# geneInfo

ensembl_gene_id: Caci_0001
symbol: dnaA
gene_biotype: protein_coding
description:
  Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.


ensembl_gene_id: Caci_0002
symbol: Caci_0002
gene_biotype: protein_coding
description:
  DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]


ensembl_gene_id: Caci_0003
symbol: Caci_0003
gene_biotype: protein_coding
description:
  TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 6-phosphogluconate dehydrogenase domain protein; KEGG: sco:SCO3877 6-phosphogluconate dehydrogenase- like protein.


ensembl_gene_id: Caci_0004
symbol: recF
gene_biotype: protein_coding
description:
  DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.


ensembl_gene_id: Caci_0006
symbol: gyrB
gene_biotype: protein_coding
description:
  DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: Caci_0007
symbol: gyrA
gene_biotype: protein_coding
description:
  DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: Caci_0010
symbol: Caci_0010
gene_biotype: protein_coding
description:
  PFAM: Curculin domain protein (mannose-binding) lectin; SMART: Curculin domain protein (mannose-binding) lectin; KEGG: pfl:PFL_2127 putidacin L1.


ensembl_gene_id: Caci_0011
symbol: Caci_0011
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: saq:Sare_0152 GntR family transcriptional regulator.


ensembl_gene_id: Caci_0014
symbol: Caci_0014
gene_biotype: protein_coding
description:
  Putative signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: tfu:Tfu_2295 hypothetical protein.


ensembl_gene_id: Caci_0015
symbol: Caci_0015
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.


ensembl_gene_id: Caci_0019
symbol: Caci_0019
gene_biotype: protein_coding
description:
  Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: tfu:Tfu_2295 hypothetical protein.


ensembl_gene_id: Caci_0020
symbol: Caci_0020
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: nfa:nfa38930 putative DNA-binding protein.


ensembl_gene_id: Caci_0021
symbol: Caci_0021
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: fal:FRAAL6347 putative regulatory protein.


ensembl_gene_id: Caci_0023
symbol: Caci_0023
gene_biotype: protein_coding
description:
  Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: stp:Strop_2766 regulatory protein, TetR.


ensembl_gene_id: Caci_0025
symbol: Caci_0025
gene_biotype: protein_coding
description:
  PFAM: NmrA family protein; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: kpn:KPN_04605 putative oxidoreductase.


ensembl_gene_id: Caci_0030
symbol: Caci_0030
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: fre:Franean1_0089 ECF subfamily RNA polymerase sigma-24 factor.


ensembl_gene_id: Caci_0032
symbol: Caci_0032
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rpc:RPC_2940 methyltransferase type 11.


ensembl_gene_id: Caci_0033
symbol: Caci_0033
gene_biotype: protein_coding
description:
  FHA domain containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: sco:SCO3843 hypothetical protein.


ensembl_gene_id: Caci_0034
symbol: Caci_0034
gene_biotype: protein_coding
description:
  FHA domain containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: sgr:SGR_3729 hypothetical protein.


ensembl_gene_id: Caci_0035
symbol: Caci_0035
gene_biotype: protein_coding
description:
  PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: sgr:SGR_3728 putative protein phosphatase.


ensembl_gene_id: Caci_0036
symbol: Caci_0036
gene_biotype: protein_coding
description:
  PFAM: cell cycle protein; KEGG: sgr:SGR_3727 FtsW/RodA/SpoVE family cell cycle protein; Belongs to the SEDS family.


ensembl_gene_id: Caci_0037
symbol: Caci_0037
gene_biotype: protein_coding
description:
  Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; KEGG: sma:SAV_4339 penicillin-binding protein.


ensembl_gene_id: Caci_0038
symbol: Caci_0038
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sgr:SGR_3725 putative serine/threonine protein kinase.


ensembl_gene_id: Caci_0039
symbol: Caci_0039
gene_biotype: protein_coding
description:
  TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: sgr:SGR_3722 putative glutamine amidotransferase.


ensembl_gene_id: Caci_0041
symbol: Caci_0041
gene_biotype: protein_coding
description:
  TIGRFAM: sortase family protein; PFAM: peptidase C60 sortase A and B; KEGG: kra:Krad_0027 sortase family protein.


ensembl_gene_id: Caci_0045
symbol: Caci_0045
gene_biotype: protein_coding
description:
  Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.


ensembl_gene_id: Caci_0054
symbol: Caci_0054
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase, subfamily IB (PSPase- like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sma:SAV_4604 morphological differentiation- associated protein.


ensembl_gene_id: Caci_0055
symbol: Caci_0055
gene_biotype: protein_coding
description:
  PFAM: TrkA-N domain protein; Ion transport 2 domain protein; KEGG: sma:SAV_4367 hypothetical protein.


ensembl_gene_id: Caci_0056
symbol: Caci_0056
gene_biotype: protein_coding
description:
  MoeA domain protein domain I and II; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.


ensembl_gene_id: Caci_0061
symbol: Caci_0061
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: sgr:SGR_3736 putative acyl-CoA dehydrogenase.


ensembl_gene_id: Caci_0064
symbol: Caci_0064
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sma:SAV_7535 hydrolase.


ensembl_gene_id: Caci_0065
symbol: Caci_0065
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; PFAM: TipAS antibiotic-recognition domain protein; regulatory protein MerR; SMART: regulatory protein MerR; KEGG: sgr:SGR_941 MerR family transcriptional regulator.


ensembl_gene_id: Caci_0066
symbol: nhaA
gene_biotype: protein_coding
description:
  Na+/H+ antiporter NhaA; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.


ensembl_gene_id: Caci_0067
symbol: acsA
gene_biotype: protein_coding
description:
  acetate/CoA ligase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.


ensembl_gene_id: Caci_0068
symbol: Caci_0068
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: stp:Strop_4494 LytTr DNA-binding region.


ensembl_gene_id: Caci_0069
symbol: Caci_0069
gene_biotype: protein_coding
description:
  Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: nca:Noca_0358 histidine kinase internal region.


ensembl_gene_id: Caci_0074
symbol: Caci_0074
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ank:AnaeK_2958 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Caci_0075
symbol: Caci_0075
gene_biotype: protein_coding
description:
  Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: fal:FRAAL3321 2,4-DAPG biosynthesis transcriptional repressor PhlF.


ensembl_gene_id: Caci_0076
symbol: Caci_0076
gene_biotype: protein_coding
description:
  TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sco:SCO3823 quinone oxidoreductase.


ensembl_gene_id: Caci_0082
symbol: grpE
gene_biotype: protein_coding
description:
  GrpE protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent i [...]


ensembl_gene_id: Caci_0083
symbol: dnaJ
gene_biotype: protein_coding
description:
  Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]


ensembl_gene_id: Caci_0084
symbol: Caci_0084
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: sma:SAV_4487 HspR protein.


ensembl_gene_id: Caci_0085
symbol: clpB
gene_biotype: protein_coding
description:
  ATP-dependent chaperone ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.


ensembl_gene_id: Caci_0088
symbol: Caci_0088
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: tfu:Tfu_1700 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Caci_0089
symbol: Caci_0089
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; protein of unknown function RIO1; aminoglycoside phosphotransferase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: fre:Franean1_5221 serine/threonine protein kinase.


ensembl_gene_id: Caci_0090
symbol: Caci_0090
gene_biotype: protein_coding
description:
  PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sma:SAV_4383 hydrolase.


ensembl_gene_id: Caci_0091
symbol: Caci_0091
gene_biotype: protein_coding
description:
  PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain- containing protein; E3 binding domain protein; KEGG: sco:SCO3815 branched-chain alpha-keto acid dehydrogenase subunit E2.


ensembl_gene_id: Caci_0092
symbol: Caci_0092
gene_biotype: protein_coding
description:
  PFAM: Transketolase central region; Transketolase domain protein; KEGG: sco:SCO3816 branched-chain alpha keto acid dehydrogenase E1 beta subunit.


ensembl_gene_id: Caci_0093
symbol: Caci_0093
gene_biotype: protein_coding
description:
  KEGG: sgr:SGR_3765 putative branched-chain alpha keto acid dehydrogenase E1 alpha subunit; TIGRFAM: pyruvate dehydrogenase (acetyl- transferring) E1 component, alpha subunit; PFAM: dehydrogenase E1 component.


ensembl_gene_id: Caci_0094
symbol: Caci_0094
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: ace:Acel_0518 two component LuxR family transcriptional regulator.


ensembl_gene_id: Caci_0095
symbol: Caci_0095
gene_biotype: protein_coding
description:
  Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: sco:SCO1339 hypothetical protein.


ensembl_gene_id: Caci_0097
symbol: Caci_0097
gene_biotype: protein_coding
description:
  PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; KEGG: ace:Acel_2105 prephenate dehydratase.


ensembl_gene_id: Caci_0099
symbol: pxpA
gene_biotype: protein_coding
description:
  LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.


ensembl_gene_id: Caci_0100
symbol: Caci_0100
gene_biotype: protein_coding
description:
  PFAM: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; KEGG: aau:AAur_0053 UreA carboxylase/allophanate hydrolase domain-containing protein.


ensembl_gene_id: Caci_0103
symbol: Caci_0103
gene_biotype: protein_coding
description:
  FHA domain containing protein; PFAM: Forkhead-associated protein; protein of unknown function DUF1707; SMART: Forkhead-associated protein; KEGG: sma:SAV_2158 hypothetical protein.


ensembl_gene_id: Caci_0104
symbol: Caci_0104
gene_biotype: protein_coding
description:
  PFAM: proteinase inhibitor I4 serpin; SMART: proteinase inhibitor I4 serpin; KEGG: scl:sce4096 secreted serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member; Belongs to the serpin family.


ensembl_gene_id: Caci_0109
symbol: Caci_0109
gene_biotype: protein_coding
description:
  Putative PAS/PAC sensor protein; KEGG: tfu:Tfu_0250 PAS containing protein phosphatase 2C-like; TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; PAS fold domain protein; GAF domain protein; PAS fold-4 domain protein; SMART: protein phosphatase 2C domain protein; GAF domain protein; PAS domain containing protein.


ensembl_gene_id: Caci_0110
symbol: Caci_0110
gene_biotype: protein_coding
description:
  TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: sco:SCO3183 hypothetical protein.


ensembl_gene_id: Caci_0111
symbol: Caci_0111
gene_biotype: protein_coding
description:
  KEGG: ace:Acel_0165 diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein.


ensembl_gene_id: Caci_0112
symbol: Caci_0112
gene_biotype: protein_coding
description:
  TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: sma:SAV_3673 UTP:glucose-1-phosphate uridylyltransferase.


ensembl_gene_id: Caci_0113
symbol: Caci_0113
gene_biotype: protein_coding
description:
  Molybdenum cofactor synthesis domain protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.


ensembl_gene_id: Caci_0114
symbol: moaC
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein C; Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC family.


ensembl_gene_id: Caci_0115
symbol: Caci_0115
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro10371 major facilitator superfamily multidrug resistance protein.


ensembl_gene_id: Caci_0116
symbol: Caci_0116
gene_biotype: protein_coding
description:
  PFAM: Rieske [2Fe-2S] domain protein; KEGG: mxa:MXAN_3480 iron-sulfur cluster-binding protein, Rieske family.


ensembl_gene_id: Caci_0118
symbol: Caci_0118
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sco:SCO3133 MarR family regulatory protein.


ensembl_gene_id: Caci_0119
symbol: Caci_0119
gene_biotype: protein_coding
description:
  Trans-aconitate 2-methyltransferase; Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate.


ensembl_gene_id: Caci_0120
symbol: Caci_0120
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: stp:Strop_4178 hypothetical protein.


ensembl_gene_id: Caci_0122
symbol: Caci_0122
gene_biotype: protein_coding
description:
  PFAM: MgtE intracellular region; CBS domain containing protein; KEGG: ace:Acel_1818 MgtE intracellular region.


ensembl_gene_id: Caci_0126
symbol: Caci_0126
gene_biotype: protein_coding
description:
  PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: aau:AAur_0159 type I phosphodiesterase / nucleotide pyrophosphatase family protein.


ensembl_gene_id: Caci_0127
symbol: Caci_0127
gene_biotype: protein_coding
description:
  PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sma:SAV_2089 2-hydroxyacid dehydrogenase.


ensembl_gene_id: Caci_0128
symbol: Caci_0128
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aau:AAur_1453 putative transmembrane lipoprotein LplB.


ensembl_gene_id: Caci_0129
symbol: Caci_0129
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aau:AAur_1454 putative transmembrane lipoprotein LplC.


ensembl_gene_id: Caci_0130
symbol: Caci_0130
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: aau:AAur_1455 putative lipoprotein precursor LplA.


ensembl_gene_id: Caci_0134
symbol: Caci_0134
gene_biotype: protein_coding
description:
  KEGG: rsa:RSal33209_0109 LacI family transcription regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI.


ensembl_gene_id: Caci_0135
symbol: Caci_0135
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: sco:SCO6193 transcriptional regulator.


ensembl_gene_id: Caci_0140
symbol: Caci_0140
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: sgr:SGR_4813 putative oxidoreductase.


ensembl_gene_id: Caci_0141
symbol: Caci_0141
gene_biotype: protein_coding
description:
  PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: tfu:Tfu_1710 LacI family transcription regulator.


ensembl_gene_id: Caci_0142
symbol: Caci_0142
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF6 transmembrane; KEGG: sgr:SGR_4335 putative integral membrane protein.


ensembl_gene_id: Caci_0143
symbol: Caci_0143
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: sco:SCO5749 two-component regulator.


ensembl_gene_id: Caci_0144
symbol: Caci_0144
gene_biotype: protein_coding
description:
  GAF sensor hybrid histidine kinase; KEGG: sgr:SGR_1773 putative two-component system sensor kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; GAF domain protein; histidine kinase HAMP region domain protein.


ensembl_gene_id: Caci_0145
symbol: Caci_0145
gene_biotype: protein_coding
description:
  PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sgr:SGR_1774 hypothetical protein.


ensembl_gene_id: Caci_0147
symbol: Caci_0147
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: sen:SACE_7161 RNA polymerase ECF sigma factor.


ensembl_gene_id: Caci_0148
symbol: Caci_0148
gene_biotype: protein_coding
description:
  PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: nca:Noca_4538 cyclopropane-fatty-acyl- phospholipid synthase.


ensembl_gene_id: Caci_0152
symbol: Caci_0152
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: fal:FRAAL6227 putative NADH dehydrogenase.


ensembl_gene_id: Caci_0156
symbol: Caci_0156
gene_biotype: protein_coding
description:
  PFAM: multicopper oxidase type 2; multicopper oxidase type 3; multicopper oxidase type 1; KEGG: sen:SACE_1822 spore coat protein (outer).


ensembl_gene_id: Caci_0157
symbol: Caci_0157
gene_biotype: protein_coding
description:
  Putative phytochrome sensor protein; PFAM: GAF domain protein; histidine kinase dimerisation and phosphoacceptor region; SMART: GAF domain protein; KEGG: sma:SAV_4257 two-component system sensor kinase.


ensembl_gene_id: Caci_0158
symbol: pat
gene_biotype: protein_coding
description:
  Histidinol-phosphate aminotransferase; May catalyze the transamination reaction in phenylalanine biosynthesis; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Caci_0160
symbol: Caci_0160
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bmj:BMULJ_02621 AraC subfamily transcriptional regulator.


ensembl_gene_id: Caci_0162
symbol: Caci_0162
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sen:SACE_3371 3-oxoacyl-[acyl-carrier- protein] reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Caci_0164
symbol: Caci_0164
gene_biotype: protein_coding
description:
  PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: mgi:Mflv_4614 carbamoyl-phosphate synthase L chain, ATP-binding.


ensembl_gene_id: Caci_0167
symbol: Caci_0167
gene_biotype: protein_coding
description:
  Stearoyl-CoA 9-desaturase; PFAM: fatty acid desaturase; KEGG: sgr:SGR_4378 putative fatty acid desaturase.


ensembl_gene_id: Caci_0168
symbol: glmU
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine pyrophosphorylase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain.


ensembl_gene_id: Caci_0169
symbol: prs
gene_biotype: protein_coding
description:
  Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.


ensembl_gene_id: Caci_0170
symbol: rplY
gene_biotype: protein_coding
description:
  Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.


ensembl_gene_id: Caci_0171
symbol: pth
gene_biotype: protein_coding
description:
  peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.


ensembl_gene_id: Caci_0172
symbol: Caci_0172
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO5452 ABC transporter, ATP-binding subunit.


ensembl_gene_id: Caci_0174
symbol: Caci_0174
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; SMART: ATP-binding region ATPase domain protein; KEGG: sco:SCO5454 two-component system sensor kinase.


ensembl_gene_id: Caci_0175
symbol: Caci_0175
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sco:SCO5455 two-component system response regulator.


ensembl_gene_id: Caci_0178
symbol: ppc
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family.


ensembl_gene_id: Caci_0179
symbol: Caci_0179
gene_biotype: protein_coding
description:
  TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: sgr:SGR_6861 putative signal peptidase I; Belongs to the peptidase S26 family.


ensembl_gene_id: Caci_0180
symbol: Caci_0180
gene_biotype: protein_coding
description:
  KEGG: sma:SAV_1715 non-hemolytic phospholipase C; TIGRFAM: phospholipase C, phosphocholine-specific; PFAM: phosphoesterase; protein of unknown function DUF756.


ensembl_gene_id: Caci_0186
symbol: Caci_0186
gene_biotype: protein_coding
description:
  Alkylhydroperoxidase like protein, AhpD family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.


ensembl_gene_id: Caci_0188
symbol: mfd
gene_biotype: protein_coding
description:
  Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.


ensembl_gene_id: Caci_0194
symbol: Caci_0194
gene_biotype: protein_coding
description:
  TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: sgr:SGR_4434 MazG family transcriptional regulator.


ensembl_gene_id: Caci_0195
symbol: tatA
gene_biotype: protein_coding
description:
  Twin-arginine translocation protein, TatA/E family subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.


ensembl_gene_id: Caci_0198
symbol: Caci_0198
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver; KEGG: sma:SAV_4878 two-component system response regulator.


ensembl_gene_id: Caci_0199
symbol: Caci_0199
gene_biotype: protein_coding
description:
  PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: sma:SAV_4879 two-component system sensor kinase.


ensembl_gene_id: Caci_0201
symbol: eno
gene_biotype: protein_coding
description:
  Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.


ensembl_gene_id: Caci_0204
symbol: Caci_0204
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; SMART: ATP-binding region ATPase domain protein; KEGG: fal:FRAAL5519 two-component system sensor kinase.


ensembl_gene_id: Caci_0207
symbol: Caci_0207
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sen:SACE_5293 putative two-component system sensor kinase.


ensembl_gene_id: Caci_0208
symbol: Caci_0208
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: fre:Franean1_5311 two component transcriptional regulator.


ensembl_gene_id: Caci_0211
symbol: macB
gene_biotype: protein_coding
description:
  ABC transporter related; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.


ensembl_gene_id: Caci_0212
symbol: Caci_0212
gene_biotype: protein_coding
description:
  PFAM: secretion protein HlyD family protein; KEGG: ace:Acel_1450 RND family efflux transporter MFP subunit.


ensembl_gene_id: Caci_0214
symbol: Caci_0214
gene_biotype: protein_coding
description:
  PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: mab:MAB_2246 thiol-specific antioxidant related protein/peroxidoxin BcpB.


ensembl_gene_id: Caci_0218
symbol: Caci_0218
gene_biotype: protein_coding
description:
  PFAM: PKD domain containing protein; SMART: PKD domain containing protein; KEGG: ace:Acel_1679 protease-like.


ensembl_gene_id: Caci_0225
symbol: Caci_0225
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; NB-ARC domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: helix-turn-helix domain protein; Tetratricopeptide domain protein; KEGG: sen:SACE_0488 SARP family transcriptional regulator.


ensembl_gene_id: Caci_0228
symbol: Caci_0228
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; Tetratricopeptide domain protein; KEGG: sen:SACE_0488 SARP family transcriptional regulator.


ensembl_gene_id: Caci_0231
symbol: Caci_0231
gene_biotype: protein_coding
description:
  Clavaminate synthase; Alpha-ketoglutarate-dependent dioxygenase that in vitro catalyzes the regio- and stereoselective hydroxylation of L-lysine, leading to (3S)-3-hydroxy-L-lysine. Can also use (5R)-5-hydroxy-L- lysine as substrate, but neither D-lysine nor L-ornithine. Belongs to the clavaminate synthase family.


ensembl_gene_id: Caci_0236
symbol: Caci_0236
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF74; KEGG: mmi:MMAR_5292 hypothetical protein; Belongs to the UPF0145 family.


ensembl_gene_id: Caci_0237
symbol: Caci_0237
gene_biotype: protein_coding
description:
  PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sma:SAV_4224 glycerophosphoryl diester phosphodiesterase.


ensembl_gene_id: Caci_0238
symbol: Caci_0238
gene_biotype: protein_coding
description:
  Putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: sco:SCO3975 regulator.


ensembl_gene_id: Caci_0239
symbol: Caci_0239
gene_biotype: protein_coding
description:
  PFAM: glutamine amidotransferase class-I; Chorismate binding-like; KEGG: stp:Strop_2960 glutamine amidotransferase class-I.


ensembl_gene_id: Caci_0244
symbol: Caci_0244
gene_biotype: protein_coding
description:
  PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: sma:SAV_4348 hypothetical protein.


ensembl_gene_id: Caci_0245
symbol: serS
gene_biotype: protein_coding
description:
  seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).


ensembl_gene_id: Caci_0247
symbol: Caci_0247
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: sgr:SGR_2995 RNA polymerase ECF-subfamily sigma factor.


ensembl_gene_id: Caci_0248
symbol: Caci_0248
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_1492 major facilitator superfamily permease.


ensembl_gene_id: Caci_0250
symbol: hutI
gene_biotype: protein_coding
description:
  KEGG: saq:Sare_0997 imidazolonepropionase; TIGRFAM: imidazolonepropionase; PFAM: amidohydrolase; Amidohydrolase 3.


ensembl_gene_id: Caci_0251
symbol: Caci_0251
gene_biotype: protein_coding
description:
  TIGRFAM: formiminoglutamate deiminase; PFAM: amidohydrolase; KEGG: sma:SAV_3494 N-formimino-L-glutamate deiminase.


ensembl_gene_id: Caci_0252
symbol: Caci_0252
gene_biotype: protein_coding
description:
  KEGG: sgr:SGR_4463 M20/M25/M40 family peptidase; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20.


ensembl_gene_id: Caci_0254
symbol: hutH
gene_biotype: protein_coding
description:
  KEGG: sma:SAV_3325 histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase.


ensembl_gene_id: Caci_0258
symbol: Caci_0258
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; KEGG: stp:Strop_2409 major facilitator transporter.


ensembl_gene_id: Caci_0259
symbol: Caci_0259
gene_biotype: protein_coding
description:
  Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: bcz:BCZK1497 transcriptional regulator.


ensembl_gene_id: Caci_0260
symbol: Caci_0260
gene_biotype: protein_coding
description:
  Transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: sco:SCO0724 transcriptional regulator.


ensembl_gene_id: Caci_0261
symbol: Caci_0261
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: sgr:SGR_3436 putative iron-sulphur-binding reductase.


ensembl_gene_id: Caci_0271
symbol: purA
gene_biotype: protein_coding
description:
  Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.


ensembl_gene_id: Caci_0272
symbol: Caci_0272
gene_biotype: protein_coding
description:
  PFAM: aminotransferase class-III; KEGG: sgr:SGR_3382 putative aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Caci_0278
symbol: Caci_0278
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bmj:BMULJ_04209 MarR family transcriptional regulator.


ensembl_gene_id: Caci_0279
symbol: purD
gene_biotype: protein_coding
description:
  KEGG: sma:SAV_4149 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; Belongs to the GARS family.


ensembl_gene_id: Caci_0281
symbol: Caci_0281
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: sen:SACE_1454 RNA polymerase ECF sigma factor.


ensembl_gene_id: Caci_0283
symbol: Caci_0283
gene_biotype: protein_coding
description:
  TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: tfu:Tfu_3014 adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.


ensembl_gene_id: Caci_0286
symbol: Caci_0286
gene_biotype: protein_coding
description:
  KEGG: sco:SCO4405 ABC transport system ATP-binding protein; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Caci_0288
symbol: purC
gene_biotype: protein_coding
description:
  KEGG: fra:Francci3_4373 phosphoribosylaminoimidazole-succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole- succinocarboxamide synthase; PFAM: SAICAR synthetase.


ensembl_gene_id: Caci_0289
symbol: purS
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase, purS; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assi [...]


ensembl_gene_id: Caci_0290
symbol: purQ
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase I; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist i [...]


ensembl_gene_id: Caci_0291
symbol: purL
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase II; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist  [...]


ensembl_gene_id: Caci_0296
symbol: purF
gene_biotype: protein_coding
description:
  Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.


ensembl_gene_id: Caci_0297
symbol: purM
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine cyclo-ligase; KEGG: sgr:SGR_3878 putative phosphoribosylaminoimidazole synthetase; TIGRFAM: phosphoribosylformylglycinamidine cyclo- ligase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein.


ensembl_gene_id: Caci_0299
symbol: Caci_0299
gene_biotype: protein_coding
description:
  PFAM: Glu/Leu/Phe/Val dehydrogenase dimerisation region; Glu/Leu/Phe/Val dehydrogenase; KEGG: saq:Sare_0168 Glu/Leu/Phe/Val dehydrogenase dimerisation region; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.


ensembl_gene_id: Caci_0301
symbol: Caci_0301
gene_biotype: protein_coding
description:
  TIGRFAM: DNA binding domain protein, excisionase family; PFAM: regulatory protein MerR; KEGG: sgr:SGR_3882 MerR family transcriptional regulator.


ensembl_gene_id: Caci_0302
symbol: Caci_0302
gene_biotype: protein_coding
description:
  Lysozyme; KEGG: fre:Franean1_6988 lysozyme; PFAM: cellulose-binding family II; SMART: cellulose-binding family II.


ensembl_gene_id: Caci_0303
symbol: Caci_0303
gene_biotype: protein_coding
description:
  PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: fre:Franean1_6579 cytochrome d ubiquinol oxidase subunit II.


ensembl_gene_id: Caci_0304
symbol: Caci_0304
gene_biotype: protein_coding
description:
  PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: fre:Franean1_6580 cytochrome bd ubiquinol oxidase subunit I.


