: Amir_4372
gene_biotype: protein_coding
description:
  PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: mxa:MXAN_6987 fatty oxidation complex, alpha subunit.


ensembl_gene_id: Amir_4376
symbol: Amir_4376
gene_biotype: protein_coding
description:
  PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: mxa:MXAN_1752 isoquinoline 1-oxidoreductase, beta subunit.


ensembl_gene_id: Amir_4381
symbol: Amir_4381
gene_biotype: protein_coding
description:
  PFAM: monooxygenase FAD-binding; glucose-inhibited division protein A; FAD dependent oxidoreductase; KEGG: bmn:BMA10247_A1734 putative monooxygenase.


ensembl_gene_id: Amir_4387
symbol: Amir_4387
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: floR; florfenicol/chloramphenicol resistance transporter protein.


ensembl_gene_id: Amir_4390
symbol: Amir_4390
gene_biotype: protein_coding
description:
  KEGG: bcz:BCZK1172 signal peptidase I; TIGRFAM: peptidase S26B, signal peptidase; PFAM: peptidase S24 and S26 domain protein; SMART: LamG domain protein jellyroll fold domain protein.


ensembl_gene_id: Amir_4393
symbol: Amir_4393
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: scl:sce6740 AraC family transcriptional regulator.


ensembl_gene_id: Amir_4395
symbol: Amir_4395
gene_biotype: protein_coding
description:
  Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: mex:Mext_4360 regulatory protein TetR.


ensembl_gene_id: Amir_4398
symbol: Amir_4398
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: esa:ESA_01962 hypothetical protein.


ensembl_gene_id: Amir_4400
symbol: Amir_4400
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; SMART: regulatory protein MerR; KEGG: har:HEAR1617 transcriptional regulator (CadR).


ensembl_gene_id: Amir_4402
symbol: Amir_4402
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: mes:Meso_2933 transcriptional regulator, GntR family.


ensembl_gene_id: Amir_4405
symbol: Amir_4405
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: reh:H16_A3378 transcriptional regulator, AraC- family.


ensembl_gene_id: Amir_4413
symbol: Amir_4413
gene_biotype: protein_coding
description:
  Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: afw:Anae109_2251 ferric uptake regulator family protein; Belongs to the Fur family.


ensembl_gene_id: Amir_4414
symbol: rpmF
gene_biotype: protein_coding
description:
  TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; Belongs to the bacterial ribosomal protein bL32 family.


ensembl_gene_id: Amir_4415
symbol: rpmE2
gene_biotype: protein_coding
description:
  TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: bha:BH3780 50S ribosomal protein L31 type B.


ensembl_gene_id: Amir_4416
symbol: Amir_4416
gene_biotype: protein_coding
description:
  PFAM: cobalamin synthesis CobW domain protein; KEGG: bxe:Bxe_A4503 putative cobalamin synthesis protein/P47K.


ensembl_gene_id: Amir_4421
symbol: Amir_4421
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: oca:OCAR_6548 transcriptional regulator, MarR family.


ensembl_gene_id: Amir_4422
symbol: Amir_4422
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: reh:H16_B0937 transcriptional regulator, AraC- family.


ensembl_gene_id: Amir_4424
symbol: Amir_4424
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: cti:RALTA_B0761 putative transcriptional regulator, AraC family.


ensembl_gene_id: Amir_4431
symbol: Amir_4431
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ccs:CCNA_02209 quinone oxidoreductase.


ensembl_gene_id: Amir_4434
symbol: Amir_4434
gene_biotype: protein_coding
description:
  PFAM: histidine kinase dimerization and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: gdi:GDI1194 putative two-component system sensor protein.


ensembl_gene_id: Amir_4438
symbol: Amir_4438
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: plu:plu2673 iron transport system ATP-binding protein YfeB.


ensembl_gene_id: Amir_4439
symbol: Amir_4439
gene_biotype: protein_coding
description:
  PFAM: periplasmic solute binding protein; KEGG: rsq:Rsph17025_0249 periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.


ensembl_gene_id: Amir_4440
symbol: Amir_4440
gene_biotype: protein_coding
description:
  TIGRFAM: thioester reductase domain protein; PFAM: short-chain dehydrogenase/reductase SDR; Beta- ketoacyl synthase; Male sterility domain; KR domain protein; Acyl transferase; Erythronolide synthase docking; phosphopantetheine-binding; NAD-dependent epimerase/dehydratase; KEGG: eca:ECA0602 type I polyketide synthase.


ensembl_gene_id: Amir_4441
symbol: Amir_4441
gene_biotype: protein_coding
description:
  PFAM: Acyl transferase; short-chain dehydrogenase/reductase SDR; Beta-ketoacyl synthase; KR domain protein; Erythronolide synthase docking; phosphopantetheine-binding; KEGG: mxa:MXAN_4527 polyketide synthase.


ensembl_gene_id: Amir_4442
symbol: Amir_4442
gene_biotype: protein_coding
description:
  PFAM: Acyl transferase; short-chain dehydrogenase/reductase SDR; Beta-ketoacyl synthase; KR domain protein; Erythronolide synthase docking; NAD- dependent epimerase/dehydratase; phosphopantetheine- binding; KEGG: mxa:MXAN_4527 polyketide synthase.


ensembl_gene_id: Amir_4443
symbol: Amir_4443
gene_biotype: protein_coding
description:
  PFAM: Acyl transferase; short-chain dehydrogenase/reductase SDR; Beta-ketoacyl synthase; KR domain protein; NAD-dependent epimerase/dehydratase; phosphopantetheine-binding; KEGG: eca:ECA0602 type I polyketide synthase.


ensembl_gene_id: Amir_4444
symbol: Amir_4444
gene_biotype: protein_coding
description:
  Putative transcriptional regulator, PucR family; KEGG: bur:Bcep18194_C6844 putative regulator of polyketide synthase expression.


ensembl_gene_id: Amir_4445
symbol: Amir_4445
gene_biotype: protein_coding
description:
  PFAM: aminotransferase class-III; KEGG: ppu:PP_2782 pyridoxalphosphate dependent aminotransferase, class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Amir_4447
symbol: Amir_4447
gene_biotype: protein_coding
description:
  PFAM: Acyl-CoA dehydrogenase type 2 domain; acyl- CoA dehydrogenase domain protein; KEGG: pol:Bpro_2060 acyl-CoA dehydrogenase, C- terminal type2.


ensembl_gene_id: Amir_4448
symbol: Amir_4448
gene_biotype: protein_coding
description:
  PFAM: flavin reductase domain protein FMN-binding; KEGG: nar:Saro_1462 flavin reductase-like, FMN- binding.


ensembl_gene_id: Amir_4451
symbol: Amir_4451
gene_biotype: protein_coding
description:
  Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; transcriptional regulator domain protein; KEGG: ade:Adeh_3289 SARP family transcriptional regulator.


ensembl_gene_id: Amir_4454
symbol: Amir_4454
gene_biotype: protein_coding
description:
  PFAM: NmrA family protein; NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: rpd:RPD_2341 NmrA-like.


ensembl_gene_id: Amir_4455
symbol: Amir_4455
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: mno:Mnod_1588 transcriptional regulator, AraC family.


ensembl_gene_id: Amir_4464
symbol: Amir_4464
gene_biotype: protein_coding
description:
  Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: atc:AGR_pAT_729 hypothetical protein.


ensembl_gene_id: Amir_4465
symbol: Amir_4465
gene_biotype: protein_coding
description:
  PFAM: Oxidoreductase FAD-binding domain protein; pyridoxamine 5'-phosphate oxidase-related FMN-binding; ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: scl:sce7711 hypothetical protein.


ensembl_gene_id: Amir_4468
symbol: Amir_4468
gene_biotype: protein_coding
description:
  PFAM: AMP-dependent synthetase and ligase; KEGG: afw:Anae109_0968 AMP-dependent synthetase and ligase.


ensembl_gene_id: Amir_4471
symbol: Amir_4471
gene_biotype: protein_coding
description:
  PFAM: Antibiotic biosynthesis monooxygenase; KEGG: jan:Jann_1295 antibiotic biosynthesis monooxygenase.


ensembl_gene_id: Amir_4477
symbol: Amir_4477
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: pap:PSPA7_0145 serine/threonine protein kinase PpkA.


ensembl_gene_id: Amir_4479
symbol: Amir_4479
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: zinc-binding dehydrogenase.


ensembl_gene_id: Amir_4485
symbol: Amir_4485
gene_biotype: protein_coding
description:
  KEGG: ade:Adeh_2548 L-lysine 2,3-aminomutase; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein.


ensembl_gene_id: Amir_4486
symbol: Amir_4486
gene_biotype: protein_coding
description:
  TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: scl:sce8257 non-ribosomal peptide synthetase.


ensembl_gene_id: Amir_4487
symbol: Amir_4487
gene_biotype: protein_coding
description:
  PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: afw:Anae109_4239 monooxygenase FAD-binding.


ensembl_gene_id: Amir_4488
symbol: Amir_4488
gene_biotype: protein_coding
description:
  L-lysine 6-monooxygenase (NADPH); PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN0980 L-ornithine 5-/L-lysine 6- monooxygenase.


ensembl_gene_id: Amir_4489
symbol: Amir_4489
gene_biotype: protein_coding
description:
  PFAM: Negative transcriptional regulator; KEGG: pmy:Pmen_0131 FMN-binding negative transcriptional regulator.


ensembl_gene_id: Amir_4490
symbol: Amir_4490
gene_biotype: protein_coding
description:
  TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; KEGG: hch:HCH_03445 non-ribosomal peptide synthetase modules and related protein.


ensembl_gene_id: Amir_4495
symbol: Amir_4495
gene_biotype: protein_coding
description:
  TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; KEGG: mxa:MXAN_4601 non-ribosomal peptide synthase.


ensembl_gene_id: Amir_4499
symbol: Amir_4499
gene_biotype: protein_coding
description:
  Threonine aldolase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class-III; KEGG: bpd:BURPS668_2111 L-allo-threonine aldolase.


ensembl_gene_id: Amir_4500
symbol: Amir_4500
gene_biotype: protein_coding
description:
  Cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; protein of unknown function DUF201; phosphoribosylglycinamide synthetase; KEGG: bps:BPSL1715 argininosuccinate lyase.


ensembl_gene_id: Amir_4503
symbol: Amir_4503
gene_biotype: protein_coding
description:
  TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; KEGG: aav:Aave_3731 amino acid adenylation domain.


ensembl_gene_id: Amir_4505
symbol: Amir_4505
gene_biotype: protein_coding
description:
  PFAM: condensation domain protein; KEGG: mxa:MXAN_4415 non-ribosomal peptide synthetase/polyketide synthase.


ensembl_gene_id: Amir_4506
symbol: Amir_4506
gene_biotype: protein_coding
description:
  TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; KEGG: mxa:MXAN_3779 non-ribosomal peptide synthetase/polyketide synthase.


ensembl_gene_id: Amir_4508
symbol: Amir_4508
gene_biotype: protein_coding
description:
  Superfamily I DNA and RNA helicase-like protein; KEGG: bcz:BCZK2539 UvrD/Rep helicase family protein.


ensembl_gene_id: Amir_4513
symbol: Amir_4513
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sfu:Sfum_2006 integral membrane sensor signal transduction histidine kinase.


ensembl_gene_id: Amir_4514
symbol: Amir_4514
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sus:Acid_5477 two component transcriptional regulator.


ensembl_gene_id: Amir_4515
symbol: Amir_4515
gene_biotype: protein_coding
description:
  PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: mxa:MXAN_5466 peptidase, S1E (streptogrisin A) subfamily.


ensembl_gene_id: Amir_4516
symbol: Amir_4516
gene_biotype: protein_coding
description:
  PFAM: cellulose-binding family II; lipolytic protein G-D-S-L family; SMART: cellulose-binding family II; KEGG: scl:sce7021 endoglucanase.


ensembl_gene_id: Amir_4523
symbol: Amir_4523
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: sit:TM1040_1898 twin-arginine translocation pathway signal.


ensembl_gene_id: Amir_4531
symbol: Amir_4531
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; KEGG: rso:RS03147 hypothetical protein; TIGRFAM: PAS sensor protein; PFAM: regulatory protein LuxR; PAS fold-4 domain protein; SMART: PAS domain containing protein; regulatory protein LuxR.


ensembl_gene_id: Amir_4534
symbol: Amir_4534
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase domain protein; Semialdehyde dehydrogenase NAD - binding; Oxidoreductase domain; KEGG: hne:HNE_0812 oxidoreductase, NAD-binding.


ensembl_gene_id: Amir_4544
symbol: Amir_4544
gene_biotype: protein_coding
description:
  TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: rso:RS05482 putative rhs-related transmembrane protein.


ensembl_gene_id: Amir_4546
symbol: Amir_4546
gene_biotype: protein_coding
description:
  PFAM: integrase family protein; KEGG: aeh:Mlg_1488 tyrosine recombinase XerD; Belongs to the 'phage' integrase family.


ensembl_gene_id: Amir_4549
symbol: Amir_4549
gene_biotype: protein_coding
description:
  PFAM: peptidase S1 and S6 chymotrypsin/Hap; FG-GAP repeat protein; SMART: peptidase S1 and S6 chymotrypsin/Hap; KEGG: acp:A2cp1_3748 hypothetical protein.


ensembl_gene_id: Amir_4550
symbol: Amir_4550
gene_biotype: protein_coding
description:
  Methyl-accepting chemotaxis sensory transducer; PFAM: protein of unknown function DUF312; KEGG: SNF2 superfamily protein.


ensembl_gene_id: Amir_4554
symbol: Amir_4554
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: afw:Anae109_3372 TPR repeat-containing protein.


ensembl_gene_id: Amir_4570
symbol: Amir_4570
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: pin:Ping_0445 colicin uptake-like protein.


ensembl_gene_id: Amir_4573
symbol: Amir_4573
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pmy:Pmen_3998 phosphoglycolate phosphatase.


ensembl_gene_id: Amir_4575
symbol: Amir_4575
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mno:Mnod_6944 phosphoglycolate phosphatase.


ensembl_gene_id: Amir_4587
symbol: Amir_4587
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pfo:Pfl01_3628 hypothetical protein.


ensembl_gene_id: Amir_4588
symbol: Amir_4588
gene_biotype: protein_coding
description:
  TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; phosphopantetheine-binding; condensation domain protein; KEGG: pap:PSPA7_2859 peptide synthase.


ensembl_gene_id: Amir_4589
symbol: Amir_4589
gene_biotype: protein_coding
description:
  TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: dac:Daci_4753 amino acid adenylation domain- containing protein.


ensembl_gene_id: Amir_4590
symbol: Amir_4590
gene_biotype: protein_coding
description:
  KEGG: sus:Acid_4167 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Amir_4591
symbol: Amir_4591
gene_biotype: protein_coding
description:
  Putative transcriptional regulator, GntR family; PFAM: aminotransferase class I and II; KEGG: hch:HCH_01676 transcriptional regulator.


ensembl_gene_id: Amir_4594
symbol: Amir_4594
gene_biotype: protein_coding
description:
  PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: mex:Mext_2357 D-cysteine desulfhydrase.


ensembl_gene_id: Amir_4597
symbol: Amir_4597
gene_biotype: protein_coding
description:
  Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; transcriptional regulator domain protein; KEGG: scl:sce8759 hypothetical protein.


ensembl_gene_id: Amir_4603
symbol: Amir_4603
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; condensation domain protein; KEGG: pau:PA14_21000 hypothetical protein.


ensembl_gene_id: Amir_4604
symbol: Amir_4604
gene_biotype: protein_coding
description:
  TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Beta- ketoacyl synthase; Alcohol dehydrogenase GroES domain protein; short-chain dehydrogenase/reductase SDR; condensation domain protein; Acyl transferase; KR domain protein; Alcohol dehydrogenase zinc-binding domain protein; Thioesterase; phosphopantetheine-binding; KEGG: pae:PA3327 non-ribosomal peptide synthetase.


ensembl_gene_id: Amir_4606
symbol: Amir_4606
gene_biotype: protein_coding
description:
  PFAM: Carboxylesterase type B; KEGG: rpe:RPE_0251 carboxylesterase, type B; Belongs to the type-B carboxylesterase/lipase family.


ensembl_gene_id: Amir_4608
symbol: Amir_4608
gene_biotype: protein_coding
description:
  Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: scl:sce0662 LacI family transcription regulator.


ensembl_gene_id: Amir_4609
symbol: Amir_4609
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH3845 ABC transporter (substrate-binding protein).


ensembl_gene_id: Amir_4610
symbol: Amir_4610
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rlt:Rleg2_5350 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Amir_4611
symbol: Amir_4611
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_0946 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Amir_4612
symbol: Amir_4612
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 3 domain protein; KEGG: sus:Acid_6936 glycoside hydrolase family 3 protein.


ensembl_gene_id: Amir_4614
symbol: Amir_4614
gene_biotype: protein_coding
description:
  Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: mlo:mll1924 transcription regulator.


ensembl_gene_id: Amir_4621
symbol: Amir_4621
gene_biotype: protein_coding
description:
  PFAM: Ricin B lectin; glycoside hydrolase family 5; SMART: Ricin B lectin; KEGG: scl:sce0748 Ricin precursor and Poly(3- hydroxybutyrate) depolymerase fusion; Belongs to the glycosyl hydrolase 5 (cellulase A) family.


ensembl_gene_id: Amir_4622
symbol: Amir_4622
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; NAD- dependent epimerase/dehydratase; KEGG: scl:sce7498 short chain dehydrogenase.


ensembl_gene_id: Amir_4623
symbol: Amir_4623
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; transcription activator effector binding; SMART: regulatory protein MerR; KEGG: cvi:CV_4236 MerR family transcriptional regulator.


ensembl_gene_id: Amir_4624
symbol: Amir_4624
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; PBS lyase HEAT domain protein repeat-containing protein; SMART: regulatory protein MerR; PBS lyase HEAT domain protein repeat-containing protein; KEGG: bur:Bcep18194_B2665 MerR family transcriptional regulator.


ensembl_gene_id: Amir_4628
symbol: Amir_4628
gene_biotype: protein_coding
description:
  MCP methyltransferase, CheR-type; PFAM: Methyltransferase type 12; Methyltransferase type 11; MCP methyltransferase CheR-type; KEGG: pfl:PFL_1036 ToxA protein.


ensembl_gene_id: Amir_4631
symbol: Amir_4631
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: transcriptional regulator, XRE family.


ensembl_gene_id: Amir_4632
symbol: Amir_4632
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bpt:Bpet4146 LysR family transcriptional regulator.


ensembl_gene_id: Amir_4633
symbol: Amir_4633
gene_biotype: protein_coding
description:
  PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: met:M446_6836 threonine dehydratase.


ensembl_gene_id: Amir_4634
symbol: Amir_4634
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 42 domain 5 loop region; Glycosyl hydrolase family 98 putative carbohydrate binding module; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module; LamG domain protein jellyroll fold domain protein; KEGG: sus:Acid_4607 beta-galactosidase.


ensembl_gene_id: Amir_4637
symbol: Amir_4637
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: mlo:mlr2819 oxidoreductase.


ensembl_gene_id: Amir_4638
symbol: Amir_4638
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bch:Bcen2424_4743 MarR family transcriptional regulator.


ensembl_gene_id: Amir_4646
symbol: Amir_4646
gene_biotype: protein_coding
description:
  TIGRFAM: mycothiol-dependent formaldehyde dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: oca:OCAR_6856 alcohol dehydrogenase class 3.


ensembl_gene_id: Amir_4648
symbol: Amir_4648
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF201; phosphoribosylglycinamide synthetase; KEGG: scl:sce5193 hypothetical protein.


ensembl_gene_id: Amir_4652
symbol: Amir_4652
gene_biotype: protein_coding
description:
  PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: bcy:Bcer98_3668 alpha/beta hydrolase domain- containing protein.


ensembl_gene_id: Amir_4654
symbol: Amir_4654
gene_biotype: protein_coding
description:
  TIGRFAM: 3-carboxy-cis,cis-muconate cycloisomerase; PFAM: fumarate lyase; KEGG: reu:Reut_B5023 3-carboxy-cis,cis-muconate cycloisomerase.


ensembl_gene_id: Amir_4658
symbol: Amir_4658
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: short chain dehydrogenase protein.


ensembl_gene_id: Amir_4660
symbol: Amir_4660
gene_biotype: protein_coding
description:
  PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: dps:DP1551 hypothetical protein.


ensembl_gene_id: Amir_4665
symbol: Amir_4665
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rlt:Rleg2_1526 hypothetical protein.


ensembl_gene_id: Amir_4679
symbol: Amir_4679
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; aminoglycoside phosphotransferase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: mxa:MXAN_5176 serine/threonine protein kinase.


ensembl_gene_id: Amir_4682
symbol: Amir_4682
gene_biotype: protein_coding
description:
  PFAM: cellulose-binding family II; SMART: cellulose-binding family II; KEGG: ccs:CCNA_03254 pectate lyase.


ensembl_gene_id: Amir_4684
symbol: Amir_4684
gene_biotype: protein_coding
description:
  PFAM: AMP-dependent synthetase and ligase; KEGG: eba:ebA2050 putative ADP-producing CoA ligase, feruloyl-CoA synthetase.


ensembl_gene_id: Amir_4685
symbol: Amir_4685
gene_biotype: protein_coding
description:
  PFAM: Aldehyde Dehydrogenase; KEGG: sus:Acid_1786 succinic semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: Amir_4687
symbol: Amir_4687
gene_biotype: protein_coding
description:
  Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: beta-lactamase; KEGG: scl:sce3869 hypothetical protein.


ensembl_gene_id: Amir_4688
symbol: Amir_4688
gene_biotype: protein_coding
description:
  PFAM: histidine kinase dimerization and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: bme:BMEI1583 sensor protein DegS.


ensembl_gene_id: Amir_4689
symbol: Amir_4689
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; response regulator receiver; KEGG: bsu:BSU08300 hypothetical protein.


ensembl_gene_id: Amir_4691
symbol: Amir_4691
gene_biotype: protein_coding
description:
  Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: beta-lactamase; KEGG: scl:sce3868 alkaline D-peptidase.


ensembl_gene_id: Amir_4694
symbol: Amir_4694
gene_biotype: protein_coding
description:
  Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; transcriptional regulator domain protein; KEGG: sme:SMa0464 adenylate/guanylate cyclase.


ensembl_gene_id: Amir_4698
symbol: Amir_4698
gene_biotype: protein_coding
description:
  TIGRFAM: thioester reductase domain protein; PFAM: Male sterility domain; short-chain dehydrogenase/reductase SDR; Beta-ketoacyl synthase; 3- beta hydroxysteroid dehydrogenase/isomerase; Acyl transferase; KR domain protein; Erythronolide synthase docking; phosphopantetheine-binding; NAD-dependent epimerase/dehydratase; KEGG: pst:PSPTO_4687 coronafacic acid polyketide synthetase II.


ensembl_gene_id: Amir_4699
symbol: Amir_4699
gene_biotype: protein_coding
description:
  Mycocerosate synthase., Erythronolide synthase; PFAM: Acyl transferase; short-chain dehydrogenase/reductase SDR; Beta-ketoacyl synthase; KR domain protein; phosphopantetheine-binding; KEGG: met:M446_0170 beta-ketoacyl synthase.


ensembl_gene_id: Amir_4700
symbol: Amir_4700
gene_biotype: protein_coding
description:
  PFAM: flavin reductase domain protein FMN-binding; KEGG: bpy:Bphyt_1723 flavin reductase domain protein FMN-binding.


ensembl_gene_id: Amir_4705
symbol: Amir_4705
gene_biotype: protein_coding
description:
  Transcriptional regulator, HxlR family; PFAM: helix-turn-helix HxlR type; KEGG: hypothetical protein.


ensembl_gene_id: Amir_4707
symbol: Amir_4707
gene_biotype: protein_coding
description:
  PFAM: Acyl-CoA dehydrogenase type 2 domain; acyl- CoA dehydrogenase domain protein; KEGG: rlt:Rleg2_5725 acyl-CoA dehydrogenase type 2 domain.


ensembl_gene_id: Amir_4713
symbol: Amir_4713
gene_biotype: protein_coding
description:
  Xaa-Pro aminopeptidase; PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: scl:sce8667 hypothetical protein.


ensembl_gene_id: Amir_4715
symbol: Amir_4715
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: dol:Dole_0940 oligopeptide/dipeptide ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Amir_4716
symbol: Amir_4716
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: bja:bll2870 ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Amir_4717
symbol: Amir_4717
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: peptide transport system permease protein; K02033 peptide/nickel transport system permease protein.


ensembl_gene_id: Amir_4718
symbol: Amir_4718
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gme:Gmet_1236 binding-protein dependent transport system inner membrane protein.


ensembl_gene_id: Amir_4719
symbol: Amir_4719
gene_biotype: protein_coding
description:
  4-phytase; PFAM: extracellular solute-binding protein family 5; KEGG: rle:pRL110448 putative substrate-binding ABC transporter protein.


ensembl_gene_id: Amir_4720
symbol: Amir_4720
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bbr:BB0470 GntR family transcriptional regulator.


ensembl_gene_id: Amir_4722
symbol: Amir_4722
gene_biotype: protein_coding
description:
  PFAM: proline racemase; KEGG: bat:BAS2643 proline racemase, putative; Belongs to the proline racemase family.


ensembl_gene_id: Amir_4723
symbol: Amir_4723
gene_biotype: protein_coding
description:
  PFAM: dihydrodipicolinate synthetase; KEGG: swd:Swoo_2822 dihydrodipicolinate synthetase; Belongs to the DapA family.


ensembl_gene_id: Amir_4724
symbol: Amir_4724
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: bph:Bphy_4670 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Amir_4728
symbol: deoC
gene_biotype: protein_coding
description:
  Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.


ensembl_gene_id: Amir_4729
symbol: Amir_4729
gene_biotype: protein_coding
description:
  PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: bac:BamMC406_6022 LacI family transcription regulator.