ensembl_gene_id: Caci_0310
symbol: Caci_0310
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: tfu:Tfu_2825 LysR family transcriptional regulator.


ensembl_gene_id: Caci_0313
symbol: Caci_0313
gene_biotype: protein_coding
description:
  PFAM: Mov34/MPN/PAD-1 family protein; SMART: Mov34/MPN/PAD-1 family protein; KEGG: tfu:Tfu_2370 Mov34/MPN/PAD-1.


ensembl_gene_id: Caci_0314
symbol: Caci_0314
gene_biotype: protein_coding
description:
  Sugar transporter; KEGG: sgr:SGR_1900 putative glucose transporter; TIGRFAM: sugar transporter; PFAM: General substrate transporter; major facilitator superfamily MFS_1; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.


ensembl_gene_id: Caci_0316
symbol: Caci_0316
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sgr:SGR_5042 putative methyltransferase.


ensembl_gene_id: Caci_0323
symbol: Caci_0323
gene_biotype: protein_coding
description:
  TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_5254 major facilitator superfamily permease.


ensembl_gene_id: Caci_0324
symbol: Caci_0324
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bbt:BBta_4007 MarR family transcriptional regulator.


ensembl_gene_id: Caci_0327
symbol: Caci_0327
gene_biotype: protein_coding
description:
  PFAM: Helix-turn-helix type 11 domain protein; regulatory protein MerR; KEGG: fre:Franean1_1870 helix-turn-helix type 11 domain-containing protein.


ensembl_gene_id: Caci_0330
symbol: Caci_0330
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: fal:FRAAL3688 putative zinc-binding dehydrogenase.


ensembl_gene_id: Caci_0332
symbol: Caci_0332
gene_biotype: protein_coding
description:
  Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.


ensembl_gene_id: Caci_0335
symbol: rpsR
gene_biotype: protein_coding
description:
  Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.


ensembl_gene_id: Caci_0336
symbol: Caci_0336
gene_biotype: protein_coding
description:
  TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: sgr:SGR_3673 putative single-strand DNA- binding protein.


ensembl_gene_id: Caci_0339
symbol: Caci_0339
gene_biotype: protein_coding
description:
  Apurinic endonuclease Apn1; KEGG: nca:Noca_4666 endonuclease IV; TIGRFAM: apurinic endonuclease Apn1; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease family 2.


ensembl_gene_id: Caci_0345
symbol: Caci_0345
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: sma:SAV_4294 penicillin-binding protein.


ensembl_gene_id: Caci_0347
symbol: Caci_0347
gene_biotype: protein_coding
description:
  TIGRFAM: inositol 1-phosphate synthase; PFAM: Myo-inositol-1-phosphate synthase; Myo- inositol-1-phosphate synthase GAPDH domain protein; KEGG: sco:SCO3899 hypothetical protein.


ensembl_gene_id: Caci_0348
symbol: Caci_0348
gene_biotype: protein_coding
description:
  PFAM: putative cell wall binding repeat 2- containing protein; KEGG: ace:Acel_1461 cell wall binding repeat 2- containing protein.


ensembl_gene_id: Caci_0350
symbol: Caci_0350
gene_biotype: protein_coding
description:
  TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: fre:Franean1_1175 BadM/Rrf2 family transcriptional regulator.


ensembl_gene_id: Caci_0353
symbol: Caci_0353
gene_biotype: protein_coding
description:
  TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: fre:Franean1_3555 EmrB/QacA family drug resistance transporter.


ensembl_gene_id: Caci_0354
symbol: Caci_0354
gene_biotype: protein_coding
description:
  PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: sma:SAV_1846 transcription regulator AsnC.


ensembl_gene_id: Caci_0358
symbol: Caci_0358
gene_biotype: protein_coding
description:
  TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: sma:SAV_5952 hypothetical protein.


ensembl_gene_id: Caci_0359
symbol: Caci_0359
gene_biotype: protein_coding
description:
  PFAM: Oxidoreductase FAD-binding domain protein; globin; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: sgr:SGR_2266 putative flavohemoprotein; Belongs to the globin family.


ensembl_gene_id: Caci_0363
symbol: Caci_0363
gene_biotype: protein_coding
description:
  PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: sgr:SGR_935 putative sensor-like histidine kinase.


ensembl_gene_id: Caci_0368
symbol: fabH
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.


ensembl_gene_id: Caci_0370
symbol: Caci_0370
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: npu:Npun_R2083 AMP-dependent synthetase and ligase.


ensembl_gene_id: Caci_0373
symbol: Caci_0373
gene_biotype: protein_coding
description:
  PFAM: coagulation factor 5/8 type domain protein; Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; coagulation factor 5/8 type domain protein; KEGG: sco:SCO7015 secreted glycosyl hydrolase.


ensembl_gene_id: Caci_0375
symbol: Caci_0375
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mlo:mlr3236 oxidoreductase.


ensembl_gene_id: Caci_0376
symbol: Caci_0376
gene_biotype: protein_coding
description:
  PFAM: Limonene-12-epoxide hydrolase; KEGG: fal:FRAAL3597 delta-5-3-ketosteroid isomerase- like protein (fragment) (partial match).


ensembl_gene_id: Caci_0378
symbol: Caci_0378
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sco:SCO7709 MarR family transcriptional regulator.


ensembl_gene_id: Caci_0381
symbol: Caci_0381
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sma:SAV_1467 dehydrogenase.


ensembl_gene_id: Caci_0383
symbol: Caci_0383
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sma:SAV_7306 LysR family transcriptional regulator.


ensembl_gene_id: Caci_0384
symbol: Caci_0384
gene_biotype: protein_coding
description:
  TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; KEGG: sco:SCO0924 cytochrome b subunit.


ensembl_gene_id: Caci_0385
symbol: Caci_0385
gene_biotype: protein_coding
description:
  KEGG: sco:SCO0923 succinate dehydrogenase flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein.


ensembl_gene_id: Caci_0386
symbol: Caci_0386
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; ferredoxin; KEGG: sco:SCO0922 succinate dehydrogenase/fumarate reductase iron-sulfur subunit.


ensembl_gene_id: Caci_0392
symbol: Caci_0392
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding 8 domain protein; Ferric reductase domain protein transmembrane component domain; KEGG: fal:FRAAL0548 putative oxidoreductase.


ensembl_gene_id: Caci_0394
symbol: Caci_0394
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: saq:Sare_2937 RNA polymerase factor sigma-70; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Caci_0397
symbol: Caci_0397
gene_biotype: protein_coding
description:
  PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; Tetratricopeptide TPR_4; SMART: helix-turn-helix domain protein; Tetratricopeptide domain protein; KEGG: sma:SAV_4421 regulatory protein.


ensembl_gene_id: Caci_0402
symbol: Caci_0402
gene_biotype: protein_coding
description:
  TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV_7490 transmembrane efflux protein.


ensembl_gene_id: Caci_0404
symbol: Caci_0404
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: fal:FRAAL2466 putative short chain dehydrogenase.


ensembl_gene_id: Caci_0409
symbol: Caci_0409
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: art:Arth_0445 transcriptional regulator, XRE family.


ensembl_gene_id: Caci_0413
symbol: Caci_0413
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: amr:AM1_3890 oxidoreductase, short chain dehydrogenase/reductase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Caci_0414
symbol: Caci_0414
gene_biotype: protein_coding
description:
  Transcriptional regulator, TetR family; PFAM: Tetracyclin repressor domain protein; regulatory protein TetR; KEGG: sma:SAV_775 TetR family transcriptional regulator.


ensembl_gene_id: Caci_0415
symbol: Caci_0415
gene_biotype: protein_coding
description:
  PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; helicase domain protein; KEGG: sgr:SGR_1018 hypothetical protein.


ensembl_gene_id: Caci_0422
symbol: Caci_0422
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sma:SAV_2262 serine/threonine protein kinase.


ensembl_gene_id: Caci_0426
symbol: Caci_0426
gene_biotype: protein_coding
description:
  PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: rha:RHA1_ro03342 hypothetical protein.


ensembl_gene_id: Caci_0429
symbol: Caci_0429
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: sco:SCO3736 RNA polymerase ECF sigma factor.


ensembl_gene_id: Caci_0431
symbol: Caci_0431
gene_biotype: protein_coding
description:
  PFAM: Carbohydrate-binding family V/XII; 3D domain protein; SMART: Carbohydrate-binding family V/XII; KEGG: sgr:SGR_6088 putative chitinase.


ensembl_gene_id: Caci_0432
symbol: Caci_0432
gene_biotype: protein_coding
description:
  PFAM: cellulose-binding family II; Fibronectin type III domain protein; SMART: cellulose-binding family II; Fibronectin type III domain protein; KEGG: fre:Franean1_6988 lysozyme.


ensembl_gene_id: Caci_0447
symbol: Caci_0447
gene_biotype: protein_coding
description:
  Monosaccharide ABC transporter substrate-binding protein, CUT2 family; KEGG: stp:Strop_3846 hypothetical protein.


ensembl_gene_id: Caci_0448
symbol: pstB
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, ATPase subunit; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.


ensembl_gene_id: Caci_0449
symbol: Caci_0449
gene_biotype: protein_coding
description:
  TIGRFAM: sortase family protein; PFAM: peptidase C60 sortase A and B; KEGG: nca:Noca_0919 peptidase C60, sortase A and B.


ensembl_gene_id: Caci_0451
symbol: Caci_0451
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF916 cell surface putative; KEGG: saq:Sare_2622 hypothetical protein.


ensembl_gene_id: Caci_0453
symbol: Caci_0453
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: nca:Noca_0920 ABC-type phosphate transport system periplasmic component-like.


ensembl_gene_id: Caci_0456
symbol: Caci_0456
gene_biotype: protein_coding
description:
  TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nca:Noca_0916 phosphate ABC transporter, inner membrane subunit PstA.


ensembl_gene_id: Caci_0457
symbol: Caci_0457
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, inner membrane subunit PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: Caci_0460
symbol: Caci_0460
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 9; Fibronectin type III domain protein; type 3a cellulose-binding domain protein; SMART: Fibronectin type III domain protein; KEGG: tfu:Tfu_2176 endoglucanase.


ensembl_gene_id: Caci_0461
symbol: Caci_0461
gene_biotype: protein_coding
description:
  Transcriptional regulator, LacI family; KEGG: sco:SCO4754 transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI.


ensembl_gene_id: Caci_0462
symbol: Caci_0462
gene_biotype: protein_coding
description:
  Endo-1,4-beta-xylanase; KEGG: tfu:Tfu_1213 xylanase; PFAM: glycoside hydrolase family 11; SMART: cellulose-binding family II; Belongs to the glycosyl hydrolase 11 (cellulase G) family.


ensembl_gene_id: Caci_0467
symbol: Caci_0467
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: ace:Acel_1594 periplasmic sensor signal transduction histidine kinase.


ensembl_gene_id: Caci_0468
symbol: Caci_0468
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: cur:cur_0545 two-component system response regulator MprA.


ensembl_gene_id: Caci_0470
symbol: Caci_0470
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: fra:Francci3_2444 two component transcriptional regulator.


ensembl_gene_id: Caci_0471
symbol: Caci_0471
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: fra:Francci3_2445 periplasmic sensor signal transduction histidine kinase.


ensembl_gene_id: Caci_0474
symbol: Caci_0474
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 11; Ig family protein; cellulose-binding family II; SMART: cellulose-binding family II; Dystroglycan- type cadherin domain protein; KEGG: sde:Sde_3061 xylanase/chitin deacetylase-like; Belongs to the glycosyl hydrolase 11 (cellulase G) family.


ensembl_gene_id: Caci_0475
symbol: Caci_0475
gene_biotype: protein_coding
description:
  PFAM: polysaccharide deacetylase; SMART: cellulose-binding family II; KEGG: sco:SCO2291 secreted acetylxylan esterase.


ensembl_gene_id: Caci_0477
symbol: Caci_0477
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: cms:CMS_0868 putative solute-binding transport protein.


ensembl_gene_id: Caci_0482
symbol: Caci_0482
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: lxx:Lxx06835 major facilitator superfamily H(+) antiporter.


ensembl_gene_id: Caci_0484
symbol: Caci_0484
gene_biotype: protein_coding
description:
  PFAM: putative cell wall binding repeat 2- containing protein; WD40 domain protein beta Propeller; KEGG: ace:Acel_1679 protease-like.


ensembl_gene_id: Caci_0497
symbol: Caci_0497
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF955; SMART: Appr-1-p processing domain protein; KEGG: sus:Acid_6274 hypothetical protein.


ensembl_gene_id: Caci_0498
symbol: purA-2
gene_biotype: protein_coding
description:
  Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.


ensembl_gene_id: Caci_0505
symbol: Caci_0505
gene_biotype: protein_coding
description:
  PFAM: putative cell wall binding repeat 2- containing protein; PKD domain containing protein; SMART: PKD domain containing protein; Parallel beta- helix repeat; KEGG: ace:Acel_1679 protease-like.


ensembl_gene_id: Caci_0506
symbol: Caci_0506
gene_biotype: protein_coding
description:
  PFAM: putative cell wall binding repeat 2- containing protein; SMART: PKD domain containing protein; KEGG: ace:Acel_1461 cell wall binding repeat 2- containing protein.


ensembl_gene_id: Caci_0513
symbol: Caci_0513
gene_biotype: protein_coding
description:
  PFAM: aminoglycoside 3-N-acetyltransferase; KEGG: saq:Sare_2653 aminoglycoside N(3')- acetyltransferase.


ensembl_gene_id: Caci_0516
symbol: Caci_0516
gene_biotype: protein_coding
description:
  PFAM: alpha/beta hydrolase fold protein; KEGG: sgr:SGR_5769 putative alpha/beta hydrolase fold protein protein.


ensembl_gene_id: Caci_0526
symbol: Caci_0526
gene_biotype: protein_coding
description:
  PFAM: alpha/beta hydrolase fold protein; KEGG: sen:SACE_3708 abhydrolase, alpha/beta hydrolase fold protein.


ensembl_gene_id: Caci_0529
symbol: Caci_0529
gene_biotype: protein_coding
description:
  PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: mab:MAB_4054c hypothetical protein.


ensembl_gene_id: Caci_0530
symbol: Caci_0530
gene_biotype: protein_coding
description:
  PFAM: tryptophan halogenase; monooxygenase FAD- binding; FAD dependent oxidoreductase; KEGG: fal:FRAAL4634 putative halogenase.


ensembl_gene_id: Caci_0531
symbol: Caci_0531
gene_biotype: protein_coding
description:
  PFAM: 4'-phosphopantetheinyl transferase; KEGG: hch:HCH_01667 phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily.


ensembl_gene_id: Caci_0539
symbol: Caci_0539
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: kpe:KPK_1427 transporter, major facilitator family.


ensembl_gene_id: Caci_0540
symbol: Caci_0540
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sen:SACE_1630 putative transcriptional regulator.


ensembl_gene_id: Caci_0546
symbol: Caci_0546
gene_biotype: protein_coding
description:
  PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: afe:Lferr_0188 aminotransferase class V.


ensembl_gene_id: Caci_0547
symbol: rimO
gene_biotype: protein_coding
description:
  MiaB-like tRNA modifying enzyme YliG; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.


ensembl_gene_id: Caci_0548
symbol: Caci_0548
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_2123 major facilitator superfamily permease.


ensembl_gene_id: Caci_0550
symbol: Caci_0550
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: dac:Daci_4506 acyl-CoA dehydrogenase domain- containing protein.


ensembl_gene_id: Caci_0557
symbol: Caci_0557
gene_biotype: protein_coding
description:
  Glutamate--ammonia ligase; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: sgr:SGR_5302 putative glutamine synthetase.


ensembl_gene_id: Caci_0559
symbol: Caci_0559
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ava:Ava_0978 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Caci_0560
symbol: Caci_0560
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: fre:Franean1_3989 MarR family transcriptional regulator.


ensembl_gene_id: Caci_0562
symbol: Caci_0562
gene_biotype: protein_coding
description:
  Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: saq:Sare_0956 RNA polymerase ECF-subfamily sigma factor.


ensembl_gene_id: Caci_0574
symbol: Caci_0574
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; UbiE/COQ5 methyltransferase; Methyltransferase type 12; KEGG: bph:Bphy_2889 methyltransferase type 11.


ensembl_gene_id: Caci_0575
symbol: Caci_0575
gene_biotype: protein_coding
description:
  PFAM: 6-phosphogluconate dehydrogenase NAD-binding; NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: oan:Oant_3760 2-hydroxy-3-oxopropionate reductase.


ensembl_gene_id: Caci_0577
symbol: Caci_0577
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; globin; Oxidoreductase FAD-binding domain protein; KEGG: sen:SACE_7206 flavohemoprotein; Belongs to the globin family.


ensembl_gene_id: Caci_0579
symbol: Caci_0579
gene_biotype: protein_coding
description:
  PFAM: peptidase M48 Ste24p; KEGG: sgr:SGR_3027 putative Zn-dependent protease with chaperone function.


ensembl_gene_id: Caci_0583
symbol: rsmI
gene_biotype: protein_coding
description:
  Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.


ensembl_gene_id: Caci_0584
symbol: Caci_0584
gene_biotype: protein_coding
description:
  TIGRFAM: death-on-curing family protein; PFAM: filamentation induced by cAMP protein Fic; KEGG: mav:MAV_3971 death-on-curing protein.


ensembl_gene_id: Caci_0586
symbol: metG
gene_biotype: protein_coding
description:
  methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.


ensembl_gene_id: Caci_0587
symbol: Caci_0587
gene_biotype: protein_coding
description:
  TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: sma:SAV_3589 deoxyribonuclease.


ensembl_gene_id: Caci_0588
symbol: Caci_0588
gene_biotype: protein_coding
description:
  PFAM: Transglycosylase domain protein; protein of unknown function DUF348; G5 domain protein; KEGG: sma:SAV_3588 hypothetical protein.


ensembl_gene_id: Caci_0589
symbol: rsmA
gene_biotype: protein_coding
description:
  Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.


ensembl_gene_id: Caci_0590
symbol: ispE
gene_biotype: protein_coding
description:
  4-diphosphocytidyl-2C-methyl-D-erythritolkinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.


ensembl_gene_id: Caci_0591
symbol: Caci_0591
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; aminoglycoside phosphotransferase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: fal:FRAAL0578 putative serine/threonine protein kinase.


ensembl_gene_id: Caci_0595
symbol: Caci_0595
gene_biotype: protein_coding
description:
  KEGG: rxy:Rxyl_1544 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein.


ensembl_gene_id: Caci_0601
symbol: Caci_0601
gene_biotype: protein_coding
description:
  PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor type A; KEGG: stp:Strop_2880 VWA containing CoxE family protein.


ensembl_gene_id: Caci_0604
symbol: Caci_0604
gene_biotype: protein_coding
description:
  KEGG: sgr:SGR_3601 putative two-component system sensor kinase/response regulator, bifunctional protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: Caci_0606
symbol: Caci_0606
gene_biotype: protein_coding
description:
  PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rle:RL2998 putative hydrolase.


ensembl_gene_id: Caci_0609
symbol: Caci_0609
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: fal:FRAAL5519 two-component system sensor kinase.


ensembl_gene_id: Caci_0610
symbol: Caci_0610
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver; KEGG: nfa:nfa22890 putative two-component system response regulator.


ensembl_gene_id: Caci_0612
symbol: Caci_0612
gene_biotype: protein_coding
description:
  TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: saq:Sare_3223 BadM/Rrf2 family transcriptional regulator.


ensembl_gene_id: Caci_0613
symbol: Caci_0613
gene_biotype: protein_coding
description:
  PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: tfu:Tfu_0869 hypthetical protein.


ensembl_gene_id: Caci_0615
symbol: Caci_0615
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sco:SCO5914 transcriptional regulator.


ensembl_gene_id: Caci_0616
symbol: Caci_0616
gene_biotype: protein_coding
description:
  PFAM: Peptidase M9A collagenase domain protein; Peptidase M9 domain; peptidase domain protein; KEGG: sgr:SGR_1615 putative collagenase.


ensembl_gene_id: Caci_0617
symbol: Caci_0617
gene_biotype: protein_coding
description:
  Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: sgr:SGR_1978 LacI family transcriptional regulator.


ensembl_gene_id: Caci_0623
symbol: Caci_0623
gene_biotype: protein_coding
description:
  PFAM: regulatory protein DeoR; periplasmic binding protein/LacI transcriptional regulator; Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; KEGG: sgr:SGR_290 LacI family transcriptional regulator.


ensembl_gene_id: Caci_0624
symbol: Caci_0624
gene_biotype: protein_coding
description:
  PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sgr:SGR_286 2-hydroxyacid family dehydrogenase.


ensembl_gene_id: Caci_0625
symbol: Caci_0625
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_1705 extracellular solute-binding protein, family 1.


ensembl_gene_id: Caci_0626
symbol: Caci_0626
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: art:Arth_1706 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Caci_0627
symbol: Caci_0627
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: art:Arth_1707 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Caci_0630
symbol: vapC
gene_biotype: protein_coding
description:
  PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.


ensembl_gene_id: Caci_0631
symbol: Caci_0631
gene_biotype: protein_coding
description:
  NADH dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sgr:SGR_6321 putative oxidoreductase.


ensembl_gene_id: Caci_0633
symbol: Caci_0633
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: sma:SAV_7424 ECF subfamily RNA polymerase sigma factor.


ensembl_gene_id: Caci_0635
symbol: Caci_0635
gene_biotype: protein_coding
description:
  PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: stp:Strop_2757 histidine kinase, dimerisation and phosphoacceptor region.


ensembl_gene_id: Caci_0636
symbol: Caci_0636
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; SMART: regulatory protein LuxR; response regulator receiver; KEGG: sgr:SGR_5299 putative two-component system response regulator.


ensembl_gene_id: Caci_0637
symbol: Caci_0637
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sma:SAV_2438 two-component system response regulator.


ensembl_gene_id: Caci_0638
symbol: Caci_0638
gene_biotype: protein_coding
description:
  PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: sma:SAV_2439 two-component system sensor kinase.


ensembl_gene_id: Caci_0639
symbol: Caci_0639
gene_biotype: protein_coding
description:
  KEGG: sma:SAV_3512 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Caci_0644
symbol: Caci_0644
gene_biotype: protein_coding
description:
  KEGG: sma:SAV_3510 cystathionine beta-synthase; TIGRFAM: cystathionine beta-synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; CBS domain containing protein; SMART: CBS domain containing protein.


ensembl_gene_id: Caci_0647
symbol: Caci_0647
gene_biotype: protein_coding
description:
  TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: sen:SACE_1979 delta-1-pyrroline-5-carboxylate dehydrogenase precursor.


ensembl_gene_id: Caci_0649
symbol: Caci_0649
gene_biotype: protein_coding
description:
  PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: sgr:SGR_5899 putative secreted subtilisin- like serine protease.


ensembl_gene_id: Caci_0658
symbol: Caci_0658
gene_biotype: protein_coding
description:
  Cystathionine gamma-synthase; PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sgr:SGR_2579 putative cystathionine gamma- synthase.


ensembl_gene_id: Caci_0662
symbol: Caci_0662
gene_biotype: protein_coding
description:
  TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_5165 major facilitator superfamily permease.


ensembl_gene_id: Caci_0663
symbol: Caci_0663
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; regulatory protein ArsR; SMART: regulatory protein MarR; KEGG: fal:FRAAL0920 hypothetical protein.


ensembl_gene_id: Caci_0664
symbol: Caci_0664
gene_biotype: protein_coding
description:
  TIGRFAM: threonine dehydratase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; amino acid-binding ACT domain protein; KEGG: sma:SAV_3302 threonine dehydratase.


ensembl_gene_id: Caci_0665
symbol: Caci_0665
gene_biotype: protein_coding
description:
  KEGG: sco:SCO4963 ABC transporter ATP-binding protein; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Caci_0667
symbol: Caci_0667
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: tfu:Tfu_3065 tyrosine protein kinase:serine/threonine protein kinase.


ensembl_gene_id: Caci_0668
symbol: greA
gene_biotype: protein_coding
description:
  Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.


ensembl_gene_id: Caci_0670
symbol: mca
gene_biotype: protein_coding
description:
  Mycothiol conjugate amidase Mca; A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl-inositol) S- conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics; Belongs to the MshB deacetylase family. Mca subfamily.


ensembl_gene_id: Caci_0676
symbol: Caci_0676
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: nfa:nfa3720 putative transcriptional regulator.


ensembl_gene_id: Caci_0677
symbol: Caci_0677
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: fal:FRAAL1328 RNA polymerase ECF-subfamily sigma factor.


ensembl_gene_id: Caci_0679
symbol: Caci_0679
gene_biotype: protein_coding
description:
  KEGG: sma:SAV_2776 L-serine dehydratase; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; Belongs to the iron-sulfur dependent L-serine dehydratase family.


ensembl_gene_id: Caci_0682
symbol: Caci_0682
gene_biotype: protein_coding
description:
  PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: fre:Franean1_1653 histidine kinase.


ensembl_gene_id: Caci_0683
symbol: Caci_0683
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; SMART: response regulator receiver; regulatory protein LuxR; KEGG: fre:Franean1_1652 two component LuxR family transcriptional regulator.


ensembl_gene_id: Caci_0684
symbol: Caci_0684
gene_biotype: protein_coding
description:
  PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Torsin; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase; KEGG: sen:SACE_6954 Clp protease ATP binding subunit; Belongs to the ClpA/ClpB family.


ensembl_gene_id: Caci_0689
symbol: Caci_0689
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; KEGG: fre:Franean1_1259 major facilitator transporter.


ensembl_gene_id: Caci_0690
symbol: Caci_0690
gene_biotype: protein_coding
description:
  PFAM: histidine kinase dimerisation and phosphoacceptor region; KEGG: sco:SCO2307 two-component sensor kinase.


ensembl_gene_id: Caci_0691
symbol: Caci_0691
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver; KEGG: sma:SAV_3132 two-component system response regulator.


ensembl_gene_id: Caci_0692
symbol: Caci_0692
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV_5430 ABC transporter ATP-binding protein.


ensembl_gene_id: Caci_0693
symbol: Caci_0693
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF214; KEGG: fal:FRAAL5378 putative ABC transport system integral membrane protein.


ensembl_gene_id: Caci_0697
symbol: Caci_0697
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_3331 ATP-dependent DNA helicase; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP- dependent DNA helicase, RecQ family; PFAM: DEAD/DEAH box helicase domain protein; HRDC domain protein; helicase domain protein; SMART: DEAD-like helicases; helicase domain protein; HRDC domain protein.


ensembl_gene_id: Caci_0701
symbol: Caci_0701
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sco:SCO3414 transcriptional regulator.


ensembl_gene_id: Caci_0706
symbol: Caci_0706
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: sgr:SGR_4062 RNA polymerase ECF-subfamily sigma factor.


ensembl_gene_id: Caci_0708
symbol: Caci_0708
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: sco:SCO3739 epimerase.


ensembl_gene_id: Caci_0709
symbol: Caci_0709
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF74; KEGG: sma:SAV_4658 hypothetical protein; Belongs to the UPF0145 family.


ensembl_gene_id: Caci_0711
symbol: Caci_0711
gene_biotype: protein_coding
description:
  PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: art:Arth_3104 transcriptional regulator, GntR family.


ensembl_gene_id: Caci_0713
symbol: Caci_0713
gene_biotype: protein_coding
description:
  Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.


ensembl_gene_id: Caci_0718
symbol: Caci_0718
gene_biotype: protein_coding
description:
  TIGRFAM: phosphonate degradation operons associated HDIG domain protein; KEGG: mlo:mll1439 hypothetical protein.


ensembl_gene_id: Caci_0719
symbol: Caci_0719
gene_biotype: protein_coding
description:
  TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: aau:AAur_4060 putative 2-dehydro-3- deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase.


ensembl_gene_id: Caci_0720
symbol: Caci_0720
gene_biotype: protein_coding
description:
  N-acyl-D-amino-acid deacylase; PFAM: Amidohydrolase 3; D-aminoacylase domain protein; KEGG: sen:SACE_5301 N-acyl-D-amino-acid deacylase.


ensembl_gene_id: Caci_0724
symbol: Caci_0724
gene_biotype: protein_coding
description:
  PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: aau:AAur_4064 IclR family transcriptional regulator.


ensembl_gene_id: Caci_0726
symbol: Caci_0726
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; aminoglycoside phosphotransferase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sco:SCO4777 protein serine/threonine kinase.


ensembl_gene_id: Caci_0729
symbol: Caci_0729
gene_biotype: protein_coding
description:
  PFAM: low temperature requirement A; KEGG: abb:ABBFA_003514 bacterial low temperature requirement A protein (LtrA) family protein.


ensembl_gene_id: Caci_0732
symbol: Caci_0732
gene_biotype: protein_coding
description:
  PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: sma:SAV_3236 ATP-binding protein.


ensembl_gene_id: Caci_0733
symbol: Caci_0733
gene_biotype: protein_coding
description:
  Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.


ensembl_gene_id: Caci_0734
symbol: pckG
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate carboxykinase (GTP); Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle; Belongs to the phosphoenolpyruvate carboxykinase [GTP] family.


ensembl_gene_id: Caci_0736
symbol: Caci_0736
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: saq:Sare_4901 XRE family transcriptional regulator.


ensembl_gene_id: Caci_0741
symbol: Caci_0741
gene_biotype: protein_coding
description:
  PFAM: transcriptional coactivator/pterin dehydratase; KEGG: nfa:nfa47610 pterin-4-alpha-carbinolamine dehydratase.


ensembl_gene_id: Caci_0743
symbol: Caci_0743
gene_biotype: protein_coding
description:
  Putative PAS/PAC sensor protein; KEGG: sma:SAV_3185 magnesium or manganese-dependent protein phosphatase; TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; PAS fold domain protein; GAF domain protein; PAS fold-4 domain protein; SMART: protein phosphatase 2C domain protein; GAF domain protein; PAS domain containing protein.


ensembl_gene_id: Caci_0745
symbol: Caci_0745
gene_biotype: protein_coding
description:
  PFAM: N-acetyltransferase; KEGG: sma:SAV_5556 N-hydroxyarylamine O- acetyltransferase; Belongs to the arylamine N-acetyltransferase family.


ensembl_gene_id: Caci_0746
symbol: Caci_0746
gene_biotype: protein_coding
description:
  TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; KEGG: nfa:nfa56030 fumarate reductase iron-sulfur subunit.


ensembl_gene_id: Caci_0747
symbol: Caci_0747
gene_biotype: protein_coding
description:
  PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: saq:Sare_4150 succinate dehydrogenase flavoprotein subunit.


ensembl_gene_id: Caci_0750
symbol: Caci_0750
gene_biotype: protein_coding
description:
  PFAM: tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; Pyrrolo-quinoline quinone; KEGG: tfu:Tfu_1756 tyrosine protein kinase:serine/threonine protein kinase.


ensembl_gene_id: Caci_0751
symbol: Caci_0751
gene_biotype: protein_coding
description:
  TIGRFAM: GTP-binding protein TypA; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: tfu:Tfu_2456 GTP-binding protein TypA.


ensembl_gene_id: Caci_0754
symbol: Caci_0754
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; aminoglycoside phosphotransferase; WD-40 repeat protein; SMART: serine/threonine protein kinase; tyrosine protein kinase; WD-40 repeat protein; KEGG: fra:Francci3_3256 WD-40 repeat-containing serine/threonin protein kinase.


ensembl_gene_id: Caci_0755
symbol: Caci_0755
gene_biotype: protein_coding
description:
  PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: sco:SCO5122 peptidase.


ensembl_gene_id: Caci_0756
symbol: mshB1
gene_biotype: protein_coding
description:
  1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D- glucopyranoside deacetylase; Catalyzes the deacetylation of 1D-myo-inositol 2-acetamido-2- deoxy-alpha-D-glucopyranoside (GlcNAc-Ins) in the mycothiol biosynthesis pathway.


ensembl_gene_id: Caci_0760
symbol: Caci_0760
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV_3135 ABC transporter ATP-binding protein.


ensembl_gene_id: Caci_0762
symbol: Caci_0762
gene_biotype: protein_coding
description:
  PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: sco:SCO5131 two-component system sensor kinase.


ensembl_gene_id: Caci_0763
symbol: Caci_0763
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; Bacterio-opsin activator HTH domain protein; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sco:SCO5132 two-component system response regulator.


ensembl_gene_id: Caci_0766
symbol: Caci_0766
gene_biotype: protein_coding
description:
  TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV_3698 transmembrane efflux protein.


ensembl_gene_id: Caci_0769
symbol: Caci_0769
gene_biotype: protein_coding
description:
  KEGG: sgr:SGR_2690 putative succinate dehydrogenase iron-sulfur subunit; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.


ensembl_gene_id: Caci_0770
symbol: Caci_0770
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_6584 succinate dehydrogenase flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; succinate dehydrogenase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase.


ensembl_gene_id: Caci_0772
symbol: Caci_0772
gene_biotype: protein_coding
description:
  TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: sgr:SGR_2687 putative succinate dehydrogenase membrane subunit.


ensembl_gene_id: Caci_0774
symbol: Caci_0774
gene_biotype: protein_coding
description:
  KEGG: sma:SAV_3382 methylmalonyl-CoA mutase, alpha subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase.


ensembl_gene_id: Caci_0781
symbol: Caci_0781
gene_biotype: protein_coding
description:
  Amidohydrolase; KEGG: sgr:SGR_2655 M20/M25/M40 family peptidase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein.


ensembl_gene_id: Caci_0784
symbol: Caci_0784
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: kra:Krad_3947 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Caci_0785
symbol: Caci_0785
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: saq:Sare_0754 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Caci_0786
symbol: Caci_0786
gene_biotype: protein_coding
description:
  Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: Caci_0787
symbol: Caci_0787
gene_biotype: protein_coding
description:
  KEGG: sma:SAV_3365 thymidine phosphorylase; TIGRFAM: pyrimidine-nucleoside phosphorylase; PFAM: glycosyl transferase family 3; Pyrimidine nucleoside phosphorylase domain; Glycosyl transferase, family 3-like.


ensembl_gene_id: Caci_0789
symbol: add
gene_biotype: protein_coding
description:
  KEGG: sco:SCO4901 adenosine deaminase; TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family. Adenosine deaminase subfamily.


ensembl_gene_id: Caci_0792
symbol: Caci_0792
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: sgr:SGR_2636 putative two-component system sensor kinase.


ensembl_gene_id: Caci_0793
symbol: Caci_0793
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sco:SCO4907 transcriptional regulatory protein.


ensembl_gene_id: Caci_0794
symbol: Caci_0794
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: sco:SCO4908 RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Caci_0799
symbol: Caci_0799
gene_biotype: protein_coding
description:
  Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.


ensembl_gene_id: Caci_0801
symbol: Caci_0801
gene_biotype: protein_coding
description:
  Transcriptional regulator, TetR family; PFAM: Tetracyclin repressor domain protein; regulatory protein TetR; KEGG: scl:sce7023 TetR family transcriptional regulator.


ensembl_gene_id: Caci_0803
symbol: Caci_0803
gene_biotype: protein_coding
description:
  PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: sco:SCO4916 phosphomannomutase.


ensembl_gene_id: Caci_0804
symbol: Caci_0804
gene_biotype: protein_coding
description:
  Purine nucleotide phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.


ensembl_gene_id: Caci_0805
symbol: Caci_0805
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; Protein of unknown function DUF895, eukaryotic; KEGG: yen:YE2035 putative membrane transport protein.


ensembl_gene_id: Caci_0806
symbol: Caci_0806
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: sco:SCO4919 flavoprotein disulfide reductase.


ensembl_gene_id: Caci_0809
symbol: Caci_0809
gene_biotype: protein_coding
description:
  PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; phosphoribosylglycinamide synthetase; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: sma:SAV_3337 acyl-CoA carboxylase, alpha subunit.


ensembl_gene_id: Caci_0814
symbol: Caci_0814
gene_biotype: protein_coding
description:
  Diguanylate cyclase with GAF sensor; KEGG: sco:SCO4931 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; SMART: GGDEF domain containing protein; GAF domain protein.


ensembl_gene_id: Caci_0817
symbol: Caci_0817
gene_biotype: protein_coding
description:
  PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: sma:SAV_3329 adenylate cyclase.


ensembl_gene_id: Caci_0819
symbol: Caci_0819
gene_biotype: protein_coding
description:
  TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; biotin protein ligase domain protein; KEGG: sco:SCO4927 ligase.


ensembl_gene_id: Caci_0823
symbol: Caci_0823
gene_biotype: protein_coding
description:
  Maf protein; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.


ensembl_gene_id: Caci_0829
symbol: fdhD
gene_biotype: protein_coding
description:
  Formate dehydrogenase family accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.


ensembl_gene_id: Caci_0830
symbol: Caci_0830
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: saq:Sare_4165 ABC transporter related.


ensembl_gene_id: Caci_0831
symbol: Caci_0831
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: stp:Strop_3786 ABC transporter related.


ensembl_gene_id: Caci_0833
symbol: Caci_0833
gene_biotype: protein_coding
description:
  2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.


ensembl_gene_id: Caci_0834
symbol: Caci_0834
gene_biotype: protein_coding
description:
  Amino acid/peptide transporter; KEGG: sgr:SGR_4473 putative peptide transporter; TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; major facilitator superfamily MFS_1.


ensembl_gene_id: Caci_0835
symbol: Caci_0835
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sma:SAV_3481 two-component system response regulator.


ensembl_gene_id: Caci_0836
symbol: Caci_0836
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: sco:SCO3062 two-component system histidine kinase.


ensembl_gene_id: Caci_0840
symbol: purK
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, ATPase subunit; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).


ensembl_gene_id: Caci_0841
symbol: purE
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).


ensembl_gene_id: Caci_0842
symbol: Caci_0842
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; aminoglycoside phosphotransferase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: fre:Franean1_0245 serine/threonine protein kinase.


ensembl_gene_id: Caci_0845
symbol: Caci_0845
gene_biotype: protein_coding
description:
  NADH-ubiquinone/plastoquinone oxidoreductase chain 3; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain.


ensembl_gene_id: Caci_0846
symbol: nuoB
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, B subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: Caci_0847
symbol: Caci_0847
gene_biotype: protein_coding
description:
  PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: sgr:SGR_2923 putative NADH dehydrogenase subunit.


ensembl_gene_id: Caci_0848
symbol: nuoH
gene_biotype: protein_coding
description:
  NADH dehydrogenase (quinone); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.


ensembl_gene_id: Caci_0849
symbol: nuoI
gene_biotype: protein_coding
description:
  4Fe-4S ferredoxin iron-sulfur binding domain protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: Caci_0850
symbol: Caci_0850
gene_biotype: protein_coding
description:
  NADH-ubiquinone/plastoquinone oxidoreductase chain 6; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: Caci_0851
symbol: nuoK
gene_biotype: protein_coding
description:
  NADH-ubiquinone oxidoreductase chain 4L; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family.


ensembl_gene_id: Caci_0852
symbol: Caci_0852
gene_biotype: protein_coding
description:
  KEGG: sgr:SGR_2918 putative NADH dehydrogenase chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I).


ensembl_gene_id: Caci_0853
symbol: Caci_0853
gene_biotype: protein_coding
description:
  KEGG: sma:SAV_4889 NADH dehydrogenase I chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I).


ensembl_gene_id: Caci_0854
symbol: nuoN
gene_biotype: protein_coding
description:
  Proton-translocating NADH-quinone oxidoreductase, chain N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family.


ensembl_gene_id: Caci_0855
symbol: htpX
gene_biotype: protein_coding
description:
  PFAM: peptidase M48 Ste24p; KEGG: sgr:SGR_2914 M48 family peptidase; Belongs to the peptidase M48B family.


ensembl_gene_id: Caci_0858
symbol: Caci_0858
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF520; KEGG: sco:SCO4614 nucleotide-binding protein; Belongs to the UPF0234 family.


ensembl_gene_id: Caci_0861
symbol: Caci_0861
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 5; KEGG: hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.


ensembl_gene_id: Caci_0862
symbol: Caci_0862
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; SCP-like extracellular; KEGG: sgr:SGR_313 RNA polymerase ECF-subfamily sigma factor.


ensembl_gene_id: Caci_0863
symbol: Caci_0863
gene_biotype: protein_coding
description:
  PFAM: aminoglycoside phosphotransferase; fructosamine kinase; KEGG: stp:Strop_4190 aminoglycoside phosphotransferase.


ensembl_gene_id: Caci_0864
symbol: Caci_0864
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sgr:SGR_6626 putative zinc-binding dehydrogenase.


ensembl_gene_id: Caci_0866
symbol: Caci_0866
gene_biotype: protein_coding
description:
  PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: art:Arth_3970 DNA polymerase III, epsilon subunit.


ensembl_gene_id: Caci_0867
symbol: Caci_0867
gene_biotype: protein_coding
description:
  PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: fal:FRAAL5492 thiol:disulfide interchange protein.


ensembl_gene_id: Caci_0871
symbol: Caci_0871
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1271; globin; SMART: zinc finger CDGSH-type domain protein; KEGG: mbu:Mbur_2272 hypothetical protein.


ensembl_gene_id: Caci_0875
symbol: Caci_0875
gene_biotype: protein_coding
description:
  PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: kra:Krad_3828 ATPase central domain- containing protein.


ensembl_gene_id: Caci_0878
symbol: Caci_0878
gene_biotype: protein_coding
description:
  PFAM: bifunctional deaminase-reductase domain protein; KEGG: stp:Strop_2558 deaminase-reductase domain- containing protein.


ensembl_gene_id: Caci_0880
symbol: Caci_0880
gene_biotype: protein_coding
description:
  PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: sma:SAV_1780 hypothetical protein.


ensembl_gene_id: Caci_0883
symbol: Caci_0883
gene_biotype: protein_coding
description:
  PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; proteinase inhibitor I9 subtilisin propeptide; KEGG: ton:TON_1355 subtilisin-like serine protease precursor.


ensembl_gene_id: Caci_0885
symbol: Caci_0885
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bte:BTH_II0666 AraC family transcriptional regulator.


ensembl_gene_id: Caci_0886
symbol: Caci_0886
gene_biotype: protein_coding
description:
  Alpha-L-fucosidase; PFAM: glycoside hydrolase family 29 (alpha-L- fucosidase); KEGG: sma:SAV_1752 glycosyl hydrolase.


ensembl_gene_id: Caci_0893
symbol: Caci_0893
gene_biotype: protein_coding
description:
  Transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; KEGG: sco:SCO1043 transcriptional regulatory protein.


ensembl_gene_id: Caci_0897
symbol: rpmG
gene_biotype: protein_coding
description:
  TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: sgr:SGR_2884 putative 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.


ensembl_gene_id: Caci_0901
symbol: Caci_0901
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 39; KEGG: fal:FRAAL0683 glycosyl transferase domain/kinase domain-containing protein.


ensembl_gene_id: Caci_0902
symbol: Caci_0902
gene_biotype: protein_coding
description:
  PFAM: GtrA family protein; glycosyl transferase family 2; KEGG: msm:MSMEG_4987 glycosyl transferase.


ensembl_gene_id: Caci_0903
symbol: Caci_0903
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sgr:SGR_3956 putative two-component system sensor kinase.


ensembl_gene_id: Caci_0904
symbol: Caci_0904
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sgr:SGR_3957 putative two-component systen response regulator.


ensembl_gene_id: Caci_0906
symbol: Caci_0906
gene_biotype: protein_coding
description:
  TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV_4904 transmembrane efflux protein.


ensembl_gene_id: Caci_0907
symbol: Caci_0907
gene_biotype: protein_coding
description:
  PFAM: aminotransferase class I and II; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: tfu:Tfu_2661 aspartate aminotransferase.


ensembl_gene_id: Caci_0908
symbol: secE
gene_biotype: protein_coding
description:
  Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.


ensembl_gene_id: Caci_0909
symbol: nusG
gene_biotype: protein_coding
description:
  NusG antitermination factor; Participates in transcription elongation, termination and antitermination.


ensembl_gene_id: Caci_0911
symbol: rplK
gene_biotype: protein_coding
description:
  Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.


ensembl_gene_id: Caci_0912
symbol: rplA
gene_biotype: protein_coding
description:
  Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.


ensembl_gene_id: Caci_0913
symbol: Caci_0913
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: sma:SAV_1786 MerR family transcriptional regulator.


ensembl_gene_id: Caci_0915
symbol: rplJ
gene_biotype: protein_coding
description:
  Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.


ensembl_gene_id: Caci_0916
symbol: rplL
gene_biotype: protein_coding
description:
  Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.


ensembl_gene_id: Caci_0917
symbol: rpoB
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: Caci_0918
symbol: rpoC
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: Caci_0921
symbol: rpsL
gene_biotype: protein_coding
description:
  Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.


ensembl_gene_id: Caci_0922
symbol: rpsG
gene_biotype: protein_coding
description:
  Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.


ensembl_gene_id: Caci_0923
symbol: fusA
gene_biotype: protein_coding
description:
  Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]


ensembl_gene_id: Caci_0924
symbol: tuf
gene_biotype: protein_coding
description:
  Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.


ensembl_gene_id: Caci_0930
symbol: rpsJ
gene_biotype: protein_coding
description:
  Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.


ensembl_gene_id: Caci_0931
symbol: rplC
gene_biotype: protein_coding
description:
  Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.


ensembl_gene_id: Caci_0933
symbol: rplW
gene_biotype: protein_coding
description:
  Ribosomal protein L25/L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.


ensembl_gene_id: Caci_0934
symbol: rplB
gene_biotype: protein_coding
description:
  Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.


ensembl_gene_id: Caci_0935
symbol: rpsS
gene_biotype: protein_coding
description:
  Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.


ensembl_gene_id: Caci_0936
symbol: rplV
gene_biotype: protein_coding
description:
  Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.


ensembl_gene_id: Caci_0937
symbol: rpsC
gene_biotype: protein_coding
description:
  Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.


ensembl_gene_id: Caci_0938
symbol: rplP
gene_biotype: protein_coding
description:
  Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.


ensembl_gene_id: Caci_0939
symbol: rpmC
gene_biotype: protein_coding
description:
  TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: sma:SAV_4934 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.


ensembl_gene_id: Caci_0940
symbol: rpsQ
gene_biotype: protein_coding
description:
  Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.


ensembl_gene_id: Caci_0941
symbol: rplN
gene_biotype: protein_coding
description:
  Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.


ensembl_gene_id: Caci_0942
symbol: rplX
gene_biotype: protein_coding
description:
  Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.


ensembl_gene_id: Caci_0943
symbol: rplE
gene_biotype: protein_coding
description:
  Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.


ensembl_gene_id: Caci_0944
symbol: rpsZ
gene_biotype: protein_coding
description:
  Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.


ensembl_gene_id: Caci_0945
symbol: rpsH
gene_biotype: protein_coding
description:
  Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.


ensembl_gene_id: Caci_0946
symbol: rplF
gene_biotype: protein_coding
description:
  Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.


ensembl_gene_id: Caci_0947
symbol: rplR
gene_biotype: protein_coding
description:
  Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.


ensembl_gene_id: Caci_0948
symbol: rpsE
gene_biotype: protein_coding
description:
  Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.


ensembl_gene_id: Caci_0949
symbol: rpmD
gene_biotype: protein_coding
description:
  TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30; KEGG: sgr:SGR_2816 putative 50S ribosomal protein L30.


ensembl_gene_id: Caci_0950
symbol: rplO
gene_biotype: protein_coding
description:
  Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.


ensembl_gene_id: Caci_0951
symbol: secY
gene_biotype: protein_coding
description:
  Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.


ensembl_gene_id: Caci_0952
symbol: adk
gene_biotype: protein_coding
description:
  Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.


ensembl_gene_id: Caci_0953
symbol: map
gene_biotype: protein_coding
description:
  Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.


ensembl_gene_id: Caci_0956
symbol: Caci_0956
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; response regulator receiver; KEGG: sco:SCO6667 two-component regulator.


ensembl_gene_id: Caci_0957
symbol: Caci_0957
gene_biotype: protein_coding
description:
  PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: sma:SAV_4453 two-component system sensor kinase.


ensembl_gene_id: Caci_0959
symbol: infA
gene_biotype: protein_coding
description:
  Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.


ensembl_gene_id: Caci_0960
symbol: rpmJ
gene_biotype: protein_coding
description:
  TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: kra:Krad_0712 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.


ensembl_gene_id: Caci_0961
symbol: rpsM
gene_biotype: protein_coding
description:
  Ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.


ensembl_gene_id: Caci_0962
symbol: rpsK
gene_biotype: protein_coding
description:
  Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.


ensembl_gene_id: Caci_0963
symbol: rpsD
gene_biotype: protein_coding
description:
  Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.


ensembl_gene_id: Caci_0964
symbol: rpoA
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: Caci_0965
symbol: rplQ
gene_biotype: protein_coding
description:
  TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: sma:SAV_4954 50S ribosomal protein L17.


ensembl_gene_id: Caci_0966
symbol: truA
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.


ensembl_gene_id: Caci_0969
symbol: Caci_0969
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV_1878 ABC transporter ATP-binding protein.


ensembl_gene_id: Caci_0971
symbol: rplM
gene_biotype: protein_coding
description:
  Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.


ensembl_gene_id: Caci_0972
symbol: rpsI
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein S9; KEGG: rsa:RSal33209_1736 SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.


ensembl_gene_id: Caci_0973
symbol: glmM
gene_biotype: protein_coding
description:
  Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.


ensembl_gene_id: Caci_0974
symbol: Caci_0974
gene_biotype: protein_coding
description:
  6-phosphofructokinase; PFAM: phosphofructokinase; KEGG: kra:Krad_4274 diphosphate--fructose-6- phosphate 1-phosphotransferase.


ensembl_gene_id: Caci_0979
symbol: Caci_0979
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rha:RHA1_ro06018 transcriptional regulator.


ensembl_gene_id: Caci_0980
symbol: Caci_0980
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: sco:SCO4996 RNA polymerase ECF sigma factor.


ensembl_gene_id: Caci_0983
symbol: glmS
gene_biotype: protein_coding
description:
  Glucosamine/fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.


ensembl_gene_id: Caci_0984
symbol: acpS
gene_biotype: protein_coding
description:
  Holo-acyl-carrier-protein synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.


ensembl_gene_id: Caci_0986
symbol: nnrD
gene_biotype: protein_coding
description:
  Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.  Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow t [...]


ensembl_gene_id: Caci_0990
symbol: Caci_0990
gene_biotype: protein_coding
description:
  Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.


ensembl_gene_id: Caci_0994
symbol: Caci_0994
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; glycosyl transferase family 2; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; short- chain dehydrogenase/reductase SDR; KEGG: art:Arth_2683 glycosyl transferase, family 2.


ensembl_gene_id: Caci_1001
symbol: Caci_1001
gene_biotype: protein_coding
description:
  TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO4751 acetyltransferase.


ensembl_gene_id: Caci_1002
symbol: tsaD
gene_biotype: protein_coding
description:
  Metalloendopeptidase, glycoprotease family; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.


ensembl_gene_id: Caci_1007
symbol: groS
gene_biotype: protein_coding
description:
  Chaperonin Cpn10; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.


ensembl_gene_id: Caci_1008
symbol: groL
gene_biotype: protein_coding
description:
  Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.


ensembl_gene_id: Caci_1009
symbol: whiB
gene_biotype: protein_coding
description:
  Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.


ensembl_gene_id: Caci_1011
symbol: Caci_1011
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sgr:SGR_2759 putative two-component system response regulator.


ensembl_gene_id: Caci_1012
symbol: guaB
gene_biotype: protein_coding
description:
  Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.


ensembl_gene_id: Caci_1013
symbol: Caci_1013
gene_biotype: protein_coding
description:
  TIGRFAM: IMP dehydrogenase family protein; KEGG: sma:SAV_5001 inositol-5-monophosphate dehydrogenase.


ensembl_gene_id: Caci_1014
symbol: Caci_1014
gene_biotype: protein_coding
description:
  PFAM: FAD dependent oxidoreductase; KEGG: sgr:SGR_2753 putative glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: Caci_1015
symbol: Caci_1015
gene_biotype: protein_coding
description:
  PFAM: glutathione peroxidase; KEGG: rha:RHA1_ro04823 glutathione peroxidase; Belongs to the glutathione peroxidase family.


ensembl_gene_id: Caci_1016
symbol: Caci_1016
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: kra:Krad_0744 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Caci_1018
symbol: Caci_1018
gene_biotype: protein_coding
description:
  PFAM: Aldehyde Dehydrogenase; KEGG: sma:SAV_5016 succinic semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: Caci_1019
symbol: Caci_1019
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF909; KEGG: sen:SACE_6783 hypothetical protein; Belongs to the WXG100 family.