ensembl_gene_id: Amir_4730
symbol: Amir_4730
gene_biotype: protein_coding
description:
  KEGG: afw:Anae109_0662 pyrimidine-nucleoside phosphorylase; TIGRFAM: pyrimidine-nucleoside phosphorylase; PFAM: glycosyl transferase family 3; Pyrimidine nucleoside phosphorylase domain; Glycosyl transferase, family 3-like.


ensembl_gene_id: Amir_4732
symbol: Amir_4732
gene_biotype: protein_coding
description:
  Endo-1,4-beta-xylanase; KEGG: glycosyl hydrolase family 10 protein; PFAM: glycoside hydrolase family 10; cellulose- binding family II; SMART: glycoside hydrolase family 10; cellulose- binding family II.


ensembl_gene_id: Amir_4745
symbol: Amir_4745
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: pla:Plav_1868 RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Amir_4747
symbol: Amir_4747
gene_biotype: protein_coding
description:
  NAD(P)(+) transhydrogenase (AB-specific); The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.


ensembl_gene_id: Amir_4749
symbol: Amir_4749
gene_biotype: protein_coding
description:
  PFAM: alanine dehydrogenase/PNT domain protein; KEGG: tgr:Tgr7_0268 NAD(P)(+) transhydrogenase (AB- specific).


ensembl_gene_id: Amir_4752
symbol: Amir_4752
gene_biotype: protein_coding
description:
  Nitrite reductase (NO-forming); PFAM: multicopper oxidase type 3; multicopper oxidase type 2; KEGG: oca:OCAR_7249 copper-containing nitrite reductase.


ensembl_gene_id: Amir_4758
symbol: Amir_4758
gene_biotype: protein_coding
description:
  PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A; KEGG: bba:Bd3234 carboxypeptidase T precursor.


ensembl_gene_id: Amir_4768
symbol: Amir_4768
gene_biotype: protein_coding
description:
  PFAM: periplasmic solute binding protein; KEGG: bra:BRADO6268 ABC transporter substrate- binding protein; Belongs to the bacterial solute-binding protein 9 family.


ensembl_gene_id: Amir_4770
symbol: Amir_4770
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcz:pE33L54_0038 manganese ABC transporter, ATP-binding protein.


ensembl_gene_id: Amir_4773
symbol: Amir_4773
gene_biotype: protein_coding
description:
  PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: cko:CKO_00925 hypothetical protein.


ensembl_gene_id: Amir_4774
symbol: Amir_4774
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF916 cell surface putative; KEGG: bcj:BCAM2172 putative patatin-like phospholipase.


ensembl_gene_id: Amir_4781
symbol: Amir_4781
gene_biotype: protein_coding
description:
  PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: bpd:BURPS668_2001 cysteine synthase.


ensembl_gene_id: Amir_4782
symbol: Amir_4782
gene_biotype: protein_coding
description:
  PFAM: periplasmic binding protein; KEGG: ABC transporter substrate binding protein (iron); K02016 iron complex transport system substrate-binding protein.


ensembl_gene_id: Amir_4783
symbol: Amir_4783
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcj:BCAL1346 putative Fe uptake system ATP- binding protein.


ensembl_gene_id: Amir_4785
symbol: Amir_4785
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; UbiE/COQ5 methyltransferase; Methyltransferase type 12; KEGG: mca:MCA3003 UbiE/COQ5 family methlytransferase.


ensembl_gene_id: Amir_4786
symbol: Amir_4786
gene_biotype: protein_coding
description:
  PFAM: regulatory protein TetR; KEGG: rec:RHECIAT_CH0000638 probable transcriptional regulator protein, TetR family.


ensembl_gene_id: Amir_4787
symbol: Amir_4787
gene_biotype: protein_coding
description:
  PFAM: Amidase; KEGG: bpt:Bpet1417 glutamyl-tRNA(Gln) amidotransferase subunit A; Belongs to the amidase family.


ensembl_gene_id: Amir_4789
symbol: Amir_4789
gene_biotype: protein_coding
description:
  PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: aba:Acid345_1672 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: Amir_4791
symbol: Amir_4791
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pag:PLES_56121 putative transcriptional regulator.


ensembl_gene_id: Amir_4792
symbol: Amir_4792
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sus:Acid_6073 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Amir_4794
symbol: Amir_4794
gene_biotype: protein_coding
description:
  Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: ank:AnaeK_1572 regulatory protein TetR.


ensembl_gene_id: Amir_4795
symbol: Amir_4795
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: acp:A2cp1_1649 NAD-dependent epimerase/dehydratase.


ensembl_gene_id: Amir_4800
symbol: Amir_4800
gene_biotype: protein_coding
description:
  Transcriptional regulator, winged helix family; PFAM: transcriptional regulator domain protein; transcriptional activator domain; KEGG: afw:Anae109_3667 ATPase-like protein.


ensembl_gene_id: Amir_4808
symbol: Amir_4808
gene_biotype: protein_coding
description:
  Nucleoside-diphosphate-sugar epimerase-like protein; KEGG: swi:Swit_3769 NAD-dependent epimerase/dehydratase.


ensembl_gene_id: Amir_4811
symbol: Amir_4811
gene_biotype: protein_coding
description:
  Putative signal transduction protein with Nacht domain; KEGG: pmy:Pmen_1048 signal transduction protein.


ensembl_gene_id: Amir_4816
symbol: Amir_4816
gene_biotype: protein_coding
description:
  PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: hypothetical protein.


ensembl_gene_id: Amir_4818
symbol: Amir_4818
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: atc:AGR_L_1778 hypothetical protein.


ensembl_gene_id: Amir_4821
symbol: Amir_4821
gene_biotype: protein_coding
description:
  KEGG: spe:Spro_1142 glycerate kinase; TIGRFAM: glycerate kinase; PFAM: glycerate kinase; Belongs to the glycerate kinase type-1 family.


ensembl_gene_id: Amir_4824
symbol: Amir_4824
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_4368 transcriptional regulator, LysR family.


ensembl_gene_id: Amir_4825
symbol: Amir_4825
gene_biotype: protein_coding
description:
  PFAM: aminotransferase class-III; KEGG: bxe:Bxe_B2675 aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Amir_4841
symbol: Amir_4841
gene_biotype: protein_coding
description:
  Sterol 3-beta-glucosyltransferase; PFAM: glycosyl transferase family 28; KEGG: afw:Anae109_0485 glycosyl transferase family protein.


ensembl_gene_id: Amir_4842
symbol: Amir_4842
gene_biotype: protein_coding
description:
  PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: scl:sce8590 prolyl oligopeptidase.


ensembl_gene_id: Amir_4843
symbol: Amir_4843
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; short- chain dehydrogenase/reductase SDR; KEGG: ppd:Ppro_3571 NAD-dependent epimerase/dehydratase.


ensembl_gene_id: Amir_4848
symbol: Amir_4848
gene_biotype: protein_coding
description:
  Serine/threonine protein kinase; PFAM: Lanthionine synthetase C family protein; aminoglycoside phosphotransferase; SMART: serine/threonine protein kinase; KEGG: smt:Smal_2130 serine/threonine protein kinase.


ensembl_gene_id: Amir_4849
symbol: Amir_4849
gene_biotype: protein_coding
description:
  PFAM: flavoprotein; KEGG: tgr:Tgr7_0102 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase.


ensembl_gene_id: Amir_4852
symbol: Amir_4852
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: tbd:Tbd_1549 3-oxoacyl-[acyl-carrier-protein] reductase.


ensembl_gene_id: Amir_4853
symbol: Amir_4853
gene_biotype: protein_coding
description:
  PFAM: Acyl transferase; Beta-ketoacyl synthase; KR domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KEGG: mxa:MXAN_4528 polyketide synthase.


ensembl_gene_id: Amir_4856
symbol: Amir_4856
gene_biotype: protein_coding
description:
  PFAM: AMP-dependent synthetase and ligase; KEGG: bvi:Bcep1808_2651 AMP-dependent synthetase and ligase.


ensembl_gene_id: Amir_4857
symbol: Amir_4857
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.


ensembl_gene_id: Amir_4859
symbol: Amir_4859
gene_biotype: protein_coding
description:
  PFAM: thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding; thiamine pyrophosphate protein TPP binding domain protein; KEGG: eba:ebA4751 acetolactate synthase catalytic subunit; Belongs to the TPP enzyme family.


ensembl_gene_id: Amir_4861
symbol: acpP-2
gene_biotype: protein_coding
description:
  Phosphopantetheine-binding; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.


ensembl_gene_id: Amir_4862
symbol: Amir_4862
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: bsu:BSU34820 hypothetical protein.


ensembl_gene_id: Amir_4864
symbol: Amir_4864
gene_biotype: protein_coding
description:
  TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_B1779 major facilitator superfamily multidrug efflux transporter.


ensembl_gene_id: Amir_4865
symbol: Amir_4865
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: bmv:BMASAVP1_0279 EmrB/QacA family drug resistance transporter.


ensembl_gene_id: Amir_4867
symbol: Amir_4867
gene_biotype: protein_coding
description:
  Cyclohexanone monooxygenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pzu:PHZ_c1832 putative monooxygenase.


ensembl_gene_id: Amir_4868
symbol: Amir_4868
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: kpe:KPK_1169 DNA-binding protein.


ensembl_gene_id: Amir_4869
symbol: Amir_4869
gene_biotype: protein_coding
description:
  TIGRFAM: YD repeat protein; SMART: Hedgehog/intein hint domain protein; KEGG: dal:Dalk_1487 YD repeat protein.


ensembl_gene_id: Amir_4870
symbol: Amir_4870
gene_biotype: protein_coding
description:
  SMART: LamG domain protein jellyroll fold domain protein; KEGG: bat:BAS1022 wall-associated protein, putative.


ensembl_gene_id: Amir_4872
symbol: Amir_4872
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 3 domain protein; KEGG: glycoside hydrolase, family 3, N- terminal:glycoside hydrolase, family 3, C-terminal.


ensembl_gene_id: Amir_4879
symbol: Amir_4879
gene_biotype: protein_coding
description:
  KEGG: mxa:MXAN_2888 coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: Amir_4880
symbol: Amir_4880
gene_biotype: protein_coding
description:
  PFAM: NUDIX hydrolase; KEGG: mxa:MXAN_3769 hydrolase, NUDIX family; Belongs to the Nudix hydrolase family.


ensembl_gene_id: Amir_4884
symbol: Amir_4884
gene_biotype: protein_coding
description:
  PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: sus:Acid_3105 IclR family transcriptional regulator.


ensembl_gene_id: Amir_4886
symbol: Amir_4886
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sat:SYN_00367 sulfate transport ATP-binding protein.


ensembl_gene_id: Amir_4887
symbol: Amir_4887
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bav:BAV0644 ABC transporter, permease protein.


ensembl_gene_id: Amir_4888
symbol: Amir_4888
gene_biotype: protein_coding
description:
  PFAM: NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3; KEGG: mes:Meso_0815 putative sulfonate transport system substrate-binding protein.


ensembl_gene_id: Amir_4889
symbol: Amir_4889
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_1169 putative ABC transporter permease protein.


ensembl_gene_id: Amir_4891
symbol: Amir_4891
gene_biotype: protein_coding
description:
  Dihydroorotase, multifunctional complex type; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.


ensembl_gene_id: Amir_4892
symbol: Amir_4892
gene_biotype: protein_coding
description:
  PFAM: Kelch repeat-containing protein; Kelch repeat protein; SMART: Kelch repeat-containing protein; KEGG: mex:Mext_0574 kelch repeat-containing protein.


ensembl_gene_id: Amir_4893
symbol: Amir_4893
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ade:Adeh_2212 LysR family transcriptional regulator.


ensembl_gene_id: Amir_4894
symbol: Amir_4894
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: scl:sce5237 protein kinase.


ensembl_gene_id: Amir_4896
symbol: Amir_4896
gene_biotype: protein_coding
description:
  PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bam:Bamb_4722 NADH:flavin oxidoreductase/NADH oxidase.


ensembl_gene_id: Amir_4897
symbol: Amir_4897
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; regulatory protein ArsR; SMART: regulatory protein MarR; KEGG: azc:AZC_0116 regulatory protein.


ensembl_gene_id: Amir_4901
symbol: Amir_4901
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: reu:Reut_A1539 LuxR family transcriptional regulator.


ensembl_gene_id: Amir_4903
symbol: Amir_4903
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: jan:Jann_4133 GntR family transcriptional regulator.


ensembl_gene_id: Amir_4905
symbol: Amir_4905
gene_biotype: protein_coding
description:
  PFAM: transport system permease protein; KEGG: dac:Daci_3152 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: Amir_4906
symbol: Amir_4906
gene_biotype: protein_coding
description:
  PFAM: transport system permease protein; KEGG: atc:AGR_pAT_449 ferric enterobactin transport protein FepD; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: Amir_4910
symbol: Amir_4910
gene_biotype: protein_coding
description:
  PFAM: Luciferase-like monooxygenase; KEGG: mxa:MXAN_4001 non-ribosomal peptide synthase/polyketide synthase.


ensembl_gene_id: Amir_4911
symbol: Amir_4911
gene_biotype: protein_coding
description:
  PFAM: Beta-ketoacyl synthase; KR domain protein; Acyl transferase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KEGG: mxa:MXAN_3620 polyketide synthase type I.


ensembl_gene_id: Amir_4916
symbol: Amir_4916
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: bpy:Bphyt_3134 major facilitator superfamily MFS_1.


ensembl_gene_id: Amir_4921
symbol: Amir_4921
gene_biotype: protein_coding
description:
  Protein serine phosphatase with GAF(s) sensor(s); PFAM: Stage II sporulation E family protein; GAF domain protein; SMART: protein phosphatase 2C domain protein; GAF domain protein; KEGG: sus:Acid_6601 serine phosphatase.


ensembl_gene_id: Amir_4927
symbol: Amir_4927
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: eca:ECA1549 putative ABC transporter substrate-binding protein.


ensembl_gene_id: Amir_4928
symbol: Amir_4928
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_2742 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Amir_4931
symbol: Amir_4931
gene_biotype: protein_coding
description:
  PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: pde:Pden_4560 sodium/sulphate symporter.


ensembl_gene_id: Amir_4932
symbol: Amir_4932
gene_biotype: protein_coding
description:
  KEGG: pde:Pden_4561 glycerate kinase; TIGRFAM: glycerate kinase; PFAM: glycerate kinase; Belongs to the glycerate kinase type-1 family.


ensembl_gene_id: Amir_4935
symbol: Amir_4935
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: two component heavy metal response transcriptional regulator, winged helix family.


ensembl_gene_id: Amir_4937
symbol: Amir_4937
gene_biotype: protein_coding
description:
  Na+/H+ antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.


ensembl_gene_id: Amir_4942
symbol: Amir_4942
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; NAD- dependent epimerase/dehydratase; KEGG: short-chain dehydrogenase/reductase (SDR) family protein.


ensembl_gene_id: Amir_4950
symbol: Amir_4950
gene_biotype: protein_coding
description:
  PFAM: CDP-alcohol phosphatidyltransferase; KEGG: ank:AnaeK_2943 CDP-alcohol phosphatidyltransferase.


ensembl_gene_id: Amir_4958
symbol: Amir_4958
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase group 1; KEGG: ade:Adeh_3504 phosphatidylinositol alpha- mannosyltransferase.


ensembl_gene_id: Amir_4963
symbol: Amir_4963
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 3 domain protein; KEGG: rfr:Rfer_1113 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 3 family.


ensembl_gene_id: Amir_4964
symbol: Amir_4964
gene_biotype: protein_coding
description:
  PFAM: Pectinesterase; Ricin B lectin; Pectate lyase/Amb allergen; SMART: Ricin B lectin; Parallel beta-helix repeat; Pectate lyase/Amb allergen; KEGG: bha:BH0698 pectate lyase.


ensembl_gene_id: Amir_4965
symbol: Amir_4965
gene_biotype: protein_coding
description:
  KEGG: pip; proline iminopeptidase; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; Belongs to the peptidase S33 family.


ensembl_gene_id: Amir_4966
symbol: Amir_4966
gene_biotype: protein_coding
description:
  Alpha-N-arabinofuranosidase; KEGG: hypothetical protein; PFAM: glycoside hydrolase family 62; Ricin B lectin; SMART: Ricin B lectin.


ensembl_gene_id: Amir_4970
symbol: Amir_4970
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 12; Methyltransferase type 11; Tellurite resistance methyltransferase, TehB, core; thiopurine S-methyltransferase; KEGG: scl:sce2146 putative methyltransferase.


ensembl_gene_id: Amir_4974
symbol: Amir_4974
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: MYH3; myosin, heavy chain 3, skeletal muscle, embryonic; K10352 myosin heavy chain.


ensembl_gene_id: Amir_4976
symbol: Amir_4976
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: cak:Caul_0809 MarR family transcriptional regulator.


ensembl_gene_id: Amir_4977
symbol: Amir_4977
gene_biotype: protein_coding
description:
  TIGRFAM: glycosyltransferase, MGT family; PFAM: protein of unknown function DUF1205; KEGG: bsu:BSU12220 hypothetical protein.


ensembl_gene_id: Amir_4978
symbol: Amir_4978
gene_biotype: protein_coding
description:
  TIGRFAM: glycosyltransferase, MGT family; PFAM: protein of unknown function DUF1205; glycosyl transferase family 28; KEGG: ecf:ECH74115_1369 glycosyl transferase.


ensembl_gene_id: Amir_4979
symbol: Amir_4979
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: scl:sce2495 hemolysin.


ensembl_gene_id: Amir_4985
symbol: Amir_4985
gene_biotype: protein_coding
description:
  PFAM: Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: scl:sce5225 protein kinase.


ensembl_gene_id: Amir_4990
symbol: Amir_4990
gene_biotype: protein_coding
description:
  TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: nmc:NMC1726 hypothetical protein; Belongs to the SUA5 family.


ensembl_gene_id: Amir_4996
symbol: Amir_4996
gene_biotype: protein_coding
description:
  PFAM: histidine kinase dimerization and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: mch:Mchl_4713 histidine kinase.


ensembl_gene_id: Amir_5001
symbol: Amir_5001
gene_biotype: protein_coding
description:
  PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain- containing protein; E3 binding domain protein; KEGG: bpt:Bpet3509 branched-chain alpha-keto acid dehydrogenase subunit E2.


ensembl_gene_id: Amir_5002
symbol: Amir_5002
gene_biotype: protein_coding
description:
  PFAM: Transketolase central region; Transketolase domain protein; KEGG: nha:Nham_3108 transketolase, central region.


ensembl_gene_id: Amir_5003
symbol: Amir_5003
gene_biotype: protein_coding
description:
  KEGG: ank:AnaeK_1422 pyruvate dehydrogenase (acetyl- transferring); TIGRFAM: pyruvate dehydrogenase (acetyl- transferring) E1 component, alpha subunit; PFAM: dehydrogenase E1 component.


ensembl_gene_id: Amir_5004
symbol: Amir_5004
gene_biotype: protein_coding
description:
  PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: har:HEAR0121 leucine-responsive regulatory protein.


ensembl_gene_id: Amir_5006
symbol: Amir_5006
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ent:Ent638_4061 two-component sensor protein.


ensembl_gene_id: Amir_5007
symbol: Amir_5007
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: pap:PSPA7_3717 KDP operon transcriptional regulatory protein KdpE.


ensembl_gene_id: Amir_5008
symbol: Amir_5008
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: similar to Ras GTPase-activating protein- binding protein 2 (G3BP-2) (GAP SH3 domain-binding protein 2).


ensembl_gene_id: Amir_5009
symbol: Amir_5009
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: cti:RALTA_A3069 putative membrane bound protein, weak cytochrome c domains.


ensembl_gene_id: Amir_5012
symbol: Amir_5012
gene_biotype: protein_coding
description:
  KEGG: mrd:Mrad2831_4352 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein.


ensembl_gene_id: Amir_5014
symbol: Amir_5014
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: smd:Smed_2747 alcohol dehydrogenase GroES domain protein.


ensembl_gene_id: Amir_5016
symbol: Amir_5016
gene_biotype: protein_coding
description:
  Putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: mxa:MXAN_6248 cyclic nucleotide-binding domain protein.


ensembl_gene_id: Amir_5017
symbol: Amir_5017
gene_biotype: protein_coding
description:
  Putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: scl:sce1442 putative nucleotide-binding protein.


ensembl_gene_id: Amir_5018
symbol: Amir_5018
gene_biotype: protein_coding
description:
  PFAM: Polyprenyl synthetase; KEGG: sfu:Sfum_1417 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: Amir_5024
symbol: Amir_5024
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: rpe:RPE_0795 RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Amir_5027
symbol: Amir_5027
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: rso:RSc0632 putative NADP-dependent alcohol dehydrogenase oxidoreductase protein.


ensembl_gene_id: Amir_5032
symbol: Amir_5032
gene_biotype: protein_coding
description:
  PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: dar:Daro_0405 phospholipid/glycerol acyltransferase.


ensembl_gene_id: Amir_5033
symbol: Amir_5033
gene_biotype: protein_coding
description:
  PFAM: Stage II sporulation E family protein; response regulator receiver; SMART: protein phosphatase 2C domain protein; response regulator receiver; KEGG: mag:amb3537 serine phosphatase RsbU, regulator of sigma subunit.


ensembl_gene_id: Amir_5034
symbol: Amir_5034
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: dal:Dalk_3400 histidine kinase.


ensembl_gene_id: Amir_5035
symbol: Amir_5035
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: mag:amb2979 FOG: CheY-like receiver.


ensembl_gene_id: Amir_5047
symbol: Amir_5047
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bid:Bind_1825 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Amir_5048
symbol: Amir_5048
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bur:Bcep18194_B1012 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Amir_5053
symbol: Amir_5053
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spe:Spro_3426 ABC transporter-related protein.


ensembl_gene_id: Amir_5056
symbol: Amir_5056
gene_biotype: protein_coding
description:
  PFAM: PfkB domain protein; KEGG: bha:BH3724 2-keto-3-deoxygluconate kinase; Belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: Amir_5057
symbol: Amir_5057
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: gdi:GDI1202 L-idonate 5-dehydrogenase.


ensembl_gene_id: Amir_5058
symbol: Amir_5058
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: eca:ECA0919 transport protein.


ensembl_gene_id: Amir_5059
symbol: Amir_5059
gene_biotype: protein_coding
description:
  PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: mmr:Mmar10_0223 mannitol dehydrogenase.


ensembl_gene_id: Amir_5060
symbol: Amir_5060
gene_biotype: protein_coding
description:
  PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: eca:ECA0917 putative starvation sensing mandelate racemase / muconate lactonizing enzyme.


ensembl_gene_id: Amir_5061
symbol: Amir_5061
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; KEGG: sme:SMa0065 GntR family transcriptional regulator.


ensembl_gene_id: Amir_5067
symbol: Amir_5067
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; ABC transporter transmembrane region; KEGG: met:M446_4330 lipid ABC transporter ATPase/inner membrane protein.


ensembl_gene_id: Amir_5068
symbol: Amir_5068
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: afw:Anae109_3226 ABC transporter related.


ensembl_gene_id: Amir_5070
symbol: Amir_5070
gene_biotype: protein_coding
description:
  PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: Animal peptidoglycan recognition protein PGRP; N-acetylmuramoyl-L-alanine amidase family 2; KEGG: similar to PGRP-SC1a protein.


ensembl_gene_id: Amir_5071
symbol: Amir_5071
gene_biotype: protein_coding
description:
  PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: mxa:MXAN_6060 amine oxidase, flavin- containing.


ensembl_gene_id: Amir_5072
symbol: Amir_5072
gene_biotype: protein_coding
description:
  KEGG: endo-1,4-beta-xylanase; K01181 endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; cellulose- binding family II; SMART: glycoside hydrolase family 10; cellulose- binding family II.


ensembl_gene_id: Amir_5075
symbol: Amir_5075
gene_biotype: protein_coding
description:
  TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR; KEGG: bav:BAV0190 lysine export transcriptional regulator.


ensembl_gene_id: Amir_5078
symbol: Amir_5078
gene_biotype: protein_coding
description:
  PFAM: bifunctional deaminase-reductase domain protein; KEGG: ade:Adeh_1010 bifunctional deaminase- reductase-like.


ensembl_gene_id: Amir_5080
symbol: Amir_5080
gene_biotype: protein_coding
description:
  KEGG: bac:BamMC406_5247 IclR family transcriptional regulator; TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR.


ensembl_gene_id: Amir_5081
symbol: Amir_5081
gene_biotype: protein_coding
description:
  PFAM: Carboxymuconolactone decarboxylase; KEGG: mlo:mlr7207 gamma carboxymuconolactone decarboxylase.


ensembl_gene_id: Amir_5083
symbol: Amir_5083
gene_biotype: protein_coding
description:
  TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; KEGG: swi:Swit_0978 3-oxoadipate enol-lactonase.


ensembl_gene_id: Amir_5084
symbol: Amir_5084
gene_biotype: protein_coding
description:
  KEGG: reh:H16_B2290 protocatechuate 3,4-dioxygenase alpha chain; TIGRFAM: protocatechuate 3,4-dioxygenase, alpha subunit; PFAM: intradiol ring-cleavage dioxygenase.


ensembl_gene_id: Amir_5085
symbol: Amir_5085
gene_biotype: protein_coding
description:
  KEGG: pfo:Pfl01_1270 protocatechuate 3,4- dioxygenase, beta subunit; TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit; PFAM: intradiol ring-cleavage dioxygenase.


ensembl_gene_id: Amir_5086
symbol: Amir_5086
gene_biotype: protein_coding
description:
  Glutaconate CoA-transferase; PFAM: coenzyme A transferase; KEGG: xcv:XCV0379 glutaconate CoA transferase subunit B.


ensembl_gene_id: Amir_5090
symbol: Amir_5090
gene_biotype: protein_coding
description:
  PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: gsu:GSU0700 sensory box/response regulator.