ensembl_gene_id: Caci_1020
symbol: Caci_1020
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF909; KEGG: msm:MSMEG_1539 hypothetical protein; Belongs to the WXG100 family.


ensembl_gene_id: Caci_1027
symbol: Caci_1027
gene_biotype: protein_coding
description:
  PFAM: peptidase S41; SMART: PDZ/DHR/GLGF domain protein; peptidase S41; KEGG: rca:Rcas_2857 peptidase S41.


ensembl_gene_id: Caci_1029
symbol: Caci_1029
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sgr:SGR_3133 putative ABC transporter ATP- binding protein.


ensembl_gene_id: Caci_1030
symbol: Caci_1030
gene_biotype: protein_coding
description:
  PFAM: Peptidoglycan-binding domain 1 protein; KEGG: fre:Franean1_0084 peptidoglycan binding domain-containing protein.


ensembl_gene_id: Caci_1032
symbol: Caci_1032
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sma:SAV_2405 two-component system response regulator.


ensembl_gene_id: Caci_1033
symbol: Caci_1033
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: mva:Mvan_3840 integral membrane sensor signal transduction histidine kinase.


ensembl_gene_id: Caci_1034
symbol: Caci_1034
gene_biotype: protein_coding
description:
  TIGRFAM: conserved repeat domain protein; LPXTG- motif cell wall anchor domain protein; KEGG: aby:ABAYE0792 hypothetical protein.


ensembl_gene_id: Caci_1040
symbol: nadK
gene_biotype: protein_coding
description:
  ATP-NAD/AcoX kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.


ensembl_gene_id: Caci_1041
symbol: Caci_1041
gene_biotype: protein_coding
description:
  PFAM: methylenetetrahydrofolate reductase; KEGG: fre:Franean1_6374 methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.


ensembl_gene_id: Caci_1044
symbol: Caci_1044
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mva:Mvan_0234 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Caci_1046
symbol: Caci_1046
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: stp:Strop_0077 ECF subfamily RNA polymerase sigma-24 factor.


ensembl_gene_id: Caci_1047
symbol: Caci_1047
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: saq:Sare_0637 alcohol dehydrogenase.


ensembl_gene_id: Caci_1048
symbol: Caci_1048
gene_biotype: protein_coding
description:
  Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: sma:SAV_488 TetR family transcriptional regulator.


ensembl_gene_id: Caci_1052
symbol: Caci_1052
gene_biotype: protein_coding
description:
  PFAM: coagulation factor 5/8 type domain protein; glycoside hydrolase family 2 sugar binding; KEGG: sma:SAV_887 glycosyl hydrolase.


ensembl_gene_id: Caci_1055
symbol: Caci_1055
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: sgr:SGR_4062 RNA polymerase ECF-subfamily sigma factor.


ensembl_gene_id: Caci_1065
symbol: Caci_1065
gene_biotype: protein_coding
description:
  PFAM: TAP domain protein; alpha/beta hydrolase fold protein; KEGG: sen:SACE_3239 proteinase (secreted protein).


ensembl_gene_id: Caci_1067
symbol: Caci_1067
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: fre:Franean1_5616 LuxR family transcriptional regulator.


ensembl_gene_id: Caci_1068
symbol: Caci_1068
gene_biotype: protein_coding
description:
  PFAM: bifunctional deaminase-reductase domain protein; KEGG: saq:Sare_3935 deaminase-reductase domain- containing protein.


ensembl_gene_id: Caci_1071
symbol: Caci_1071
gene_biotype: protein_coding
description:
  PFAM: Indole-3-glycerol phosphate synthase; KEGG: ace:Acel_1073 indole-3-glycerol phosphate synthase.


ensembl_gene_id: Caci_1072
symbol: Caci_1072
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mab:MAB_0023 LysR family transcriptional regulator.


ensembl_gene_id: Caci_1079
symbol: Caci_1079
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ank:AnaeK_3239 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Caci_1080
symbol: kynA
gene_biotype: protein_coding
description:
  Tryptophan 23-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.


ensembl_gene_id: Caci_1086
symbol: Caci_1086
gene_biotype: protein_coding
description:
  PFAM: Beta-ketoacyl synthase; KEGG: sma:SAV_2838 3-oxoacyl-ACP synthase I; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: Caci_1087
symbol: Caci_1087
gene_biotype: protein_coding
description:
  PFAM: Beta-ketoacyl synthase; KEGG: sma:SAV_2839 3-oxoacyl-ACP synthase II, chain length factor; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: Caci_1091
symbol: accA
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.


ensembl_gene_id: Caci_1092
symbol: Caci_1092
gene_biotype: protein_coding
description:
  Biotin/lipoyl attachment domain-containing protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: Caci_1093
symbol: Caci_1093
gene_biotype: protein_coding
description:
  PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; RimK domain protein ATP-grasp; phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: fre:Franean1_3949 carbamoyl-phosphate synthase L chain ATP-binding.


ensembl_gene_id: Caci_1095
symbol: Caci_1095
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Tetratricopeptide TPR_4; SMART: regulatory protein LuxR; AAA ATPase; KEGG: fal:FRAAL0335 LuxR family transcriptional regulator.


ensembl_gene_id: Caci_1098
symbol: Caci_1098
gene_biotype: protein_coding
description:
  TIGRFAM: dihydroxyacetone kinase, phosphotransfer subunit; phosphocarrier, HPr family; PFAM: PTS system fructose subfamily IIA component; phosphoryl transfer system HPr; KEGG: dvl:Dvul_2007 phosphoenolpyruvate-protein phosphotransferase.


ensembl_gene_id: Caci_1099
symbol: Caci_1099
gene_biotype: protein_coding
description:
  PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: sen:SACE_5292 glycerol operon regulatory protein.


ensembl_gene_id: Caci_1100
symbol: Caci_1100
gene_biotype: protein_coding
description:
  PFAM: major intrinsic protein; KEGG: msm:MSMEG_2124 glycerol uptake facilitator, MIP channel; Belongs to the MIP/aquaporin (TC 1.A.8) family.


ensembl_gene_id: Caci_1101
symbol: Caci_1101
gene_biotype: protein_coding
description:
  KEGG: msm:MSMEG_2123 dihydroxyacetone kinase, DhaK subunit; TIGRFAM: dihydroxyacetone kinase, DhaK subunit; PFAM: Dak kinase.


ensembl_gene_id: Caci_1102
symbol: Caci_1102
gene_biotype: protein_coding
description:
  TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; KEGG: sco:SCO7072 hypothetical protein.


ensembl_gene_id: Caci_1103
symbol: Caci_1103
gene_biotype: protein_coding
description:
  PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: hau:Haur_1528 phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: Caci_1107
symbol: Caci_1107
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase domain protein; Semialdehyde dehydrogenase NAD - binding; Oxidoreductase domain; KEGG: sco:SCO2847 oxidoreductase.


ensembl_gene_id: Caci_1119
symbol: Caci_1119
gene_biotype: protein_coding
description:
  PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: ace:Acel_1406 peptidase S9 prolyl oligopeptidase.


ensembl_gene_id: Caci_1120
symbol: Caci_1120
gene_biotype: protein_coding
description:
  PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: sco:SCO6529 ATP/GTP binding protein.


ensembl_gene_id: Caci_1126
symbol: Caci_1126
gene_biotype: protein_coding
description:
  PFAM: copper resistance protein CopC; copper resistance D domain protein; KEGG: sgr:SGR_3627 putative integral membrane protein.


ensembl_gene_id: Caci_1131
symbol: Caci_1131
gene_biotype: protein_coding
description:
  PFAM: FAD linked oxidase domain protein; Berberine/berberine domain protein; KEGG: rxy:Rxyl_3087 FAD linked oxidase-like protein.


ensembl_gene_id: Caci_1132
symbol: Caci_1132
gene_biotype: protein_coding
description:
  PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sco:SCO6321 integral membrane protein.


ensembl_gene_id: Caci_1134
symbol: Caci_1134
gene_biotype: protein_coding
description:
  PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: fal:FRAAL3355 putative transcriptional regulatory protein.


ensembl_gene_id: Caci_1137
symbol: Caci_1137
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; heat shock protein DnaJ domain protein; SMART: serine/threonine protein kinase; von Willebrand factor type A; tyrosine protein kinase; KEGG: sco:SCO2668 hypothetical protein.


ensembl_gene_id: Caci_1139
symbol: Caci_1139
gene_biotype: protein_coding
description:
  Amidohydrolase; KEGG: nmu:Nmul_A0853 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein.


ensembl_gene_id: Caci_1141
symbol: Caci_1141
gene_biotype: protein_coding
description:
  6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.


ensembl_gene_id: Caci_1144
symbol: Caci_1144
gene_biotype: protein_coding
description:
  PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: sgr:SGR_3466 putative D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.


ensembl_gene_id: Caci_1146
symbol: Caci_1146
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sma:SAV_1383 hydrolase.


ensembl_gene_id: Caci_1148
symbol: Caci_1148
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rha:RHA1_ro01501 3-oxoacyl-[acyl-carrier- protein] reductase.


ensembl_gene_id: Caci_1150
symbol: Caci_1150
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rha:RHA1_ro01503 3-ketoacyl-(acyl-carrier- protein) reductase.


ensembl_gene_id: Caci_1151
symbol: Caci_1151
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: rha:RHA1_ro02696 acyl-CoA dehydrogenase.


ensembl_gene_id: Caci_1154
symbol: Caci_1154
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: sgr:SGR_500 putative acyl-CoA dehydrogenase.


ensembl_gene_id: Caci_1156
symbol: Caci_1156
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sma:SAV_4773 LysR family transcriptional regulator.


ensembl_gene_id: Caci_1159
symbol: Caci_1159
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: nfa:nfa26040 hypothetical protein.


ensembl_gene_id: Caci_1165
symbol: Caci_1165
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; aminoglycoside phosphotransferase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sma:SAV_2262 serine/threonine protein kinase.


ensembl_gene_id: Caci_1173
symbol: Caci_1173
gene_biotype: protein_coding
description:
  KEGG: sgr:SGR_952 putative oxygen-independent coproporphyrinogen oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: Caci_1178
symbol: Caci_1178
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: hau:Haur_2397 extracellular solute-binding protein.


ensembl_gene_id: Caci_1179
symbol: Caci_1179
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: llm:llmg_1459 putative di/TRI-peptide transport system permease protein.


ensembl_gene_id: Caci_1180
symbol: Caci_1180
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sit:TM1040_2743 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Caci_1181
symbol: Caci_1181
gene_biotype: protein_coding
description:
  KEGG: scl:sce4299 peptide ABC transporter, ATP- binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Caci_1182
symbol: Caci_1182
gene_biotype: protein_coding
description:
  KEGG: scl:sce4298 ABC-type oligopeptide transport system, ATPase component; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Caci_1191
symbol: dtd
gene_biotype: protein_coding
description:
  D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family.


ensembl_gene_id: Caci_1192
symbol: Caci_1192
gene_biotype: protein_coding
description:
  PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: sen:SACE_5519 serine protease membrane protein.


ensembl_gene_id: Caci_1194
symbol: Caci_1194
gene_biotype: protein_coding
description:
  PFAM: transcriptional regulator PadR family protein; KEGG: stp:Strop_0895 transcriptional regulator PadR family protein.


ensembl_gene_id: Caci_1196
symbol: Caci_1196
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: ace:Acel_0627 response regulator receiver protein.


ensembl_gene_id: Caci_1198
symbol: lysA
gene_biotype: protein_coding
description:
  Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.


ensembl_gene_id: Caci_1199
symbol: Caci_1199
gene_biotype: protein_coding
description:
  PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; oxidoreductase domain protein; KEGG: sgr:SGR_2182 putative homoserine dehydrogenase.


ensembl_gene_id: Caci_1200
symbol: Caci_1200
gene_biotype: protein_coding
description:
  Threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine.


ensembl_gene_id: Caci_1201
symbol: thrB
gene_biotype: protein_coding
description:
  Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.


ensembl_gene_id: Caci_1202
symbol: rho
gene_biotype: protein_coding
description:
  Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.


ensembl_gene_id: Caci_1203
symbol: Caci_1203
gene_biotype: protein_coding
description:
  PFAM: dienelactone hydrolase; BAAT/Acyl-CoA thioester hydrolase; KEGG: mxa:MXAN_0913 hypothetical protein.


ensembl_gene_id: Caci_1205
symbol: prfA
gene_biotype: protein_coding
description:
  Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.


ensembl_gene_id: Caci_1206
symbol: prmC
gene_biotype: protein_coding
description:
  Modification methylase, HemK family; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.


ensembl_gene_id: Caci_1207
symbol: Caci_1207
gene_biotype: protein_coding
description:
  TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: sgr:SGR_2174 hypothetical protein; Belongs to the SUA5 family.


ensembl_gene_id: Caci_1212
symbol: atpB
gene_biotype: protein_coding
description:
  ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.


ensembl_gene_id: Caci_1213
symbol: atpE
gene_biotype: protein_coding
description:
  ATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: Caci_1214
symbol: atpF
gene_biotype: protein_coding
description:
  ATP synthase F0, B subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.


ensembl_gene_id: Caci_1215
symbol: atpH
gene_biotype: protein_coding
description:
  ATP synthase F1, delta subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family.


ensembl_gene_id: Caci_1216
symbol: atpA
gene_biotype: protein_coding
description:
  ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.


ensembl_gene_id: Caci_1217
symbol: atpG
gene_biotype: protein_coding
description:
  ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.


ensembl_gene_id: Caci_1218
symbol: atpD
gene_biotype: protein_coding
description:
  ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.


ensembl_gene_id: Caci_1219
symbol: atpC
gene_biotype: protein_coding
description:
  ATP synthase F1, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.


ensembl_gene_id: Caci_1221
symbol: Caci_1221
gene_biotype: protein_coding
description:
  TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: nca:Noca_1770 ATP:cob(I)alamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.


ensembl_gene_id: Caci_1223
symbol: murA
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine1- carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.


ensembl_gene_id: Caci_1224
symbol: Caci_1224
gene_biotype: protein_coding
description:
  PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; dihydrodipicolinate reductase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: sco:SCO5385 3-hydroxybutyryl-CoA dehydrogenase.


ensembl_gene_id: Caci_1226
symbol: Caci_1226
gene_biotype: protein_coding
description:
  KEGG: sgr:SGR_1171 putative methylmalonyl-CoA mutase alpha subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12- binding domain protein.


ensembl_gene_id: Caci_1229
symbol: nucS
gene_biotype: protein_coding
description:
  Protein of unknown function DUF91; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.


ensembl_gene_id: Caci_1234
symbol: Caci_1234
gene_biotype: protein_coding
description:
  PFAM: Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: stp:Strop_4244 transcriptional activator domain-containing protein.


ensembl_gene_id: Caci_1237
symbol: Caci_1237
gene_biotype: protein_coding
description:
  PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: nca:Noca_1784 3-hydroxyacyl-CoA dehydrogenase.


ensembl_gene_id: Caci_1240
symbol: Caci_1240
gene_biotype: protein_coding
description:
  Sodium/calcium exchanger membrane region; Ca(+)/H(+) antiporter that extrudes calcium in exchange for external protons.


ensembl_gene_id: Caci_1248
symbol: Caci_1248
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; regulatory protein LuxR; sigma-70 region 4 domain protein; KEGG: fre:Franean1_0089 ECF subfamily RNA polymerase sigma-24 factor.


ensembl_gene_id: Caci_1252
symbol: Caci_1252
gene_biotype: protein_coding
description:
  TIGRFAM: crotonyl-CoA reductase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sgr:SGR_1170 putative crotonyl CoA reductase.


ensembl_gene_id: Caci_1254
symbol: Caci_1254
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver; KEGG: sma:SAV_5747 two-component system response regulator.


ensembl_gene_id: Caci_1255
symbol: Caci_1255
gene_biotype: protein_coding
description:
  PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: sma:SAV_5746 two-component system sensor kinase.


ensembl_gene_id: Caci_1256
symbol: Caci_1256
gene_biotype: protein_coding
description:
  PFAM: Monogalactosyldiacylglycerol synthase; KEGG: stp:Strop_0647 UDP-N-acetylglucosamine:LPS N- acetylglucosamine transferase-like protein.


ensembl_gene_id: Caci_1258
symbol: Caci_1258
gene_biotype: protein_coding
description:
  TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sma:SAV_2857 hypothetical protein.


ensembl_gene_id: Caci_1259
symbol: Caci_1259
gene_biotype: protein_coding
description:
  KEGG: sco:SCO5399 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Caci_1260
symbol: Caci_1260
gene_biotype: protein_coding
description:
  TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; KEGG: sma:SAV_2855 lysine arginine ornithine transport system kinase.


ensembl_gene_id: Caci_1264
symbol: Caci_1264
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sgr:SGR_4273 MarR family transcriptional regulator.


ensembl_gene_id: Caci_1265
symbol: Caci_1265
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_1339 major facilitator superfamily permease.


ensembl_gene_id: Caci_1268
symbol: ilvD
gene_biotype: protein_coding
description:
  KEGG: stp:Strop_1231 dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; Belongs to the IlvD/Edd family.


ensembl_gene_id: Caci_1273
symbol: Caci_1273
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sco:SCO5413 MarR-transcriptional regulator.


ensembl_gene_id: Caci_1274
symbol: Caci_1274
gene_biotype: protein_coding
description:
  KEGG: sco:SCO5415 isobutyryl-CoA mutase A; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase.


ensembl_gene_id: Caci_1281
symbol: Caci_1281
gene_biotype: protein_coding
description:
  PFAM: Enoyl-CoA hydratase/isomerase; KEGG: tfu:Tfu_0590 short chain enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: Caci_1285
symbol: Caci_1285
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV_2769 ABC transporter permease protein.


ensembl_gene_id: Caci_1286
symbol: Caci_1286
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: sma:SAV_2768 ABC transporter solute-binding protein.


ensembl_gene_id: Caci_1287
symbol: Caci_1287
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV_2767 ABC transporter permease protein.


ensembl_gene_id: Caci_1288
symbol: Caci_1288
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tfu:Tfu_1822 oligopeptide transport integral membrane protein.


ensembl_gene_id: Caci_1290
symbol: Caci_1290
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tfu:Tfu_1820 putative peptide transport system permease protein.


ensembl_gene_id: Caci_1291
symbol: Caci_1291
gene_biotype: protein_coding
description:
  KEGG: sma:SAV_2766 ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Caci_1292
symbol: Caci_1292
gene_biotype: protein_coding
description:
  Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: sco:SCO5480 oligopeptide ABC transporter ATP- binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Caci_1297
symbol: Caci_1297
gene_biotype: protein_coding
description:
  PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: tfu:Tfu_0593 electron transfer flavoprotein, beta subunit.


ensembl_gene_id: Caci_1298
symbol: Caci_1298
gene_biotype: protein_coding
description:
  PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; KEGG: fal:FRAAL5877 electron transfer flavoprotein subunit alpha.


ensembl_gene_id: Caci_1299
symbol: Caci_1299
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: nfa:nfa23650 putative serine/threonine protein kinase.


ensembl_gene_id: Caci_1300
symbol: Caci_1300
gene_biotype: protein_coding
description:
  PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: fre:Franean1_0818 membrane bound O-acyl transferase MBOAT family protein; Belongs to the membrane-bound acyltransferase family.


ensembl_gene_id: Caci_1302
symbol: Caci_1302
gene_biotype: protein_coding
description:
  PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sgr:SGR_2029 putative pyridoxal-phosphate- dependent aminotransferase.


ensembl_gene_id: Caci_1305
symbol: Caci_1305
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rha:RHA1_ro01381 ferredoxin--NAD(+) reductase.


ensembl_gene_id: Caci_1306
symbol: mnmA
gene_biotype: protein_coding
description:
  tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.


ensembl_gene_id: Caci_1307
symbol: Caci_1307
gene_biotype: protein_coding
description:
  PFAM: penicillin-binding protein transpeptidase; KEGG: sco:SCO3156 penicillin-binding protein (secreted protein).


ensembl_gene_id: Caci_1308
symbol: Caci_1308
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: fre:Franean1_1981 MarR family transcriptional regulator.


ensembl_gene_id: Caci_1313
symbol: ligA
gene_biotype: protein_coding
description:
  DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily.


ensembl_gene_id: Caci_1314
symbol: Caci_1314
gene_biotype: protein_coding
description:
  KEGG: sgr:SGR_2020 putative phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein.


ensembl_gene_id: Caci_1315
symbol: Caci_1315
gene_biotype: protein_coding
description:
  TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: stp:Strop_2922 PhzF family phenazine biosynthesis protein.


ensembl_gene_id: Caci_1316
symbol: Caci_1316
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; aminoglycoside phosphotransferase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: saq:Sare_0798 serine/threonine protein kinase.


ensembl_gene_id: Caci_1317
symbol: gatC
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.


ensembl_gene_id: Caci_1318
symbol: gatA
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) amidotransferase, A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).


ensembl_gene_id: Caci_1322
symbol: gatB
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.


ensembl_gene_id: Caci_1323
symbol: Caci_1323
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: nfa:nfa35090 putative dehydrogenase.


ensembl_gene_id: Caci_1325
symbol: Caci_1325
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase cyclophilin type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.


ensembl_gene_id: Caci_1326
symbol: Caci_1326
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sgr:SGR_6656 putative oxidoreductase.


ensembl_gene_id: Caci_1327
symbol: Caci_1327
gene_biotype: protein_coding
description:
  PFAM: Ricin B lectin; SMART: Ricin B lectin; KEGG: cbe:Cbei_2675 coagulation factor 5/8 type domain protein.


ensembl_gene_id: Caci_1329
symbol: Caci_1329
gene_biotype: protein_coding
description:
  PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: sma:SAV_2114 LacI family transcriptional regulator.


ensembl_gene_id: Caci_1336
symbol: Caci_1336
gene_biotype: protein_coding
description:
  PFAM: Helix-turn-helix type 11 domain protein; regulatory protein DeoR; KEGG: nfa:nfa51350 putative transcriptional regulator.


ensembl_gene_id: Caci_1338
symbol: gltX
gene_biotype: protein_coding
description:
  glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).


ensembl_gene_id: Caci_1339
symbol: Caci_1339
gene_biotype: protein_coding
description:
  5-oxopent-3-ene-1,2, 5-tricarboxylatedecarboxylase; PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: sgr:SGR_1933 putative fumarylacetoacetate (FAA) hydrolase family protein.


ensembl_gene_id: Caci_1341
symbol: Caci_1341
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sgr:SGR_5895 LysR family transcriptional regulator.


ensembl_gene_id: Caci_1344
symbol: Caci_1344
gene_biotype: protein_coding
description:
  KEGG: saq:Sare_1079 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI.


ensembl_gene_id: Caci_1345
symbol: Caci_1345
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 38; glycosyl hydrolase 38 domain protein; Glycoside hydrolase family 38 central region; KEGG: stp:Strop_1191 glycoside hydrolase family protein.


ensembl_gene_id: Caci_1349
symbol: Caci_1349
gene_biotype: protein_coding
description:
  Beta-galactosidase; KEGG: sgr:SGR_371 putative beta-glucosidase; TIGRFAM: beta-galactosidase; PFAM: glycoside hydrolase family 1.


ensembl_gene_id: Caci_1352
symbol: Caci_1352
gene_biotype: protein_coding
description:
  KEGG: sma:SAV_875 proline iminopeptidase; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold protein; Belongs to the peptidase S33 family.


ensembl_gene_id: Caci_1353
symbol: Caci_1353
gene_biotype: protein_coding
description:
  Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.


ensembl_gene_id: Caci_1354
symbol: Caci_1354
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: rha:RHA1_ro02297 acyl CoA dehydrogenase.


ensembl_gene_id: Caci_1359
symbol: Caci_1359
gene_biotype: protein_coding
description:
  PFAM: Na+/solute symporter; KEGG: sco:SCO5229 permease; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: Caci_1360
symbol: Caci_1360
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: fal:FRAAL2829 putative acyl-CoA dehydrogenase.


ensembl_gene_id: Caci_1361
symbol: Caci_1361
gene_biotype: protein_coding
description:
  PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: sen:SACE_3140 hypothetical protein.


ensembl_gene_id: Caci_1362
symbol: Caci_1362
gene_biotype: protein_coding
description:
  PFAM: transcriptional regulator PadR family protein; KEGG: rha:RHA1_ro02485 PadR family transcriptional regulator.


ensembl_gene_id: Caci_1365
symbol: Caci_1365
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: nca:Noca_2770 acyl-CoA dehydrogenase domain- containing protein.


ensembl_gene_id: Caci_1366
symbol: Caci_1366
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; KEGG: nca:Noca_2769 acyl-CoA dehydrogenase domain- containing protein.


ensembl_gene_id: Caci_1368
symbol: Caci_1368
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: nca:Noca_2766 short chain dehydrogenase.


ensembl_gene_id: Caci_1370
symbol: Caci_1370
gene_biotype: protein_coding
description:
  acetyl-CoA acetyltransferase; KEGG: sgr:SGR_5494 putative thiolase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Caci_1373
symbol: Caci_1373
gene_biotype: protein_coding
description:
  Alkane 1-monooxygenase; PFAM: fatty acid desaturase; KEGG: fre:Franean1_2192 alkane 1-monooxygenase.


ensembl_gene_id: Caci_1374
symbol: mraY
gene_biotype: protein_coding
description:
  phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.


ensembl_gene_id: Caci_1375
symbol: Caci_1375
gene_biotype: protein_coding
description:
  PFAM: Hemerythrin HHE cation binding domain protein; KEGG: fre:Franean1_2183 hemerythrin HHE cation binding domain-containing protein.


ensembl_gene_id: Caci_1376
symbol: Caci_1376
gene_biotype: protein_coding
description:
  PFAM: Helix-turn-helix type 11 domain protein; regulatory protein DeoR; KEGG: fre:Franean1_1647 helix-turn-helix type 11 domain-containing protein.


ensembl_gene_id: Caci_1378
symbol: Caci_1378
gene_biotype: protein_coding
description:
  PFAM: 2-nitropropane dioxygenase NPD; KEGG: mav:MAV_0607 oxidoreductase, 2-nitropropane dioxygenase family protein.


ensembl_gene_id: Caci_1383
symbol: Caci_1383
gene_biotype: protein_coding
description:
  KEGG: saq:Sare_4550 daunorubicin resistance ABC transporter ATPase subunit; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Caci_1385
symbol: Caci_1385
gene_biotype: protein_coding
description:
  Transcriptional regulator, winged helix family; PFAM: transcriptional activator domain; Tetratricopeptide TPR_4; transcriptional regulator domain protein; KEGG: nfa:nfa34460 putative transcriptional regulator.


ensembl_gene_id: Caci_1386
symbol: Caci_1386
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: rha:RHA1_ro04653 short chain dehydrogenase.


ensembl_gene_id: Caci_1387
symbol: Caci_1387
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rha:RHA1_ro04654 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Caci_1390
symbol: Caci_1390
gene_biotype: protein_coding
description:
  PFAM: penicillin-binding protein transpeptidase; KEGG: sgr:SGR_4647 putative penicillin-binding protein.


ensembl_gene_id: Caci_1395
symbol: Caci_1395
gene_biotype: protein_coding
description:
  Putative signal transduction protein with CBS domains; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: sgr:SGR_2315 hypothetical protein.


ensembl_gene_id: Caci_1396
symbol: Caci_1396
gene_biotype: protein_coding
description:
  TIGRFAM: histidinol-phosphate phosphatase; PFAM: inositol monophosphatase; KEGG: sma:SAV_3050 fructose-1,6-bisphosphatase.


ensembl_gene_id: Caci_1402
symbol: Caci_1402
gene_biotype: protein_coding
description:
  FHA domain containing protein; PFAM: Forkhead-associated protein; cell divisionFtsK/SpoIIIE; SMART: Forkhead-associated protein; KEGG: ace:Acel_1741 FHA domain-containing protein.


ensembl_gene_id: Caci_1403
symbol: Caci_1403
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sma:SAV_5100 serine/threonine protein kinase.


ensembl_gene_id: Caci_1404
symbol: Caci_1404
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sco:SCO2973 serine/threonine protein kinase.


ensembl_gene_id: Caci_1405
symbol: prfB
gene_biotype: protein_coding
description:
  Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.


ensembl_gene_id: Caci_1407
symbol: ftsE
gene_biotype: protein_coding
description:
  Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.


ensembl_gene_id: Caci_1408
symbol: Caci_1408
gene_biotype: protein_coding
description:
  Cell division protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.


ensembl_gene_id: Caci_1409
symbol: smpB
gene_biotype: protein_coding
description:
  SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]


ensembl_gene_id: Caci_1412
symbol: Caci_1412
gene_biotype: protein_coding
description:
  PFAM: type III restriction protein res subunit; helicase domain protein; restriction endonuclease; SMART: DEAD-like helicases; helicase domain protein; KEGG: nca:Noca_2280 type III restriction enzyme, res subunit.


ensembl_gene_id: Caci_1414
symbol: Caci_1414
gene_biotype: protein_coding
description:
  TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: nca:Noca_2284 DNA-cytosine methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.


ensembl_gene_id: Caci_1415
symbol: Caci_1415
gene_biotype: protein_coding
description:
  TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; KEGG: mjl:Mjls_0823 DNA mismatch endonuclease vsr.


ensembl_gene_id: Caci_1421
symbol: Caci_1421
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: sma:SAV_86 erythropoiesis-stimulating protein.


ensembl_gene_id: Caci_1425
symbol: lig
gene_biotype: protein_coding
description:
  DNA ligase I, ATP-dependent Dnl1; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.


ensembl_gene_id: Caci_1426
symbol: Caci_1426
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: sma:SAV_6340 ECF subfamily RNA polymerase sigma factor.


ensembl_gene_id: Caci_1428
symbol: Caci_1428
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bcz:BCZK2527 ubiquinone/menaquinone biosynthesis methyltransferase.


ensembl_gene_id: Caci_1431
symbol: Caci_1431
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; short- chain dehydrogenase/reductase SDR; KEGG: msm:MSMEG_6843 NAD-dependent epimerase/dehydratase.


ensembl_gene_id: Caci_1432
symbol: Caci_1432
gene_biotype: protein_coding
description:
  PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: saq:Sare_3489 LacI family transcription regulator.


ensembl_gene_id: Caci_1433
symbol: Caci_1433
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 42 domain 5 loop region; KEGG: kra:Krad_3466 glycoside hydrolase family protein.


ensembl_gene_id: Caci_1434
symbol: Caci_1434
gene_biotype: protein_coding
description:
  KEGG: dge:Dgeo_2697 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI.


ensembl_gene_id: Caci_1435
symbol: Caci_1435
gene_biotype: protein_coding
description:
  Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: sgr:SGR_5341 putative phage shock protein A.


ensembl_gene_id: Caci_1436
symbol: Caci_1436
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF6 transmembrane; KEGG: sen:SACE_3810 integral membrane protein.


ensembl_gene_id: Caci_1437
symbol: Caci_1437
gene_biotype: protein_coding
description:
  PFAM: alpha/beta hydrolase fold protein; KEGG: bph:Bphy_3921 alpha/beta hydrolase fold protein protein.


ensembl_gene_id: Caci_1439
symbol: Caci_1439
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_373 major facilitator superfamily permease.


ensembl_gene_id: Caci_1441
symbol: rnz
gene_biotype: protein_coding
description:
  Beta-lactamase domain protein; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.


ensembl_gene_id: Caci_1443
symbol: Caci_1443
gene_biotype: protein_coding
description:
  PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: gsu:GSU2516 rhodanese-like domain-containing protein.


ensembl_gene_id: Caci_1444
symbol: Caci_1444
gene_biotype: protein_coding
description:
  Putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: sen:SACE_3978 cyclic nucleotide-binding domain-containing protein.


ensembl_gene_id: Caci_1445
symbol: Caci_1445
gene_biotype: protein_coding
description:
  Chitinase; PFAM: Carbohydrate-binding CenC domain protein; KEGG: sco:SCO6012 secreted chitinase (secreted protein).


ensembl_gene_id: Caci_1447
symbol: Caci_1447
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sco:SCO3773 LysR family transcriptional regulator.


ensembl_gene_id: Caci_1448
symbol: Caci_1448
gene_biotype: protein_coding
description:
  PFAM: penicillin-binding protein transpeptidase; NTF2 domain protein transpeptidase; KEGG: sco:SCO3156 penicillin-binding protein (secreted protein).


ensembl_gene_id: Caci_1449
symbol: Caci_1449
gene_biotype: protein_coding
description:
  PFAM: Platelet-activating factor acetylhydrolase plasma/intracellular isoform II; KEGG: sma:SAV_819 lipase.


ensembl_gene_id: Caci_1451
symbol: Caci_1451
gene_biotype: protein_coding
description:
  TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: sgr:SGR_3670 putative DNA-damage-inducible protein F.


ensembl_gene_id: Caci_1453
symbol: Caci_1453
gene_biotype: protein_coding
description:
  PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: sma:SAV_6651 GntR family transcriptional regulator.


ensembl_gene_id: Caci_1454
symbol: Caci_1454
gene_biotype: protein_coding
description:
  Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: bxe:Bxe_B2962 ABC sugar transporter, inner membrane subunit; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Caci_1455
symbol: Caci_1455
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV_7280 sugar ABC transporter ATP- binding protein.


ensembl_gene_id: Caci_1457
symbol: Caci_1457
gene_biotype: protein_coding
description:
  5-carboxymethyl-2-hydroxymuconateDelta- isomerase; PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: sen:SACE_3938 putative 2-hydroxyhepta-2,4- diene-1,7-dioate isomerase.


ensembl_gene_id: Caci_1459
symbol: Caci_1459
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: sma:SAV_7283 dehydrogenase.


ensembl_gene_id: Caci_1462
symbol: Caci_1462
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: sen:SACE_3507 CoB--CoM heterodisulfide reductase.


ensembl_gene_id: Caci_1463
symbol: Caci_1463
gene_biotype: protein_coding
description:
  TIGRFAM: iron-sulfur cluster binding protein; PFAM: protein of unknown function DUF162; KEGG: mgi:Mflv_3703 iron-sulfur cluster binding protein.


ensembl_gene_id: Caci_1465
symbol: Caci_1465
gene_biotype: protein_coding
description:
  TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-4- dehydrorhamnose reductase; 3-beta hydroxysteroid dehydrogenase/isomerase; short-chain dehydrogenase/reductase SDR; KEGG: cjk:jk1098 hypothetical protein; Belongs to the NAD(P)-dependent epimerase/dehydratase family.


ensembl_gene_id: Caci_1466
symbol: Caci_1466
gene_biotype: protein_coding
description:
  PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: fre:Franean1_0560 cold-shock DNA-binding domain-containing protein.


ensembl_gene_id: Caci_1467
symbol: Caci_1467
gene_biotype: protein_coding
description:
  Malate dehydrogenase (oxaloacetate- decarboxylating); PFAM: malic protein NAD-binding; malic protein domain protein; KEGG: sgr:SGR_4581 putative malate oxidoreductase.


ensembl_gene_id: Caci_1471
symbol: Caci_1471
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF179; KEGG: sco:SCO2948 hypothetical protein; Belongs to the UPF0301 (AlgH) family.


ensembl_gene_id: Caci_1476
symbol: Caci_1476
gene_biotype: protein_coding
description:
  PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: sco:SCO2940 oxidoreductase.


ensembl_gene_id: Caci_1477
symbol: Caci_1477
gene_biotype: protein_coding
description:
  PFAM: type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: sma:SAV_5140 protein involving differentiation.


ensembl_gene_id: Caci_1479
symbol: Caci_1479
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fre:Franean1_2338 AraC family transcriptional regulator.


ensembl_gene_id: Caci_1481
symbol: Caci_1481
gene_biotype: protein_coding
description:
  PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: sgr:SGR_4602 IclR family transcriptional regulator.


ensembl_gene_id: Caci_1485
symbol: Caci_1485
gene_biotype: protein_coding
description:
  PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: sma:SAV_5148 transcription regulator AsnC.


ensembl_gene_id: Caci_1486
symbol: Caci_1486
gene_biotype: protein_coding
description:
  KEGG: sco:SCO2927 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Caci_1489
symbol: Caci_1489
gene_biotype: protein_coding
description:
  Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.


ensembl_gene_id: Caci_1490
symbol: clpS
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.


ensembl_gene_id: Caci_1493
symbol: Caci_1493
gene_biotype: protein_coding
description:
  TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: surface protein from Gram-positive cocci anchor region; KEGG: aau:AAur_3128 LPXTG-motif-containing cell wall anchor protein.


ensembl_gene_id: Caci_1503
symbol: Caci_1503
gene_biotype: protein_coding
description:
  Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: sgr:SGR_4069 regulatory protein.


ensembl_gene_id: Caci_1509
symbol: Caci_1509
gene_biotype: protein_coding
description:
  PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: sgr:SGR_1422 putative DNA polymerase III epsilon subunit.


ensembl_gene_id: Caci_1510
symbol: ffh
gene_biotype: protein_coding
description:
  Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.


ensembl_gene_id: Caci_1512
symbol: rpsP
gene_biotype: protein_coding
description:
  TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: ace:Acel_1561 SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family.


ensembl_gene_id: Caci_1514
symbol: rimM
gene_biotype: protein_coding
description:
  16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.


ensembl_gene_id: Caci_1515
symbol: trmD
gene_biotype: protein_coding
description:
  tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.


ensembl_gene_id: Caci_1516
symbol: rplS
gene_biotype: protein_coding
description:
  Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.


ensembl_gene_id: Caci_1517
symbol: Caci_1517
gene_biotype: protein_coding
description:
  TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: sgr:SGR_1882 putative signal peptidase I; Belongs to the peptidase S26 family.


ensembl_gene_id: Caci_1521
symbol: Caci_1521
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function UPF0102; KEGG: art:Arth_2474 protein of unknown function UPF0102; Belongs to the UPF0102 family.


ensembl_gene_id: Caci_1522
symbol: Caci_1522
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; KEGG: GH10507 gene product from transcript GH10507- RA; K01527 nascent polypeptide-associated complex subunit beta.


ensembl_gene_id: Caci_1523
symbol: Caci_1523
gene_biotype: protein_coding
description:
  Mg chelatase, subunit ChlI; KEGG: tfu:Tfu_0670 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase.


ensembl_gene_id: Caci_1524
symbol: Caci_1524
gene_biotype: protein_coding
description:
  TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: ace:Acel_1548 DNA protecting protein DprA.


ensembl_gene_id: Caci_1525
symbol: Caci_1525
gene_biotype: protein_coding
description:
  PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: sen:SACE_6041 integrase/recombinase; Belongs to the 'phage' integrase family.


ensembl_gene_id: Caci_1526
symbol: Caci_1526
gene_biotype: protein_coding
description:
  RNA polymerase, sigma 28 subunit, FliA/WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: Caci_1529
symbol: rpsB
gene_biotype: protein_coding
description:
  TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: sma:SAV_2627 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.


ensembl_gene_id: Caci_1530
symbol: tsf
gene_biotype: protein_coding
description:
  Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.


ensembl_gene_id: Caci_1532
symbol: frr
gene_biotype: protein_coding
description:
  Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.


ensembl_gene_id: Caci_1533
symbol: Caci_1533
gene_biotype: protein_coding
description:
  PFAM: phosphatidate cytidylyltransferase; KEGG: sma:SAV_2623 phosphatidate cytidylyltransferase; Belongs to the CDS family.


ensembl_gene_id: Caci_1535
symbol: Caci_1535
gene_biotype: protein_coding
description:
  PFAM: transcriptional regulator PadR family protein; KEGG: sma:SAV_1586 PadR-like family transcriptional regulator.


ensembl_gene_id: Caci_1536
symbol: rlmN
gene_biotype: protein_coding
description:
  Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.


ensembl_gene_id: Caci_1538
symbol: Caci_1538
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: fre:Franean1_2363 putative NADH-flavin reductase-like protein.


ensembl_gene_id: Caci_1540
symbol: Caci_1540
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV_2862 ABC transporter ATP-binding protein.


ensembl_gene_id: Caci_1546
symbol: Caci_1546
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rha:RHA1_ro04897 protochlorophyllide reductase.


ensembl_gene_id: Caci_1551
symbol: Caci_1551
gene_biotype: protein_coding
description:
  PFAM: aminotransferase class-III; KEGG: sco:SCO5655 hypothetical protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Caci_1552
symbol: Caci_1552
gene_biotype: protein_coding
description:
  PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: sma:SAV_2611 transcription regulator AsnC.


ensembl_gene_id: Caci_1553
symbol: Caci_1553
gene_biotype: protein_coding
description:
  PFAM: Aldehyde Dehydrogenase; KEGG: sgr:SGR_1845 putative aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: Caci_1554
symbol: Caci_1554
gene_biotype: protein_coding
description:
  TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV_4524 transmembrane efflux protein.


ensembl_gene_id: Caci_1556
symbol: Caci_1556
gene_biotype: protein_coding
description:
  PFAM: NB-ARC domain protein; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sen:SACE_0488 SARP family transcriptional regulator.


ensembl_gene_id: Caci_1557
symbol: Caci_1557
gene_biotype: protein_coding
description:
  2-oxo-acid dehydrogenase E1 subunit, homodimeric type; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).


ensembl_gene_id: Caci_1560
symbol: Caci_1560
gene_biotype: protein_coding
description:
  PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sma:SAV_5802 thiol-specific antioxidant protein.


ensembl_gene_id: Caci_1566
symbol: Caci_1566
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family with aminotransferase domain; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: sma:SAV_7000 GntR family transcriptional regulator.


ensembl_gene_id: Caci_1568
symbol: Caci_1568
gene_biotype: protein_coding
description:
  KEGG: sma:SAV_5842 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Caci_1571
symbol: Caci_1571
gene_biotype: protein_coding
description:
  PFAM: Polyprenyl synthetase; KEGG: saq:Sare_3478 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: Caci_1572
symbol: Caci_1572
gene_biotype: protein_coding
description:
  KEGG: sco:SCO2103 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.


ensembl_gene_id: Caci_1578
symbol: Caci_1578
gene_biotype: protein_coding
description:
  PFAM: DEAD/H associated domain protein; DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicases; helicase domain protein; KEGG: sgr:SGR_1760 putative ATP-dependent DNA helicase.


ensembl_gene_id: Caci_1580
symbol: Caci_1580
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: sgr:SGR_5554 major facilitator superfamily permease.


ensembl_gene_id: Caci_1581
symbol: recA
gene_biotype: protein_coding
description:
  recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.


ensembl_gene_id: Caci_1586
symbol: Caci_1586
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sgr:SGR_6891 putative transcriptional regulator.


ensembl_gene_id: Caci_1589
symbol: Caci_1589
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: mav:MAV_4734 MarR-family protein regulatory protein.


ensembl_gene_id: Caci_1591
symbol: Caci_1591
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; UbiE/COQ5 methyltransferase; Methyltransferase type 12; KEGG: sgr:SGR_6279 putative methyltransferase.


ensembl_gene_id: Caci_1592
symbol: Caci_1592
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: cms:CMS_0203 putative DNA-binding membrane protein.


ensembl_gene_id: Caci_1595
symbol: Caci_1595
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 38; Glycoside hydrolase family 38 central region; glycosyl hydrolase 38 domain protein; KEGG: sma:SAV_1753 alpha-mannosidase.


ensembl_gene_id: Caci_1597
symbol: Caci_1597
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: lxx:Lxx17590 sugar ABC transporter, sugar- binding protein.


ensembl_gene_id: Caci_1598
symbol: Caci_1598
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: efa:EF2233 ABC transporter, permease protein.


ensembl_gene_id: Caci_1599
symbol: Caci_1599
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cbe:Cbei_0771 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Caci_1601
symbol: Caci_1601
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: kra:Krad_0976 oxidoreductase domain- containing protein.


ensembl_gene_id: Caci_1602
symbol: Caci_1602
gene_biotype: protein_coding
description:
  PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: sma:SAV_2089 2-hydroxyacid dehydrogenase.


ensembl_gene_id: Caci_1603
symbol: Caci_1603
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: sgr:SGR_5290 putative oxidoreductase.


ensembl_gene_id: Caci_1604
symbol: Caci_1604
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: syf:Synpcc7942_2418 transcriptional regulator.


ensembl_gene_id: Caci_1605
symbol: Caci_1605
gene_biotype: protein_coding
description:
  PFAM: coagulation factor 5/8 type domain protein; SMART: coagulation factor 5/8 type domain protein; Parallel beta-helix repeat; KEGG: sma:SAV_1723 mycodextranase.


ensembl_gene_id: Caci_1609
symbol: Caci_1609
gene_biotype: protein_coding
description:
  Beta-glucosidase; KEGG: aba:Acid345_4061 beta-glucosidase; PFAM: glycoside hydrolase family 3 domain protein; Carbohydrate binding family 6; Ig family protein; coagulation factor 5/8 type domain protein; SMART: cellulose binding type IV.


ensembl_gene_id: Caci_1610
symbol: Caci_1610
gene_biotype: protein_coding
description:
  PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: nfa:nfa44640 threonine dehydratase.


ensembl_gene_id: Caci_1615
symbol: Caci_1615
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; SMART: ATP-binding region ATPase domain protein; KEGG: sma:SAV_5623 two-component system sensor kinase.


ensembl_gene_id: Caci_1616
symbol: Caci_1616
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sma:SAV_5624 two-component system response regulator.


ensembl_gene_id: Caci_1617
symbol: miaB
gene_biotype: protein_coding
description:
  RNA modification enzyme, MiaB family; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.


ensembl_gene_id: Caci_1618
symbol: Caci_1618
gene_biotype: protein_coding
description:
  AAA ATPase containing von Willebrand factor type A (vWA) domain; KEGG: lpl:lp_1303a cell surface SD repeat- containing protein.


ensembl_gene_id: Caci_1619
symbol: Caci_1619
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sma:SAV_4619 serine/threonine protein kinase.


ensembl_gene_id: Caci_1622
symbol: miaA
gene_biotype: protein_coding
description:
  tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.


ensembl_gene_id: Caci_1623
symbol: dapF
gene_biotype: protein_coding
description:
  Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.


ensembl_gene_id: Caci_1624
symbol: hemH
gene_biotype: protein_coding
description:
  Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.


ensembl_gene_id: Caci_1627
symbol: Caci_1627
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sco:SCO5862 two-component regulator CutR.


ensembl_gene_id: Caci_1628
symbol: Caci_1628
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: sgr:SGR_1669 putative two-component system sensor kinase.


ensembl_gene_id: Caci_1631
symbol: Caci_1631
gene_biotype: protein_coding
description:
  SMART: helix-turn-helix domain protein; KEGG: fre:Franean1_1330 XRE family transcriptional regulator.


ensembl_gene_id: Caci_1637
symbol: dut
gene_biotype: protein_coding
description:
  Deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.


ensembl_gene_id: Caci_1641
symbol: Caci_1641
gene_biotype: protein_coding
description:
  PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: sgr:SGR_1657 putative potassium transporter.


ensembl_gene_id: Caci_1642
symbol: Caci_1642
gene_biotype: protein_coding
description:
  PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: sgr:SGR_1656 putative potassium transporter.


ensembl_gene_id: Caci_1643
symbol: Caci_1643
gene_biotype: protein_coding
description:
  TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: sco:SCO5901 RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.


ensembl_gene_id: Caci_1644
symbol: glyA
gene_biotype: protein_coding
description:
  Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.


ensembl_gene_id: Caci_1646
symbol: dinB
gene_biotype: protein_coding
description:
  DNA-directed DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.


ensembl_gene_id: Caci_1647
symbol: Caci_1647
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 12; Methyltransferase type 11; methyltransferase small; KEGG: sgr:SGR_5407 putative methyltransferase.


ensembl_gene_id: Caci_1649
symbol: Caci_1649
gene_biotype: protein_coding
description:
  PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: sgr:SGR_5409 hypothetical protein.


ensembl_gene_id: Caci_1651
symbol: Caci_1651
gene_biotype: protein_coding
description:
  PFAM: ATPase associated with various cellular activities AAA_3; AAA ATPase central domain protein; magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; KEGG: sgr:SGR_5411 putative regulatory protein.


ensembl_gene_id: Caci_1652
symbol: mraZ
gene_biotype: protein_coding
description:
  TIGRFAM: MraZ protein; PFAM: protein of unknown function UPF0040; KEGG: ace:Acel_1001 cell division protein MraZ; Belongs to the MraZ family.


ensembl_gene_id: Caci_1653
symbol: rsmH
gene_biotype: protein_coding
description:
  S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.


ensembl_gene_id: Caci_1655
symbol: Caci_1655
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; KEGG: EAP1; Enhanced Adherence to polystyrene; similar to S. pombe predicted GPI-anchored SPBPJ4664.02; similar to RBT1; 70-80 internal PATEST repeats, expanded relative to allelic CaP19.1401; identical to C. albicans putative -TRUNCATED-.


ensembl_gene_id: Caci_1656
symbol: Caci_1656
gene_biotype: protein_coding
description:
  Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: sma:SAV_6116 cell division protein FtsI/penicillin-binding protein.


ensembl_gene_id: Caci_1657
symbol: murE
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramyl-tripeptide synthetase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.


ensembl_gene_id: Caci_1658
symbol: murF
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanylligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.


ensembl_gene_id: Caci_1660
symbol: Caci_1660
gene_biotype: protein_coding
description:
  KEGG: tfu:Tfu_1010 glycerate kinase; TIGRFAM: glycerate kinase; PFAM: glycerate kinase; Belongs to the glycerate kinase type-1 family.


ensembl_gene_id: Caci_1661
symbol: nadA
gene_biotype: protein_coding
description:
  Quinolinate synthetase complex, A subunit; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.


ensembl_gene_id: Caci_1664
symbol: Caci_1664
gene_biotype: protein_coding
description:
  TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: sco:SCO2161 hypothetical protein; Belongs to the HesB/IscA family.


ensembl_gene_id: Caci_1667
symbol: Caci_1667
gene_biotype: protein_coding
description:
  TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; KEGG: sma:SAV_6047 cytochrome c oxidase subunit II.


ensembl_gene_id: Caci_1668
symbol: Caci_1668
gene_biotype: protein_coding
description:
  Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.


ensembl_gene_id: Caci_1669
symbol: Caci_1669
gene_biotype: protein_coding
description:
  Putative integral membrane protein; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.


ensembl_gene_id: Caci_1673
symbol: trpD
gene_biotype: protein_coding
description:
  Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).


ensembl_gene_id: Caci_1677
symbol: Caci_1677
gene_biotype: protein_coding
description:
  PFAM: cytochrome c oxidase subunit III; KEGG: sgr:SGR_5357 putative cytochrome c oxidase subunit III.


ensembl_gene_id: Caci_1681
symbol: Caci_1681
gene_biotype: protein_coding
description:
  PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicases; helicase domain protein; KEGG: sco:SCO4096 ATP-dependent RNA helicase.


ensembl_gene_id: Caci_1684
symbol: Caci_1684
gene_biotype: protein_coding
description:
  PFAM: homogentisate 12-dioxygenase; Cupin 2 conserved barrel domain protein; KEGG: sen:SACE_3944 homogentisate 1,2-dioxygenase.


ensembl_gene_id: Caci_1686
symbol: Caci_1686
gene_biotype: protein_coding
description:
  Fumarylacetoacetase; KEGG: sen:SACE_3942 putative fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: Domain of unknown function DUF1969; fumarylacetoacetate (FAA) hydrolase.


ensembl_gene_id: Caci_1692
symbol: Caci_1692
gene_biotype: protein_coding
description:
  SMART: LamG domain protein jellyroll fold domain protein; KEGG: sco:SCO4487 serine/threonine protein kinase.


ensembl_gene_id: Caci_1693
symbol: Caci_1693
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_5246 major facilitator superfamily permease.


ensembl_gene_id: Caci_1694
symbol: panB
gene_biotype: protein_coding
description:
  3-methyl-2-oxobutanoatehydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.


ensembl_gene_id: Caci_1698
symbol: Caci_1698
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; Male sterility domain; dTDP-4- dehydrorhamnose reductase; KEGG: sen:SACE_1769 hypothetical protein.


ensembl_gene_id: Caci_1700
symbol: Caci_1700
gene_biotype: protein_coding
description:
  TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: ace:Acel_0919 L-glutamine synthetase.


ensembl_gene_id: Caci_1703
symbol: Caci_1703
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: fra:Francci3_4153 zinc-binding alcohol dehydrogenase.


ensembl_gene_id: Caci_1707
symbol: Caci_1707
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: bja:blr4028 putative RNA polymerase; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Caci_1709
symbol: glnE
gene_biotype: protein_coding
description:
  Glutamate-ammonia ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transd [...]