ensembl_gene_id: Amir_5091
symbol: Amir_5091
gene_biotype: protein_coding
description:
  KEGG: ank:AnaeK_4253 GAF sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; GAF domain protein; histidine kinase HAMP region domain protein.


ensembl_gene_id: Amir_5093
symbol: Amir_5093
gene_biotype: protein_coding
description:
  Putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: met:M446_2753 signal transduction histidine kinase.


ensembl_gene_id: Amir_5095
symbol: Amir_5095
gene_biotype: protein_coding
description:
  Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sus:Acid_2843 anti-sigma-factor antagonist.


ensembl_gene_id: Amir_5102
symbol: Amir_5102
gene_biotype: protein_coding
description:
  KEGG: vei:Veis_1391 periplasmic binding protein/LacI transcriptional regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI.


ensembl_gene_id: Amir_5104
symbol: Amir_5104
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: pag:PLES_17341 putative short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Amir_5110
symbol: Amir_5110
gene_biotype: protein_coding
description:
  PFAM: CsbD family protein; KEGG: pen:PSEEN4005 hypothetical protein; Belongs to the UPF0337 (CsbD) family.


ensembl_gene_id: Amir_5112
symbol: Amir_5112
gene_biotype: protein_coding
description:
  KEGG: gsu:GSU2358 isoamylase family protein; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.


ensembl_gene_id: Amir_5113
symbol: Amir_5113
gene_biotype: protein_coding
description:
  Malto-oligosyltrehalose synthase; KEGG: reu:Reut_B4234 alpha amylase domain- containing protein; TIGRFAM: malto-oligosyltrehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.


ensembl_gene_id: Amir_5114
symbol: Amir_5114
gene_biotype: protein_coding
description:
  KEGG: nmu:Nmul_A1401 glycogen debranching protein GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.


ensembl_gene_id: Amir_5116
symbol: Amir_5116
gene_biotype: protein_coding
description:
  4-alpha-glucanotransferase; KEGG: bpt:Bpet2366 hypothetical protein; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77.


ensembl_gene_id: Amir_5117
symbol: Amir_5117
gene_biotype: protein_coding
description:
  Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: sme:SM_b20014 putative transcriptional regulator protein.


ensembl_gene_id: Amir_5118
symbol: Amir_5118
gene_biotype: protein_coding
description:
  PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: afw:Anae109_2778 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.


ensembl_gene_id: Amir_5119
symbol: Amir_5119
gene_biotype: protein_coding
description:
  PFAM: Luciferase-like monooxygenase; KEGG: pzu:PHZ_c2545 5,10- methylenetetrahydromethanopterin reductase.


ensembl_gene_id: Amir_5121
symbol: Amir_5121
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: rce:RC1_2700 penicillin-binding protein, 1A family.


ensembl_gene_id: Amir_5123
symbol: Amir_5123
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: pla:Plav_0951 ECF subfamily RNA polymerase sigma-24 factor.


ensembl_gene_id: Amir_5127
symbol: Amir_5127
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: ade:Adeh_2212 LysR family transcriptional regulator.


ensembl_gene_id: Amir_5128
symbol: Amir_5128
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mlo:mll2997 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Amir_5129
symbol: Amir_5129
gene_biotype: protein_coding
description:
  Transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; regulatory protein GntR HTH; SMART: regulatory protein DeoR; KEGG: aba:Acid345_0659 transcriptional regulator, DeoR family.


ensembl_gene_id: Amir_5131
symbol: Amir_5131
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: sat:SYN_01564 phospholipid-lipopolysaccharide ABC transporter.


ensembl_gene_id: Amir_5132
symbol: Amir_5132
gene_biotype: protein_coding
description:
  PFAM: Enoyl-CoA hydratase/isomerase; KEGG: dal:Dalk_3354 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: Amir_5134
symbol: Amir_5134
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: scl:sce6041 ABC transporter, ATP-binding protein.


ensembl_gene_id: Amir_5135
symbol: Amir_5135
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pzu:PHZ_c3135 oxidoreductase, short-chain dehydrogenase/reductase family.


ensembl_gene_id: Amir_5137
symbol: Amir_5137
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: xau:Xaut_1595 ECF subfamily RNA polymerase sigma-24 factor.


ensembl_gene_id: Amir_5143
symbol: Amir_5143
gene_biotype: protein_coding
description:
  Putative integral membrane sensor protein; PFAM: MASE1 domain protein; KEGG: sse:Ssed_3344 signal transduction protein.


ensembl_gene_id: Amir_5144
symbol: Amir_5144
gene_biotype: protein_coding
description:
  TIGRFAM: lycopene cyclase family protein; PFAM: Lycopene beta and epsilon cyclase; KEGG: hypothetical protein; K06443 lycopene beta cyclase.


ensembl_gene_id: Amir_5145
symbol: Amir_5145
gene_biotype: protein_coding
description:
  KEGG: cti:RALTA_B1157 putative diguanylate cyclase (GGDEF domain) and C-di-GMP phosphodiesterase (EAL domain)); TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein.


ensembl_gene_id: Amir_5147
symbol: Amir_5147
gene_biotype: protein_coding
description:
  Putative signal transduction protein with CBS domains; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: bph:Bphy_4760 CBS domain-containing protein.


ensembl_gene_id: Amir_5148
symbol: Amir_5148
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF59; KEGG: eli:ELI_12745 metal-sulfur cluster biosynthetic enzyme.


ensembl_gene_id: Amir_5149
symbol: Amir_5149
gene_biotype: protein_coding
description:
  TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: bsu:BSU32680 hypothetical protein.


ensembl_gene_id: Amir_5150
symbol: Amir_5150
gene_biotype: protein_coding
description:
  Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.


ensembl_gene_id: Amir_5151
symbol: Amir_5151
gene_biotype: protein_coding
description:
  FeS assembly ATPase SufC; KEGG: bat:BAS4851 ABC transporter, ATP-binding protein; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Amir_5152
symbol: Amir_5152
gene_biotype: protein_coding
description:
  PFAM: Rieske [2Fe-2S] domain protein; KEGG: bmn:BMA10247_A0236 aromatic-ring- hydroxylating dioxygenase, ferredoxin subunit.


ensembl_gene_id: Amir_5153
symbol: Amir_5153
gene_biotype: protein_coding
description:
  TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: mxa:MXAN_1155 FeS assembly protein SufD.


ensembl_gene_id: Amir_5154
symbol: Amir_5154
gene_biotype: protein_coding
description:
  TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: bcz:BCZK4703 iron-regulated ABC transporter.


ensembl_gene_id: Amir_5155
symbol: Amir_5155
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; PFAM: Helix-turn-helix type 11 domain protein; KEGG: ypk:y4095 hypothetical protein.


ensembl_gene_id: Amir_5156
symbol: Amir_5156
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mxa:MXAN_0865 oxidoreductase, short chain dehydrogenase/reductase family.


ensembl_gene_id: Amir_5161
symbol: Amir_5161
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: dvm:DvMF_2468 molybdopterin-containing oxidoreductase membrane anchor subunit.


ensembl_gene_id: Amir_5162
symbol: Amir_5162
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mxa:MXAN_1597 ABC transporter, ATP-binding protein.


ensembl_gene_id: Amir_5166
symbol: Amir_5166
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: pfo:Pfl01_4833 chemotaxis sensory transducer; Belongs to the WXG100 family.


ensembl_gene_id: Amir_5172
symbol: Amir_5172
gene_biotype: protein_coding
description:
  Putative sensor with HAMP domain; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: rpe:RPE_2275 peptidase C14, caspase catalytic subunit P20.


ensembl_gene_id: Amir_5174
symbol: Amir_5174
gene_biotype: protein_coding
description:
  TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: dvm:DvMF_0315 SSS sodium solute transporter superfamily; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: Amir_5178
symbol: Amir_5178
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bte:BTH_II0233 quinone oxidoreductase.


ensembl_gene_id: Amir_5179
symbol: Amir_5179
gene_biotype: protein_coding
description:
  PFAM: peptidylprolyl isomerase FKBP-type; KEGG: scl:sce3796 FKBP-type peptidyl-prolyl cis- trans isomerase.


ensembl_gene_id: Amir_5183
symbol: Amir_5183
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: mno:Mnod_5360 RNA polymerase, sigma-24 subunit, ECF subfamily.


ensembl_gene_id: Amir_5185
symbol: ctaB
gene_biotype: protein_coding
description:
  Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.


ensembl_gene_id: Amir_5186
symbol: Amir_5186
gene_biotype: protein_coding
description:
  Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.


ensembl_gene_id: Amir_5187
symbol: tal
gene_biotype: protein_coding
description:
  Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.


ensembl_gene_id: Amir_5189
symbol: zwf
gene_biotype: protein_coding
description:
  Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.


ensembl_gene_id: Amir_5195
symbol: rbpA-2
gene_biotype: protein_coding
description:
  Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.


ensembl_gene_id: Amir_5196
symbol: Amir_5196
gene_biotype: protein_coding
description:
  Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.


ensembl_gene_id: Amir_5197
symbol: tpiA
gene_biotype: protein_coding
description:
  Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.


ensembl_gene_id: Amir_5198
symbol: pgk
gene_biotype: protein_coding
description:
  PFAM: phosphoglycerate kinase; KEGG: bsu:BSU33930 phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.


ensembl_gene_id: Amir_5199
symbol: Amir_5199
gene_biotype: protein_coding
description:
  KEGG: bha:BH3560 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.


ensembl_gene_id: Amir_5204
symbol: Amir_5204
gene_biotype: protein_coding
description:
  Protein of unknown function UPF0052 and CofD; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.


ensembl_gene_id: Amir_5206
symbol: uvrC
gene_biotype: protein_coding
description:
  Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.


ensembl_gene_id: Amir_5207
symbol: Amir_5207
gene_biotype: protein_coding
description:
  PFAM: Rieske [2Fe-2S] domain protein; KEGG: bxe:Bxe_B1329 putative dioxygenase, ferredoxin reductase component.


ensembl_gene_id: Amir_5214
symbol: Amir_5214
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: pca:Pcar_3124 RNA polymerase, sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Amir_5217
symbol: ribH
gene_biotype: protein_coding
description:
  6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.


ensembl_gene_id: Amir_5218
symbol: ribBA
gene_biotype: protein_coding
description:
  3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.


ensembl_gene_id: Amir_5219
symbol: Amir_5219
gene_biotype: protein_coding
description:
  TIGRFAM: riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein; KEGG: hap:HAPS_1135 riboflavin synthase subunit alpha.


ensembl_gene_id: Amir_5220
symbol: Amir_5220
gene_biotype: protein_coding
description:
  KEGG: sat:SYN_01763 ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Orotidine 5'- phosphate decarboxylase; Belongs to the ribulose-phosphate 3-epimerase family.


ensembl_gene_id: Amir_5222
symbol: Amir_5222
gene_biotype: protein_coding
description:
  PFAM: flavoprotein; KEGG: xau:Xaut_0078 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase.


ensembl_gene_id: Amir_5223
symbol: Amir_5223
gene_biotype: protein_coding
description:
  PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: ade:Adeh_3970 NusB/RsmB/TIM44 family protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.


ensembl_gene_id: Amir_5224
symbol: fmt
gene_biotype: protein_coding
description:
  methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.


ensembl_gene_id: Amir_5228
symbol: Amir_5228
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: pla:Plav_1868 RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Amir_5230
symbol: Amir_5230
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; KEGG: pzu:PHZ_c1529 RNA polymerase sigma-70 factor,ECF subfamily.


ensembl_gene_id: Amir_5232
symbol: Amir_5232
gene_biotype: protein_coding
description:
  KEGG: scl:sce1211 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase.


ensembl_gene_id: Amir_5234
symbol: priA
gene_biotype: protein_coding
description:
  Primosomal protein N' (replication factor Y) - superfamily II helicase-like protein; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.


ensembl_gene_id: Amir_5236
symbol: Amir_5236
gene_biotype: protein_coding
description:
  Phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.


ensembl_gene_id: Amir_5237
symbol: rpoZ
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.


ensembl_gene_id: Amir_5240
symbol: pyrF
gene_biotype: protein_coding
description:
  TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: mxa:MXAN_5910 orotidine 5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily.


ensembl_gene_id: Amir_5241
symbol: carB
gene_biotype: protein_coding
description:
  TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; RimK domain protein ATP-grasp; MGS domain protein; ATP-grasp domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl- phosphate synthetase large chain domain protein; KEGG: gur:Gura_1864 carbamoyl-phosphate synthase, large subunit; Belongs to the CarB family.


ensembl_gene_id: Amir_5242
symbol: carA
gene_biotype: protein_coding
description:
  KEGG: smt:Smal_1811 carbamoyl-phosphate synthase, small subunit; TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; Belongs to the CarA family.


ensembl_gene_id: Amir_5245
symbol: pyrB
gene_biotype: protein_coding
description:
  TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; KEGG: scl:sce3822 hypothetical protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.


ensembl_gene_id: Amir_5246
symbol: pyrR
gene_biotype: protein_coding
description:
  Uracil phosphoribosyltransferase; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant.


ensembl_gene_id: Amir_5247
symbol: Amir_5247
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: pzu:PHZ_c2067 transcriptional regulator, Cro/CI family.


ensembl_gene_id: Amir_5248
symbol: nusB
gene_biotype: protein_coding
description:
  NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.


ensembl_gene_id: Amir_5249
symbol: efp
gene_biotype: protein_coding
description:
  Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.


ensembl_gene_id: Amir_5252
symbol: aroQ-3
gene_biotype: protein_coding
description:
  3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.


ensembl_gene_id: Amir_5253
symbol: aroB
gene_biotype: protein_coding
description:
  3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).


ensembl_gene_id: Amir_5254
symbol: aroK
gene_biotype: protein_coding
description:
  Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.


ensembl_gene_id: Amir_5255
symbol: aroC
gene_biotype: protein_coding
description:
  Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.


ensembl_gene_id: Amir_5256
symbol: Amir_5256
gene_biotype: protein_coding
description:
  PFAM: peptidase A24A prepilin type IV; KEGG: hha:Hhal_2022 prepilin peptidase; Belongs to the peptidase A24 family.


ensembl_gene_id: Amir_5257
symbol: Amir_5257
gene_biotype: protein_coding
description:
  TIGRFAM: PTS system, glucose subfamily, IIA subunit; PFAM: sugar-specific permease EIIA 1 domain; KEGG: bsu:BSU39270 phosphotransferase system (PTS) beta-glucoside-specific enzyme IIBCA component.


ensembl_gene_id: Amir_5259
symbol: Amir_5259
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bha:BH0419 GntR family transcriptional regulator.


ensembl_gene_id: Amir_5260
symbol: Amir_5260
gene_biotype: protein_coding
description:
  PFAM: phosphotransferase system EIIC; KEGG: bha:BH0422 PTS system, N-acetylglucosamine- specific enzyme II, ABC component.


ensembl_gene_id: Amir_5261
symbol: Amir_5261
gene_biotype: protein_coding
description:
  Phosphotransferase system, phosphocarrier protein HPr; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: aeh:Mlg_2234 HPr family phosphocarrier protein.


ensembl_gene_id: Amir_5262
symbol: Amir_5262
gene_biotype: protein_coding
description:
  TIGRFAM: shikimate-5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase; KEGG: nha:Nham_1109 shikimate 5-dehydrogenase; Belongs to the shikimate dehydrogenase family.


ensembl_gene_id: Amir_5263
symbol: mltG
gene_biotype: protein_coding
description:
  Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.


ensembl_gene_id: Amir_5264
symbol: Amir_5264
gene_biotype: protein_coding
description:
  Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.


ensembl_gene_id: Amir_5265
symbol: alaS
gene_biotype: protein_coding
description:
  alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.


ensembl_gene_id: Amir_5269
symbol: Amir_5269
gene_biotype: protein_coding
description:
  PFAM: Cupin 4 family protein; SMART: transcription factor jumonji jmjC domain protein; KEGG: jan:Jann_0385 cupin 4.


ensembl_gene_id: Amir_5271
symbol: Amir_5271
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: sfu:Sfum_2834 methyltransferase type 12.


ensembl_gene_id: Amir_5272
symbol: Amir_5272
gene_biotype: protein_coding
description:
  PFAM: AAA ATPase central domain protein; magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: gsu:GSU2067 recombination factor protein RarA.


ensembl_gene_id: Amir_5274
symbol: Amir_5274
gene_biotype: protein_coding
description:
  PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase; helicase domain protein; KEGG: scl:sce4364 putative ATP-dependent helicase.


ensembl_gene_id: Amir_5275
symbol: Amir_5275
gene_biotype: protein_coding
description:
  Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; TPR repeat- containing protein; NB-ARC domain protein; transcriptional regulator domain protein; SMART: AAA ATPase; Tetratricopeptide domain protein; KEGG: scl:sce5225 protein kinase.


ensembl_gene_id: Amir_5276
symbol: Amir_5276
gene_biotype: protein_coding
description:
  PFAM: Transglycosylase domain protein; Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: ade:Adeh_2701 peptidoglycan-binding LysM.


ensembl_gene_id: Amir_5278
symbol: Amir_5278
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: rpi:Rpic_1227 two component transcriptional regulator, LytTR family.


ensembl_gene_id: Amir_5280
symbol: Amir_5280
gene_biotype: protein_coding
description:
  PFAM: Na+/solute symporter; KEGG: ade:Adeh_3696 SSS family solute/sodium (Na+) symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: Amir_5281
symbol: Amir_5281
gene_biotype: protein_coding
description:
  Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; GAF domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: gme:Gmet_2698 histidine kinase internal region.


ensembl_gene_id: Amir_5286
symbol: Amir_5286
gene_biotype: protein_coding
description:
  PFAM: 4'-phosphopantetheinyl transferase; KEGG: gdi:GDI2832 putative phosphopantetheinyl transferase PptA; Belongs to the P-Pant transferase superfamily.


ensembl_gene_id: Amir_5294
symbol: idi
gene_biotype: protein_coding
description:
  Isopentenyl-diphosphate delta-isomerase, type 1; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).


ensembl_gene_id: Amir_5296
symbol: Amir_5296
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rlt:Rleg2_1533 methyltransferase type 12.


ensembl_gene_id: Amir_5297
symbol: Amir_5297
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: bxe:Bxe_C1266 putative alcohol dehydrogenase.


ensembl_gene_id: Amir_5298
symbol: Amir_5298
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: mmw:Mmwyl1_2496 helix-turn-helix domain- containing protein.


ensembl_gene_id: Amir_5302
symbol: Amir_5302
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: Trpm4; transient receptor potential cation channel, subfamily M, member 4; K04979 transient receptor potential cation channel, subfamily M, member 4.


ensembl_gene_id: Amir_5306
symbol: Amir_5306
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: scl:sce9297 putative zinc-binding dehydrogenase.


ensembl_gene_id: Amir_5307
symbol: Amir_5307
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gdi:GDI2636 putative transporter protein.


ensembl_gene_id: Amir_5308
symbol: Amir_5308
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_2642 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Amir_5309
symbol: Amir_5309
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: bac:BamMC406_2511 extracellular solute- binding protein.


ensembl_gene_id: Amir_5313
symbol: Amir_5313
gene_biotype: protein_coding
description:
  PFAM: Lanthionine synthetase C family protein; KEGG: mxa:MXAN_6388 lanthionine synthetase C family protein.


ensembl_gene_id: Amir_5315
symbol: Amir_5315
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: ade:Adeh_3289 SARP family transcriptional regulator.


ensembl_gene_id: Amir_5320
symbol: Amir_5320
gene_biotype: protein_coding
description:
  TIGRFAM: phenylacetic acid degradation protein paaN; PFAM: MaoC domain protein dehydratase; Aldehyde Dehydrogenase; KEGG: pde:Pden_4804 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase.


ensembl_gene_id: Amir_5321
symbol: Amir_5321
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 16; Ricin B lectin; SMART: Ricin B lectin; KEGG: cja:CJA_2759 beta glucanase, putative, glu16F.


ensembl_gene_id: Amir_5323
symbol: Amir_5323
gene_biotype: protein_coding
description:
  Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; TPR repeat- containing protein; Tetratricopeptide TPR_4; NB-ARC domain protein; transcriptional regulator domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: scl:sce6858 hypothetical protein.


ensembl_gene_id: Amir_5328
symbol: Amir_5328
gene_biotype: protein_coding
description:
  Putative transcriptional regulator, PucR family; KEGG: bxe:Bxe_B2117 CdaR family transcriptional regulator.


ensembl_gene_id: Amir_5331
symbol: Amir_5331
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; KEGG: acp:A2cp1_1649 NAD-dependent epimerase/dehydratase.


ensembl_gene_id: Amir_5334
symbol: Amir_5334
gene_biotype: protein_coding
description:
  PFAM: chitin-binding domain 3 protein; Carbohydrate- binding family V/XII; SMART: Carbohydrate-binding family V/XII; KEGG: hypothetical protein.


ensembl_gene_id: Amir_5339
symbol: Amir_5339
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 9; cellulose- binding family II; glycoside hydrolase family 9 domain protein Ig domain protein; Carbohydrate-binding CenC domain protein; SMART: cellulose-binding family II; KEGG: scl:sce2234 cellulase.


ensembl_gene_id: Amir_5340
symbol: Amir_5340
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: psa:PST_1446 oxidoreductase, short-chain dehydrogenase/reductase family.


ensembl_gene_id: Amir_5343
symbol: Amir_5343
gene_biotype: protein_coding
description:
  KEGG: pzu:PHZ_c2158 transcriptional regulator, LacI family; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI.


ensembl_gene_id: Amir_5344
symbol: Amir_5344
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: pde:Pden_3115 protein of unknown function DUF21.


ensembl_gene_id: Amir_5345
symbol: Amir_5345
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF21; CBS domain containing protein; KEGG: hps:HPSH_07635 hypothetical protein.


ensembl_gene_id: Amir_5350
symbol: Amir_5350
gene_biotype: protein_coding
description:
  Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: mlo:mlr0745 transcriptional regulator.


ensembl_gene_id: Amir_5352
symbol: gcvP
gene_biotype: protein_coding
description:
  Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.


ensembl_gene_id: Amir_5355
symbol: Amir_5355
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: ade:Adeh_3310 zinc finger/thioredoxin putative.


ensembl_gene_id: Amir_5356
symbol: Amir_5356
gene_biotype: protein_coding
description:
  FHA domain containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: scl:sce2902 GGDEF domain-containing protein.


ensembl_gene_id: Amir_5357
symbol: gcvH
gene_biotype: protein_coding
description:
  Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.


ensembl_gene_id: Amir_5358
symbol: Amir_5358
gene_biotype: protein_coding
description:
  PFAM: CDP-alcohol phosphatidyltransferase; KEGG: tmz:Tmz1t_2031 CDP-diacylglycerol/glycerol-3- phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: Amir_5360
symbol: Amir_5360
gene_biotype: protein_coding
description:
  Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: mag:amb0333 anti-anti-sigma regulatory factor; Belongs to the anti-sigma-factor antagonist family.


ensembl_gene_id: Amir_5361
symbol: Amir_5361
gene_biotype: protein_coding
description:
  Putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: dvm:DvMF_0253 putative signal transduction histidine kinase.


ensembl_gene_id: Amir_5362
symbol: Amir_5362
gene_biotype: protein_coding
description:
  Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: bsu:BSU04720 serine-protein kinase RsbW.


ensembl_gene_id: Amir_5363
symbol: Amir_5363
gene_biotype: protein_coding
description:
  TIGRFAM: RNA polymerase sigma-70 factor, sigma- B/F/G subfamily; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; Sigma-70 region 4 type 2; sigma- 70 region 4 domain protein; KEGG: bha:BH0529 RNA polymerase sigma factor SigB.


ensembl_gene_id: Amir_5370
symbol: Amir_5370
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: rpb:RPB_0486 RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Amir_5372
symbol: Amir_5372
gene_biotype: protein_coding
description:
  PFAM: transcriptional regulator PadR family protein; KEGG: rpt:Rpal_2803 transcriptional regulator, PadR- like family.


ensembl_gene_id: Amir_5374
symbol: Amir_5374
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerization and phosphoacceptor region; SMART: ATP-binding region ATPase domain protein; KEGG: oca:OCAR_4624 signal transduction histidine kinase containing PAS/PAC sensor domain.


ensembl_gene_id: Amir_5375
symbol: Amir_5375
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: bcr:BCAH187_A1601 DNA-binding response regulator.


ensembl_gene_id: Amir_5384
symbol: Amir_5384
gene_biotype: protein_coding
description:
  TIGRFAM: Rhs element Vgr protein; PFAM: Rhs element Vgr protein; KEGG: dsh:Dshi_2462 rhs element Vgr protein.


ensembl_gene_id: Amir_5385
symbol: Amir_5385
gene_biotype: protein_coding
description:
  PFAM: Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: sde:Sde_1041 hypothetical protein.


ensembl_gene_id: Amir_5395
symbol: Amir_5395
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.


ensembl_gene_id: Amir_5399
symbol: Amir_5399
gene_biotype: protein_coding
description:
  TIGRFAM: RNA polymerase sigma-70 factor, sigma- B/F/G subfamily; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma- 70 region 3 domain protein; KEGG: bha:BH0529 RNA polymerase sigma factor SigB.


ensembl_gene_id: Amir_5408
symbol: Amir_5408
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: mxa:MXAN_3338 serine/threonine protein kinase.


ensembl_gene_id: Amir_5411
symbol: Amir_5411
gene_biotype: protein_coding
description:
  PFAM: Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: sus:Acid_3454 tetratricopeptide TPR_4.


ensembl_gene_id: Amir_5412
symbol: Amir_5412
gene_biotype: protein_coding
description:
  PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: ade:Adeh_0234 peptidase S8 and S53, subtilisin, kexin, sedolisin.


ensembl_gene_id: Amir_5413
symbol: Amir_5413
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: sus:Acid_3455 ECF subfamily RNA polymerase sigma-24 factor.


ensembl_gene_id: Amir_5415
symbol: Amir_5415
gene_biotype: protein_coding
description:
  Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: azo:azo0950 GGEF/EAL/PAS/PAC-domain- containing protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAC repeat- containing protein.


ensembl_gene_id: Amir_5416
symbol: Amir_5416
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function ATP binding; Miro domain protein; KEGG: dac:Daci_0776 protein of unknown function ATP binding.


ensembl_gene_id: Amir_5418
symbol: Amir_5418
gene_biotype: protein_coding
description:
  Putative sensor with HAMP domain; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: dvm:DvMF_1114 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: Amir_5419
symbol: Amir_5419
gene_biotype: protein_coding
description:
  PFAM: NMT1/THI5 like domain protein; KEGG: bbt:BBta_5981 ABC transporter substrate- binding protein.


ensembl_gene_id: Amir_5420
symbol: Amir_5420
gene_biotype: protein_coding
description:
  4-hydroxybenzoate 3-monooxygenase; PFAM: monooxygenase FAD-binding; KEGG: mno:Mnod_7086 4-hydroxybenzoate 3- monooxygenase.


ensembl_gene_id: Amir_5422
symbol: Amir_5422
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ABC transporter, permease protein.


ensembl_gene_id: Amir_5423
symbol: Amir_5423
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_1369 ABC transporter membrane protein.


ensembl_gene_id: Amir_5425
symbol: Amir_5425
gene_biotype: protein_coding
description:
  PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: sat:SYN_02856 RNA pseudouridylate synthase S4 domain-containing protein; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: Amir_5426
symbol: Amir_5426
gene_biotype: protein_coding
description:
  Chromosome segregation and condensation protein, ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: Amir_5427
symbol: Amir_5427
gene_biotype: protein_coding
description:
  Chromosome segregation and condensation protein ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: Amir_5429
symbol: Amir_5429
gene_biotype: protein_coding
description:
  PFAM: Cobyrinic acid ac-diamide synthase; KEGG: bcb:BCB4264_A5607 sporulation initiation inhibitor protein Soj.


ensembl_gene_id: Amir_5430
symbol: Amir_5430
gene_biotype: protein_coding
description:
  Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: bca:BCE_2079 ArsR family transcriptional regulator.


ensembl_gene_id: Amir_5431
symbol: xerD
gene_biotype: protein_coding
description:
  Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: Amir_5432
symbol: Amir_5432
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1707; TM2 domain containing protein?; KEGG: scl:sce7607 TM2 domain-containing protein.


ensembl_gene_id: Amir_5435
symbol: pyrG
gene_biotype: protein_coding
description:
  CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.


ensembl_gene_id: Amir_5440
symbol: nadK
gene_biotype: protein_coding
description:
  NAD(+) kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.


ensembl_gene_id: Amir_5441
symbol: Amir_5441
gene_biotype: protein_coding
description:
  KEGG: acp:A2cp1_1226 hemolysin A; TIGRFAM: hemolysin A; PFAM: RNA-binding S4 domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; SMART: RNA-binding S4 domain protein.


ensembl_gene_id: Amir_5443
symbol: Amir_5443
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bat:BAS4827 phosphatase; Belongs to the HAD-like hydrolase superfamily.


ensembl_gene_id: Amir_5445
symbol: tyrS
gene_biotype: protein_coding
description:
  tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.


ensembl_gene_id: Amir_5447
symbol: Amir_5447
gene_biotype: protein_coding
description:
  Putative signal transduction protein with EFhand domain; PFAM: Calcium-binding EF-hand-containing protein; SMART: Calcium-binding EF-hand-containing protein; KEGG: Scp2; Sarcoplasmic calcium-binding protein 2.


ensembl_gene_id: Amir_5448
symbol: Amir_5448
gene_biotype: protein_coding
description:
  TIGRFAM: DNA-3-methyladenine glycosylase; PFAM: methylpurine-DNA glycosylase (MPG); KEGG: bmu:Bmul_0540 3-methyladenine DNA glycosylase; Belongs to the DNA glycosylase MPG family.


ensembl_gene_id: Amir_5449
symbol: argH
gene_biotype: protein_coding
description:
  TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: bac:BamMC406_6164 argininosuccinate lyase.


ensembl_gene_id: Amir_5452
symbol: arcB
gene_biotype: protein_coding
description:
  Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.


ensembl_gene_id: Amir_5453
symbol: argD
gene_biotype: protein_coding
description:
  TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: acp:A2cp1_2878 acetylornithine and succinylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.


ensembl_gene_id: Amir_5454
symbol: argB
gene_biotype: protein_coding
description:
  Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.


ensembl_gene_id: Amir_5455
symbol: argJ
gene_biotype: protein_coding
description:
  Arginine biosynthesis bifunctional protein ArgJ; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.


ensembl_gene_id: Amir_5456
symbol: argC
gene_biotype: protein_coding
description:
  N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.


ensembl_gene_id: Amir_5457
symbol: Amir_5457
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: scl:sce1535 alcohol dehydrogenase.


ensembl_gene_id: Amir_5460
symbol: Amir_5460
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: mmr:Mmar10_0512 XRE family transcriptional regulator.


ensembl_gene_id: Amir_5462
symbol: Amir_5462
gene_biotype: protein_coding
description:
  PFAM: pyridine nucleotide-disulphide oxidoreductase dimerization region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; KEGG: aba:Acid345_3223 soluble pyridine nucleotide transhydrogenase.


ensembl_gene_id: Amir_5464
symbol: pheT
gene_biotype: protein_coding
description:
  KEGG: pca:Pcar_1423 phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit.


ensembl_gene_id: Amir_5465
symbol: pheS
gene_biotype: protein_coding
description:
  TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; KEGG: cja:CJA_2526 phenylalanyl-tRNA synthetase, alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.


ensembl_gene_id: Amir_5466
symbol: Amir_5466
gene_biotype: protein_coding
description:
  PFAM: ATP-binding region ATPase domain protein; KEGG: mxa:MXAN_1393 ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein.


ensembl_gene_id: Amir_5467
symbol: Amir_5467
gene_biotype: protein_coding
description:
  PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: mxa:MXAN_1392 hypothetical protein.


ensembl_gene_id: Amir_5469
symbol: Amir_5469
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: psa:PST_4043 sensor histidine kinase TctE, putative.


ensembl_gene_id: Amir_5470
symbol: Amir_5470
gene_biotype: protein_coding
description:
  PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: ret:RHE_CH00393 rRNA methylase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: Amir_5471
symbol: rplT
gene_biotype: protein_coding
description:
  Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.


ensembl_gene_id: Amir_5472
symbol: rpmI
gene_biotype: protein_coding
description:
  TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: aba:Acid345_0714 LSU ribosomal protein L35P; Belongs to the bacterial ribosomal protein bL35 family.


ensembl_gene_id: Amir_5473
symbol: infC
gene_biotype: protein_coding
description:
  Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.


ensembl_gene_id: Amir_5476
symbol: Amir_5476
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; NB-ARC domain protein; SMART: helix-turn-helix domain protein; AAA ATPase; KEGG: scl:sce5225 protein kinase.


ensembl_gene_id: Amir_5477
symbol: Amir_5477
gene_biotype: protein_coding
description:
  TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: mmw:Mmwyl1_4387 putative endoribonuclease L- PSP.


ensembl_gene_id: Amir_5478
symbol: Amir_5478
gene_biotype: protein_coding
description:
  PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: bha:BH2137 IclR family transcriptional regulator.


ensembl_gene_id: Amir_5481
symbol: Amir_5481
gene_biotype: protein_coding
description:
  N-acyl-D-amino-acid deacylase; PFAM: Amidohydrolase 3; D-aminoacylase domain protein; amidohydrolase; KEGG: hypothetical protein.


ensembl_gene_id: Amir_5482
symbol: Amir_5482
gene_biotype: protein_coding
description:
  TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: oan:Oant_4271 gluconate transporter.


ensembl_gene_id: Amir_5483
symbol: uvrA
gene_biotype: protein_coding
description:
  Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.


ensembl_gene_id: Amir_5490
symbol: Amir_5490
gene_biotype: protein_coding
description:
  Putative transcriptional regulator, GntR family; PFAM: aminotransferase class I and II; KEGG: mxa:MXAN_0212 aminotransferase, class I and II family protein.


ensembl_gene_id: Amir_5491
symbol: Amir_5491
gene_biotype: protein_coding
description:
  Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: bpt:Bpet3500 ArsR family transcriptional regulator.


ensembl_gene_id: Amir_5492
symbol: Amir_5492
gene_biotype: protein_coding
description:
  PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: ank:AnaeK_2658 activator of HSP90 ATPase 1 family protein.


ensembl_gene_id: Amir_5494
symbol: Amir_5494
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: cti:RALTA_B0884 putative transcriptional regulator, AraC family, isolated domain.


ensembl_gene_id: Amir_5500
symbol: Amir_5500
gene_biotype: protein_coding
description:
  PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: acp:A2cp1_3940 TPR repeat-containing protein.


ensembl_gene_id: Amir_5502
symbol: Amir_5502
gene_biotype: protein_coding
description:
  PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: peptidase S1 and S6 chymotrypsin/Hap; KEGG: AGAP008296-PA.


ensembl_gene_id: Amir_5511
symbol: Amir_5511
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: dal:Dalk_5197 transcriptional regulator, Crp/Fnr family.


ensembl_gene_id: Amir_5512
symbol: Amir_5512
gene_biotype: protein_coding
description:
  PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; dienelactone hydrolase; WD40 domain protein beta Propeller; Acetyl xylan esterase; KEGG: bsu:BSU32230 hypothetical protein.


ensembl_gene_id: Amir_5514
symbol: Amir_5514
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; peptidase S15; alpha/beta hydrolase fold; SMART: AAA ATPase; KEGG: bcz:BCZK3372 bacitracin ABC transporter, ATP- binding protein.


ensembl_gene_id: Amir_5516
symbol: uvrB
gene_biotype: protein_coding
description:
  Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]


ensembl_gene_id: Amir_5520
symbol: coaE
gene_biotype: protein_coding
description:
  dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.


ensembl_gene_id: Amir_5522
symbol: Amir_5522
gene_biotype: protein_coding
description:
  PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; KEGG: dal:Dalk_0933 ribosomal protein S1.


ensembl_gene_id: Amir_5523
symbol: Amir_5523
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ank:AnaeK_1219 methyltransferase type 11.


ensembl_gene_id: Amir_5526
symbol: Amir_5526
gene_biotype: protein_coding
description:
  TIGRFAM: YhgE/Pip C-terminal domain protein; YhgE/Pip N-terminal domain protein; PFAM: ABC-2 type transporter; KEGG: bce:BC5221 phage infection protein.


ensembl_gene_id: Amir_5530
symbol: Amir_5530
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: NAD binding Rossmann fold oxidoreductase; K00540.


ensembl_gene_id: Amir_5532
symbol: polA
gene_biotype: protein_coding
description:
  DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.


ensembl_gene_id: Amir_5535
symbol: Amir_5535
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gbm:Gbem_1946 ABC transporter related protein.


ensembl_gene_id: Amir_5536
symbol: Amir_5536
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bmj:BMULJ_02460 branched-chain amino acid transport system ATP-binding protein.


ensembl_gene_id: Amir_5537
symbol: Amir_5537
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: bbr:BB2027 putative ABC transport protein, ATP-binding component; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Amir_5538
symbol: Amir_5538
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: cvi:CV_1503 leucine/isoleucine/valine transport system permease protein.


ensembl_gene_id: Amir_5540
symbol: Amir_5540
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; ANTAR domain protein; SMART: response regulator receiver; KEGG: gme:Gmet_0660 response regulator receiver/ANTAR domain-containing protein.


ensembl_gene_id: Amir_5547
symbol: Amir_5547
gene_biotype: protein_coding
description:
  Putative signal transduction protein with Nacht domain; KEGG: disease resistance-responsive family protein.


ensembl_gene_id: Amir_5549
symbol: Amir_5549
gene_biotype: protein_coding
description:
  KEGG: bpt:Bpet0900 DNA helicase; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP- dependent DNA helicase, RecQ family; PFAM: DEAD/DEAH box helicase domain protein; HRDC domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; HRDC domain protein.


ensembl_gene_id: Amir_5574
symbol: Amir_5574
gene_biotype: protein_coding
description:
  PFAM: C-5 cytosine-specific DNA methylase; KEGG: vei:Veis_3654 C-5 cytosine-specific DNA methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.


ensembl_gene_id: Amir_5583
symbol: Amir_5583
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: pzu:PHZ_c2649 5-methyltetrahydrofolate-- homocysteine methyltransferase.


ensembl_gene_id: Amir_5590
symbol: Amir_5590
gene_biotype: protein_coding
description:
  PFAM: membrane-bound metal-dependent hydrolase; KEGG: gbe:GbCGDNIH1_1245 predicted membrane-bound metal-dependent hydrolase.


ensembl_gene_id: Amir_5605
symbol: Amir_5605
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: sil:SPO0467 GntR family transcriptional regulator.


ensembl_gene_id: Amir_5611
symbol: Amir_5611
gene_biotype: protein_coding
description:
  PFAM: lipolytic protein G-D-S-L family; KEGG: met:M446_3487 triple helix repeat-containing COllagen.


ensembl_gene_id: Amir_5635
symbol: Amir_5635
gene_biotype: protein_coding
description:
  TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: mgm:Mmc1_2034 phage tail tape measure protein, TP901 family.


ensembl_gene_id: Amir_5643
symbol: Amir_5643
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 25; SMART: glycoside hydrolase family 25; KEGG: sil:SPO3258 glycosy hydrolase family protein.


ensembl_gene_id: Amir_5647
symbol: Amir_5647
gene_biotype: protein_coding
description:
  PFAM: integrase family protein; KEGG: bce:BC1272 DNA integration/recombination/invertion protein; Belongs to the 'phage' integrase family.


ensembl_gene_id: Amir_5650
symbol: Amir_5650
gene_biotype: protein_coding
description:
  TIGRFAM: para-aminobenzoate synthase, subunit I; glutamine amidotransferase of anthranilate synthase; PFAM: Chorismate binding-like; glutamine amidotransferase class-I; Anthranilate synthase component I domain protein; KEGG: rpd:RPD_2897 para-aminobenzoate synthase, component I.


ensembl_gene_id: Amir_5652
symbol: Amir_5652
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: pca:Pcar_3124 RNA polymerase, sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Amir_5654
symbol: Amir_5654
gene_biotype: protein_coding
description:
  PFAM: Orn/DAP/Arg decarboxylase 2; alanine racemase domain protein; KEGG: mag:amb1388 diaminopimelate decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.


ensembl_gene_id: Amir_5655
symbol: speH
gene_biotype: protein_coding
description:
  S-adenosylmethionine decarboxylase proenzyme; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine; Belongs to the prokaryotic AdoMetDC family. Type 1 subfamily.


ensembl_gene_id: Amir_5656
symbol: speE
gene_biotype: protein_coding
description:
  Spermine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine; Belongs to the spermidine/spermine synthase family.


ensembl_gene_id: Amir_5657
symbol: Amir_5657
gene_biotype: protein_coding
description:
  PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: afw:Anae109_2431 peptidase S9B dipeptidylpeptidase IV subunit.


ensembl_gene_id: Amir_5659
symbol: glyA
gene_biotype: protein_coding
description:
  Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.


ensembl_gene_id: Amir_5660
symbol: gcvT
gene_biotype: protein_coding
description:
  Glycine cleavage system T protein; The glycine cleavage system catalyzes the degradation of glycine.


ensembl_gene_id: Amir_5665
symbol: Amir_5665
gene_biotype: protein_coding
description:
  PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rfr:Rfer_0993 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.


ensembl_gene_id: Amir_5666
symbol: Amir_5666
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: rce:RC1_0378 acyl-CoA dehydrogenase.


ensembl_gene_id: Amir_5668
symbol: Amir_5668
gene_biotype: protein_coding
description:
  TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: pag:PLES_35931 putative acyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Amir_5669
symbol: Amir_5669
gene_biotype: protein_coding
description:
  PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: pmy:Pmen_2590 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase.


ensembl_gene_id: Amir_5670
symbol: Amir_5670
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pmy:Pmen_2972 AraC family transcriptional regulator.


ensembl_gene_id: Amir_5672
symbol: Amir_5672
gene_biotype: protein_coding
description:
  PFAM: GCN5-related N-acetyltransferase; amino acid- binding ACT domain protein; KEGG: mch:Mchl_1293 GCN5-related N- acetyltransferase.


ensembl_gene_id: Amir_5673
symbol: Amir_5673
gene_biotype: protein_coding
description:
  KEGG: vvy:VVA0123 transcriptional regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI.


ensembl_gene_id: Amir_5676
symbol: Amir_5676
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Tetratricopeptide TPR_4; SMART: regulatory protein LuxR; AAA ATPase; KEGG: rlt:Rleg2_5436 transcriptional regulator, LuxR family.


ensembl_gene_id: Amir_5677
symbol: Amir_5677
gene_biotype: protein_coding
description:
  Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; TPR repeat- containing protein; NB-ARC domain protein; transcriptional regulator domain protein; SMART: Tetratricopeptide domain protein; KEGG: scl:sce3550 hypothetical protein.


ensembl_gene_id: Amir_5682
symbol: Amir_5682
gene_biotype: protein_coding
description:
  Carbonate dehydratase; PFAM: carbonic anhydrase; sulphate transporter; Xanthine/uracil/vitamin C permease; KEGG: mxa:MXAN_4784 inorganic anion transporter, sulfate permease (SulP) family.


ensembl_gene_id: Amir_5683
symbol: Amir_5683
gene_biotype: protein_coding
description:
  6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.


ensembl_gene_id: Amir_5684
symbol: Amir_5684
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: hypothetical protein.


ensembl_gene_id: Amir_5685
symbol: Amir_5685
gene_biotype: protein_coding
description:
  PFAM: Pyridoxal-dependent decarboxylase; KEGG: aba:Acid345_2160 aromatic-L-amino-acid decarboxylase.


ensembl_gene_id: Amir_5686
symbol: Amir_5686
gene_biotype: protein_coding
description:
  KEGG: met:M446_5500 acyl-CoA thioesterase II; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase.


ensembl_gene_id: Amir_5687
symbol: Amir_5687
gene_biotype: protein_coding
description:
  KEGG: gur:Gura_4409 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; Belongs to the pyruvate kinase family.


ensembl_gene_id: Amir_5692
symbol: Amir_5692
gene_biotype: protein_coding
description:
  TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: sus:Acid_3815 glutamate synthase (NADH) small subunit.


ensembl_gene_id: Amir_5693
symbol: Amir_5693
gene_biotype: protein_coding
description:
  PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: afw:Anae109_0854 glutamate synthase (ferredoxin).


ensembl_gene_id: Amir_5694
symbol: Amir_5694
gene_biotype: protein_coding
description:
  PFAM: sodium:dicarboxylate symporter; KEGG: gur:Gura_0381 sodium:dicarboxylate symporter; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: Amir_5695
symbol: Amir_5695
gene_biotype: protein_coding
description:
  TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: sfu:Sfum_3723 TRAP transporter solute receptor, TAXI family.


ensembl_gene_id: Amir_5696
symbol: Amir_5696
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: mex:Mext_0328 ATPase domain-containing protein.


ensembl_gene_id: Amir_5698
symbol: Amir_5698
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: ade:Adeh_3856 two component transcriptional regulator.


ensembl_gene_id: Amir_5699
symbol: lgt
gene_biotype: protein_coding
description:
  Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.


ensembl_gene_id: Amir_5700
symbol: trpA
gene_biotype: protein_coding
description:
  Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.


ensembl_gene_id: Amir_5701
symbol: trpB
gene_biotype: protein_coding
description:
  Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.


ensembl_gene_id: Amir_5702
symbol: trpC
gene_biotype: protein_coding
description:
  PFAM: Indole-3-glycerol phosphate synthase; KEGG: afw:Anae109_0373 indole-3-glycerol-phosphate synthase; Belongs to the TrpC family.


ensembl_gene_id: Amir_5704
symbol: trpE
gene_biotype: protein_coding
description:
  Anthranilate synthase component I; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...]


ensembl_gene_id: Amir_5706
symbol: hisI
gene_biotype: protein_coding
description:
  Phosphoribosyl-AMP cyclohydrolase; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.


ensembl_gene_id: Amir_5708
symbol: hisF
gene_biotype: protein_coding
description:
  Imidazoleglycerol phosphate synthase, cyclase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.


ensembl_gene_id: Amir_5709
symbol: Amir_5709
gene_biotype: protein_coding
description:
  TIGRFAM: death-on-curing family protein; PFAM: filamentation induced by cAMP protein Fic; KEGG: pla:Plav_1338 death-on-curing family protein.


ensembl_gene_id: Amir_5711
symbol: Amir_5711
gene_biotype: protein_coding
description:
  PFAM: Clp domain protein; KEGG: Os12g0230100; hypothetical protein; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC.


ensembl_gene_id: Amir_5712
symbol: hisA
gene_biotype: protein_coding
description:
  Bifunctional HisA/TrpF protein; KEGG: plu:plu0797 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4- carboxamide isomerase; TIGRFAM: bifunctional HisA/TrpF protein; PFAM: histidine biosynthesis protein.


ensembl_gene_id: Amir_5713
symbol: hisH
gene_biotype: protein_coding
description:
  Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.


ensembl_gene_id: Amir_5715
symbol: Amir_5715
gene_biotype: protein_coding
description:
  PFAM: Transketolase central region; Transketolase domain protein; KEGG: rpe:RPE_1518 transketolase, central region.


ensembl_gene_id: Amir_5717
symbol: Amir_5717
gene_biotype: protein_coding
description:
  KEGG: aav:Aave_2276 transcriptional regulator, MerR family; TIGRFAM: redox-sensitive transcriptional activator SoxR; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR.


ensembl_gene_id: Amir_5718
symbol: kptA
gene_biotype: protein_coding
description:
  Phosphotransferase KptA/Tpt1; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase.


ensembl_gene_id: Amir_5720
symbol: hisB
gene_biotype: protein_coding
description:
  PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: acr:Acry_1413 imidazoleglycerol-phosphate dehydratase.


ensembl_gene_id: Amir_5721
symbol: hisC
gene_biotype: protein_coding
description:
  TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: bur:Bcep18194_C7445 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.


ensembl_gene_id: Amir_5722
symbol: hisD
gene_biotype: protein_coding
description:
  Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.


ensembl_gene_id: Amir_5724
symbol: egtE
gene_biotype: protein_coding
description:
  Aminotransferase class V; Probably catalyzes the conversion of hercynylcysteine sulfoxide to ergothioneine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. EgtE subfamily.


ensembl_gene_id: Amir_5726
symbol: Amir_5726
gene_biotype: protein_coding
description:
  PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: eta:ETA_23610 putative hydrolase.


ensembl_gene_id: Amir_5728
symbol: Amir_5728
gene_biotype: protein_coding
description:
  TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; KEGG: pzu:PHZ_c2609 nicotinate-nucleotide pyrophosphorylase; Belongs to the NadC/ModD family.


ensembl_gene_id: Amir_5730
symbol: Amir_5730
gene_biotype: protein_coding
description:
  Quinolinate synthetase complex, A subunit; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.


ensembl_gene_id: Amir_5732
symbol: Amir_5732
gene_biotype: protein_coding
description:
  PFAM: peptidase S16 lon domain protein; SMART: peptidase S16 lon domain protein; KEGG: pau:PA14_11940 hypothetical protein.


ensembl_gene_id: Amir_5734
symbol: Amir_5734
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: cti:RALTA_B1248 putative muconolactone transporter; major facilitator superfamily MFS_1.


ensembl_gene_id: Amir_5735
symbol: Amir_5735
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1445; KEGG: pde:Pden_0321 hypothetical protein; Belongs to the D-glutamate cyclase family.


ensembl_gene_id: Amir_5738
symbol: bioB
gene_biotype: protein_coding
description:
  Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.


ensembl_gene_id: Amir_5739
symbol: bioD
gene_biotype: protein_coding
description:
  Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.


ensembl_gene_id: Amir_5742
symbol: Amir_5742
gene_biotype: protein_coding
description:
  TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: scl:sce0693 adenosylmethionine--8-amino-7- oxononanoate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Amir_5743
symbol: Amir_5743
gene_biotype: protein_coding
description:
  KEGG: pca:Pcar_1222 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein.


ensembl_gene_id: Amir_5745
symbol: Amir_5745
gene_biotype: protein_coding
description:
  TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bce:BC0204 bicyclomycin resistance protein.


ensembl_gene_id: Amir_5746
symbol: Amir_5746
gene_biotype: protein_coding
description:
  Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: Amir_5748
symbol: Amir_5748
gene_biotype: protein_coding
description:
  PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: scl:sce1210 hypothetical protein.


ensembl_gene_id: Amir_5749
symbol: Amir_5749
gene_biotype: protein_coding
description:
  PFAM: sodium/hydrogen exchanger; TrkA-C domain protein; KEGG: afw:Anae109_0927 sodium/hydrogen exchanger.


ensembl_gene_id: Amir_5752
symbol: Amir_5752
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF167; KEGG: scl:sce8156 hypothetical protein; Belongs to the UPF0235 family.


ensembl_gene_id: Amir_5753
symbol: ileS
gene_biotype: protein_coding
description:
  isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily.


ensembl_gene_id: Amir_5757
symbol: sepF
gene_biotype: protein_coding
description:
  Protein of unknown function DUF552; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA.


ensembl_gene_id: Amir_5758
symbol: Amir_5758
gene_biotype: protein_coding
description:
  Alanine racemase domain protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.


ensembl_gene_id: Amir_5759
symbol: Amir_5759
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF152; KEGG: tgr:Tgr7_0816 protein of unknown function DUF152; Belongs to the multicopper oxidase YfiH/RL5 family.


ensembl_gene_id: Amir_5760
symbol: ftsZ
gene_biotype: protein_coding
description:
  Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.


ensembl_gene_id: Amir_5761
symbol: ftsQ
gene_biotype: protein_coding
description:
  Polypeptide-transport-associated domain protein FtsQ-type; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.