ensembl_gene_id: Caci_1711
symbol: Caci_1711
gene_biotype: protein_coding
description:
  PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: sen:SACE_5312 TetR family transcriptional regulator.


ensembl_gene_id: Caci_1717
symbol: Caci_1717
gene_biotype: protein_coding
description:
  PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ace:Acel_1816 xylose isomerase domain- containing protein.


ensembl_gene_id: Caci_1718
symbol: Caci_1718
gene_biotype: protein_coding
description:
  PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: tpe:Tpen_1431 phosphotransferase domain- containing protein.


ensembl_gene_id: Caci_1719
symbol: Caci_1719
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ttj:TTHA0975 sugar ABC transporter, ATP- binding protein.


ensembl_gene_id: Caci_1720
symbol: Caci_1720
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsa:RSal33209_0424 sugar ABC transporter, permease component.


ensembl_gene_id: Caci_1721
symbol: Caci_1721
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gtn:GTNG_1822 putative integral membrane transport protein.


ensembl_gene_id: Caci_1722
symbol: Caci_1722
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: cmi:CMM_1262 putative sugar ABC transporter, substrate binding protein.


ensembl_gene_id: Caci_1723
symbol: Caci_1723
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: kra:Krad_4060 GntR family transcriptional regulator.


ensembl_gene_id: Caci_1724
symbol: Caci_1724
gene_biotype: protein_coding
description:
  PFAM: Myo-inositol catabolism IolB domain protein; KEGG: kra:Krad_4057 myo-inositol catabolism IolB domain-containing protein.


ensembl_gene_id: Caci_1727
symbol: Caci_1727
gene_biotype: protein_coding
description:
  PFAM: dienelactone hydrolase; BAAT/Acyl-CoA thioester hydrolase; KEGG: ace:Acel_1423 carboxymethylenebutenolidase.


ensembl_gene_id: Caci_1729
symbol: Caci_1729
gene_biotype: protein_coding
description:
  KEGG: sma:SAV_7451 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase.


ensembl_gene_id: Caci_1731
symbol: Caci_1731
gene_biotype: protein_coding
description:
  PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: nfa:nfa26120 putative oxidoreductase.


ensembl_gene_id: Caci_1733
symbol: Caci_1733
gene_biotype: protein_coding
description:
  Nitric-oxide synthase; Catalyzes the production of nitric oxide. Belongs to the NOS family. Bacterial NOS oxygenase subfamily.


ensembl_gene_id: Caci_1734
symbol: Caci_1734
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: nca:Noca_2873 sigma-70 region 4 domain- containing protein; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Caci_1739
symbol: Caci_1739
gene_biotype: protein_coding
description:
  Na+/H+ antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.


ensembl_gene_id: Caci_1744
symbol: Caci_1744
gene_biotype: protein_coding
description:
  TIGRFAM: phenylacetate-CoA oxygenase, PaaG subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: sma:SAV_4354 phenylacetate-CoA oxygenase subunit PaaA.


ensembl_gene_id: Caci_1745
symbol: Caci_1745
gene_biotype: protein_coding
description:
  TIGRFAM: phenylacetate-CoA oxygenase, PaaH subunit; PFAM: phenylacetic acid degradation B; KEGG: sma:SAV_4353 phenylacetate-CoA oxygenase subunit PaaB.


ensembl_gene_id: Caci_1746
symbol: Caci_1746
gene_biotype: protein_coding
description:
  TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: ace:Acel_1441 phenylacetate-CoA oxygenase, PaaI subunit.


ensembl_gene_id: Caci_1748
symbol: Caci_1748
gene_biotype: protein_coding
description:
  PFAM: ferredoxin; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: stp:Strop_4069 phenylacetate-CoA oxygenase/reductase, PaaK subunit.


ensembl_gene_id: Caci_1749
symbol: Caci_1749
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; globin; KEGG: sma:SAV_4276 flavohemoprotein.


ensembl_gene_id: Caci_1752
symbol: Caci_1752
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: fal:FRAAL0773 acyl-CoA dehydrogenase.


ensembl_gene_id: Caci_1754
symbol: psuG
gene_biotype: protein_coding
description:
  Indigoidine synthase A family protein; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family.


ensembl_gene_id: Caci_1757
symbol: Caci_1757
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO6047 ABC transporter ATP-binding protein.


ensembl_gene_id: Caci_1758
symbol: Caci_1758
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.


ensembl_gene_id: Caci_1760
symbol: Caci_1760
gene_biotype: protein_coding
description:
  PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: sma:SAV_2445 sporulation transcription factor.


ensembl_gene_id: Caci_1761
symbol: sigA
gene_biotype: protein_coding
description:
  RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.


ensembl_gene_id: Caci_1763
symbol: Caci_1763
gene_biotype: protein_coding
description:
  KEGG: sma:SAV_2442 DNA topoisomerase IV subunit B; PFAM: DNA gyrase subunit B domain protein; ATP- binding region ATPase domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein.


ensembl_gene_id: Caci_1768
symbol: Caci_1768
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sgr:SGR_4857 putative ABC transporter ATP- binding protein.


ensembl_gene_id: Caci_1769
symbol: Caci_1769
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sgr:SGR_1662 putative ABC transporter ATP- binding protein.


ensembl_gene_id: Caci_1770
symbol: Caci_1770
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sco:SCO2734 LysR family transcriptional regulator.


ensembl_gene_id: Caci_1772
symbol: Caci_1772
gene_biotype: protein_coding
description:
  KEGG: sgr:SGR_1689 putative A subunit of topoisomerase IV; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; SMART: DNA gyrase/topoisomerase IV subunit A.


ensembl_gene_id: Caci_1775
symbol: Caci_1775
gene_biotype: protein_coding
description:
  PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; PglZ domain protein; KEGG: sco:SCO5844 hypothetical protein.


ensembl_gene_id: Caci_1776
symbol: Caci_1776
gene_biotype: protein_coding
description:
  PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: sgr:SGR_1678 putative thiosulfate sulfurtransferase.


ensembl_gene_id: Caci_1778
symbol: Caci_1778
gene_biotype: protein_coding
description:
  Dyp-type peroxidase family; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family.


ensembl_gene_id: Caci_1782
symbol: Caci_1782
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function UPF0126; KEGG: ank:AnaeK_3290 protein of unknown function UPF0126.


ensembl_gene_id: Caci_1790
symbol: dxs
gene_biotype: protein_coding
description:
  Deoxyxylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.


ensembl_gene_id: Caci_1797
symbol: Caci_1797
gene_biotype: protein_coding
description:
  Glutamate--putrescine ligase; PFAM: glutamine synthetase catalytic region; KEGG: rxy:Rxyl_3196 L-glutamine synthetase.


ensembl_gene_id: Caci_1799
symbol: Caci_1799
gene_biotype: protein_coding
description:
  PFAM: Aldehyde Dehydrogenase; KEGG: sen:SACE_5353 aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: Caci_1800
symbol: Caci_1800
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sma:SAV_6727 short chain dehydrogenase.


ensembl_gene_id: Caci_1805
symbol: Caci_1805
gene_biotype: protein_coding
description:
  Putative cell wall-binding domain-like protein; KEGG: ace:Acel_1461 cell wall binding repeat 2- containing protein.


ensembl_gene_id: Caci_1806
symbol: Caci_1806
gene_biotype: protein_coding
description:
  TIGRFAM: 2,4-diaminobutyrate 4-transaminase; PFAM: aminotransferase class-III; KEGG: fra:Francci3_4054 aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Caci_1814
symbol: lexA
gene_biotype: protein_coding
description:
  SOS-response transcriptional repressor, LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.


ensembl_gene_id: Caci_1815
symbol: nrdR
gene_biotype: protein_coding
description:
  ATP-cone domain protein; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.


ensembl_gene_id: Caci_1817
symbol: Caci_1817
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.


ensembl_gene_id: Caci_1819
symbol: Caci_1819
gene_biotype: protein_coding
description:
  PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: sco:SCO3204 hypothetical protein.


ensembl_gene_id: Caci_1820
symbol: ribA
gene_biotype: protein_coding
description:
  GTP cyclohydrolase II; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family.


ensembl_gene_id: Caci_1821
symbol: Caci_1821
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: nfa:nfa43350 putative transcriptional regulator.


ensembl_gene_id: Caci_1822
symbol: Caci_1822
gene_biotype: protein_coding
description:
  Putative transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: stp:Strop_0872 regulatory protein, TetR.


ensembl_gene_id: Caci_1823
symbol: Caci_1823
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; KEGG: stp:Strop_0873 NAD-dependent epimerase/dehydratase.


ensembl_gene_id: Caci_1828
symbol: Caci_1828
gene_biotype: protein_coding
description:
  PFAM: domain of unknown function DUF1731; NAD- dependent epimerase/dehydratase; KEGG: sgr:SGR_5323 putative NAD dependent epimerase/dehydratase family protein.


ensembl_gene_id: Caci_1829
symbol: Caci_1829
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_1638 dihydrolipoamide succinyltransferase; TIGRFAM: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain- containing protein; E3 binding domain protein.


ensembl_gene_id: Caci_1830
symbol: Caci_1830
gene_biotype: protein_coding
description:
  TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; glucose-inhibited division protein A; FAD dependent oxidoreductase; KEGG: sgr:SGR_5330 putative dihydrolipoamide dehydrogenase.


ensembl_gene_id: Caci_1834
symbol: pepA
gene_biotype: protein_coding
description:
  Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.


ensembl_gene_id: Caci_1835
symbol: Caci_1835
gene_biotype: protein_coding
description:
  TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: nca:Noca_2307 glycine cleavage system aminomethyltransferase T.


ensembl_gene_id: Caci_1839
symbol: cobS
gene_biotype: protein_coding
description:
  Cobalamin-5-phosphate synthase CobS; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.


ensembl_gene_id: Caci_1840
symbol: Caci_1840
gene_biotype: protein_coding
description:
  PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: sma:SAV_6030 nicotinate-nucleotide- dimethylbenzimidazole phosphoribosyltransferase.


ensembl_gene_id: Caci_1841
symbol: Caci_1841
gene_biotype: protein_coding
description:
  PFAM: cobalbumin biosynthesis protein; KEGG: sco:SCO2173 adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase.


ensembl_gene_id: Caci_1851
symbol: Caci_1851
gene_biotype: protein_coding
description:
  TIGRFAM: YidE/YbjL duplication; PFAM: YidE/YbjL duplication domain protein; KEGG: sgr:SGR_4734 putative transport protein.


ensembl_gene_id: Caci_1855
symbol: Caci_1855
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: gme:Gmet_2113 pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein.


ensembl_gene_id: Caci_1856
symbol: Caci_1856
gene_biotype: protein_coding
description:
  PFAM: 4'-phosphopantetheinyl transferase; KEGG: sen:SACE_4001 phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily.


ensembl_gene_id: Caci_1869
symbol: Caci_1869
gene_biotype: protein_coding
description:
  Transcriptional regulator, PucR family; PFAM: purine catabolism PurC domain protein; KEGG: sen:SACE_4884 transcriptional regulator.


ensembl_gene_id: Caci_1870
symbol: Caci_1870
gene_biotype: protein_coding
description:
  TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: rha:RHA1_ro03492 xanthine/uracil permease.


ensembl_gene_id: Caci_1871
symbol: Caci_1871
gene_biotype: protein_coding
description:
  PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: rha:RHA1_ro03491 dehydrogenase.


ensembl_gene_id: Caci_1872
symbol: Caci_1872
gene_biotype: protein_coding
description:
  PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: nca:Noca_1490 2Fe-2S iron-sulfur cluster binding domain-containing protein.


ensembl_gene_id: Caci_1873
symbol: Caci_1873
gene_biotype: protein_coding
description:
  PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: nca:Noca_1491 xanthine dehydrogenase, molybdenum binding subunit apoprotein.


ensembl_gene_id: Caci_1874
symbol: Caci_1874
gene_biotype: protein_coding
description:
  PFAM: carbon monoxide dehydrogenase subunit G; KEGG: rha:RHA1_ro03488 carbon monoxide dehydrogenase protein G.


ensembl_gene_id: Caci_1875
symbol: Caci_1875
gene_biotype: protein_coding
description:
  PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: aoe:Clos_0875 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.


ensembl_gene_id: Caci_1876
symbol: Caci_1876
gene_biotype: protein_coding
description:
  5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: nca:Noca_1496 5-oxoprolinase (ATP- hydrolyzing).


ensembl_gene_id: Caci_1878
symbol: Caci_1878
gene_biotype: protein_coding
description:
  Carbamate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: nca:Noca_1504 carbamate kinase; Belongs to the carbamate kinase family.


ensembl_gene_id: Caci_1879
symbol: Caci_1879
gene_biotype: protein_coding
description:
  Ring-opening amidohydrolase; Responsible for the hydrolysis of barbituric acid (2,4,6- trihydroxy-1,3-pyrimidine), an intermediate in the oxidative catabolism of pyrimidines. Catalyzes the hydrolytic opening of the pyrimidine ring of barbituric acid to yield ureidomalonic acid; Belongs to the cyclic amide hydrolase (CyAH) family.


ensembl_gene_id: Caci_1883
symbol: Caci_1883
gene_biotype: protein_coding
description:
  PFAM: Platelet-activating factor acetylhydrolase plasma/intracellular isoform II; KEGG: sgr:SGR_4210 putative lipase.


ensembl_gene_id: Caci_1891
symbol: Caci_1891
gene_biotype: protein_coding
description:
  PFAM: Lytic transglycosylase catalytic; Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: sgr:SGR_478 hypothetical protein.


ensembl_gene_id: Caci_1892
symbol: Caci_1892
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: sma:SAV_2033 LuxR family transcriptional regulator.


ensembl_gene_id: Caci_1895
symbol: Caci_1895
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sen:SACE_0789 ABC-type transporter, ATPase component.


ensembl_gene_id: Caci_1896
symbol: Caci_1896
gene_biotype: protein_coding
description:
  PFAM: histidine kinase dimerisation and phosphoacceptor region; KEGG: rsa:RSal33209_0379 two component system histidine kinase.


ensembl_gene_id: Caci_1897
symbol: Caci_1897
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sco:SCO4072 LuxR family two component system response regulator.


ensembl_gene_id: Caci_1900
symbol: Caci_1900
gene_biotype: protein_coding
description:
  PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: kra:Krad_0218 cold-shock DNA-binding domain- containing protein.


ensembl_gene_id: Caci_1901
symbol: rbpA
gene_biotype: protein_coding
description:
  Electron transport protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.


ensembl_gene_id: Caci_1905
symbol: Caci_1905
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: sco:SCO3600 hypothetical protein.


ensembl_gene_id: Caci_1912
symbol: Caci_1912
gene_biotype: protein_coding
description:
  TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: mab:MAB_0560 hypothetical protein.


ensembl_gene_id: Caci_1914
symbol: Caci_1914
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV_7405 ABC transporter ATP-binding protein.


ensembl_gene_id: Caci_1916
symbol: Caci_1916
gene_biotype: protein_coding
description:
  PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: sgr:SGR_5300 putative two-component system sensor kinase.


ensembl_gene_id: Caci_1917
symbol: Caci_1917
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver; KEGG: fre:Franean1_4332 two component LuxR family transcriptional regulator.


ensembl_gene_id: Caci_1918
symbol: Caci_1918
gene_biotype: protein_coding
description:
  Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: tfu:Tfu_3055 anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family.


ensembl_gene_id: Caci_1919
symbol: Caci_1919
gene_biotype: protein_coding
description:
  Putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: kra:Krad_4080 protein serine phosphatase with GAF(s) sensor(s).


ensembl_gene_id: Caci_1921
symbol: Caci_1921
gene_biotype: protein_coding
description:
  TIGRFAM: RNA polymerase sigma-70 factor, sigma- B/F/G subfamily; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 3 domain protein; sigma- 70 region 4 domain protein; KEGG: fra:Francci3_3755 sigma 28 subunit.


ensembl_gene_id: Caci_1924
symbol: Caci_1924
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: sgr:SGR_1773 putative two-component system sensor kinase.


ensembl_gene_id: Caci_1927
symbol: Caci_1927
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sma:SAV_4822 serine/threonine protein kinase.


ensembl_gene_id: Caci_1929
symbol: Caci_1929
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: fre:Franean1_4960 MarR family transcriptional regulator.


ensembl_gene_id: Caci_1932
symbol: Caci_1932
gene_biotype: protein_coding
description:
  PFAM: Endonuclease/exonuclease/phosphatase; KEGG: sgr:SGR_1342 putative endonuclease/exonuclease/phosphatase family protein.


ensembl_gene_id: Caci_1933
symbol: Caci_1933
gene_biotype: protein_coding
description:
  PFAM: guanine-specific ribonuclease N1 and T1; KEGG: nfa:nfa9320 putative guanyl-specific ribonuclease.


ensembl_gene_id: Caci_1938
symbol: Caci_1938
gene_biotype: protein_coding
description:
  PFAM: thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding; thiamine pyrophosphate protein TPP binding domain protein; KEGG: aau:AAur_0244 putative acetolactate synthase, large subunit; Belongs to the TPP enzyme family.


ensembl_gene_id: Caci_1939
symbol: Caci_1939
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sgr:SGR_1500 putative ABC transporter permease protein.


ensembl_gene_id: Caci_1940
symbol: Caci_1940
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV_2250 ABC transporter permease protein.


ensembl_gene_id: Caci_1941
symbol: Caci_1941
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: sma:SAV_2251 ABC transporter solute-binding protein.


ensembl_gene_id: Caci_1943
symbol: Caci_1943
gene_biotype: protein_coding
description:
  KEGG: sma:SAV_7422 LacI family transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI.


ensembl_gene_id: Caci_1946
symbol: Caci_1946
gene_biotype: protein_coding
description:
  PFAM: aminotransferase class I and II; KEGG: sgr:SGR_4732 putative aspartate/tyrosine/aromatic aminotransferase.


ensembl_gene_id: Caci_1949
symbol: Caci_1949
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: CH211-159J13.1; similar to Ras association (RalGDS/AF-6) and pleckstrin homology domains 1.


ensembl_gene_id: Caci_1951
symbol: Caci_1951
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sma:SAV_6039 two-component system response regulator.


ensembl_gene_id: Caci_1952
symbol: Caci_1952
gene_biotype: protein_coding
description:
  PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: sco:SCO2166 two component sensor kinase.


ensembl_gene_id: Caci_1954
symbol: Caci_1954
gene_biotype: protein_coding
description:
  TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; KEGG: sgr:SGR_3642 putative hydrolase.


ensembl_gene_id: Caci_1955
symbol: Caci_1955
gene_biotype: protein_coding
description:
  PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: sen:SACE_4841 mandelate racemase/muconate lactonizing enzyme.


ensembl_gene_id: Caci_1959
symbol: Caci_1959
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: fre:Franean1_1479 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Caci_1961
symbol: nagB
gene_biotype: protein_coding
description:
  Glucosamine-6-phosphate isomerase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion; Belongs to the glucosamine/galactosamine-6-phosphate isomerase family. NagB subfamily.


ensembl_gene_id: Caci_1963
symbol: Caci_1963
gene_biotype: protein_coding
description:
  PFAM: NmrA family protein; NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: fre:Franean1_6618 NmrA family protein.


ensembl_gene_id: Caci_1964
symbol: Caci_1964
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: fre:Franean1_6619 MarR family transcriptional regulator.


ensembl_gene_id: Caci_1967
symbol: Caci_1967
gene_biotype: protein_coding
description:
  PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: bpd:BURPS668_3032 putative lipoprotein.


ensembl_gene_id: Caci_1970
symbol: Caci_1970
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: sco:SCO0307 DNA-binding protein.


ensembl_gene_id: Caci_1972
symbol: Caci_1972
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: nfa:nfa56490 putative transcriptional regulator.


ensembl_gene_id: Caci_1974
symbol: Caci_1974
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: cvi:CV_0218 transcriptional activator.


ensembl_gene_id: Caci_1975
symbol: Caci_1975
gene_biotype: protein_coding
description:
  TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: msm:MSMEG_6780 phenazine biosynthesis protein PhzF.


ensembl_gene_id: Caci_1976
symbol: Caci_1976
gene_biotype: protein_coding
description:
  PFAM: ornithine cyclodeaminase/mu-crystallin; Shikimate/quinate 5-dehydrogenase; KEGG: rec:RHECIAT_PC0000375 ornithine cyclodeaminase protein.


ensembl_gene_id: Caci_1977
symbol: Caci_1977
gene_biotype: protein_coding
description:
  PFAM: FAD linked oxidase domain protein; D- arabinono-14-lactone oxidase; KEGG: ace:Acel_0723 FAD linked oxidase domain- containing protein.


ensembl_gene_id: Caci_1978
symbol: Caci_1978
gene_biotype: protein_coding
description:
  Putative signal transduction protein with CBS domains; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: sma:SAV_6263 hypothetical protein.


ensembl_gene_id: Caci_1980
symbol: Caci_1980
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF574; Methyltransferase type 12; KEGG: fra:Francci3_1003 hypothetical protein.


ensembl_gene_id: Caci_1981
symbol: Caci_1981
gene_biotype: protein_coding
description:
  Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; TPR repeat- containing protein; NB-ARC domain protein; transcriptional regulator domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sgr:SGR_2192 putative AfsR-like transcriptional regulator.


ensembl_gene_id: Caci_1982
symbol: Caci_1982
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: vfi:VF_2037 Cro/Cl family transcriptional regulator.


ensembl_gene_id: Caci_1985
symbol: Caci_1985
gene_biotype: protein_coding
description:
  PFAM: NB-ARC domain protein; SMART: AAA ATPase; Tetratricopeptide domain protein; KEGG: sen:SACE_0488 SARP family transcriptional regulator.


ensembl_gene_id: Caci_1987
symbol: Caci_1987
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; aminoglycoside phosphotransferase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sco:SCO4481 serine/threonine protein kinase (fragment).


ensembl_gene_id: Caci_1990
symbol: Caci_1990
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: saq:Sare_0800 ECF subfamily RNA polymerase sigma-24 factor.


ensembl_gene_id: Caci_1993
symbol: Caci_1993
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: sma:SAV_3779 MerR family transcriptional regulator.


ensembl_gene_id: Caci_1994
symbol: Caci_1994
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 31; Carbohydrate binding family 6; Ricin B lectin; SMART: Ricin B lectin; KEGG: aba:Acid345_1956 glycoside hydrolase, family 31.


ensembl_gene_id: Caci_1995
symbol: Caci_1995
gene_biotype: protein_coding
description:
  PFAM: Aldehyde Dehydrogenase; KEGG: nca:Noca_4004 succinic semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: Caci_1998
symbol: Caci_1998
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: nca:Noca_3873 GntR family transcriptional regulator.


ensembl_gene_id: Caci_2007
symbol: Caci_2007
gene_biotype: protein_coding
description:
  TIGRFAM: benzoyl-CoA oxygenase, B subunit; KEGG: bph:Bphy_1539 benzoyl-CoA oxygenase component B (BoxB).


ensembl_gene_id: Caci_2008
symbol: Caci_2008
gene_biotype: protein_coding
description:
  TIGRFAM: benzoyl-CoA-dihydrodiol lyase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bpt:Bpet3570 enoyl-CoA hydratase.


ensembl_gene_id: Caci_2009
symbol: Caci_2009
gene_biotype: protein_coding
description:
  Transcriptional regulator, PaaX family; PFAM: PaaX domain protein domain; PaaX domain protein; KEGG: sth:STH211 transcriptional regulatory protein, repressor-type.


ensembl_gene_id: Caci_2013
symbol: Caci_2013
gene_biotype: protein_coding
description:
  Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; SMART: regulatory protein LacI; KEGG: sgr:SGR_6529 LacI family transcriptional regulator.


ensembl_gene_id: Caci_2014
symbol: Caci_2014
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: cms:CMS_1015 putative extracellular solute- binding protein.


ensembl_gene_id: Caci_2015
symbol: Caci_2015
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sen:SACE_7278 putative integral membrane transport protein.


ensembl_gene_id: Caci_2016
symbol: Caci_2016
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sen:SACE_7277 ABC transporter, permease protein.


ensembl_gene_id: Caci_2019
symbol: Caci_2019
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: xac:XAC4233 bleomycin resistance protein.


ensembl_gene_id: Caci_2020
symbol: Caci_2020
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: nca:Noca_1864 ATPase domain-containing protein.


ensembl_gene_id: Caci_2021
symbol: Caci_2021
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: fal:FRAAL5299 two-component regulatory system response regulator.


ensembl_gene_id: Caci_2023
symbol: Caci_2023
gene_biotype: protein_coding
description:
  Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: stp:Strop_4248 regulatory protein, ArsR.


ensembl_gene_id: Caci_2025
symbol: Caci_2025
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 12; Methyltransferase type 11; methyltransferase small; KEGG: ace:Acel_0489 methyltransferase type 12.


ensembl_gene_id: Caci_2028
symbol: Caci_2028
gene_biotype: protein_coding
description:
  Beta-galactosidase; PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein; KEGG: sen:SACE_5154 putative beta-galactosidase.


ensembl_gene_id: Caci_2029
symbol: Caci_2029
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV_7265 L-arabinose ABC transport permease protein.


ensembl_gene_id: Caci_2030
symbol: Caci_2030
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC3300 sugar ABC transporter permease.


ensembl_gene_id: Caci_2031
symbol: Caci_2031
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: hau:Haur_3641 extracellular solute-binding protein.


ensembl_gene_id: Caci_2032
symbol: Caci_2032
gene_biotype: protein_coding
description:
  Glycine cleavage system P-protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein.


ensembl_gene_id: Caci_2035
symbol: Caci_2035
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: vei:Veis_2457 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Caci_2036
symbol: Caci_2036
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; KEGG: tte:TTE2558 transcriptional regulator.


ensembl_gene_id: Caci_2037
symbol: Caci_2037
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: nfa:nfa11730 putative transcriptional regulator.


ensembl_gene_id: Caci_2038
symbol: clpP
gene_biotype: protein_coding
description:
  Endopeptidase Clp; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.


ensembl_gene_id: Caci_2039
symbol: Caci_2039
gene_biotype: protein_coding
description:
  PFAM: peptidase S14 ClpP; KEGG: nfa:nfa11710 putative Clp protease proteolytic subunit; Belongs to the peptidase S14 family.


ensembl_gene_id: Caci_2041
symbol: Caci_2041
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family.