ensembl_gene_id: Amir_5763
symbol: murG
gene_biotype: protein_coding
description:
  Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.


ensembl_gene_id: Amir_5764
symbol: Amir_5764
gene_biotype: protein_coding
description:
  TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: bce:BC3911 stage V sporulation protein E; Belongs to the SEDS family.


ensembl_gene_id: Amir_5767
symbol: Amir_5767
gene_biotype: protein_coding
description:
  Putative FAD-dependent dehydrogenase-like protein; KEGG: sfu:Sfum_1001 FAD dependent oxidoreductase.


ensembl_gene_id: Amir_5768
symbol: murD
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoylalanine/D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.


ensembl_gene_id: Amir_5769
symbol: mraY
gene_biotype: protein_coding
description:
  phospho-N-acetylmuramoyl-pentapeptide-transferas e; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.


ensembl_gene_id: Amir_5770
symbol: murF
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.


ensembl_gene_id: Amir_5771
symbol: murE
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramyl-tripeptide synthetase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.


ensembl_gene_id: Amir_5772
symbol: Amir_5772
gene_biotype: protein_coding
description:
  Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerization domain; KEGG: ppd:Ppro_3295 peptidoglycan glycosyltransferase.


ensembl_gene_id: Amir_5774
symbol: rsmH
gene_biotype: protein_coding
description:
  S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.


ensembl_gene_id: Amir_5775
symbol: mraZ
gene_biotype: protein_coding
description:
  TIGRFAM: MraZ protein; PFAM: protein of unknown function UPF0040; KEGG: bha:BH2576 cell division protein MraZ; Belongs to the MraZ family.


ensembl_gene_id: Amir_5776
symbol: Amir_5776
gene_biotype: protein_coding
description:
  PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: bha:BH0604 methanol dehydrogenase regulatory protein.


ensembl_gene_id: Amir_5778
symbol: Amir_5778
gene_biotype: protein_coding
description:
  PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: aba:Acid345_2146 transglutaminase-like.


ensembl_gene_id: Amir_5783
symbol: Amir_5783
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; cyclic nucleotide- binding; KEGG: lch:Lcho_0755 Crp/FNR family transcriptional regulator.


ensembl_gene_id: Amir_5784
symbol: dinB
gene_biotype: protein_coding
description:
  DNA-directed DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.


ensembl_gene_id: Amir_5787
symbol: Amir_5787
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: rpb:RPB_3555 RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Amir_5788
symbol: Amir_5788
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: ank:AnaeK_0691 methyltransferase type 11.


ensembl_gene_id: Amir_5790
symbol: Amir_5790
gene_biotype: protein_coding
description:
  PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; Formamidopyrimidine-DNA glycosylase catalytic domain protein; KEGG: afw:Anae109_1725 DNA-(apurinic or apyrimidinic site) lyase.


ensembl_gene_id: Amir_5791
symbol: pyrD
gene_biotype: protein_coding
description:
  Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.


ensembl_gene_id: Amir_5793
symbol: Amir_5793
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bpy:Bphyt_6660 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Amir_5796
symbol: Amir_5796
gene_biotype: protein_coding
description:
  Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: GG12650 gene product from transcript GG12650- RA.


ensembl_gene_id: Amir_5797
symbol: Amir_5797
gene_biotype: protein_coding
description:
  PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: pde:Pden_1785 helix-turn-helix domain protein.


ensembl_gene_id: Amir_5799
symbol: Amir_5799
gene_biotype: protein_coding
description:
  TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3- phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: bha:BH2386 phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: Amir_5800
symbol: rimO
gene_biotype: protein_coding
description:
  MiaB-like tRNA modifying enzyme YliG; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.


ensembl_gene_id: Amir_5805
symbol: Amir_5805
gene_biotype: protein_coding
description:
  PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: dde:Dde_1136 1-acyl-sn-glycerol-3-phosphate acyltransferase.


ensembl_gene_id: Amir_5806
symbol: rnj
gene_biotype: protein_coding
description:
  Beta-lactamase domain protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.


ensembl_gene_id: Amir_5807
symbol: dapA
gene_biotype: protein_coding
description:
  Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).


ensembl_gene_id: Amir_5809
symbol: Amir_5809
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sus:Acid_3693 serine/threonine protein kinase.


ensembl_gene_id: Amir_5811
symbol: thyX
gene_biotype: protein_coding
description:
  Thymidylate synthase, flavin-dependent; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant.


ensembl_gene_id: Amir_5821
symbol: dapB
gene_biotype: protein_coding
description:
  Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.


ensembl_gene_id: Amir_5822
symbol: Amir_5822
gene_biotype: protein_coding
description:
  PFAM: peptidase M16 domain protein; KEGG: gur:Gura_1907 peptidase M16 domain-containing protein; Belongs to the peptidase M16 family.


ensembl_gene_id: Amir_5823
symbol: pnp
gene_biotype: protein_coding
description:
  Guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.


ensembl_gene_id: Amir_5824
symbol: rpsO
gene_biotype: protein_coding
description:
  Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.


ensembl_gene_id: Amir_5825
symbol: Amir_5825
gene_biotype: protein_coding
description:
  2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.


ensembl_gene_id: Amir_5827
symbol: Amir_5827
gene_biotype: protein_coding
description:
  TIGRFAM: riboflavin biosynthesis protein RibF; cytidyltransferase-related domain protein; PFAM: FAD synthetase; Riboflavin kinase; KEGG: dvm:DvMF_1762 riboflavin biosynthesis protein RibF; Belongs to the ribF family.


ensembl_gene_id: Amir_5828
symbol: truB
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.


ensembl_gene_id: Amir_5830
symbol: Amir_5830
gene_biotype: protein_coding
description:
  TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: MATE efflux family protein.


ensembl_gene_id: Amir_5831
symbol: Amir_5831
gene_biotype: protein_coding
description:
  PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: pca:Pcar_1558 exopolyphosphatase related protein.


ensembl_gene_id: Amir_5832
symbol: rbfA
gene_biotype: protein_coding
description:
  Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.


ensembl_gene_id: Amir_5834
symbol: infB
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.


ensembl_gene_id: Amir_5837
symbol: rimP
gene_biotype: protein_coding
description:
  Protein of unknown function DUF150; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.


ensembl_gene_id: Amir_5842
symbol: Amir_5842
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mex:Mext_3419 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Amir_5846
symbol: Amir_5846
gene_biotype: protein_coding
description:
  PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ade:Adeh_0672 haloacid dehalogenase-like hydrolase.


ensembl_gene_id: Amir_5847
symbol: proS
gene_biotype: protein_coding
description:
  prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...]


ensembl_gene_id: Amir_5849
symbol: Amir_5849
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF328; KEGG: sun:SUN_0122 hypothetical protein; Belongs to the UPF0246 family.


ensembl_gene_id: Amir_5850
symbol: Amir_5850
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: swi:Swit_2706 Crp/FNR family transcriptional regulator.


ensembl_gene_id: Amir_5851
symbol: Amir_5851
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: gsu:GSU1992 Crp/FNR family transcriptional regulator.


ensembl_gene_id: Amir_5852
symbol: Amir_5852
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function RIO1; SMART: protein of unknown function RIO1; KEGG: afw:Anae109_3105 protein of unknown function RIO1.


ensembl_gene_id: Amir_5853
symbol: Amir_5853
gene_biotype: protein_coding
description:
  PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: smt:Smal_0480 DEAD/DEAH box helicase domain protein.


ensembl_gene_id: Amir_5854
symbol: Amir_5854
gene_biotype: protein_coding
description:
  TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: cvi:CV_0813 uroporphyrin-III C- methyltransferase.


ensembl_gene_id: Amir_5855
symbol: Amir_5855
gene_biotype: protein_coding
description:
  PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: peptidase S1 and S6 chymotrypsin/Hap; KEGG: similar to putative trypsin-like proteinase.


ensembl_gene_id: Amir_5858
symbol: Amir_5858
gene_biotype: protein_coding
description:
  PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: ppd:Ppro_3231 precorrin-4 C11- methyltransferase.


ensembl_gene_id: Amir_5859
symbol: cobB-2
gene_biotype: protein_coding
description:
  Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.


ensembl_gene_id: Amir_5860
symbol: Amir_5860
gene_biotype: protein_coding
description:
  TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: nar:Saro_0331 cob(I)yrinic acid a,c-diamide adenosyltransferase.


ensembl_gene_id: Amir_5861
symbol: Amir_5861
gene_biotype: protein_coding
description:
  KEGG: rso:RS03742 chelatase protein; PFAM: von Willebrand factor type A; magnesium chelatase ChlI subunit; SMART: von Willebrand factor type A; AAA ATPase.


ensembl_gene_id: Amir_5864
symbol: Amir_5864
gene_biotype: protein_coding
description:
  8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II; DegT/DnrJ/EryC1/StrS aminotransferase; aminotransferase class-III; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: afw:Anae109_3561 8-amino-7-oxononanoate synthase.


ensembl_gene_id: Amir_5866
symbol: Amir_5866
gene_biotype: protein_coding
description:
  PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: peptidase S1 and S6 chymotrypsin/Hap; KEGG: similar to oviductin.


ensembl_gene_id: Amir_5869
symbol: Amir_5869
gene_biotype: protein_coding
description:
  PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: peptidase S1 and S6 chymotrypsin/Hap; KEGG: GK19455 gene product from transcript GK19455- RA.


ensembl_gene_id: Amir_5873
symbol: lon
gene_biotype: protein_coding
description:
  ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.


ensembl_gene_id: Amir_5878
symbol: Amir_5878
gene_biotype: protein_coding
description:
  TIGRFAM: mycothione reductase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerization region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; KEGG: ade:Adeh_2206 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Amir_5880
symbol: Amir_5880
gene_biotype: protein_coding
description:
  PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: psa:PST_2058 probable transcriptional regulator.


ensembl_gene_id: Amir_5881
symbol: Amir_5881
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rlt:Rleg2_1625 transcriptional regulator, LysR family.


ensembl_gene_id: Amir_5883
symbol: cobQ
gene_biotype: protein_coding
description:
  Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.


ensembl_gene_id: Amir_5886
symbol: Amir_5886
gene_biotype: protein_coding
description:
  PFAM: penicillin-binding protein transpeptidase; NTF2 domain protein transpeptidase; KEGG: mxa:MXAN_7139 putative penicillin-binding protein.


ensembl_gene_id: Amir_5888
symbol: ispG
gene_biotype: protein_coding
description:
  1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.


ensembl_gene_id: Amir_5890
symbol: dxr
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.


ensembl_gene_id: Amir_5894
symbol: Amir_5894
gene_biotype: protein_coding
description:
  PFAM: histidine kinase dimerization and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: xcb:XC_0113 two-component system sensor protein.


ensembl_gene_id: Amir_5895
symbol: Amir_5895
gene_biotype: protein_coding
description:
  Ornithine carbamoyltransferase; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_6381 ornithine carbamoyltransferase.


ensembl_gene_id: Amir_5896
symbol: Amir_5896
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sus:Acid_2368 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Amir_5897
symbol: Amir_5897
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: cak:Caul_3951 extracellular solute-binding protein.


ensembl_gene_id: Amir_5898
symbol: potA
gene_biotype: protein_coding
description:
  Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.


ensembl_gene_id: Amir_5900
symbol: Amir_5900
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: afw:Anae109_0235 protein kinase.


ensembl_gene_id: Amir_5902
symbol: rlmN
gene_biotype: protein_coding
description:
  Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.


ensembl_gene_id: Amir_5903
symbol: Amir_5903
gene_biotype: protein_coding
description:
  PFAM: transcriptional regulator PadR family protein; KEGG: scl:sce3089 PadR family transcriptional regulator.


ensembl_gene_id: Amir_5905
symbol: Amir_5905
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: acp:A2cp1_3874 methyltransferase type 11.


ensembl_gene_id: Amir_5906
symbol: Amir_5906
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sse:Ssed_0208 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Amir_5907
symbol: Amir_5907
gene_biotype: protein_coding
description:
  PFAM: phosphatidate cytidylyltransferase; KEGG: mgm:Mmc1_1845 phosphatidate cytidylyltransferase; Belongs to the CDS family.


ensembl_gene_id: Amir_5908
symbol: frr
gene_biotype: protein_coding
description:
  Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.


ensembl_gene_id: Amir_5910
symbol: tsf
gene_biotype: protein_coding
description:
  Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.


ensembl_gene_id: Amir_5911
symbol: rpsB
gene_biotype: protein_coding
description:
  TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: bha:BH2427 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.


ensembl_gene_id: Amir_5913
symbol: Amir_5913
gene_biotype: protein_coding
description:
  RNA polymerase, sigma 28 subunit, FliA/WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: Amir_5914
symbol: xerC
gene_biotype: protein_coding
description:
  Integrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: Amir_5916
symbol: Amir_5916
gene_biotype: protein_coding
description:
  KEGG: ank:AnaeK_3688 Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase.


ensembl_gene_id: Amir_5917
symbol: Amir_5917
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function UPF0102; KEGG: dps:DP2807 hypothetical protein; Belongs to the UPF0102 family.


ensembl_gene_id: Amir_5920
symbol: Amir_5920
gene_biotype: protein_coding
description:
  TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: TPP1; chloroplast thylakoid processing peptidase; K03100 signal peptidase I; Belongs to the peptidase S26 family.


ensembl_gene_id: Amir_5921
symbol: Amir_5921
gene_biotype: protein_coding
description:
  KEGG: signal peptidase, putative; K03100 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; Belongs to the peptidase S26 family.


ensembl_gene_id: Amir_5922
symbol: rplS
gene_biotype: protein_coding
description:
  Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.


ensembl_gene_id: Amir_5923
symbol: trmD
gene_biotype: protein_coding
description:
  tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.


ensembl_gene_id: Amir_5924
symbol: rimM
gene_biotype: protein_coding
description:
  16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.


ensembl_gene_id: Amir_5926
symbol: rpsP
gene_biotype: protein_coding
description:
  TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: swi:Swit_2657 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.


ensembl_gene_id: Amir_5927
symbol: pxpA
gene_biotype: protein_coding
description:
  LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.


ensembl_gene_id: Amir_5930
symbol: ffh
gene_biotype: protein_coding
description:
  Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.


ensembl_gene_id: Amir_5932
symbol: glnD
gene_biotype: protein_coding
description:
  UTP-GlnB uridylyltransferase, GlnD; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism.


ensembl_gene_id: Amir_5933
symbol: Amir_5933
gene_biotype: protein_coding
description:
  PFAM: nitrogen regulatory protein P-II; KEGG: cja:CJA_3390 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.


ensembl_gene_id: Amir_5934
symbol: Amir_5934
gene_biotype: protein_coding
description:
  TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: pca:Pcar_2589 ammonium transporter.


ensembl_gene_id: Amir_5936
symbol: alc
gene_biotype: protein_coding
description:
  Allantoicase; KEGG: scl:sce5877 putative bifunctional allantoicase/OHCU decarboxylase; TIGRFAM: allantoicase; PFAM: Allantoicase region; Belongs to the allantoicase family.


ensembl_gene_id: Amir_5937
symbol: Amir_5937
gene_biotype: protein_coding
description:
  Allantoinase; KEGG: scl:sce5876 allantoinase; TIGRFAM: allantoinase; PFAM: amidohydrolase; Amidohydrolase 3.


ensembl_gene_id: Amir_5939
symbol: Amir_5939
gene_biotype: protein_coding
description:
  Urate oxidase; Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.


ensembl_gene_id: Amir_5942
symbol: Amir_5942
gene_biotype: protein_coding
description:
  KEGG: mxa:MXAN_6441 malate synthase; TIGRFAM: malate synthase A; PFAM: malate synthase; Belongs to the malate synthase family.


ensembl_gene_id: Amir_5943
symbol: Amir_5943
gene_biotype: protein_coding
description:
  PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: bid:Bind_3440 IclR family transcriptional regulator.


ensembl_gene_id: Amir_5945
symbol: ftsY
gene_biotype: protein_coding
description:
  Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).


ensembl_gene_id: Amir_5946
symbol: Amir_5946
gene_biotype: protein_coding
description:
  Protein of unknown function UPF0075; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.


ensembl_gene_id: Amir_5947
symbol: Amir_5947
gene_biotype: protein_coding
description:
  PFAM: Na+/solute symporter; KEGG: gdi:GDI1156 putative sodium cotransporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: Amir_5948
symbol: Amir_5948
gene_biotype: protein_coding
description:
  PFAM: GCN5-related N-acetyltransferase; KEGG: pzu:PHZ_c1335 L-2,4-diaminobutyric acid acetyltransferase.


ensembl_gene_id: Amir_5951
symbol: Amir_5951
gene_biotype: protein_coding
description:
  PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: gur:Gura_4298 phospholipid/glycerol acyltransferase.


ensembl_gene_id: Amir_5952
symbol: smc
gene_biotype: protein_coding
description:
  Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.


ensembl_gene_id: Amir_5954
symbol: Amir_5954
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: rpb:RPB_3549 RNA polymerase sigma factor.


ensembl_gene_id: Amir_5959
symbol: Amir_5959
gene_biotype: protein_coding
description:
  PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bja:blr2205 putative dehydrogenase.


ensembl_gene_id: Amir_5960
symbol: Amir_5960
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: set:SEN0666 KDP operon transcriptional regulatory protein.


ensembl_gene_id: Amir_5962
symbol: mutM
gene_biotype: protein_coding
description:
  formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.


ensembl_gene_id: Amir_5964
symbol: rnc
gene_biotype: protein_coding
description:
  Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.


ensembl_gene_id: Amir_5965
symbol: rpmF-2
gene_biotype: protein_coding
description:
  TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: mgm:Mmc1_1643 LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family.


ensembl_gene_id: Amir_5967
symbol: Amir_5967
gene_biotype: protein_coding
description:
  Putative cell division initiation protein; KEGG: hypothetical protein; K03497 chromosome partitioning protein, ParB family.


ensembl_gene_id: Amir_5968
symbol: coaD
gene_biotype: protein_coding
description:
  Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.


ensembl_gene_id: Amir_5969
symbol: Amir_5969
gene_biotype: protein_coding
description:
  TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase putative; KEGG: scl:sce8059 putative methylase.


ensembl_gene_id: Amir_5973
symbol: Amir_5973
gene_biotype: protein_coding
description:
  Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.


ensembl_gene_id: Amir_5977
symbol: recG
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.


ensembl_gene_id: Amir_5979
symbol: rpmB-2
gene_biotype: protein_coding
description:
  TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: aba:Acid345_0165 LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.


ensembl_gene_id: Amir_5980
symbol: Amir_5980
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4- dehydrorhamnose reductase; KEGG: ade:Adeh_4303 NAD-dependent epimerase/dehydratase.


ensembl_gene_id: Amir_5982
symbol: ung
gene_biotype: protein_coding
description:
  Uracil-DNA glycosylase superfamily; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.


ensembl_gene_id: Amir_5985
symbol: thiL
gene_biotype: protein_coding
description:
  Thiamine-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.


ensembl_gene_id: Amir_5986
symbol: Amir_5986
gene_biotype: protein_coding
description:
  PFAM: regulatory protein AsnC/Lrp family; KEGG: pzu:PHZ_c3044 transcriptional regulator, Lrp/AsnC family.


ensembl_gene_id: Amir_5989
symbol: Amir_5989
gene_biotype: protein_coding
description:
  PFAM: cysteine dioxygenase type I; Cupin 2 conserved barrel domain protein; KEGG: mxa:MXAN_0927 cysteine dioxygenase, type I.


ensembl_gene_id: Amir_5991
symbol: Amir_5991
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family with aminotransferase domain; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: ade:Adeh_2233 GntR family transcriptional regulator.


ensembl_gene_id: Amir_5997
symbol: Amir_5997
gene_biotype: protein_coding
description:
  PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sil:SPO3344 cystathionine gamma-lyase.


ensembl_gene_id: Amir_5998
symbol: gpsA
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; NADP oxidoreductase coenzyme F420-dependent; KEGG: ade:Adeh_0396 glycerol-3-phosphate dehydrogenase (NAD(P)+).


ensembl_gene_id: Amir_5999
symbol: Amir_5999
gene_biotype: protein_coding
description:
  PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: ank:AnaeK_4035 1-acyl-sn-glycerol-3-phosphate acyltransferase.


ensembl_gene_id: Amir_6000
symbol: fbiD
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Guanylyltransferase that catalyzes the activation of phosphoenolpyruvate (PEP) as enolpyruvoyl-2-diphospho-5'-guanosine, via the condensation of PEP with GTP. It is involved in the biosynthesis of coenzyme F420, a hydride carrier cofactor.


ensembl_gene_id: Amir_6002
symbol: ppk
gene_biotype: protein_coding
description:
  Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.


ensembl_gene_id: Amir_6005
symbol: leuD
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.


ensembl_gene_id: Amir_6006
symbol: leuC
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.


ensembl_gene_id: Amir_6007
symbol: Amir_6007
gene_biotype: protein_coding
description:
  PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: cti:RALTA_B1947 putative transcriptional regulator, IclR family.


ensembl_gene_id: Amir_6008
symbol: Amir_6008
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bha:BH0473 hypothetical protein.


ensembl_gene_id: Amir_6009
symbol: gltX
gene_biotype: protein_coding
description:
  glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.


ensembl_gene_id: Amir_6013
symbol: Amir_6013
gene_biotype: protein_coding
description:
  TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: LeuA allosteric (dimerisation) domain; pyruvate carboxyltransferase; KEGG: scl:sce3734 putative alpha- isopropylmalate/homocitrate synthase family transferase; Belongs to the alpha-IPM synthase/homocitrate synthase family.


ensembl_gene_id: Amir_6014
symbol: leuB
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. Belongs to the isocitrate and isopropylmalate dehydrogenases family. LeuB type 2 subfamily.


ensembl_gene_id: Amir_6017
symbol: Amir_6017
gene_biotype: protein_coding
description:
  KEGG: atc:AGR_L_2264 D-3-phosphoglycerate dehydrogenase; TIGRFAM: D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; amino acid-binding ACT domain protein.


ensembl_gene_id: Amir_6019
symbol: ilvC
gene_biotype: protein_coding
description:
  Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.


ensembl_gene_id: Amir_6020
symbol: Amir_6020
gene_biotype: protein_coding
description:
  TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: gur:Gura_3719 acetolactate synthase 3 regulatory subunit.


ensembl_gene_id: Amir_6021
symbol: Amir_6021
gene_biotype: protein_coding
description:
  TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; KEGG: ade:Adeh_1978 acetolactate synthase, large subunit.


ensembl_gene_id: Amir_6024
symbol: ilvD
gene_biotype: protein_coding
description:
  KEGG: msl:Msil_3234 dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; Belongs to the IlvD/Edd family.


ensembl_gene_id: Amir_6030
symbol: Amir_6030
gene_biotype: protein_coding
description:
  PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: sus:Acid_3454 tetratricopeptide TPR_4.


ensembl_gene_id: Amir_6032
symbol: gatB
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.


ensembl_gene_id: Amir_6034
symbol: gatA
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) amidotransferase, A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).


ensembl_gene_id: Amir_6035
symbol: gatC
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.


ensembl_gene_id: Amir_6038
symbol: ligA-2
gene_biotype: protein_coding
description:
  DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily.


ensembl_gene_id: Amir_6040
symbol: Amir_6040
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: acr:Acry_2159 LysR family transcriptional regulator.


ensembl_gene_id: Amir_6045
symbol: mnmA
gene_biotype: protein_coding
description:
  tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.


ensembl_gene_id: Amir_6046
symbol: Amir_6046
gene_biotype: protein_coding
description:
  PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cysteine desulfurase NifS; K04487 cysteine desulfurase.


ensembl_gene_id: Amir_6048
symbol: Amir_6048
gene_biotype: protein_coding
description:
  PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: cti:RALTA_A2392 phospholipid/glycerol acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase transmembrane protein.


ensembl_gene_id: Amir_6050
symbol: Amir_6050
gene_biotype: protein_coding
description:
  PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; KEGG: met:M446_2006 electron transfer flavoprotein alpha subunit.


ensembl_gene_id: Amir_6051
symbol: Amir_6051
gene_biotype: protein_coding
description:
  PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: sat:SYN_02636 electron transfer flavoprotein beta-subunit.


ensembl_gene_id: Amir_6056
symbol: Amir_6056
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sus:Acid_7436 methyltransferase type 11.


ensembl_gene_id: Amir_6057
symbol: Amir_6057
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 57; KEGG: scl:sce1626 hypothetical protein; Belongs to the glycosyl hydrolase 57 family.


ensembl_gene_id: Amir_6061
symbol: Amir_6061
gene_biotype: protein_coding
description:
  Acetyltransferase (isoleucine patch superfamily)-like protein; KEGG: bpy:Bphyt_6269 putative acetyltransferase.


ensembl_gene_id: Amir_6062
symbol: Amir_6062
gene_biotype: protein_coding
description:
  PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: asa:ASA_2899 ribonucleoside hydrolase 1.


ensembl_gene_id: Amir_6064
symbol: Amir_6064
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; UbiE/COQ5 methyltransferase; Methyltransferase type 12; KEGG: bja:bll7234 hypothetical protein.


ensembl_gene_id: Amir_6067
symbol: Amir_6067
gene_biotype: protein_coding
description:
  KEGG: ade:Adeh_1056 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.


ensembl_gene_id: Amir_6071
symbol: Amir_6071
gene_biotype: protein_coding
description:
  KEGG: gsu:GSU0371 carbohydrate phosphorylase family protein; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35.


ensembl_gene_id: Amir_6072
symbol: glgE
gene_biotype: protein_coding
description:
  Alpha amylase catalytic region; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.


ensembl_gene_id: Amir_6073
symbol: Amir_6073
gene_biotype: protein_coding
description:
  KEGG: mxa:MXAN_3684 trehalose synthase; TIGRFAM: trehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.


ensembl_gene_id: Amir_6075
symbol: glgB
gene_biotype: protein_coding
description:
  1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.


ensembl_gene_id: Amir_6078
symbol: Amir_6078
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function zinc metallopeptidase putative; KEGG: aba:Acid345_4616 protein of unknown function, zinc metallopeptidase putative.


ensembl_gene_id: Amir_6082
symbol: Amir_6082
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bcz:BCZK0946 MarR family transcriptional regulator.


ensembl_gene_id: Amir_6085
symbol: Amir_6085
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: scl:sce5573 putative ABC transporter ATP- binding protein.


ensembl_gene_id: Amir_6090
symbol: Amir_6090
gene_biotype: protein_coding
description:
  Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: smd:Smed_4315 periplasmic binding protein/LacI transcriptional regulator.


ensembl_gene_id: Amir_6093
symbol: Amir_6093
gene_biotype: protein_coding
description:
  Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: smd:Smed_0344 monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Amir_6094
symbol: Amir_6094
gene_biotype: protein_coding
description:
  PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rbsB; ABC transporter substrate binding protein (ribose); K10439 ribose transport system substrate-binding protein.


ensembl_gene_id: Amir_6098
symbol: Amir_6098
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: bsu:BSU33080 hypothetical protein.


ensembl_gene_id: Amir_6099
symbol: Amir_6099
gene_biotype: protein_coding
description:
  GAF sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerization and phosphoacceptor region; GAF domain protein; SMART: ATP-binding region ATPase domain protein; GAF domain protein; KEGG: bce:BC2216 two-component sensor protein YhcY.


ensembl_gene_id: Amir_6104
symbol: Amir_6104
gene_biotype: protein_coding
description:
  TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: bha:BH2029 thiolase (acetyl-CoA acetyltransferase); Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Amir_6105
symbol: Amir_6105
gene_biotype: protein_coding
description:
  TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: gbm:Gbem_0558 methylmalonyl-CoA epimerase.


ensembl_gene_id: Amir_6110
symbol: Amir_6110
gene_biotype: protein_coding
description:
  TIGRFAM: regulatory protein, FmdB family; KEGG: mgm:Mmc1_2457 putative regulatory protein, FmdB family.


ensembl_gene_id: Amir_6112
symbol: Amir_6112
gene_biotype: protein_coding
description:
  TIGRFAM: dihydroxyacetone kinase, phosphotransfer subunit; phosphocarrier, HPr family; PFAM: PTS system fructose subfamily IIA component; phosphoryl transfer system HPr; KEGG: dde:Dde_1180 phosphoenolpyruvate--protein phosphotransferase.


ensembl_gene_id: Amir_6113
symbol: Amir_6113
gene_biotype: protein_coding
description:
  TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; KEGG: gdi:GDI0264 putative PTS-dependent dihydroxyacetone kinase.


ensembl_gene_id: Amir_6114
symbol: Amir_6114
gene_biotype: protein_coding
description:
  KEGG: gdj:Gdia_2328 dihydroxyacetone kinase, DhaK subunit; TIGRFAM: dihydroxyacetone kinase, DhaK subunit; PFAM: Dak kinase.


ensembl_gene_id: Amir_6115
symbol: Amir_6115
gene_biotype: protein_coding
description:
  PFAM: Aldehyde Dehydrogenase; KEGG: aba:Acid345_1443 succinate-semialdehyde dehydrogenase (NAD(P)+); Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: Amir_6118
symbol: Amir_6118
gene_biotype: protein_coding
description:
  TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: sus:Acid_3843 SSS family solute/sodium (Na+) symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: Amir_6121
symbol: Amir_6121
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bra:BRADO4105 transcriptional regulator.


ensembl_gene_id: Amir_6124
symbol: nucS
gene_biotype: protein_coding
description:
  Protein of unknown function DUF91; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.


ensembl_gene_id: Amir_6132
symbol: murA
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine1- carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.


ensembl_gene_id: Amir_6133
symbol: Amir_6133
gene_biotype: protein_coding
description:
  TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: mmr:Mmar10_2358 ATP:cob(I)alamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.


ensembl_gene_id: Amir_6135
symbol: atpC
gene_biotype: protein_coding
description:
  ATP synthase F1, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.


ensembl_gene_id: Amir_6136
symbol: atpD
gene_biotype: protein_coding
description:
  ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.


ensembl_gene_id: Amir_6137
symbol: atpG
gene_biotype: protein_coding
description:
  ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.


ensembl_gene_id: Amir_6138
symbol: atpA
gene_biotype: protein_coding
description:
  ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.


ensembl_gene_id: Amir_6139
symbol: atpH
gene_biotype: protein_coding
description:
  ATP synthase F1, delta subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family.


ensembl_gene_id: Amir_6140
symbol: atpF
gene_biotype: protein_coding
description:
  ATP synthase F0, B subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.


ensembl_gene_id: Amir_6141
symbol: atpE
gene_biotype: protein_coding
description:
  ATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: Amir_6142
symbol: atpB
gene_biotype: protein_coding
description:
  ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.


ensembl_gene_id: Amir_6146
symbol: Amir_6146
gene_biotype: protein_coding
description:
  TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: bca:BCE_5452 SUA5/YciO/YrdC/YwlC family protein; Belongs to the SUA5 family.


ensembl_gene_id: Amir_6147
symbol: prmC
gene_biotype: protein_coding
description:
  Modification methylase, HemK family; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.


ensembl_gene_id: Amir_6148
symbol: Amir_6148
gene_biotype: protein_coding
description:
  TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerization region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; glucose-inhibited division protein A; KEGG: rpa:RPA2863 dihydrolipoamide dehydrogenase.


ensembl_gene_id: Amir_6149
symbol: Amir_6149
gene_biotype: protein_coding
description:
  PFAM: BAAT/Acyl-CoA thioester hydrolase; acyl-CoA thioester hydrolase/bile acid-CoA amino acid N- acetyltransferase; KEGG: sus:Acid_3161 palmitoyl-CoA hydrolase.


ensembl_gene_id: Amir_6150
symbol: prfA
gene_biotype: protein_coding
description:
  Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.


ensembl_gene_id: Amir_6152
symbol: Amir_6152
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: mes:Meso_0153 chromate transporter, chromate ion transporter (CHR) family.


ensembl_gene_id: Amir_6153
symbol: rho
gene_biotype: protein_coding
description:
  Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.


ensembl_gene_id: Amir_6154
symbol: thrB
gene_biotype: protein_coding
description:
  Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.


ensembl_gene_id: Amir_6155
symbol: Amir_6155
gene_biotype: protein_coding
description:
  Threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine.


ensembl_gene_id: Amir_6156
symbol: Amir_6156
gene_biotype: protein_coding
description:
  PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; KEGG: gme:Gmet_1629 homoserine dehydrogenase.


ensembl_gene_id: Amir_6161
symbol: Amir_6161
gene_biotype: protein_coding
description:
  TIGRFAM: alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92; coagulation factor 5/8 type domain protein; KEGG: sml:Smlt3935 putative glycosyltransferase.


ensembl_gene_id: Amir_6162
symbol: Amir_6162
gene_biotype: protein_coding
description:
  TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: mpo:Mpop_4086 cation diffusion facilitator family transporter.


ensembl_gene_id: Amir_6164
symbol: Amir_6164
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 5; KEGG: pla:Plav_0833 hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.


ensembl_gene_id: Amir_6166
symbol: Amir_6166
gene_biotype: protein_coding
description:
  Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; transcriptional regulator domain protein; SMART: AAA ATPase; KEGG: sus:Acid_5780 serine/threonine protein kinase.


ensembl_gene_id: Amir_6173
symbol: Amir_6173
gene_biotype: protein_coding
description:
  Transcriptional activator ligand binding domain protein; PFAM: transcription activator effector binding; KEGG: aav:Aave_4607 transcription activator, effector binding.


ensembl_gene_id: Amir_6175
symbol: rsgA
gene_biotype: protein_coding
description:
  GTPase EngC; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.


ensembl_gene_id: Amir_6179
symbol: Amir_6179
gene_biotype: protein_coding
description:
  PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: scl:sce0662 LacI family transcription regulator.


ensembl_gene_id: Amir_6185
symbol: Amir_6185
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: vsp:VS_II1529 ABC systems: ATP-binding protein; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Amir_6186
symbol: Amir_6186
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; binding-protein- dependent transport systems inner membrane component; SMART: AAA ATPase; KEGG: mxa:MXAN_6553 putative oligopeptide/dipeptide ABC transporter, permease/ATP-binding protein.


ensembl_gene_id: Amir_6188
symbol: Amir_6188
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: scl:sce4302 ABC-type dipeptide transport system, periplasmic component.


ensembl_gene_id: Amir_6193
symbol: Amir_6193
gene_biotype: protein_coding
description:
  Sarcosine oxidase; PFAM: FAD dependent oxidoreductase; KEGG: sus:Acid_5898 N-methyltryptophan oxidase.


ensembl_gene_id: Amir_6194
symbol: Amir_6194
gene_biotype: protein_coding
description:
  TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: ppd:Ppro_3005 HemK family modification methylase.


ensembl_gene_id: Amir_6195
symbol: Amir_6195
gene_biotype: protein_coding
description:
  Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: scl:sce6417 ECF subfamily RNA polymerase sigma factor.


ensembl_gene_id: Amir_6197
symbol: Amir_6197
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: scl:sce0732 AraC family transcriptional regulator.


ensembl_gene_id: Amir_6200
symbol: Amir_6200
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: bxe:Bxe_C0078 putative zinc-binding dehydrogenase.


ensembl_gene_id: Amir_6203
symbol: Amir_6203
gene_biotype: protein_coding
description:
  PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: afw:Anae109_3817 protein phosphatase 2C-like protein.


ensembl_gene_id: Amir_6205
symbol: Amir_6205
gene_biotype: protein_coding
description:
  Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: beta-lactamase; KEGG: bcb:BCB4264_A3030 alkaline D-peptidase.


ensembl_gene_id: Amir_6206
symbol: Amir_6206
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 18; cellulose- binding family II; SMART: chitinase II; cellulose-binding family II; KEGG: cja:CJA_2611 endo-chitinase, putative, chi18D; Belongs to the glycosyl hydrolase 18 family.


ensembl_gene_id: Amir_6207
symbol: recD2
gene_biotype: protein_coding
description:
  Helicase, RecD/TraA family; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.


ensembl_gene_id: Amir_6208
symbol: Amir_6208
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: glo:Glov_0588 two component transcriptional regulator, winged helix family.


ensembl_gene_id: Amir_6209
symbol: Amir_6209
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: lch:Lcho_2475 histidine kinase.


ensembl_gene_id: Amir_6214
symbol: Amir_6214
gene_biotype: protein_coding
description:
  PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: mlo:mll5046 putative FAD-binding dehydrogenase.


ensembl_gene_id: Amir_6215
symbol: Amir_6215
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: dvu:DVU3313 LysR family transcriptional regulator.


ensembl_gene_id: Amir_6216
symbol: Amir_6216
gene_biotype: protein_coding
description:
  PFAM: NADP oxidoreductase coenzyme F420-dependent; KEGG: ccv:CCV52592_0326 NADP oxidoreductase, coenzyme F420-dependent.


ensembl_gene_id: Amir_6217
symbol: Amir_6217
gene_biotype: protein_coding
description:
  PFAM: flavin reductase domain protein FMN-binding; KEGG: dac:Daci_0096 flavin reductase domain- containing protein.


ensembl_gene_id: Amir_6221
symbol: Amir_6221
gene_biotype: protein_coding
description:
  Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; Tetratricopeptide TPR_4; TPR repeat-containing protein; NB- ARC domain protein; transcriptional regulator domain protein; SMART: AAA ATPase; Tetratricopeptide domain protein; KEGG: scl:sce5225 protein kinase.


ensembl_gene_id: Amir_6223
symbol: Amir_6223
gene_biotype: protein_coding
description:
  Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: pfl:PFL_0190 sensory box-containing diguanylate cyclase, putative; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: GGDEF domain containing protein; PAC repeat- containing protein; EAL domain protein; PAS domain containing protein.


ensembl_gene_id: Amir_6225
symbol: Amir_6225
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; KEGG: aeh:Mlg_1719 acyl-CoA dehydrogenase domain- containing protein.


ensembl_gene_id: Amir_6226
symbol: Amir_6226
gene_biotype: protein_coding
description:
  PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mxa:MXAN_2034 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: Amir_6228
symbol: Amir_6228
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: reu:Reut_C6425 butyryl-CoA dehydrogenase.


ensembl_gene_id: Amir_6229
symbol: Amir_6229
gene_biotype: protein_coding
description:
  PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: mag:amb0674 acetyl-/propionyl-coenzyme A carboxylase alpha chain.


ensembl_gene_id: Amir_6230
symbol: Amir_6230
gene_biotype: protein_coding
description:
  Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: bmj:BMULJ_05049 propionyl-CoA carboxylase beta chain.


ensembl_gene_id: Amir_6238
symbol: Amir_6238
gene_biotype: protein_coding
description:
  PFAM: cellulose-binding family II; Fibronectin type III domain protein; SMART: cellulose-binding family II; Fibronectin type III domain protein; KEGG: azc:AZC_2901 type III fibronectin.


ensembl_gene_id: Amir_6239
symbol: metXA
gene_biotype: protein_coding
description:
  Homoserine O-acetyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine.


ensembl_gene_id: Amir_6240
symbol: Amir_6240
gene_biotype: protein_coding
description:
  O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: bha:BH2603 O-acetylhomoserine aminocarboxypropyltransferase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase.


ensembl_gene_id: Amir_6241
symbol: Amir_6241
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase domain protein; Semialdehyde dehydrogenase NAD - binding; Oxidoreductase domain; KEGG: scl:sce9140 putative oxidoreductase.


ensembl_gene_id: Amir_6245
symbol: Amir_6245
gene_biotype: protein_coding
description:
  PFAM: glutathione peroxidase; KEGG: pap:PSPA7_4682 glutathione peroxidase; Belongs to the glutathione peroxidase family.


ensembl_gene_id: Amir_6246
symbol: Amir_6246
gene_biotype: protein_coding
description:
  KEGG: pap:PSPA7_2808 L-serine dehydratase; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; Belongs to the iron-sulfur dependent L-serine dehydratase family.


ensembl_gene_id: Amir_6248
symbol: Amir_6248
gene_biotype: protein_coding
description:
  KEGG: dar:Daro_2145 L-alanine dehydrogenase; TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; Belongs to the AlaDH/PNT family.


ensembl_gene_id: Amir_6252
symbol: Amir_6252
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: see:SNSL254_A2969 ATP binding cassette.


ensembl_gene_id: Amir_6253
symbol: Amir_6253
gene_biotype: protein_coding
description:
  TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: dehydrogenase E1 component; Transketolase central region; catalytic domain of components of various dehydrogenase complexes; KEGG: sus:Acid_5307 alpha-ketoglutarate decarboxylase.


ensembl_gene_id: Amir_6257
symbol: Amir_6257
gene_biotype: protein_coding
description:
  PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; SMART: helix-turn-helix domain protein; KEGG: ppd:Ppro_0104 helix-turn-helix domain- containing protein.


ensembl_gene_id: Amir_6262
symbol: hutI
gene_biotype: protein_coding
description:
  Imidazolonepropionase; KEGG: pzu:PHZ_c0465 imidazolone-5-propionate hydrolase; TIGRFAM: imidazolonepropionase; PFAM: amidohydrolase; Amidohydrolase 3.


ensembl_gene_id: Amir_6263
symbol: Amir_6263
gene_biotype: protein_coding
description:
  TIGRFAM: formiminoglutamate deiminase; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: pzu:PHZ_c0464 formiminoglutamate deiminase.


ensembl_gene_id: Amir_6264
symbol: Amir_6264
gene_biotype: protein_coding
description:
  KEGG: met:M446_1342 amidase; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20.


ensembl_gene_id: Amir_6266
symbol: Amir_6266
gene_biotype: protein_coding
description:
  Histidine ammonia-lyase; KEGG: scl:sce6082 hypothetical protein; TIGRFAM: histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase.


ensembl_gene_id: Amir_6267
symbol: Amir_6267
gene_biotype: protein_coding
description:
  PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: cti:RALTA_B0569 putative transcriptional regulator, IclR family.


ensembl_gene_id: Amir_6268
symbol: Amir_6268
gene_biotype: protein_coding
description:
  PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: opuAC; substrate-binding region of ABC-type glycine betaine transport system.


ensembl_gene_id: Amir_6269
symbol: Amir_6269
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ABC transporter; K05846 osmoprotectant transport system permease protein.


ensembl_gene_id: Amir_6270
symbol: Amir_6270
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: proline/glycine betaine ABC transporter; K05846 osmoprotectant transport system permease protein.


ensembl_gene_id: Amir_6271
symbol: Amir_6271
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ABC transporter nucleotide binding/ATPase protein (proline/glycine/betaine).


ensembl_gene_id: Amir_6277
symbol: Amir_6277
gene_biotype: protein_coding
description:
  Methyl-accepting chemotaxis sensory transducer; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.


ensembl_gene_id: Amir_6278
symbol: Amir_6278
gene_biotype: protein_coding
description:
  KEGG: tbd:Tbd_1456 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein.


ensembl_gene_id: Amir_6279
symbol: Amir_6279
gene_biotype: protein_coding
description:
  Malate dehydrogenase (oxaloacetate- decarboxylating); PFAM: malic protein NAD-binding; malic protein domain protein; KEGG: bcb:BCB4264_A4713 putative malate dehydrogenase.


ensembl_gene_id: Amir_6280
symbol: Amir_6280
gene_biotype: protein_coding
description:
  KEGG: ecw:EcE24377A_2329 dTDP-4-dehydrorhamnose 3,5- epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related.


ensembl_gene_id: Amir_6281
symbol: Amir_6281
gene_biotype: protein_coding
description:
  Putative phage repressor; TIGRFAM: nickel-type superoxide dismutase maturation protease; PFAM: peptidase S24 and S26 domain protein; KEGG: Peptidase S24-like domain containing protein; K09647 mitochondrial inner membrane protease subunit 1.


ensembl_gene_id: Amir_6282
symbol: Amir_6282
gene_biotype: protein_coding
description:
  KEGG: mmw:Mmwyl1_1415 superoxide dismutase Ni-type; TIGRFAM: superoxide dismutase, Ni; PFAM: Superoxide dismutase Ni-type.


ensembl_gene_id: Amir_6286
symbol: Amir_6286
gene_biotype: protein_coding
description:
  PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: peptidase S1 and S6 chymotrypsin/Hap; KEGG: scl:sce6803 serine protease.


ensembl_gene_id: Amir_6288
symbol: Amir_6288
gene_biotype: protein_coding
description:
  PFAM: diacylglycerol kinase catalytic region; SMART: diacylglycerol kinase catalytic region; KEGG: mag:amb0267 Sphingosine kinase and enzyme related to diacylglycerol kinase.


ensembl_gene_id: Amir_6290
symbol: Amir_6290
gene_biotype: protein_coding
description:
  PFAM: histidine kinase dimerisation/phosphoacceptor; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: pca:Pcar_2710 hypothetical protein.


ensembl_gene_id: Amir_6292
symbol: Amir_6292
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: scl:sce7566 ECF family RNA polymerase sigma factor.


ensembl_gene_id: Amir_6293
symbol: Amir_6293
gene_biotype: protein_coding
description:
  TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: hch:HCH_01964 hypothetical protein; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.


ensembl_gene_id: Amir_6295
symbol: Amir_6295
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF159; KEGG: dal:Dalk_1121 protein of unknown function DUF159; Belongs to the SOS response-associated peptidase family.


ensembl_gene_id: Amir_6296
symbol: aroA
gene_biotype: protein_coding
description:
  3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.


ensembl_gene_id: Amir_6298
symbol: Amir_6298
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: slo:Shew_2437 hypothetical protein.


ensembl_gene_id: Amir_6300
symbol: Amir_6300
gene_biotype: protein_coding
description:
  TIGRFAM: acyltransferase, WS/DGAT/MGAT; PFAM: protein of unknown function UPF0089; KEGG: maq:Maqu_3067 hypothetical protein; Belongs to the long-chain O-acyltransferase family.


ensembl_gene_id: Amir_6301
symbol: Amir_6301
gene_biotype: protein_coding
description:
  Mn2+dependent serine/threonine protein kinase; PFAM: aminoglycoside phosphotransferase; KEGG: mch:Mchl_2091 aminoglycoside phosphotransferase.


ensembl_gene_id: Amir_6302
symbol: Amir_6302
gene_biotype: protein_coding
description:
  TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: sde:Sde_1711 von Willebrand factor, type A; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: Amir_6303
symbol: Amir_6303
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; KEGG: ACAD10; acyl-Coenzyme A dehydrogenase family, member 10; K11729 acyl-CoA dehydrogenase family member 10.


ensembl_gene_id: Amir_6305
symbol: secA-2
gene_biotype: protein_coding
description:
  Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.


ensembl_gene_id: Amir_6306
symbol: hpf
gene_biotype: protein_coding
description:
  Sigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.


ensembl_gene_id: Amir_6309
symbol: Amir_6309
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_2673 heavy metal sensor signal transduction histidine kinase.


ensembl_gene_id: Amir_6310
symbol: Amir_6310
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sat:SYN_00981 response regulator.


ensembl_gene_id: Amir_6322
symbol: Amir_6322
gene_biotype: protein_coding
description:
  PFAM: amino acid permease-associated region; aromatic amino acid permease; KEGG: rpi:Rpic_1962 amino acid permease-associated region.


ensembl_gene_id: Amir_6323
symbol: Amir_6323
gene_biotype: protein_coding
description:
  TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: hch:HCH_04023 Co/Zn/Cd cation transporter.


ensembl_gene_id: Amir_6324
symbol: Amir_6324
gene_biotype: protein_coding
description:
  TIGRFAM: mannose-6-phosphate isomerase, class I; PFAM: mannose-6-phosphate isomerase type I; KEGG: scl:sce4699 mannose-6-phosphate isomerase.


ensembl_gene_id: Amir_6327
symbol: Amir_6327
gene_biotype: protein_coding
description:
  Phosphomannomutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: sgl:SG1115 phosphomannomutase.


ensembl_gene_id: Amir_6333
symbol: Amir_6333
gene_biotype: protein_coding
description:
  TIGRFAM: LPPG domain protein containing protein; PFAM: protein of unknown function UPF0052 and CofD; KEGG: rpb:RPB_4407 LPPG:FO 2-phospho-L-lactate transferase.


ensembl_gene_id: Amir_6334
symbol: Amir_6334
gene_biotype: protein_coding
description:
  TIGRFAM: F420-dependent oxidoreductase; PFAM: protein of unknown function DUF129; nitroreductase; KEGG: pde:Pden_1118 F420-dependent oxidoreductase, putative.


ensembl_gene_id: Amir_6336
symbol: Amir_6336
gene_biotype: protein_coding
description:
  3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase-like protein; KEGG: transcriptional regulator, AraC family.


ensembl_gene_id: Amir_6337
symbol: Amir_6337
gene_biotype: protein_coding
description:
  PFAM: Nucleotidyl transferase; transferase hexapeptide repeat containing protein; KEGG: pca:Pcar_2958 mannose-1-phosphate guanyltransferase.


ensembl_gene_id: Amir_6344
symbol: Amir_6344
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: dal:Dalk_0014 glycosyl transferase family 2.


ensembl_gene_id: Amir_6346
symbol: Amir_6346
gene_biotype: protein_coding
description:
  dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.


ensembl_gene_id: Amir_6347
symbol: Amir_6347
gene_biotype: protein_coding
description:
  TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: dvm:DvMF_0141 dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.


ensembl_gene_id: Amir_6348
symbol: Amir_6348
gene_biotype: protein_coding
description:
  TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: bat:BAS5047 LytR family transcription antiterminator.


ensembl_gene_id: Amir_6349
symbol: Amir_6349
gene_biotype: protein_coding
description:
  TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: hypothetical protein.


ensembl_gene_id: Amir_6352
symbol: Amir_6352
gene_biotype: protein_coding
description:
  Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: sme:SM_b20608 putative transcriptional regulator, ArsR family protein.


ensembl_gene_id: Amir_6358
symbol: Amir_6358
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: met:M446_0773 GntR family transcriptional regulator.


ensembl_gene_id: Amir_6366
symbol: Amir_6366
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: bcb:BCB4264_A5464 acyl-CoA dehydrogenase.


ensembl_gene_id: Amir_6367
symbol: purE
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).


ensembl_gene_id: Amir_6368
symbol: purK
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, ATPase subunit; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).


ensembl_gene_id: Amir_6377
symbol: Amir_6377
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: MUC17; mucin 17, cell surface associated; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Amir_6379
symbol: Amir_6379
gene_biotype: protein_coding
description:
  TIGRFAM: histidinol-phosphate phosphatase; PFAM: inositol monophosphatase; KEGG: ade:Adeh_1287 histidinol-phosphate phosphatase.


ensembl_gene_id: Amir_6380
symbol: Amir_6380
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: mxa:MXAN_5313 DNA-binding response regulator.


ensembl_gene_id: Amir_6381
symbol: Amir_6381
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ade:Adeh_2915 periplasmic sensor signal transduction histidine kinase.


ensembl_gene_id: Amir_6389
symbol: Amir_6389
gene_biotype: protein_coding
description:
  TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; biotin protein ligase domain protein; KEGG: ade:Adeh_2388 biotin--acetyl-CoA-carboxylase ligase.


ensembl_gene_id: Amir_6393
symbol: Amir_6393
gene_biotype: protein_coding
description:
  Maf protein; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.


ensembl_gene_id: Amir_6394
symbol: Amir_6394
gene_biotype: protein_coding
description:
  PFAM: sodium:dicarboxylate symporter; KEGG: mes:Meso_3163 sodium:dicarboxylate symporter; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: Amir_6396
symbol: Amir_6396
gene_biotype: protein_coding
description:
  PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: biotin carboxylase; K01946 biotin carboxylase.


ensembl_gene_id: Amir_6398
symbol: Amir_6398
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bja:bll1358 putative hydrolase.