ensembl_gene_id: Caci_2042
symbol: Caci_2042
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.


ensembl_gene_id: Caci_2043
symbol: Caci_2043
gene_biotype: protein_coding
description:
  PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: fal:FRAAL1619 hypothetical protein.


ensembl_gene_id: Caci_2045
symbol: Caci_2045
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: rxy:Rxyl_2398 alcohol dehydrogenase, zinc- binding protein.


ensembl_gene_id: Caci_2046
symbol: Caci_2046
gene_biotype: protein_coding
description:
  PFAM: NmrA family protein; NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: sma:SAV_4781 hypothetical protein.


ensembl_gene_id: Caci_2052
symbol: Caci_2052
gene_biotype: protein_coding
description:
  Plasmid maintenance system antidote protein, XRE family; SMART: helix-turn-helix domain protein; KEGG: sgr:SGR_4171 hypothetical protein.


ensembl_gene_id: Caci_2054
symbol: Caci_2054
gene_biotype: protein_coding
description:
  PFAM: Ricin B lectin; SMART: Ricin B lectin; KEGG: nfa:nfa31920 putative serine/threonine protein kinase.


ensembl_gene_id: Caci_2056
symbol: Caci_2056
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF853 NPT hydrolase putative; KEGG: sma:SAV_4175 hypothetical protein.


ensembl_gene_id: Caci_2058
symbol: Caci_2058
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sco:SCO3914 transcriptional regulator.


ensembl_gene_id: Caci_2059
symbol: Caci_2059
gene_biotype: protein_coding
description:
  TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bcm:Bcenmc03_5842 major facilitator transporter.


ensembl_gene_id: Caci_2060
symbol: Caci_2060
gene_biotype: protein_coding
description:
  PFAM: copper resistance D domain protein; KEGG: cak:Caul_2346 copper resistance D domain- containing protein.


ensembl_gene_id: Caci_2061
symbol: Caci_2061
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: stp:Strop_4499 sigma-70, region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Caci_2064
symbol: Caci_2064
gene_biotype: protein_coding
description:
  KEGG: fal:FRAAL2549 antibiotic resistance ATP- binding protein; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Caci_2066
symbol: Caci_2066
gene_biotype: protein_coding
description:
  Transcriptional regulator, winged helix family; PFAM: transcriptional activator domain; transcriptional regulator domain protein; KEGG: nfa:nfa34460 putative transcriptional regulator.


ensembl_gene_id: Caci_2067
symbol: Caci_2067
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sma:SAV_373 LysR family transcriptional regulator.


ensembl_gene_id: Caci_2074
symbol: Caci_2074
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 2; KEGG: tfu:Tfu_2523 fused dolichol-phosphate mannosyltransferase/uncharacterized protein.


ensembl_gene_id: Caci_2075
symbol: Caci_2075
gene_biotype: protein_coding
description:
  PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: ter:Tery_3996 tetratricopeptide TPR_2.


ensembl_gene_id: Caci_2076
symbol: Caci_2076
gene_biotype: protein_coding
description:
  PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: mmi:MMAR_1535 ATPase; Belongs to the AAA ATPase family.


ensembl_gene_id: Caci_2077
symbol: Caci_2077
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sma:SAV_1163 LysR family transcriptional regulator.


ensembl_gene_id: Caci_2085
symbol: Caci_2085
gene_biotype: protein_coding
description:
  PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: sco:SCO7304 putative FAD-binding dehydrogenase.


ensembl_gene_id: Caci_2088
symbol: Caci_2088
gene_biotype: protein_coding
description:
  PFAM: WD40 domain protein beta Propeller; KEGG: ace:Acel_1461 cell wall binding repeat 2- containing protein.


ensembl_gene_id: Caci_2089
symbol: Caci_2089
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Tetratricopeptide TPR_4; SMART: regulatory protein LuxR; KEGG: fal:FRAAL0335 LuxR family transcriptional regulator.


ensembl_gene_id: Caci_2093
symbol: Caci_2093
gene_biotype: protein_coding
description:
  PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: sco:SCO7109 oxidoreductase.


ensembl_gene_id: Caci_2094
symbol: Caci_2094
gene_biotype: protein_coding
description:
  PFAM: NmrA family protein; dTDP-4-dehydrorhamnose reductase; KEGG: fre:Franean1_3574 NmrA family protein.


ensembl_gene_id: Caci_2097
symbol: Caci_2097
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: fre:Franean1_3569 ECF subfamily RNA polymerase sigma-24 factor.


ensembl_gene_id: Caci_2100
symbol: Caci_2100
gene_biotype: protein_coding
description:
  TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: sgr:SGR_4488 putative transcriptional regulator.


ensembl_gene_id: Caci_2104
symbol: Caci_2104
gene_biotype: protein_coding
description:
  PFAM: chalcone and stilbene synthase domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: mgi:Mflv_3991 chalcone/stilbene synthase domain-containing protein.


ensembl_gene_id: Caci_2106
symbol: Caci_2106
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 12; O- methyltransferase family 2; Methyltransferase type 11; KEGG: mgi:Mflv_3993 methyltransferase type 12.


ensembl_gene_id: Caci_2107
symbol: Caci_2107
gene_biotype: protein_coding
description:
  Transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; KEGG: sen:SACE_0763 DeoR family transcriptional regulator.


ensembl_gene_id: Caci_2108
symbol: Caci_2108
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: saq:Sare_0747 extracellular solute-binding protein.


ensembl_gene_id: Caci_2109
symbol: Caci_2109
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sgr:SGR_5276 putative maltose ABC transporter permease protein.


ensembl_gene_id: Caci_2110
symbol: Caci_2110
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO2229 maltose permease.


ensembl_gene_id: Caci_2111
symbol: Caci_2111
gene_biotype: protein_coding
description:
  PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: sgr:SGR_5278 putative alpha-glucosidase.


ensembl_gene_id: Caci_2112
symbol: Caci_2112
gene_biotype: protein_coding
description:
  KEGG: sgr:SGR_5274 LacI family transcriptional regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI.


ensembl_gene_id: Caci_2114
symbol: Caci_2114
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: fal:FRAAL4427 putative short-chain oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Caci_2121
symbol: Caci_2121
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sgr:SGR_4696 putative ABC transporter permease protein.


ensembl_gene_id: Caci_2122
symbol: Caci_2122
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sgr:SGR_4695 putative ABC transporter permease protein.


ensembl_gene_id: Caci_2123
symbol: Caci_2123
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sgr:SGR_4694 putative ABC transporter ATP- binding protein; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Caci_2124
symbol: Caci_2124
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: sgr:SGR_4697 putative ABC transporter substrate-binding protein.


ensembl_gene_id: Caci_2125
symbol: Caci_2125
gene_biotype: protein_coding
description:
  PFAM: Aldehyde Dehydrogenase; KEGG: cau:Caur_1767 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: Caci_2127
symbol: Caci_2127
gene_biotype: protein_coding
description:
  Glutaconate CoA-transferase; PFAM: coenzyme A transferase; KEGG: sen:SACE_3515 3-oxoadipate:succinyl-CoA transferase, B subunit.


ensembl_gene_id: Caci_2130
symbol: Caci_2130
gene_biotype: protein_coding
description:
  PFAM: NUDIX hydrolase; KEGG: fre:Franean1_7147 NUDIX hydrolase; Belongs to the Nudix hydrolase family.


ensembl_gene_id: Caci_2132
symbol: Caci_2132
gene_biotype: protein_coding
description:
  PFAM: Aldehyde Dehydrogenase; KEGG: sma:SAV_5852 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: Caci_2134
symbol: Caci_2134
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family with acetyltransferase activity; PFAM: GCN5-related N-acetyltransferase; regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bja:bll2512 transcriptional regulatory protein.


ensembl_gene_id: Caci_2140
symbol: Caci_2140
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sgr:SGR_2750 putative serine/threonine protein kinase.


ensembl_gene_id: Caci_2142
symbol: Caci_2142
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: sen:SACE_6399 protein of unknown function DUF899,thioredoxin-like.


ensembl_gene_id: Caci_2146
symbol: Caci_2146
gene_biotype: protein_coding
description:
  Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: rha:RHA1_ro03838 sigma factor, includes region 2.


ensembl_gene_id: Caci_2148
symbol: Caci_2148
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: sgr:SGR_5203 putative acyl-CoA dehydrogenase.


ensembl_gene_id: Caci_2149
symbol: Caci_2149
gene_biotype: protein_coding
description:
  PFAM: Thiolase; KEGG: sgr:SGR_5204 putative lipid-transfer protein; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Caci_2150
symbol: Caci_2150
gene_biotype: protein_coding
description:
  PFAM: ROK family protein; regulatory protein MarR; KEGG: sgr:SGR_1499 ROK family transcriptional regulator.


ensembl_gene_id: Caci_2151
symbol: Caci_2151
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: sma:SAV_5098 sugar ABC transporter solute- binding protein.


ensembl_gene_id: Caci_2152
symbol: Caci_2152
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV_5097 sugar ABC transporter permease protein.


ensembl_gene_id: Caci_2153
symbol: Caci_2153
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO2980 integral membrane transport protein.


ensembl_gene_id: Caci_2154
symbol: Caci_2154
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ace:Acel_0558 ABC transporter related; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Caci_2159
symbol: Caci_2159
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: rha:RHA1_ro03591 glutamate binding protein solute binding protein family.


ensembl_gene_id: Caci_2161
symbol: Caci_2161
gene_biotype: protein_coding
description:
  PFAM: tyrosine protein kinase; NUDIX hydrolase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sma:SAV_5375 serine/threonine protein kinase.


ensembl_gene_id: Caci_2162
symbol: Caci_2162
gene_biotype: protein_coding
description:
  SMART: protein phosphatase 2C domain protein; KEGG: sma:SAV_5374 magnesium or manganese-dependent protein phosphatase.


ensembl_gene_id: Caci_2163
symbol: Caci_2163
gene_biotype: protein_coding
description:
  PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: sgr:SGR_4863 hypothetical protein.


ensembl_gene_id: Caci_2164
symbol: Caci_2164
gene_biotype: protein_coding
description:
  PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: sgr:SGR_4862 hypothetical protein.


ensembl_gene_id: Caci_2168
symbol: Caci_2168
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: sen:SACE_5167 AraC family transcriptional regulator.


ensembl_gene_id: Caci_2170
symbol: Caci_2170
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: sma:SAV_3939 ABC transporter solute-binding protein.


ensembl_gene_id: Caci_2171
symbol: Caci_2171
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_B0419 ABC sugar transporter, inner membrane subunit.


ensembl_gene_id: Caci_2172
symbol: Caci_2172
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nca:Noca_1418 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Caci_2175
symbol: Caci_2175
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: mav:MAV_1336 acyl-CoA dehydrogenase, C-domain protein.


ensembl_gene_id: Caci_2179
symbol: Caci_2179
gene_biotype: protein_coding
description:
  PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: mab:MAB_3296 hypothetical protein.


ensembl_gene_id: Caci_2181
symbol: Caci_2181
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: bid:Bind_2504 ECF subfamily RNA polymerase sigma-24 factor.


ensembl_gene_id: Caci_2182
symbol: Caci_2182
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: saq:Sare_2205 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Caci_2186
symbol: Caci_2186
gene_biotype: protein_coding
description:
  Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: saq:Sare_0033 propionyl-CoA carboxylase.


ensembl_gene_id: Caci_2187
symbol: Caci_2187
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: sco:SCO2779 acyl-CoA dehydrogenase.


ensembl_gene_id: Caci_2190
symbol: Caci_2190
gene_biotype: protein_coding
description:
  PFAM: NADPH-dependent FMN reductase; NAD(P)H dehydrogenase (quinone); KEGG: dar:Daro_2073 NAD(P)H dehydrogenase (quinone):NADPH-dependent FMN reductase.


ensembl_gene_id: Caci_2192
symbol: Caci_2192
gene_biotype: protein_coding
description:
  TIGRFAM: acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase; KEGG: sco:SCO1393 acetoacetyl-CoA synthetase.


ensembl_gene_id: Caci_2194
symbol: Caci_2194
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: saq:Sare_3248 HAD family hydrolase.


ensembl_gene_id: Caci_2199
symbol: Caci_2199
gene_biotype: protein_coding
description:
  PFAM: FAD dependent oxidoreductase; glucose- methanol-choline oxidoreductase; KEGG: tfu:Tfu_2332 putative cholesterol oxidase.


ensembl_gene_id: Caci_2202
symbol: Caci_2202
gene_biotype: protein_coding
description:
  IMP dehydrogenase family protein; KEGG: sma:SAV_6884 inositol-5-monophosphate dehydrogenase; TIGRFAM: IMP dehydrogenase family protein; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein; SMART: CBS domain containing protein.


ensembl_gene_id: Caci_2208
symbol: Caci_2208
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF475; Integral membrane protein TerC; KEGG: sgr:SGR_6192 putative integral membrane protein.


ensembl_gene_id: Caci_2210
symbol: Caci_2210
gene_biotype: protein_coding
description:
  Putative signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: sco:SCO3724 hypothetical protein.


ensembl_gene_id: Caci_2211
symbol: Caci_2211
gene_biotype: protein_coding
description:
  FHA modulated ABC efflux pump with fused ATPase and integral membrane subunits; PFAM: ABC transporter related; ABC-2 type transporter; Forkhead-associated protein; SMART: AAA ATPase; Forkhead-associated protein; KEGG: fra:Francci3_0947 FHA domain-containing protein.


ensembl_gene_id: Caci_2213
symbol: Caci_2213
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_6203 ATP-dependent helicase; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase-associated domain protein; protein of unknown function DUF1605; helicase domain protein; SMART: DEAD-like helicases; helicase domain protein; AAA ATPase.


ensembl_gene_id: Caci_2215
symbol: Caci_2215
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMC domain protein; SMART: AAA ATPase; KEGG: sen:SACE_7004 ABC transporter, ATP-binding component.


ensembl_gene_id: Caci_2220
symbol: Caci_2220
gene_biotype: protein_coding
description:
  PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: peptidase S1 and S6 chymotrypsin/Hap; KEGG: sma:SAV_2034 trypsin-like protease.


ensembl_gene_id: Caci_2223
symbol: Caci_2223
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_4006 major facilitator superfamily permease.


ensembl_gene_id: Caci_2226
symbol: Caci_2226
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: sen:SACE_3243 acyl-CoA dehydrogenase.


ensembl_gene_id: Caci_2227
symbol: Caci_2227
gene_biotype: protein_coding
description:
  PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: fra:Francci3_3863 peptidase S1 and S6, chymotrypsin/Hap.


ensembl_gene_id: Caci_2228
symbol: Caci_2228
gene_biotype: protein_coding
description:
  PFAM: band 7 protein; SMART: band 7 protein; KEGG: sma:SAV_2212 membrane protease subunit stomatin/prohibitin-like protein.


ensembl_gene_id: Caci_2230
symbol: thrS
gene_biotype: protein_coding
description:
  TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; KEGG: sma:SAV_6822 threonyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: Caci_2231
symbol: nfi
gene_biotype: protein_coding
description:
  Deoxyribonuclease V; DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA.


ensembl_gene_id: Caci_2232
symbol: Caci_2232
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: kra:Krad_2593 MarR family transcriptional regulator.


ensembl_gene_id: Caci_2235
symbol: Caci_2235
gene_biotype: protein_coding
description:
  PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; KEGG: nfa:nfa36990 hypothetical protein.


ensembl_gene_id: Caci_2237
symbol: Caci_2237
gene_biotype: protein_coding
description:
  Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; Resolvase helix-turn- helix domain protein; KEGG: fre:Franean1_7123 TetR family transcriptional regulator.


ensembl_gene_id: Caci_2238
symbol: Caci_2238
gene_biotype: protein_coding
description:
  TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: nfa:nfa9390 putative transporter.


ensembl_gene_id: Caci_2241
symbol: Caci_2241
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: scl:sce9122 putative binding-protein- dependent transport protein.


ensembl_gene_id: Caci_2244
symbol: zwf
gene_biotype: protein_coding
description:
  Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.


ensembl_gene_id: Caci_2245
symbol: tal
gene_biotype: protein_coding
description:
  Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.


ensembl_gene_id: Caci_2246
symbol: Caci_2246
gene_biotype: protein_coding
description:
  TIGRFAM: transketolase; PFAM: Transketolase central region; Transketolase domain protein; KEGG: kra:Krad_2922 transketolase; Belongs to the transketolase family.


ensembl_gene_id: Caci_2247
symbol: ctaB
gene_biotype: protein_coding
description:
  Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.


ensembl_gene_id: Caci_2248
symbol: Caci_2248
gene_biotype: protein_coding
description:
  TIGRFAM: mannose-6-phosphate isomerase, class I; PFAM: mannose-6-phosphate isomerase type I; KEGG: tfu:Tfu_0016 mannose-6-phosphate isomerase.


ensembl_gene_id: Caci_2249
symbol: Caci_2249
gene_biotype: protein_coding
description:
  PFAM: cytochrome oxidase assembly; KEGG: sma:SAV_6320 cytochrome c oxidase subunit XV assembly protein.


ensembl_gene_id: Caci_2251
symbol: Caci_2251
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sgr:SGR_5593 putative ABC transporter ATP- binding protein.


ensembl_gene_id: Caci_2253
symbol: Caci_2253
gene_biotype: protein_coding
description:
  Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: stp:Strop_1186 regulatory protein, LacI.


ensembl_gene_id: Caci_2254
symbol: Caci_2254
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: saq:Sare_1080 extracellular solute-binding protein.


ensembl_gene_id: Caci_2255
symbol: Caci_2255
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: saq:Sare_1081 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Caci_2256
symbol: Caci_2256
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: stp:Strop_1189 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Caci_2258
symbol: Caci_2258
gene_biotype: protein_coding
description:
  Alpha-mannosidase; PFAM: glycoside hydrolase family 38; Glycoside hydrolase family 38 central region; glycosyl hydrolase 38 domain protein; KEGG: sma:SAV_7277 alpha-mannosidase.


ensembl_gene_id: Caci_2262
symbol: Caci_2262
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; PFAM: HMG-I and HMG-Y DNA-binding domain protein; KEGG: sco:SCO1926 DNA-binding protein.


ensembl_gene_id: Caci_2263
symbol: Caci_2263
gene_biotype: protein_coding
description:
  TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: sma:SAV_6325 iron-regulated ABC-type transporter.


ensembl_gene_id: Caci_2264
symbol: Caci_2264
gene_biotype: protein_coding
description:
  TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: sma:SAV_6326 iron-regulated ABC-type transporter.


ensembl_gene_id: Caci_2265
symbol: Caci_2265
gene_biotype: protein_coding
description:
  PFAM: Rieske [2Fe-2S] domain protein; KEGG: sma:SAV_6327 ferredoxin subunit of phenylpropionate dioxygenase.


ensembl_gene_id: Caci_2266
symbol: Caci_2266
gene_biotype: protein_coding
description:
  FeS assembly ATPase SufC; KEGG: sco:SCO1922 ABC transporter ATP-binding subunit; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Caci_2267
symbol: Caci_2267
gene_biotype: protein_coding
description:
  TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; KEGG: sma:SAV_6329 aminotransferase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Caci_2268
symbol: Caci_2268
gene_biotype: protein_coding
description:
  TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: fre:Franean1_2090 NifU family SUF system FeS assembly protein.


ensembl_gene_id: Caci_2270
symbol: Caci_2270
gene_biotype: protein_coding
description:
  PFAM: NUDIX hydrolase; KEGG: fra:Francci3_1811 NUDIX hydrolase; Belongs to the Nudix hydrolase family.


ensembl_gene_id: Caci_2271
symbol: Caci_2271
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sgr:SGR_5653 putative ABC transporter ATP- binding protein.


ensembl_gene_id: Caci_2273
symbol: Caci_2273
gene_biotype: protein_coding
description:
  PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sma:SAV_6428 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: Caci_2277
symbol: Caci_2277
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: sen:SACE_3498 ABC-type multidrug transport system ATPase and permease components.


ensembl_gene_id: Caci_2285
symbol: Caci_2285
gene_biotype: protein_coding
description:
  Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: sma:SAV_6440 TetR family transcriptional regulator.


ensembl_gene_id: Caci_2287
symbol: Caci_2287
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sma:SAV_6442 hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Caci_2291
symbol: mscL
gene_biotype: protein_coding
description:
  Large conductance mechanosensitive channel protein; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.


ensembl_gene_id: Caci_2293
symbol: Caci_2293
gene_biotype: protein_coding
description:
  PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: nfa:nfa32010 hypothetical protein.


ensembl_gene_id: Caci_2294
symbol: Caci_2294
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: dac:Daci_0218 two component LuxR family transcriptional regulator.


ensembl_gene_id: Caci_2295
symbol: moaA
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.


ensembl_gene_id: Caci_2300
symbol: Caci_2300
gene_biotype: protein_coding
description:
  PFAM: peptidase U62 modulator of DNA gyrase; KEGG: ace:Acel_1149 peptidase U62, modulator of DNA gyrase.


ensembl_gene_id: Caci_2301
symbol: Caci_2301
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Caci_2302
symbol: Caci_2302
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sco:SCO1814 enoyl-(acyl carrier protein) reductase.


ensembl_gene_id: Caci_2305
symbol: Caci_2305
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: sco:SCO4443 MerR family transcriptional regulator.


ensembl_gene_id: Caci_2306
symbol: Caci_2306
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: fal:FRAAL3996 putative transmembrane efflux pump (multidrug resistance related protein).


ensembl_gene_id: Caci_2307
symbol: Caci_2307
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: lxx:Lxx21880 MarR family transcriptional regulator.


ensembl_gene_id: Caci_2309
symbol: Caci_2309
gene_biotype: protein_coding
description:
  Putative phosphohistidine phosphatase, SixA; PFAM: Phosphoglycerate mutase; KEGG: sma:SAV_7051 hypothetical protein.


ensembl_gene_id: Caci_2310
symbol: Caci_2310
gene_biotype: protein_coding
description:
  KEGG: sgr:SGR_5689 putative phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD- superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; amino acid-binding ACT domain protein.


ensembl_gene_id: Caci_2313
symbol: Caci_2313
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV_6480 ABC transporter ATP-binding protein.


ensembl_gene_id: Caci_2320
symbol: cobT
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).


ensembl_gene_id: Caci_2321
symbol: Caci_2321
gene_biotype: protein_coding
description:
  TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sgr:SGR_5984 putative uroporphyrin-III methyltransferase.


ensembl_gene_id: Caci_2328
symbol: Caci_2328
gene_biotype: protein_coding
description:
  PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; HI0933 family protein; KEGG: stp:Strop_2055 monooxygenase, FAD-binding.


ensembl_gene_id: Caci_2331
symbol: Caci_2331
gene_biotype: protein_coding
description:
  KEGG: bre:BRE_469 nucleoside-diphosphate kinase; PFAM: nucleoside diphosphate kinase; SMART: nucleoside diphosphate kinase; Belongs to the NDK family.


ensembl_gene_id: Caci_2332
symbol: Caci_2332
gene_biotype: protein_coding
description:
  PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; RNA binding S1 domain protein; KEGG: fal:FRAAL0492 putative transcriptional accessory protein.


ensembl_gene_id: Caci_2334
symbol: Caci_2334
gene_biotype: protein_coding
description:
  PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; helicase domain protein; KEGG: stp:Strop_1732 DEAD/DEAH box helicase domain- containing protein.


ensembl_gene_id: Caci_2340
symbol: Caci_2340
gene_biotype: protein_coding
description:
  Small GTP-binding protein; KEGG: ace:Acel_1356 elongation factor G; TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain IV; protein synthesis factor GTP-binding; elongation factor G domain protein; Miro domain protein; elongation factor Tu domain 2 protein; SMART: AAA ATPase.


ensembl_gene_id: Caci_2341
symbol: Caci_2341
gene_biotype: protein_coding
description:
  PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: rha:RHA1_ro05166 GntR family transcriptional regulator.


ensembl_gene_id: Caci_2342
symbol: leuA
gene_biotype: protein_coding
description:
  2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.


ensembl_gene_id: Caci_2343
symbol: Caci_2343
gene_biotype: protein_coding
description:
  PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sco:SCO1527 membrane transferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: Caci_2349
symbol: pdxS
gene_biotype: protein_coding
description:
  Pyridoxine biosynthesis protein; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family.


ensembl_gene_id: Caci_2350
symbol: pdxT
gene_biotype: protein_coding
description:
  SNO glutamine amidotransferase; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS.


ensembl_gene_id: Caci_2352
symbol: ruvC
gene_biotype: protein_coding
description:
  Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.


ensembl_gene_id: Caci_2353
symbol: ruvA
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.


ensembl_gene_id: Caci_2354
symbol: ruvB
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.


ensembl_gene_id: Caci_2355
symbol: Caci_2355
gene_biotype: protein_coding
description:
  TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: sco:SCO1517 secreted protein.


ensembl_gene_id: Caci_2356
symbol: secD
gene_biotype: protein_coding
description:
  Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: Caci_2357
symbol: secF
gene_biotype: protein_coding
description:
  Protein-export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: Caci_2358
symbol: apt
gene_biotype: protein_coding
description:
  Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.


ensembl_gene_id: Caci_2359
symbol: Caci_2359
gene_biotype: protein_coding
description:
  (p)ppGpp synthetase I, SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.


ensembl_gene_id: Caci_2365
symbol: hisS
gene_biotype: protein_coding
description:
  KEGG: sco:SCO1508 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein.


ensembl_gene_id: Caci_2366
symbol: aspS
gene_biotype: protein_coding
description:
  aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.


ensembl_gene_id: Caci_2369
symbol: Caci_2369
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family with aminotransferase domain; PFAM: aminotransferase class I and II; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: pzu:PHZ_c3113 transcriptional regulator, GntR family.


ensembl_gene_id: Caci_2373
symbol: Caci_2373
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mav:MAV_0668 ABC transporter, ATP-binding protein PstB; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Caci_2375
symbol: Caci_2375
gene_biotype: protein_coding
description:
  PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; magnesium chelatase ChlI subunit; SMART: AAA ATPase; KEGG: sco:SCO1506 recombination factor protein RarA.


ensembl_gene_id: Caci_2378
symbol: alaS
gene_biotype: protein_coding
description:
  alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.


ensembl_gene_id: Caci_2379
symbol: Caci_2379
gene_biotype: protein_coding
description:
  Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.