ensembl_gene_id: Amir_6404
symbol: Amir_6404
gene_biotype: protein_coding
description:
  PFAM: pyridine nucleotide-disulphide oxidoreductase dimerization region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; FAD dependent oxidoreductase; HI0933 family protein; KEGG: bha:BH1825 dihydrolipoamide dehydrogenase.


ensembl_gene_id: Amir_6409
symbol: glpK
gene_biotype: protein_coding
description:
  Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.


ensembl_gene_id: Amir_6410
symbol: Amir_6410
gene_biotype: protein_coding
description:
  PFAM: major intrinsic protein; KEGG: pha:PSHAb0552 putative glycerol diffusion channel; Belongs to the MIP/aquaporin (TC 1.A.8) family.


ensembl_gene_id: Amir_6411
symbol: Amir_6411
gene_biotype: protein_coding
description:
  PFAM: FAD dependent oxidoreductase; monooxygenase FAD-binding; KEGG: vei:Veis_2018 FAD dependent oxidoreductase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: Amir_6415
symbol: Amir_6415
gene_biotype: protein_coding
description:
  TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerization domain protein; KEGG: pla:Plav_2614 amidohydrolase; Belongs to the peptidase M20A family.


ensembl_gene_id: Amir_6417
symbol: Amir_6417
gene_biotype: protein_coding
description:
  TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; KEGG: rru:Rru_A2478 arginine/ornithine transport system ATPase.


ensembl_gene_id: Amir_6418
symbol: Amir_6418
gene_biotype: protein_coding
description:
  methylmalonyl-CoA mutase, large subunit; KEGG: rru:Rru_A2479 methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12- binding domain protein.


ensembl_gene_id: Amir_6420
symbol: Amir_6420
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: pau:PA14_00875 serine/threonine protein kinase PpkA.


ensembl_gene_id: Amir_6421
symbol: Amir_6421
gene_biotype: protein_coding
description:
  Purine nucleotide phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.


ensembl_gene_id: Amir_6422
symbol: Amir_6422
gene_biotype: protein_coding
description:
  Phosphomannomutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: scl:sce4837 putative phosphoglucomutase/phosphomannomutase.


ensembl_gene_id: Amir_6425
symbol: Amir_6425
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; SMART: regulatory protein MerR; KEGG: mag:amb3964 transcriptional regulator.


ensembl_gene_id: Amir_6426
symbol: Amir_6426
gene_biotype: protein_coding
description:
  PFAM: filamentation induced by cAMP protein Fic; KEGG: acp:A2cp1_3061 death-on-curing family protein.


ensembl_gene_id: Amir_6427
symbol: Amir_6427
gene_biotype: protein_coding
description:
  PFAM: CopG domain protein DNA-binding domain protein; KEGG: tgr:Tgr7_2434 CopG domain protein DNA-binding domain protein.


ensembl_gene_id: Amir_6429
symbol: upp
gene_biotype: protein_coding
description:
  Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.


ensembl_gene_id: Amir_6431
symbol: Amir_6431
gene_biotype: protein_coding
description:
  PFAM: WD-40 repeat protein; pentapeptide repeat protein; SMART: WD-40 repeat protein; KEGG: scl:sce3623 hypothetical protein.


ensembl_gene_id: Amir_6432
symbol: Amir_6432
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase domain protein; Semialdehyde dehydrogenase NAD - binding; Oxidoreductase domain; KEGG: hypothetical protein.


ensembl_gene_id: Amir_6444
symbol: Amir_6444
gene_biotype: protein_coding
description:
  Chromosome segregation ATPase-like protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.


ensembl_gene_id: Amir_6446
symbol: add
gene_biotype: protein_coding
description:
  KEGG: afw:Anae109_0100 adenosine deaminase; TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family. Adenosine deaminase subfamily.


ensembl_gene_id: Amir_6449
symbol: Amir_6449
gene_biotype: protein_coding
description:
  KEGG: mxa:MXAN_5710 pyrimidine-nucleoside phosphorylase; TIGRFAM: pyrimidine-nucleoside phosphorylase; PFAM: glycosyl transferase family 3; Pyrimidine nucleoside phosphorylase domain; Glycosyl transferase, family 3-like.


ensembl_gene_id: Amir_6451
symbol: Amir_6451
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: bcz:BCZK3548 ABC transporter, permease; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Amir_6452
symbol: Amir_6452
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: scl:sce7757 ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Amir_6453
symbol: Amir_6453
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: scl:sce7755 sugar ABC transporter, ATP- binding protein.


ensembl_gene_id: Amir_6462
symbol: Amir_6462
gene_biotype: protein_coding
description:
  TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: jan:Jann_3968 succinate dehydrogenase subunit C.


ensembl_gene_id: Amir_6464
symbol: Amir_6464
gene_biotype: protein_coding
description:
  KEGG: sfu:Sfum_2104 succinate dehydrogenase, flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; succinate dehydrogenase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase.


ensembl_gene_id: Amir_6465
symbol: Amir_6465
gene_biotype: protein_coding
description:
  TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: sfu:Sfum_2103 succinate dehydrogenase and fumarate reductase iron-sulfur protein.


ensembl_gene_id: Amir_6466
symbol: Amir_6466
gene_biotype: protein_coding
description:
  Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: rpc:RPC_4073 serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.


ensembl_gene_id: Amir_6470
symbol: trpS
gene_biotype: protein_coding
description:
  tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: Amir_6472
symbol: Amir_6472
gene_biotype: protein_coding
description:
  PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: swi:Swit_0717 FO synthase.


ensembl_gene_id: Amir_6475
symbol: Amir_6475
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease III Xth; KEGG: nma:NMA0348 putative nuclease; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase.


ensembl_gene_id: Amir_6478
symbol: Amir_6478
gene_biotype: protein_coding
description:
  KEGG: oca:OCAR_5440 isocitrate dehydrogenase, NADP- dependent; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; Belongs to the isocitrate and isopropylmalate dehydrogenases family.


ensembl_gene_id: Amir_6479
symbol: Amir_6479
gene_biotype: protein_coding
description:
  PFAM: membrane-bound metal-dependent hydrolase; KEGG: mag:amb4172 membrane-bound metal-dependent hydrolase.


ensembl_gene_id: Amir_6481
symbol: Amir_6481
gene_biotype: protein_coding
description:
  PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: rle:pRL110201 putative chaperone.


ensembl_gene_id: Amir_6482
symbol: Amir_6482
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: mxa:MXAN_2255 serine/threonine protein kinase.


ensembl_gene_id: Amir_6485
symbol: Amir_6485
gene_biotype: protein_coding
description:
  ABC-type uncharacterized transport system permease component-like protein; KEGG: reu:Reut_A1068 putative ABC transporter permease protein.


ensembl_gene_id: Amir_6487
symbol: Amir_6487
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: scl:sce6750 ABC transporter, ATP-binding protein.


ensembl_gene_id: Amir_6492
symbol: mdh
gene_biotype: protein_coding
description:
  Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.


ensembl_gene_id: Amir_6498
symbol: folD-2
gene_biotype: protein_coding
description:
  Methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.


ensembl_gene_id: Amir_6503
symbol: purH
gene_biotype: protein_coding
description:
  KEGG: acr:Acry_0027 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein; SMART: AICARFT/IMPCHase bienzyme formylation region.


ensembl_gene_id: Amir_6504
symbol: purN
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.


ensembl_gene_id: Amir_6505
symbol: Amir_6505
gene_biotype: protein_coding
description:
  AAA ATPase containing von Willebrand factor type A (vWA) domain; KEGG: hypothetical protein LOC690456.


ensembl_gene_id: Amir_6507
symbol: sucD
gene_biotype: protein_coding
description:
  succinyl-CoA synthetase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.


ensembl_gene_id: Amir_6508
symbol: sucC
gene_biotype: protein_coding
description:
  succinyl-CoA synthetase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.


ensembl_gene_id: Amir_6513
symbol: Amir_6513
gene_biotype: protein_coding
description:
  TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: bsu:BSU06610 ATP-dependent DNA helicase.


ensembl_gene_id: Amir_6515
symbol: Amir_6515
gene_biotype: protein_coding
description:
  PFAM: histone deacetylase superfamily; KEGG: HDA08; HDA08 (histone deacetylase 8); histone deacetylase.


ensembl_gene_id: Amir_6517
symbol: Amir_6517
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: Taf4a; TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor; K03129 transcription initiation factor TFIID subunit D3.


ensembl_gene_id: Amir_6520
symbol: Amir_6520
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: mxa:MXAN_4017 serine/threonine protein kinase.


ensembl_gene_id: Amir_6523
symbol: Amir_6523
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF6 transmembrane; Protein of unknown function DUF250; KEGG: hypothetical protein.


ensembl_gene_id: Amir_6525
symbol: Amir_6525
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver; KEGG: eba:ebA6278 nitrate/nitrite response regulator.


ensembl_gene_id: Amir_6526
symbol: Amir_6526
gene_biotype: protein_coding
description:
  Putative signal transduction histidine kinase; PFAM: PspC domain protein; ATP-binding region ATPase domain protein; KEGG: sus:Acid_2189 histidine kinase.


ensembl_gene_id: Amir_6527
symbol: Amir_6527
gene_biotype: protein_coding
description:
  Phage shock protein C, PspC; PFAM: PspC domain protein; KEGG: aba:Acid345_1324 phage shock protein C, PspC.


ensembl_gene_id: Amir_6535
symbol: guaB
gene_biotype: protein_coding
description:
  Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.


ensembl_gene_id: Amir_6539
symbol: Amir_6539
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; SMART: regulatory protein LuxR; response regulator receiver; KEGG: smt:Smal_2340 two component transcriptional regulator, LuxR family.


ensembl_gene_id: Amir_6541
symbol: Amir_6541
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: mxa:MXAN_0904 B12 binding domain/transcriptional regulator, MerR family.


ensembl_gene_id: Amir_6544
symbol: groS
gene_biotype: protein_coding
description:
  Chaperonin Cpn10; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.


ensembl_gene_id: Amir_6546
symbol: tsaD
gene_biotype: protein_coding
description:
  Metalloendopeptidase, glycoprotease family; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.


ensembl_gene_id: Amir_6547
symbol: Amir_6547
gene_biotype: protein_coding
description:
  Ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18.


ensembl_gene_id: Amir_6548
symbol: Amir_6548
gene_biotype: protein_coding
description:
  PFAM: peptidase M22 glycoprotease; KEGG: pzu:PHZ_c3457 metal-dependent protease (with possible chaperone activity).


ensembl_gene_id: Amir_6549
symbol: Amir_6549
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: rpa:RPA4825 MerR family transcriptional regulator.


ensembl_gene_id: Amir_6551
symbol: Amir_6551
gene_biotype: protein_coding
description:
  PFAM: AMP-dependent synthetase and ligase; KEGG: mxa:MXAN_7148 putative long-chain fatty acid-- CoA ligase.


ensembl_gene_id: Amir_6556
symbol: Amir_6556
gene_biotype: protein_coding
description:
  Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.


ensembl_gene_id: Amir_6557
symbol: nnrD
gene_biotype: protein_coding
description:
  Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.  Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow t [...]


ensembl_gene_id: Amir_6558
symbol: glmS
gene_biotype: protein_coding
description:
  Glucosamine/fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.


ensembl_gene_id: Amir_6563
symbol: glmM
gene_biotype: protein_coding
description:
  Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.


ensembl_gene_id: Amir_6564
symbol: rpsI
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein S9; KEGG: bha:BH0169 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.


ensembl_gene_id: Amir_6565
symbol: rplM
gene_biotype: protein_coding
description:
  Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.


ensembl_gene_id: Amir_6572
symbol: Amir_6572
gene_biotype: protein_coding
description:
  TIGRFAM: secretion protein snm4; PFAM: protein of unknown function DUF571; KEGG: hypothetical protein.


ensembl_gene_id: Amir_6580
symbol: Amir_6580
gene_biotype: protein_coding
description:
  PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Proprotein convertase P; proteinase inhibitor I9 subtilisin propeptide; KEGG: mca:MCA0875 serine protease.


ensembl_gene_id: Amir_6581
symbol: truA
gene_biotype: protein_coding
description:
  tRNA-pseudouridine synthase I; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.


ensembl_gene_id: Amir_6582
symbol: rplQ
gene_biotype: protein_coding
description:
  TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: dol:Dole_0734 ribosomal protein L17.


ensembl_gene_id: Amir_6583
symbol: rpoA
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: Amir_6584
symbol: rpsD
gene_biotype: protein_coding
description:
  Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.


ensembl_gene_id: Amir_6585
symbol: rpsK
gene_biotype: protein_coding
description:
  Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.


ensembl_gene_id: Amir_6586
symbol: rpsM
gene_biotype: protein_coding
description:
  Ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.


ensembl_gene_id: Amir_6587
symbol: rpmJ
gene_biotype: protein_coding
description:
  TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: aba:Acid345_1250 LSU ribosomal protein L36P; Belongs to the bacterial ribosomal protein bL36 family.


ensembl_gene_id: Amir_6588
symbol: infA
gene_biotype: protein_coding
description:
  Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.


ensembl_gene_id: Amir_6593
symbol: adk
gene_biotype: protein_coding
description:
  Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.


ensembl_gene_id: Amir_6594
symbol: secY
gene_biotype: protein_coding
description:
  Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.


ensembl_gene_id: Amir_6595
symbol: rplO
gene_biotype: protein_coding
description:
  Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.


ensembl_gene_id: Amir_6596
symbol: rpmD
gene_biotype: protein_coding
description:
  TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30; KEGG: bbr:BB0049 50S ribosomal protein L30.


ensembl_gene_id: Amir_6597
symbol: rpsE
gene_biotype: protein_coding
description:
  Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.


ensembl_gene_id: Amir_6598
symbol: rplR
gene_biotype: protein_coding
description:
  Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.


ensembl_gene_id: Amir_6599
symbol: rplF
gene_biotype: protein_coding
description:
  Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.


ensembl_gene_id: Amir_6600
symbol: rpsH
gene_biotype: protein_coding
description:
  Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.


ensembl_gene_id: Amir_6601
symbol: rpsZ
gene_biotype: protein_coding
description:
  Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.


ensembl_gene_id: Amir_6602
symbol: rplE
gene_biotype: protein_coding
description:
  Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.


ensembl_gene_id: Amir_6603
symbol: rplX
gene_biotype: protein_coding
description:
  Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.


ensembl_gene_id: Amir_6604
symbol: rplN
gene_biotype: protein_coding
description:
  Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.


ensembl_gene_id: Amir_6605
symbol: rpsQ
gene_biotype: protein_coding
description:
  Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.


ensembl_gene_id: Amir_6606
symbol: rpmC
gene_biotype: protein_coding
description:
  TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: bha:BH0142 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.


ensembl_gene_id: Amir_6607
symbol: rplP
gene_biotype: protein_coding
description:
  Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.


ensembl_gene_id: Amir_6608
symbol: rpsC
gene_biotype: protein_coding
description:
  Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.


ensembl_gene_id: Amir_6609
symbol: rplV
gene_biotype: protein_coding
description:
  Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.


ensembl_gene_id: Amir_6610
symbol: rpsS
gene_biotype: protein_coding
description:
  Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.


ensembl_gene_id: Amir_6611
symbol: rplB
gene_biotype: protein_coding
description:
  Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.


ensembl_gene_id: Amir_6612
symbol: rplW
gene_biotype: protein_coding
description:
  Ribosomal protein L25/L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.


ensembl_gene_id: Amir_6614
symbol: rplC
gene_biotype: protein_coding
description:
  Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.


ensembl_gene_id: Amir_6615
symbol: rpsJ
gene_biotype: protein_coding
description:
  Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.


ensembl_gene_id: Amir_6616
symbol: tuf
gene_biotype: protein_coding
description:
  Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.


ensembl_gene_id: Amir_6617
symbol: fusA
gene_biotype: protein_coding
description:
  Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]


ensembl_gene_id: Amir_6618
symbol: rpsG
gene_biotype: protein_coding
description:
  Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.


ensembl_gene_id: Amir_6619
symbol: rpsL
gene_biotype: protein_coding
description:
  Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.


ensembl_gene_id: Amir_6626
symbol: rpoC
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: Amir_6627
symbol: rpoB
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: Amir_6630
symbol: Amir_6630
gene_biotype: protein_coding
description:
  ABC-type transport system involved in resistance to organic solvents periplasmic component; KEGG: rce:RC1_1665 HAMP domain protein.


ensembl_gene_id: Amir_6631
symbol: Amir_6631
gene_biotype: protein_coding
description:
  PFAM: Mammalian cell entry related domain protein; KEGG: rce:RC1_0924 ABC transporter substrate binding protein, putative.


ensembl_gene_id: Amir_6632
symbol: Amir_6632
gene_biotype: protein_coding
description:
  PFAM: Mammalian cell entry related domain protein; KEGG: gme:Gmet_1272 virulence factor MCE-like protein-related protein.


ensembl_gene_id: Amir_6634
symbol: Amir_6634
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF140; KEGG: ade:Adeh_1863 ABC amino acid transporter, inner membrane subunit.


ensembl_gene_id: Amir_6635
symbol: Amir_6635
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sat:SYN_00410 ABC-type transport system, ATP- binding component.


ensembl_gene_id: Amir_6636
symbol: rplL
gene_biotype: protein_coding
description:
  Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.


ensembl_gene_id: Amir_6637
symbol: rplJ
gene_biotype: protein_coding
description:
  Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.


ensembl_gene_id: Amir_6639
symbol: rplA
gene_biotype: protein_coding
description:
  Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.


ensembl_gene_id: Amir_6640
symbol: rplK
gene_biotype: protein_coding
description:
  Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.


ensembl_gene_id: Amir_6641
symbol: nusG
gene_biotype: protein_coding
description:
  NusG antitermination factor; Participates in transcription elongation, termination and antitermination.


ensembl_gene_id: Amir_6642
symbol: secE
gene_biotype: protein_coding
description:
  Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.


ensembl_gene_id: Amir_6643
symbol: Amir_6643
gene_biotype: protein_coding
description:
  PFAM: aminotransferase class I and II; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: gur:Gura_2501 aminotransferase, class I and II.


ensembl_gene_id: Amir_6648
symbol: rpmG-2
gene_biotype: protein_coding
description:
  TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: ribosomal protein L33; K02913 large subunit ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.


ensembl_gene_id: Amir_6649
symbol: Amir_6649
gene_biotype: protein_coding
description:
  Diguanylate cyclase/phosphodiesterase with GAF sensor; KEGG: xac:XAC2711 phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; GAF domain protein; SMART: EAL domain protein; GGDEF domain containing protein; GAF domain protein.


ensembl_gene_id: Amir_6653
symbol: Amir_6653
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF520; KEGG: gur:Gura_0717 nucleotide-binding protein; Belongs to the UPF0234 family.


ensembl_gene_id: Amir_6654
symbol: Amir_6654
gene_biotype: protein_coding
description:
  Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.


ensembl_gene_id: Amir_6655
symbol: htpX
gene_biotype: protein_coding
description:
  PFAM: peptidase M48 Ste24p; KEGG: bxe:Bxe_A4413 heat shock protein HtpX; Belongs to the peptidase M48B family.


ensembl_gene_id: Amir_6656
symbol: Amir_6656
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ank:AnaeK_1272 4Fe-4S ferredoxin iron-sulfur binding domain protein.


ensembl_gene_id: Amir_6657
symbol: Amir_6657
gene_biotype: protein_coding
description:
  PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: mrd:Mrad2831_2058 NADH (or F420H2) dehydrogenase, subunit C.


ensembl_gene_id: Amir_6658
symbol: Amir_6658
gene_biotype: protein_coding
description:
  TIGRFAM: NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: gbm:Gbem_3925 NADH-quinone oxidoreductase, B subunit.


ensembl_gene_id: Amir_6659
symbol: Amir_6659
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; KEGG: rpb:RPB_4498 hypothetical protein.


ensembl_gene_id: Amir_6662
symbol: Amir_6662
gene_biotype: protein_coding
description:
  PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: bvi:Bcep1808_5003 AsnC family transcriptional regulator.


ensembl_gene_id: Amir_6664
symbol: Amir_6664
gene_biotype: protein_coding
description:
  PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: eba:ebA3149 2-oxoglutarate ferredoxin oxidoreductase alpha subunit.


ensembl_gene_id: Amir_6665
symbol: Amir_6665
gene_biotype: protein_coding
description:
  PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: eba:ebA3150 2-oxoglutarate ferredoxin oxidoreductase subunit beta.


ensembl_gene_id: Amir_6667
symbol: Amir_6667
gene_biotype: protein_coding
description:
  TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: cvi:CV_0304 RarD protein, chloamphenicol sensitive.


ensembl_gene_id: Amir_6668
symbol: Amir_6668
gene_biotype: protein_coding
description:
  PFAM: Polyprenyl synthetase; KEGG: sit:TM1040_3742 farnesyltranstransferase; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: Amir_6669
symbol: nuoN
gene_biotype: protein_coding
description:
  Proton-translocating NADH-quinone oxidoreductase, chain N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family.


ensembl_gene_id: Amir_6670
symbol: Amir_6670
gene_biotype: protein_coding
description:
  KEGG: mgm:Mmc1_3623 proton-translocating NADH- quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I).


ensembl_gene_id: Amir_6671
symbol: Amir_6671
gene_biotype: protein_coding
description:
  KEGG: glo:Glov_3127 proton-translocating NADH- quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein.


ensembl_gene_id: Amir_6672
symbol: nuoK
gene_biotype: protein_coding
description:
  NADH-ubiquinone oxidoreductase chain 4L; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family.


ensembl_gene_id: Amir_6673
symbol: Amir_6673
gene_biotype: protein_coding
description:
  NADH-ubiquinone/plastoquinone oxidoreductase chain 6; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: Amir_6674
symbol: nuoI
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: Amir_6675
symbol: nuoH
gene_biotype: protein_coding
description:
  NADH dehydrogenase (quinone); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.


ensembl_gene_id: Amir_6676
symbol: Amir_6676
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.


ensembl_gene_id: Amir_6677
symbol: Amir_6677
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, F subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.


ensembl_gene_id: Amir_6678
symbol: Amir_6678
gene_biotype: protein_coding
description:
  PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: mag:amb2783 NADH:ubiquinone oxidoreductase 24 kD subunit.


ensembl_gene_id: Amir_6679
symbol: nuoD
gene_biotype: protein_coding
description:
  NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.


ensembl_gene_id: Amir_6680
symbol: nuoC
gene_biotype: protein_coding
description:
  NADH (or F420H2) dehydrogenase, subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family.


ensembl_gene_id: Amir_6681
symbol: nuoB
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, B subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: Amir_6682
symbol: nuoA
gene_biotype: protein_coding
description:
  NADH-ubiquinone/plastoquinone oxidoreductase chain 3; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family.


ensembl_gene_id: Amir_6683
symbol: Amir_6683
gene_biotype: protein_coding
description:
  TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; Lycopene beta and epsilon cyclase; KEGG: pna:Pnap_1343 geranylgeranyl reductase.


ensembl_gene_id: Amir_6684
symbol: menG
gene_biotype: protein_coding
description:
  Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2).


ensembl_gene_id: Amir_6688
symbol: Amir_6688
gene_biotype: protein_coding
description:
  TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: azo:azo0308 phenylacetic acid degradation NADH oxidoreductase PaaE.


ensembl_gene_id: Amir_6689
symbol: Amir_6689
gene_biotype: protein_coding
description:
  TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; KEGG: mno:Mnod_7196 phenylacetate-CoA oxygenase, PaaJ subunit.


ensembl_gene_id: Amir_6690
symbol: Amir_6690
gene_biotype: protein_coding
description:
  TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: rpd:RPD_1826 phenylacetate-CoA oxygenase, PaaI subunit.


ensembl_gene_id: Amir_6691
symbol: Amir_6691
gene_biotype: protein_coding
description:
  TIGRFAM: phenylacetate-CoA oxygenase, PaaH subunit; PFAM: phenylacetic acid degradation B; KEGG: pde:Pden_4809 phenylacetate-CoA oxygenase, PaaH subunit.


ensembl_gene_id: Amir_6692
symbol: Amir_6692
gene_biotype: protein_coding
description:
  TIGRFAM: phenylacetate-CoA oxygenase, PaaG subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: cti:RALTA_A2973 subunit of multicomponent oxygenase, phenylacetic acid degradation with ferritin- like domain.


ensembl_gene_id: Amir_6694
symbol: Amir_6694
gene_biotype: protein_coding
description:
  TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like; KEGG: scl:sce5042 hypothetical protein.


ensembl_gene_id: Amir_6696
symbol: Amir_6696
gene_biotype: protein_coding
description:
  PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: sbp:Sbal223_2267 pyridoxal-5'-phosphate- dependent protein beta subunit.


ensembl_gene_id: Amir_6698
symbol: menA
gene_biotype: protein_coding
description:
  1,4-dihydroxy-2-naphthoateoctaprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily.


ensembl_gene_id: Amir_6701
symbol: menB
gene_biotype: protein_coding
description:
  Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily.


ensembl_gene_id: Amir_6702
symbol: menD
gene_biotype: protein_coding
description:
  2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylic acid synthase/2-oxoglutarate decarboxylase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily.


ensembl_gene_id: Amir_6703
symbol: Amir_6703
gene_biotype: protein_coding
description:
  PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: sus:Acid_2560 peptidase M1, membrane alanine aminopeptidase.


ensembl_gene_id: Amir_6705
symbol: Amir_6705
gene_biotype: protein_coding
description:
  PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: xca:xccb100_3044 transcriptional regulator.


ensembl_gene_id: Amir_6709
symbol: Amir_6709
gene_biotype: protein_coding
description:
  TIGRFAM: DNA binding domain protein, excisionase family; PFAM: regulatory protein MerR; KEGG: cps:CPS_1619 DNA-binding response regulator.


ensembl_gene_id: Amir_6712
symbol: Amir_6712
gene_biotype: protein_coding
description:
  TIGRFAM: cytochrome c-type biogenesis protein CcsB; PFAM: cytochrome c assembly protein; KEGG: pca:Pcar_3065 cytochrome c biogenesis protein.


ensembl_gene_id: Amir_6714
symbol: Amir_6714
gene_biotype: protein_coding
description:
  PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: rpd:RPD_4260 cytochrome c biogenesis protein, transmembrane region.


ensembl_gene_id: Amir_6716
symbol: Amir_6716
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: mlo:mll2594 quinone oxidoreductase.


ensembl_gene_id: Amir_6717
symbol: Amir_6717
gene_biotype: protein_coding
description:
  PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sfr:Sfri_1234 redoxin domain protein.


ensembl_gene_id: Amir_6719
symbol: hemL
gene_biotype: protein_coding
description:
  TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; aminotransferase class I and II; KEGG: bbr:BB4409 glutamate-1-semialdehyde 2,1- aminomutase.


ensembl_gene_id: Amir_6727
symbol: Amir_6727
gene_biotype: protein_coding
description:
  Porphobilinogen synthase; PFAM: delta-aminolevulinic acid dehydratase; KEGG: afw:Anae109_1415 delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.


ensembl_gene_id: Amir_6728
symbol: Amir_6728
gene_biotype: protein_coding
description:
  PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: sfu:Sfum_3201 uroporphyrin-III C- methyltransferase.


ensembl_gene_id: Amir_6729
symbol: hemC
gene_biotype: protein_coding
description:
  Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.


ensembl_gene_id: Amir_6730
symbol: hemA
gene_biotype: protein_coding
description:
  glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).


ensembl_gene_id: Amir_6731
symbol: rex
gene_biotype: protein_coding
description:
  CoA-binding domain protein; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.


ensembl_gene_id: Amir_6736
symbol: Amir_6736
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: aba:Acid345_3132 sigma-24, ECF subfamily.


ensembl_gene_id: Amir_6738
symbol: Amir_6738
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase, subfamily IB (PSPase- like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pag:PLES_41761 putative phosphoserine phosphatase.


ensembl_gene_id: Amir_6739
symbol: Amir_6739
gene_biotype: protein_coding
description:
  PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: dal:Dalk_1813 phospholipid/glycerol acyltransferase.


ensembl_gene_id: Amir_6740
symbol: Amir_6740
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; short-chain dehydrogenase/reductase SDR; KEGG: dal:Dalk_1814 NAD-dependent epimerase/dehydratase.


ensembl_gene_id: Amir_6742
symbol: Amir_6742
gene_biotype: protein_coding
description:
  TIGRFAM: DNA binding domain protein, excisionase family; KEGG: afw:Anae109_1068 DNA binding domain- containing protein.


ensembl_gene_id: Amir_6743
symbol: proC
gene_biotype: protein_coding
description:
  Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.


ensembl_gene_id: Amir_6746
symbol: Amir_6746
gene_biotype: protein_coding
description:
  PFAM: Xylose isomerase domain protein TIM barrel; KEGG: gbm:Gbem_1512 xylose isomerase domain protein TIM barrel.


ensembl_gene_id: Amir_6750
symbol: Amir_6750
gene_biotype: protein_coding
description:
  Histidine kinase; KEGG: glo:Glov_0589 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.


ensembl_gene_id: Amir_6753
symbol: gpmA
gene_biotype: protein_coding
description:
  Phosphoglycerate mutase 1 family; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.


ensembl_gene_id: Amir_6757
symbol: mshA
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine; Catalyzes the transfer of a N-acetyl-glucosamine moiety to 1D-myo-inositol 3-phosphate to produce 1D-myo-inositol 2-acetamido-2- deoxy-glucopyranoside 3-phosphate in the mycothiol biosynthesis pathway.


ensembl_gene_id: Amir_6759
symbol: Amir_6759
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: scl:sce8093 putative oxidoreductase.


ensembl_gene_id: Amir_6765
symbol: purU
gene_biotype: protein_coding
description:
  Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).


ensembl_gene_id: Amir_6769
symbol: Amir_6769
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; PFAM: TipAS antibiotic-recognition domain protein; regulatory protein MerR; SMART: regulatory protein MerR; KEGG: ccs:CCNA_00730 transcriptional regulator SkgA.


ensembl_gene_id: Amir_6770
symbol: Amir_6770
gene_biotype: protein_coding
description:
  TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: psa:PST_4009 protease PfpI.


ensembl_gene_id: Amir_6774
symbol: Amir_6774
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: azc:AZC_2073 XRE family-like protein.


ensembl_gene_id: Amir_6775
symbol: Amir_6775
gene_biotype: protein_coding
description:
  PFAM: protein-L-isoaspartate(D-aspartate) O- methyltransferase; KEGG: mex:Mext_4262 protein-L-isoaspartate O- methyltransferase.


ensembl_gene_id: Amir_6777
symbol: Amir_6777
gene_biotype: protein_coding
description:
  PFAM: aminotransferase class I and II; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mxa:MXAN_3751 aminotransferase, classes I and II.


ensembl_gene_id: Amir_6781
symbol: Amir_6781
gene_biotype: protein_coding
description:
  PFAM: transcriptional regulator PadR family protein; KEGG: nar:Saro_2546 PadR family transcriptional regulator.


ensembl_gene_id: Amir_6782
symbol: Amir_6782
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tgr:Tgr7_1366 lipoprotein releasing system, ATP-binding protein.


ensembl_gene_id: Amir_6790
symbol: Amir_6790
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family with aminotransferase domain; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: pzu:PHZ_c3113 transcriptional regulator, GntR family.


ensembl_gene_id: Amir_6797
symbol: Amir_6797
gene_biotype: protein_coding
description:
  PFAM: Heavy metal transport/detoxification protein; KEGG: dvm:DvMF_3169 heavy metal transport/detoxification protein.


ensembl_gene_id: Amir_6798
symbol: Amir_6798
gene_biotype: protein_coding
description:
  TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: bsu:BSU33500 hypothetical protein.


ensembl_gene_id: Amir_6801
symbol: Amir_6801
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: bsu:BSU27440 glutamine ABC transporter (glutamine-binding protein).


ensembl_gene_id: Amir_6807
symbol: Amir_6807
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bac:BamMC406_6306 alcohol dehydrogenase.


ensembl_gene_id: Amir_6811
symbol: Amir_6811
gene_biotype: protein_coding
description:
  TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.


ensembl_gene_id: Amir_6813
symbol: Amir_6813
gene_biotype: protein_coding
description:
  KEGG: rfr:Rfer_4028 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein.


ensembl_gene_id: Amir_6814
symbol: Amir_6814
gene_biotype: protein_coding
description:
  TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: SL44-1; basic proline-rich protein.


ensembl_gene_id: Amir_6818
symbol: pstB
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, ATPase subunit; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.


ensembl_gene_id: Amir_6819
symbol: Amir_6819
gene_biotype: protein_coding
description:
  TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tbd:Tbd_1138 phosphate transport system permease protein 2.


ensembl_gene_id: Amir_6820
symbol: Amir_6820
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, inner membrane subunit PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: Amir_6821
symbol: Amir_6821
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, periplasmic phosphate- binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.


ensembl_gene_id: Amir_6822
symbol: mshD
gene_biotype: protein_coding
description:
  Mycothiol biosynthesis acetyltransferase; Catalyzes the transfer of acetyl from acetyl-CoA to desacetylmycothiol (Cys-GlcN-Ins) to form mycothiol.


ensembl_gene_id: Amir_6823
symbol: Amir_6823
gene_biotype: protein_coding
description:
  Putative two component transcriptional regulator, winged helix family; PFAM: transcriptional regulator domain protein; KEGG: bha:BH3157 two-component response regulator involved in phosphate regulation.


ensembl_gene_id: Amir_6824
symbol: Amir_6824
gene_biotype: protein_coding
description:
  Dipeptidylaminopeptidase/acylaminoacyl- peptidase-like protein; KEGG: bha:BH1308 hypothetical protein.


ensembl_gene_id: Amir_6828
symbol: Amir_6828
gene_biotype: protein_coding
description:
  PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: cja:CJA_2345 rhodanese-like domain protein.


ensembl_gene_id: Amir_6831
symbol: Amir_6831
gene_biotype: protein_coding
description:
  Domain of unknown function DUF1794; May play a role in the intracellular transport of hydrophobic ligands.


ensembl_gene_id: Amir_6832
symbol: Amir_6832
gene_biotype: protein_coding
description:
  PFAM: Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 1; KEGG: aav:Aave_3511 allophanate hydrolase subunit 2.


ensembl_gene_id: Amir_6834
symbol: Amir_6834
gene_biotype: protein_coding
description:
  Urea amidolyase related protein; KEGG: aav:Aave_3511 allophanate hydrolase subunit 2; TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; SMART: Allophanate hydrolase subunit 2.


ensembl_gene_id: Amir_6836
symbol: Amir_6836
gene_biotype: protein_coding
description:
  Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: ank:AnaeK_2300 ferric uptake regulator, Fur family; Belongs to the Fur family.


ensembl_gene_id: Amir_6837
symbol: Amir_6837
gene_biotype: protein_coding
description:
  TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: mxa:MXAN_6341 glycine cleavage system T protein; Belongs to the GcvT family.


ensembl_gene_id: Amir_6838
symbol: Amir_6838
gene_biotype: protein_coding
description:
  3-keto-5-aminohexanoate cleavage enzyme; PFAM: protein of unknown function DUF849; KEGG: rfr:Rfer_3885 hypothetical protein.


ensembl_gene_id: Amir_6846
symbol: Amir_6846
gene_biotype: protein_coding
description:
  PFAM: thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding; thiamine pyrophosphate protein TPP binding domain protein; KEGG: bid:Bind_2834 thiamine pyrophosphate protein central region; Belongs to the TPP enzyme family.


ensembl_gene_id: Amir_6847
symbol: Amir_6847
gene_biotype: protein_coding
description:
  PFAM: Myo-inositol catabolism IolB domain protein; KEGG: sus:Acid_1480 myo-inositol catabolism IolB domain-containing protein.


ensembl_gene_id: Amir_6850
symbol: Amir_6850
gene_biotype: protein_coding
description:
  Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: acr:Acry_2317 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Amir_6851
symbol: Amir_6851
gene_biotype: protein_coding
description:
  PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: acr:Acry_2318 ABC-type sugar transport system periplasmic component-like protein.


ensembl_gene_id: Amir_6852
symbol: Amir_6852
gene_biotype: protein_coding
description:
  PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sit:TM1040_3346 xylose isomerase-like TIM barrel.


ensembl_gene_id: Amir_6853
symbol: Amir_6853
gene_biotype: protein_coding
description:
  Inositol 2-dehydrogenase; PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bbt:BBta_0488 inositol 2-dehydrogenase.


ensembl_gene_id: Amir_6854
symbol: Amir_6854
gene_biotype: protein_coding
description:
  PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: pmr:PMI0088 ribose operon repressor (LacI- family transcriptional regulator).


ensembl_gene_id: Amir_6855
symbol: Amir_6855
gene_biotype: protein_coding
description:
  PFAM: Class I peptide chain release factor; KEGG: rpi:Rpic_3102 class I peptide chain release factor.


ensembl_gene_id: Amir_6858
symbol: purM
gene_biotype: protein_coding
description:
  KEGG: mxa:MXAN_2701 phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: phosphoribosylformylglycinamidine cyclo- ligase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein.


ensembl_gene_id: Amir_6859
symbol: purF
gene_biotype: protein_coding
description:
  Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.


ensembl_gene_id: Amir_6870
symbol: Amir_6870
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: scl:sce1528 glucose 1-dehydrogenase.


ensembl_gene_id: Amir_6871
symbol: Amir_6871
gene_biotype: protein_coding
description:
  Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: gsu:GSU0474 sensory box/GGDEF family protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein.


ensembl_gene_id: Amir_6874
symbol: Amir_6874
gene_biotype: protein_coding
description:
  Lysozyme; KEGG: N,O-diacetylmuramidase; PFAM: glycoside hydrolase family 25; SMART: glycoside hydrolase family 25.


ensembl_gene_id: Amir_6875
symbol: Amir_6875
gene_biotype: protein_coding
description:
  Lysozyme; KEGG: N,O-diacetyl muramidase; K01238; PFAM: glycoside hydrolase family 25; SMART: glycoside hydrolase family 25.


ensembl_gene_id: Amir_6876
symbol: purL
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase II; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist  [...]


ensembl_gene_id: Amir_6877
symbol: purQ
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase I; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist i [...]


ensembl_gene_id: Amir_6878
symbol: purS
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase, purS; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assi [...]


ensembl_gene_id: Amir_6880
symbol: Amir_6880
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: bja:blr6721 putative reductase.


ensembl_gene_id: Amir_6883
symbol: purC
gene_biotype: protein_coding
description:
  KEGG: aba:Acid345_2258 phosphoribosylaminoimidazole- succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole- succinocarboxamide synthase; PFAM: SAICAR synthetase.


ensembl_gene_id: Amir_6884
symbol: Amir_6884
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: rde:RD1_2182 amino acid ABC transporter, periplasmic-binding protein, putative.


ensembl_gene_id: Amir_6885
symbol: Amir_6885
gene_biotype: protein_coding
description:
  TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rde:RD1_2183 glutamine ABC transporter, permease protein, putative.


ensembl_gene_id: Amir_6888
symbol: Amir_6888
gene_biotype: protein_coding
description:
  TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: hypothetical protein; K01756 adenylosuccinate lyase.


ensembl_gene_id: Amir_6890
symbol: Amir_6890
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: sus:Acid_7940 ECF subfamily RNA polymerase sigma-24 factor.


ensembl_gene_id: Amir_6894
symbol: Amir_6894
gene_biotype: protein_coding
description:
  PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mxa:MXAN_1432 L-allo-threonine aldolase.


ensembl_gene_id: Amir_6895
symbol: Amir_6895
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: aba:Acid345_0142 HAD-superfamily hydrolase subfamily IA, variant 3.


ensembl_gene_id: Amir_6903
symbol: purD
gene_biotype: protein_coding
description:
  KEGG: ccs:CCNA_00299 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase; Belongs to the GARS family.


ensembl_gene_id: Amir_6905
symbol: Amir_6905
gene_biotype: protein_coding
description:
  TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; Citrate transporter; KEGG: bpt:Bpet4158 hypothetical protein.


ensembl_gene_id: Amir_6906
symbol: Amir_6906
gene_biotype: protein_coding
description:
  PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: rce:RC1_0289 glycerophosphoryl diester phosphodiesterase.


ensembl_gene_id: Amir_6908
symbol: purA-2
gene_biotype: protein_coding
description:
  Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.


ensembl_gene_id: Amir_6917
symbol: Amir_6917
gene_biotype: protein_coding
description:
  Fructose-bisphosphate aldolase, class II; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family.


ensembl_gene_id: Amir_6920
symbol: Amir_6920
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bch:Bcen2424_6846 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Amir_6922
symbol: Amir_6922
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: mxa:MXAN_2500 RNA polymerase sigma-70 factor, ECF subfamily.


ensembl_gene_id: Amir_6924
symbol: Amir_6924
gene_biotype: protein_coding
description:
  KEGG: smt:Smal_3421 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase.


ensembl_gene_id: Amir_6930
symbol: Amir_6930
gene_biotype: protein_coding
description:
  PFAM: PfkB domain protein; KEGG: sfu:Sfum_3386 PfkB domain protein; Belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: Amir_6931
symbol: Amir_6931
gene_biotype: protein_coding
description:
  PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: acr:Acry_0501 periplasmic binding protein/LacI transcriptional regulator.


ensembl_gene_id: Amir_6933
symbol: Amir_6933
gene_biotype: protein_coding
description:
  PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: azo:azo1893 RNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: Amir_6936
symbol: pyrE
gene_biotype: protein_coding
description:
  Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).


ensembl_gene_id: Amir_6941
symbol: Amir_6941
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Male sterility domain; NAD-dependent epimerase/dehydratase; KEGG: azc:AZC_1379 short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Amir_6943
symbol: clpB
gene_biotype: protein_coding
description:
  ATP-dependent chaperone ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.


ensembl_gene_id: Amir_6945
symbol: Amir_6945
gene_biotype: protein_coding
description:
  PFAM: Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; globin; KEGG: afr:AFE_0860 iron-sulfur cluster-binding protein/oxidoreductase, FAD/NAD-binding; Belongs to the globin family.


ensembl_gene_id: Amir_6946
symbol: Amir_6946
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: cjj:CJJ81176_1244 MerR family transcriptional regulator.


ensembl_gene_id: Amir_6947
symbol: dnaJ-2
gene_biotype: protein_coding
description:
  Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]


ensembl_gene_id: Amir_6948
symbol: grpE
gene_biotype: protein_coding
description:
  GrpE protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent i [...]


ensembl_gene_id: Amir_6953
symbol: Amir_6953
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ade:Adeh_0008 hypothetical protein.


ensembl_gene_id: Amir_6958
symbol: Amir_6958
gene_biotype: protein_coding
description:
  TIGRFAM: LPXTG-motif cell wall anchor domain protein; KEGG: dsh:Dshi_3592 Cna B domain-containing protein.


ensembl_gene_id: Amir_6959
symbol: dcd
gene_biotype: protein_coding
description:
  Deoxycytidine triphosphate deaminase; Bifunctional enzyme that catalyzes both the deamination of dCTP to dUTP and the hydrolysis of dUTP to dUMP without releasing the toxic dUTP intermediate.


ensembl_gene_id: Amir_6961
symbol: Amir_6961
gene_biotype: protein_coding
description:
  PFAM: Na+/solute symporter; KEGG: vsp:VS_1257 putative sodium/glucose cotransporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: Amir_6962
symbol: Amir_6962
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; SMART: regulatory protein LuxR; KEGG: xcv:XCV2187 two-component system LuxR family regulatory protein.


ensembl_gene_id: Amir_6966
symbol: Amir_6966
gene_biotype: protein_coding
description:
  Chaperonin Cpn10; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter; Belongs to the GroES chaperonin family.


ensembl_gene_id: Amir_6967
symbol: Amir_6967
gene_biotype: protein_coding
description:
  PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; NHL repeat containing protein; Redoxin domain protein; KEGG: haloacid dehalogenase-like hydrolase family protein.


ensembl_gene_id: Amir_6972
symbol: Amir_6972
gene_biotype: protein_coding
description:
  TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: pmy:Pmen_0745 acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Amir_6973
symbol: Amir_6973
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rpi:Rpic_0416 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Amir_6977
symbol: Amir_6977
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: afw:Anae109_2163 acyl-CoA dehydrogenase domain-containing protein.


ensembl_gene_id: Amir_6980
symbol: Amir_6980
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: sal:Sala_2443 MerR family transcriptional regulator.


ensembl_gene_id: Amir_6981
symbol: Amir_6981
gene_biotype: protein_coding
description:
  PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain- containing protein; E3 binding domain protein; KEGG: bha:BH2653 branched-chain alpha-keto acid dehydrogenase subunit E2.


ensembl_gene_id: Amir_6982
symbol: Amir_6982
gene_biotype: protein_coding
description:
  PFAM: Transketolase central region; Transketolase domain protein; KEGG: afw:Anae109_1994 transketolase central region.


ensembl_gene_id: Amir_6983
symbol: Amir_6983
gene_biotype: protein_coding
description:
  KEGG: gme:Gmet_2509 dehydrogenase, E1 component; TIGRFAM: pyruvate dehydrogenase (acetyl- transferring) E1 component, alpha subunit; PFAM: dehydrogenase E1 component.


ensembl_gene_id: Amir_6984
symbol: Amir_6984
gene_biotype: protein_coding
description:
  PFAM: peptidase M20; peptidase dimerization domain protein; KEGG: xca:xccb100_1378 hypothetical protein.


ensembl_gene_id: Amir_6986
symbol: Amir_6986
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: acr:Acry_0683 extracellular solute-binding protein.


ensembl_gene_id: Amir_6987
symbol: Amir_6987
gene_biotype: protein_coding
description:
  TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: acr:Acry_0684 polar amino acid ABC transporter, inner membrane subunit.


ensembl_gene_id: Amir_6994
symbol: pckG
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate carboxykinase (GTP); Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle; Belongs to the phosphoenolpyruvate carboxykinase [GTP] family.


ensembl_gene_id: Amir_6997
symbol: Amir_6997
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; KEGG: reu:Reut_A2447 GntR family transcriptional regulator.


ensembl_gene_id: Amir_7005
symbol: Amir_7005
gene_biotype: protein_coding
description:
  Hypothetical protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dep [...]


ensembl_gene_id: Amir_7011
symbol: Amir_7011
gene_biotype: protein_coding
description:
  Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: eum:ECUMN_4825 regulator of macrolide 2'- phosphotransferase I.


ensembl_gene_id: Amir_7012
symbol: Amir_7012
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; KEGG: mno:Mnod_7133 Cof-like hydrolase.


ensembl_gene_id: Amir_7016
symbol: trmB
gene_biotype: protein_coding
description:
  tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.


ensembl_gene_id: Amir_7022
symbol: Amir_7022
gene_biotype: protein_coding
description:
  PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: bja:blr4240 hypothetical protein.


ensembl_gene_id: Amir_7024
symbol: Amir_7024
gene_biotype: protein_coding
description:
  PFAM: amidohydrolase; adenosine/AMP deaminase; Amidohydrolase 3; KEGG: tmz:Tmz1t_1721 amidohydrolase.


ensembl_gene_id: Amir_7025
symbol: Amir_7025
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rce:RC1_3985 oxidoreductase, short chain dehydrogenase.


ensembl_gene_id: Amir_7026
symbol: Amir_7026
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF839; KEGG: mes:Meso_0954 twin-arginine translocation pathway signal.


ensembl_gene_id: Amir_7029
symbol: Amir_7029
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: vei:Veis_2048 HAD-superfamily hydrolase, subfamily IA, variant 3.


ensembl_gene_id: Amir_7030
symbol: Amir_7030
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pna:Pnap_2712 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Amir_7031
symbol: Amir_7031
gene_biotype: protein_coding
description:
  TIGRFAM: inositol 1-phosphate synthase; PFAM: Myo-inositol-1-phosphate synthase; Myo- inositol-1-phosphate synthase GAPDH domain protein; KEGG: sme:SM_b20249 putative myo-inositol-1- phosphate synthase.


ensembl_gene_id: Amir_7032
symbol: Amir_7032
gene_biotype: protein_coding
description:
  PFAM: transcriptional regulator PadR family protein; KEGG: dal:Dalk_2104 transcriptional regulator, PadR- like family.


ensembl_gene_id: Amir_7034
symbol: Amir_7034
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: bsu:BSU37510 hypothetical protein.


ensembl_gene_id: Amir_7037
symbol: Amir_7037
gene_biotype: protein_coding
description:
  Apurinic endonuclease Apn1; KEGG: pca:Pcar_3071 endonuclease IV; TIGRFAM: apurinic endonuclease Apn1; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease family 2.


ensembl_gene_id: Amir_7038
symbol: Amir_7038
gene_biotype: protein_coding
description:
  KEGG: Taf4a; TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor; K03129 transcription initiation factor TFIID subunit D3.


ensembl_gene_id: Amir_7040
symbol: Amir_7040
gene_biotype: protein_coding
description:
  TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: bsu:BSU40900 single-strand DNA-binding protein.


ensembl_gene_id: Amir_7043
symbol: Amir_7043
gene_biotype: protein_coding
description:
  Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.


ensembl_gene_id: Amir_7044
symbol: Amir_7044
gene_biotype: protein_coding
description:
  Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rru:Rru_A2907 anti-sigma-factor antagonist domain-containing protein.


ensembl_gene_id: Amir_7045
symbol: Amir_7045
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: nar:Saro_2963 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Amir_7047
symbol: Amir_7047
gene_biotype: protein_coding
description:
  PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: rme:Rmet_3922 DNA polymerase III, epsilon subunit.


ensembl_gene_id: Amir_7048
symbol: Amir_7048
gene_biotype: protein_coding
description:
  Diguanylate cyclase; KEGG: pen:PSEEN1648 sensory box/GGDEF domain/EAL domain protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein.


ensembl_gene_id: Amir_7053
symbol: Amir_7053
gene_biotype: protein_coding
description:
  Diguanylate cyclase; KEGG: pca:Pcar_1107 two component signal transduction response regulator; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein.


ensembl_gene_id: Amir_7054
symbol: Amir_7054
gene_biotype: protein_coding
description:
  Putative signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: bpl:BURPS1106A_1352 putative membrane sensor histidine kinase.


ensembl_gene_id: Amir_7055
symbol: Amir_7055
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; Bacterio-opsin activator HTH domain protein; SMART: response regulator receiver; regulatory protein LuxR; KEGG: reh:H16_B2334 response regulator, NarL-family.


ensembl_gene_id: Amir_7062
symbol: Amir_7062
gene_biotype: protein_coding
description:
  PFAM: NmrA family protein; NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; dTDP-4- dehydrorhamnose reductase; KEGG: dvl:Dvul_2879 NAD-dependent epimerase/dehydratase.


ensembl_gene_id: Amir_7063
symbol: tdh
gene_biotype: protein_coding
description:
  Alcohol dehydrogenase GroES domain protein; Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2- amino-3-ketobutyrate; Belongs to the zinc-containing alcohol dehydrogenase family.


ensembl_gene_id: Amir_7064
symbol: kbl
gene_biotype: protein_coding
description:
  2-amino-3-ketobutyrate coenzyme A ligase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA.


ensembl_gene_id: Amir_7069
symbol: Amir_7069
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate-protein phosphotransferase; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).


ensembl_gene_id: Amir_7070
symbol: rbsK
gene_biotype: protein_coding
description:
  PfkB domain protein; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.


ensembl_gene_id: Amir_7074
symbol: leuS
gene_biotype: protein_coding
description:
  TIGRFAM: leucyl-tRNA synthetase; KEGG: rle:RL2798 putative leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: Amir_7076
symbol: Amir_7076
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF179; KEGG: aeh:Mlg_0349 hypothetical protein; Belongs to the UPF0301 (AlgH) family.