ensembl_gene_id: Caci_2381
symbol: Caci_2381
gene_biotype: protein_coding
description:
  PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase; KEGG: sgr:SGR_6037 putative shikimate 5- dehydrogenase; Belongs to the shikimate dehydrogenase family.


ensembl_gene_id: Caci_2382
symbol: Caci_2382
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: fal:FRAAL2486 putative methyltransferase.


ensembl_gene_id: Caci_2384
symbol: Caci_2384
gene_biotype: protein_coding
description:
  PFAM: tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sma:SAV_2262 serine/threonine protein kinase.


ensembl_gene_id: Caci_2388
symbol: aroC
gene_biotype: protein_coding
description:
  Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.


ensembl_gene_id: Caci_2389
symbol: aroK
gene_biotype: protein_coding
description:
  Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.


ensembl_gene_id: Caci_2390
symbol: aroB
gene_biotype: protein_coding
description:
  3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).


ensembl_gene_id: Caci_2391
symbol: aroQ
gene_biotype: protein_coding
description:
  3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.


ensembl_gene_id: Caci_2392
symbol: Caci_2392
gene_biotype: protein_coding
description:
  PFAM: peptidase M24; creatinase; KEGG: sen:SACE_2074 Xaa-Pro dipeptidase; Belongs to the peptidase M24B family.


ensembl_gene_id: Caci_2393
symbol: efp
gene_biotype: protein_coding
description:
  Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.


ensembl_gene_id: Caci_2394
symbol: nusB
gene_biotype: protein_coding
description:
  NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.


ensembl_gene_id: Caci_2399
symbol: Caci_2399
gene_biotype: protein_coding
description:
  PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sma:SAV_6861 DNA-binding protein.


ensembl_gene_id: Caci_2400
symbol: pyrR
gene_biotype: protein_coding
description:
  Uracil phosphoribosyltransferase; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant.


ensembl_gene_id: Caci_2401
symbol: pyrB
gene_biotype: protein_coding
description:
  KEGG: sgr:SGR_6047 putative aspartate carbamoyltransferase; TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.


ensembl_gene_id: Caci_2402
symbol: pyrC
gene_biotype: protein_coding
description:
  Dihydroorotase, multifunctional complex type; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.


ensembl_gene_id: Caci_2404
symbol: carA
gene_biotype: protein_coding
description:
  TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; KEGG: sgr:SGR_6050 putative carbamoyl-phosphate synthase small subunit; Belongs to the CarA family.


ensembl_gene_id: Caci_2405
symbol: carB
gene_biotype: protein_coding
description:
  TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; MGS domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl- phosphate synthetase large chain domain protein; KEGG: sma:SAV_6867 carbamoyl phosphate synthase large subunit; Belongs to the CarB family.


ensembl_gene_id: Caci_2406
symbol: pyrD
gene_biotype: protein_coding
description:
  Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.


ensembl_gene_id: Caci_2407
symbol: pyrF
gene_biotype: protein_coding
description:
  TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: sgr:SGR_6053 putative orotidine 5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily.


ensembl_gene_id: Caci_2412
symbol: Caci_2412
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sco:SCO1656 hydrolase.


ensembl_gene_id: Caci_2413
symbol: Caci_2413
gene_biotype: protein_coding
description:
  Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.


ensembl_gene_id: Caci_2415
symbol: Caci_2415
gene_biotype: protein_coding
description:
  PFAM: peptidase M50; CBS domain containing protein; KEGG: sco:SCO1652 hypothetical protein; Belongs to the peptidase M50B family.


ensembl_gene_id: Caci_2416
symbol: Caci_2416
gene_biotype: protein_coding
description:
  tRNA methyltransferase complex GCD14 subunit; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA.


ensembl_gene_id: Caci_2417
symbol: Caci_2417
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsa:RSal33209_1015 ABC transporter sugar permease.


ensembl_gene_id: Caci_2418
symbol: Caci_2418
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: rsa:RSal33209_1016 ABC-type sugar transporter, periplasmic component.


ensembl_gene_id: Caci_2419
symbol: Caci_2419
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsa:RSal33209_1017 ABC transporter sugar permease.


ensembl_gene_id: Caci_2423
symbol: arc
gene_biotype: protein_coding
description:
  AAA ATPase central domain protein; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis.


ensembl_gene_id: Caci_2424
symbol: Caci_2424
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF245 domain protein; protein of unknown function DUF275 domain protein; KEGG: sgr:SGR_5857 putative proteasome component.


ensembl_gene_id: Caci_2425
symbol: pup
gene_biotype: protein_coding
description:
  Protein of unknown function DUF797; Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation.


ensembl_gene_id: Caci_2426
symbol: prcB
gene_biotype: protein_coding
description:
  20S proteasome A and B subunits; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1B family.


ensembl_gene_id: Caci_2427
symbol: prcA
gene_biotype: protein_coding
description:
  20S proteasome A and B subunits; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1A family.


ensembl_gene_id: Caci_2428
symbol: pafA
gene_biotype: protein_coding
description:
  Protein of unknown function DUF245 domain protein; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side- chain amino group of a substrate lysine.


ensembl_gene_id: Caci_2429
symbol: Caci_2429
gene_biotype: protein_coding
description:
  PFAM: peptidylprolyl isomerase FKBP-type; KEGG: sma:SAV_6686 FK-506 binding protein, peptidyl- prolyl cis-trans isomerase.


ensembl_gene_id: Caci_2440
symbol: tatC
gene_biotype: protein_coding
description:
  Sec-independent protein translocase, TatC subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.


ensembl_gene_id: Caci_2441
symbol: Caci_2441
gene_biotype: protein_coding
description:
  PFAM: diacylglycerol kinase catalytic region; SMART: diacylglycerol kinase catalytic region; KEGG: sma:SAV_6694 hypothetical protein.


ensembl_gene_id: Caci_2442
symbol: Caci_2442
gene_biotype: protein_coding
description:
  PFAM: DEAD/DEAH box helicase domain protein; DSH domain protein; helicase domain protein; SMART: DEAD-like helicases; helicase domain protein; KEGG: sgr:SGR_5873 putative ATP-dependent RNA helicase.


ensembl_gene_id: Caci_2443
symbol: Caci_2443
gene_biotype: protein_coding
description:
  PFAM: 5'-3' exonuclease; SMART: 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2; KEGG: sgr:SGR_5889 putative 5'-3' exonuclease.


ensembl_gene_id: Caci_2444
symbol: Caci_2444
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: sma:SAV_1737 ABC transporter binding protein.


ensembl_gene_id: Caci_2445
symbol: Caci_2445
gene_biotype: protein_coding
description:
  Putative sensor with HAMP domain; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: sma:SAV_2179 sensor-like histidine kinase.


ensembl_gene_id: Caci_2450
symbol: Caci_2450
gene_biotype: protein_coding
description:
  KEGG: sma:SAV_6507 L-alanine dehydrogenase; TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein.


ensembl_gene_id: Caci_2452
symbol: xerD
gene_biotype: protein_coding
description:
  Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: Caci_2455
symbol: Caci_2455
gene_biotype: protein_coding
description:
  Chromosome segregation and condensation protein ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: Caci_2456
symbol: Caci_2456
gene_biotype: protein_coding
description:
  Chromosome segregation and condensation protein, ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: Caci_2458
symbol: Caci_2458
gene_biotype: protein_coding
description:
  PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: sgr:SGR_5729 putative pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: Caci_2460
symbol: Caci_2460
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: fre:Franean1_5457 helix-turn-helix domain- containing protein.


ensembl_gene_id: Caci_2461
symbol: Caci_2461
gene_biotype: protein_coding
description:
  TIGRFAM: chorismate mutase; PFAM: Chorismate mutase of the AroH class; KEGG: sma:SAV_6520 chorismate mutase.


ensembl_gene_id: Caci_2462
symbol: Caci_2462
gene_biotype: protein_coding
description:
  PFAM: Prephenate dehydrogenase; amino acid-binding ACT domain protein; KEGG: sgr:SGR_5738 putative prephenate dehydrogenase.


ensembl_gene_id: Caci_2466
symbol: Caci_2466
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; dTDP-4- dehydrorhamnose reductase; KEGG: fra:Francci3_2035 NAD-dependent epimerase/dehydratase.


ensembl_gene_id: Caci_2472
symbol: Caci_2472
gene_biotype: protein_coding
description:
  PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: nca:Noca_1815 electron transfer flavoprotein beta-subunit.


ensembl_gene_id: Caci_2473
symbol: Caci_2473
gene_biotype: protein_coding
description:
  PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; KEGG: ace:Acel_0685 electron transfer flavoprotein, alpha subunit.


ensembl_gene_id: Caci_2474
symbol: Caci_2474
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: fal:FRAAL6636 hypothetical protein.


ensembl_gene_id: Caci_2477
symbol: Caci_2477
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: nfa:nfa27380 putative sigma factor.


ensembl_gene_id: Caci_2478
symbol: Caci_2478
gene_biotype: protein_coding
description:
  TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase; KEGG: sgr:SGR_4078 putative flavodoxin; Belongs to the WrbA family.


ensembl_gene_id: Caci_2479
symbol: Caci_2479
gene_biotype: protein_coding
description:
  TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: fal:FRAAL3607 dihydrolipoamide dehydrogenase.


ensembl_gene_id: Caci_2481
symbol: Caci_2481
gene_biotype: protein_coding
description:
  Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: sen:SACE_7137 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein.


ensembl_gene_id: Caci_2484
symbol: Caci_2484
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: sen:SACE_4263 glycolate oxidase, iron-sulfur subunit.


ensembl_gene_id: Caci_2486
symbol: Caci_2486
gene_biotype: protein_coding
description:
  TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: amr:AM1_2206 hypothetical protein.


ensembl_gene_id: Caci_2492
symbol: Caci_2492
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fre:Franean1_6608 AraC family transcriptional regulator.


ensembl_gene_id: Caci_2497
symbol: Caci_2497
gene_biotype: protein_coding
description:
  Serine/threonine protein kinase; PFAM: Lanthionine synthetase C family protein; SMART: serine/threonine protein kinase; KEGG: sen:SACE_4613 hypothetical protein.


ensembl_gene_id: Caci_2500
symbol: Caci_2500
gene_biotype: protein_coding
description:
  Transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; KEGG: fre:Franean1_7075 DeoR family transcriptional regulator.


ensembl_gene_id: Caci_2507
symbol: Caci_2507
gene_biotype: protein_coding
description:
  Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: sen:SACE_0085 ArsR family transcriptional regulator.


ensembl_gene_id: Caci_2508
symbol: Caci_2508
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: sen:SACE_0084 EmrB/QacA family drug resistance transporter.


ensembl_gene_id: Caci_2511
symbol: Caci_2511
gene_biotype: protein_coding
description:
  KEGG: sgr:SGR_1978 LacI family transcriptional regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI.


ensembl_gene_id: Caci_2512
symbol: Caci_2512
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: sgr:SGR_1977 putative ABC transporter substrate-binding protein.


ensembl_gene_id: Caci_2513
symbol: Caci_2513
gene_biotype: protein_coding
description:
  Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: sgr:SGR_1976 putative ABC transporter ATP- binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Caci_2514
symbol: Caci_2514
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sgr:SGR_1975 putative ABC transporter permease protein.


ensembl_gene_id: Caci_2515
symbol: Caci_2515
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sgr:SGR_1974 putative ABC transporter permease protein.


ensembl_gene_id: Caci_2516
symbol: Caci_2516
gene_biotype: protein_coding
description:
  Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: sgr:SGR_1973 putative ABC transporter ATP- binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Caci_2517
symbol: Caci_2517
gene_biotype: protein_coding
description:
  Beta-galactosidase; KEGG: sgr:SGR_1972 putative beta-glucosidase; TIGRFAM: beta-galactosidase; PFAM: glycoside hydrolase family 1.


ensembl_gene_id: Caci_2518
symbol: Caci_2518
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: rha:RHA1_ro05361 RNA polymerase factor sigma- 70; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Caci_2526
symbol: Caci_2526
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: fal:FRAAL4137 ECF sub family sigma-70 factor.


ensembl_gene_id: Caci_2528
symbol: Caci_2528
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: fre:Franean1_1979 glycosyl hydrolase 53 protein.


ensembl_gene_id: Caci_2529
symbol: Caci_2529
gene_biotype: protein_coding
description:
  PFAM: Thaumatin pathogenesis-related protein; SMART: Thaumatin pathogenesis-related protein; KEGG: Os06g0691200; hypothetical protein.


ensembl_gene_id: Caci_2531
symbol: Caci_2531
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function ATP binding; Miro domain protein; KEGG: sgr:SGR_1060 putative ATP/GTP-binding protein.


ensembl_gene_id: Caci_2534
symbol: Caci_2534
gene_biotype: protein_coding
description:
  PFAM: ATP-binding region ATPase domain protein; KEGG: fra:Francci3_4330 ATP-binding region, ATPase- like.


ensembl_gene_id: Caci_2539
symbol: Caci_2539
gene_biotype: protein_coding
description:
  PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: bam:Bamb_0804 peptidase S8 and S53, subtilisin, kexin, sedolisin.


ensembl_gene_id: Caci_2546
symbol: Caci_2546
gene_biotype: protein_coding
description:
  Alpha,alpha-trehalose-phosphate synthase (UDP- forming); PFAM: glycosyl transferase family 20; KEGG: sen:SACE_0462 trehalose-6-phosphate synthase.


ensembl_gene_id: Caci_2547
symbol: Caci_2547
gene_biotype: protein_coding
description:
  PFAM: Nucleotidyl transferase; KEGG: nfa:nfa17780 putative UTP-glucose-1-phosphate uridylyltransferase.


ensembl_gene_id: Caci_2549
symbol: Caci_2549
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: rsa:RSal33209_2678 major facilitator transporter.


ensembl_gene_id: Caci_2558
symbol: Caci_2558
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: fal:FRAAL5375 putative short chain dehydrogenase/reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Caci_2561
symbol: Caci_2561
gene_biotype: protein_coding
description:
  PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; KEGG: pac:PPA1981 pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Caci_2562
symbol: Caci_2562
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bpy:Bphyt_5450 transcriptional regulator, AraC family.


ensembl_gene_id: Caci_2563
symbol: Caci_2563
gene_biotype: protein_coding
description:
  PFAM: cell surface receptor IPT/TIG domain protein; SMART: cell surface receptor IPT/TIG domain protein; KEGG: sma:SAV_57 hypothetical protein.


ensembl_gene_id: Caci_2564
symbol: Caci_2564
gene_biotype: protein_coding
description:
  PFAM: cell surface receptor IPT/TIG domain protein; SMART: cell surface receptor IPT/TIG domain protein; KEGG: sma:SAV_58 hypothetical protein.


ensembl_gene_id: Caci_2567
symbol: Caci_2567
gene_biotype: protein_coding
description:
  PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: sma:SAV_1477 LacI family transcriptional regulator.


ensembl_gene_id: Caci_2572
symbol: Caci_2572
gene_biotype: protein_coding
description:
  Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; Tetratricopeptide TPR_4; TPR repeat-containing protein; NB- ARC domain protein; transcriptional regulator domain protein; SMART: Tetratricopeptide domain protein; KEGG: sen:SACE_0488 SARP family transcriptional regulator.


ensembl_gene_id: Caci_2580
symbol: Caci_2580
gene_biotype: protein_coding
description:
  TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: cak:Caul_0241 EmrB/QacA family drug resistance transporter.


ensembl_gene_id: Caci_2581
symbol: Caci_2581
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: bha:BH3677 potassium uptake protein.


ensembl_gene_id: Caci_2587
symbol: Caci_2587
gene_biotype: protein_coding
description:
  TIGRFAM: PfaD family protein; malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: scl:sce4138 putative acyltransferase/oxidoreductase.


ensembl_gene_id: Caci_2588
symbol: Caci_2588
gene_biotype: protein_coding
description:
  TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; KEGG: sma:SAV_3642 non-ribosomal peptide synthetase.


ensembl_gene_id: Caci_2589
symbol: Caci_2589
gene_biotype: protein_coding
description:
  TIGRFAM: chlorinating enzyme; PFAM: Phytanoyl-CoA dioxygenase; KEGG: psb:Psyr_2610 chlorinating enzyme.


ensembl_gene_id: Caci_2591
symbol: Caci_2591
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: rsa:RSal33209_2791 Crp family transcriptional regulator.


ensembl_gene_id: Caci_2592
symbol: Caci_2592
gene_biotype: protein_coding
description:
  TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Beta- ketoacyl synthase; phosphopantetheine-binding; Non- ribosomal peptide synthetase; condensation domain protein; KEGG: scl:sce4135 hybrid polyketide synthase/nonribosomal peptide synthetase.


ensembl_gene_id: Caci_2593
symbol: Caci_2593
gene_biotype: protein_coding
description:
  PFAM: Thioesterase; KEGG: sen:SACE_4275 thioesterase involved in non- ribosomal peptide biosynthesis.


ensembl_gene_id: Caci_2595
symbol: Caci_2595
gene_biotype: protein_coding
description:
  PFAM: Hydroxymethylglutaryl-coenzyme A synthase domain protein; Hydroxymethylglutaryl-coenzyme A synthase domain; KEGG: cbd:CBUD_1931 hydroxymethylglutaryl-CoA synthase family protein.


ensembl_gene_id: Caci_2596
symbol: Caci_2596
gene_biotype: protein_coding
description:
  PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bte:BTH_II1669 polyketide biosynthesis enoyl- CoA hydratase.


ensembl_gene_id: Caci_2597
symbol: Caci_2597
gene_biotype: protein_coding
description:
  Malonyl CoA-acyl carrier protein transacylase; KEGG: scl:sce4135 hybrid polyketide synthase/nonribosomal peptide synthetase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Beta-ketoacyl synthase; Acyl transferase; KR domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding.


ensembl_gene_id: Caci_2598
symbol: Caci_2598
gene_biotype: protein_coding
description:
  PFAM: KR domain protein; Beta-ketoacyl synthase; Methyltransferase type 11; Enoyl-CoA hydratase/isomerase; Methyltransferase type 12; short-chain dehydrogenase/reductase SDR; aromatic amino acid beta- eliminating lyase/threonine aldolase; alpha/beta hydrolase fold protein; phosphopantetheine-binding; KEGG: scl:sce3193 polyketide synthase.


ensembl_gene_id: Caci_2601
symbol: Caci_2601
gene_biotype: protein_coding
description:
  PFAM: Hydroxymethylglutaryl-coenzyme A synthase domain protein; Hydroxymethylglutaryl-coenzyme A synthase domain; KEGG: mxa:MXAN_3945 polyketide TA biosynthesis protein TaF.


ensembl_gene_id: Caci_2603
symbol: Caci_2603
gene_biotype: protein_coding
description:
  PFAM: Beta-ketoacyl synthase; KEGG: sen:SACE_4575 polyketide beta-ketoacyl:acyl carrier protein synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: Caci_2608
symbol: Caci_2608
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 31; KEGG: sma:SAV_2570 glycosyl hydrolase; Belongs to the glycosyl hydrolase 31 family.


ensembl_gene_id: Caci_2609
symbol: Caci_2609
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cmi:CMM_0361 putative sugar ABC transporter, permease component.


ensembl_gene_id: Caci_2610
symbol: Caci_2610
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: art:Arth_3466 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Caci_2611
symbol: Caci_2611
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: cmi:CMM_0270 putative sugar ABC transporter, substrate binding protein.


ensembl_gene_id: Caci_2612
symbol: Caci_2612
gene_biotype: protein_coding
description:
  Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: sma:SAV_2569 LacI family transcriptional regulator.


ensembl_gene_id: Caci_2613
symbol: Caci_2613
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: kra:Krad_2789 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Caci_2614
symbol: Caci_2614
gene_biotype: protein_coding
description:
  2-hydroxyglutarate dehydrogenase; PFAM: FAD dependent oxidoreductase; KEGG: npu:Npun_R1079 FAD dependent oxidoreductase.


ensembl_gene_id: Caci_2617
symbol: Caci_2617
gene_biotype: protein_coding
description:
  PFAM: CsbD family protein; KEGG: hau:Haur_3862 CsbD family protein; Belongs to the UPF0337 (CsbD) family.


ensembl_gene_id: Caci_2619
symbol: Caci_2619
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: rxy:Rxyl_0630 transcriptional regulator, GntR family.


ensembl_gene_id: Caci_2622
symbol: Caci_2622
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: nca:Noca_0869 extracellular solute-binding protein.


ensembl_gene_id: Caci_2623
symbol: Caci_2623
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nca:Noca_0870 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Caci_2624
symbol: Caci_2624
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nca:Noca_0871 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Caci_2625
symbol: Caci_2625
gene_biotype: protein_coding
description:
  PFAM: Aldehyde Dehydrogenase; KEGG: pol:Bpro_4519 benzaldehyde dehydrogenase (NAD+); Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: Caci_2626
symbol: Caci_2626
gene_biotype: protein_coding
description:
  PFAM: amino acid permease-associated region; KEGG: acr:Acry_0648 amino acid permease-associated region.


ensembl_gene_id: Caci_2627
symbol: Caci_2627
gene_biotype: protein_coding
description:
  PFAM: Copper amine oxidase; Copper amine oxidase N3-terminal; Copper amine oxidase N2-terminal; KEGG: rha:RHA1_ro02608 tyramine oxidase.


ensembl_gene_id: Caci_2630
symbol: Caci_2630
gene_biotype: protein_coding
description:
  Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: kra:Krad_0483 anti-sigma-factor antagonist.


ensembl_gene_id: Caci_2632
symbol: Caci_2632
gene_biotype: protein_coding
description:
  KEGG: sco:SCO3691 regulatory protein; TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein.


ensembl_gene_id: Caci_2639
symbol: folE
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_4692 putative GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I.


ensembl_gene_id: Caci_2640
symbol: Caci_2640
gene_biotype: protein_coding
description:
  PFAM: arsenate reductase and related; KEGG: sco:SCO2206 hypothetical protein; Belongs to the ArsC family.


ensembl_gene_id: Caci_2641
symbol: Caci_2641
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sco:SCO7117 ferredoxin reductase.


ensembl_gene_id: Caci_2642
symbol: Caci_2642
gene_biotype: protein_coding
description:
  TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 6-phosphogluconate dehydrogenase domain protein; KEGG: mpa:MAP2670c 6-phosphogluconate dehydrogenase- like protein.


ensembl_gene_id: Caci_2645
symbol: Caci_2645
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 18; KEGG: sco:SCO7633 secreted endo-beta-N- acetylglucosaminidase; Belongs to the glycosyl hydrolase 18 family.


ensembl_gene_id: Caci_2647
symbol: Caci_2647
gene_biotype: protein_coding
description:
  FHA domain containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: sgr:SGR_3730 hypothetical protein.


ensembl_gene_id: Caci_2648
symbol: Caci_2648
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: fra:Francci3_0341 extracellular ligand- binding receptor.


ensembl_gene_id: Caci_2654
symbol: Caci_2654
gene_biotype: protein_coding
description:
  Beta-galactosidase; PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 TIM barrel; KEGG: sal:Sala_1017 beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.


ensembl_gene_id: Caci_2656
symbol: Caci_2656
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; SMART: response regulator receiver; regulatory protein LuxR; KEGG: rha:RHA1_ro00150 response regulator, two- component system.


ensembl_gene_id: Caci_2657
symbol: Caci_2657
gene_biotype: protein_coding
description:
  PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: sgr:SGR_4104 putative two-component system sensor kinase.


ensembl_gene_id: Caci_2659
symbol: Caci_2659
gene_biotype: protein_coding
description:
  PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; KEGG: cms:CMS_1996 30S ribosomal protein S1.


ensembl_gene_id: Caci_2661
symbol: Caci_2661
gene_biotype: protein_coding
description:
  PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: sgr:SGR_3455 AsnC family transcriptional regulator.


ensembl_gene_id: Caci_2664
symbol: Caci_2664
gene_biotype: protein_coding
description:
  KEGG: sco:SCO1078 LacI family transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI.


ensembl_gene_id: Caci_2665
symbol: Caci_2665
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: rxy:Rxyl_3188 transcriptional regulator, LuxR family.


ensembl_gene_id: Caci_2671
symbol: Caci_2671
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sco:SCO4820 serine/threonine protein kinase.


ensembl_gene_id: Caci_2674
symbol: Caci_2674
gene_biotype: protein_coding
description:
  Phospholipase D; KEGG: fal:FRAAL1744 hypothetical protein; PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase.


ensembl_gene_id: Caci_2678
symbol: Caci_2678
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO6603 transmembrane sugar transport protein.


ensembl_gene_id: Caci_2679
symbol: Caci_2679
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV_1803 sugar ABC transporter permease protein.


ensembl_gene_id: Caci_2680
symbol: Caci_2680
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: sma:SAV_1804 sugar ABC transporter solute- binding protein.


ensembl_gene_id: Caci_2682
symbol: Caci_2682
gene_biotype: protein_coding
description:
  PFAM: regulatory protein DeoR; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein DeoR; KEGG: sgr:SGR_290 LacI family transcriptional regulator.


ensembl_gene_id: Caci_2683
symbol: Caci_2683
gene_biotype: protein_coding
description:
  PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: sgr:SGR_2768 2-hydroxyacid family dehydrogenase.


ensembl_gene_id: Caci_2686
symbol: Caci_2686
gene_biotype: protein_coding
description:
  PFAM: CsbD family protein; KEGG: scl:sce0440 hypothetical protein; Belongs to the UPF0337 (CsbD) family.


ensembl_gene_id: Caci_2687
symbol: Caci_2687
gene_biotype: protein_coding
description:
  PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: sen:SACE_6753 cyclopropane-fatty-acyl- phospholipid synthase.


ensembl_gene_id: Caci_2691
symbol: Caci_2691
gene_biotype: protein_coding
description:
  PFAM: alpha/beta hydrolase fold protein; PGAP1 family protein; KEGG: stp:Strop_0621 alpha/beta hydrolase fold protein.


ensembl_gene_id: Caci_2692
symbol: Caci_2692
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sen:SACE_3775 LysR family transcriptional regulator.


ensembl_gene_id: Caci_2696
symbol: Caci_2696
gene_biotype: protein_coding
description:
  Sterol 3-beta-glucosyltransferase; PFAM: glycosyl transferase family 28; KEGG: sma:SAV_7185 UDP-glucose:sterol glucosyltransferase.


ensembl_gene_id: Caci_2697
symbol: Caci_2697
gene_biotype: protein_coding
description:
  PFAM: legume lectin beta domain; Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone; KEGG: hypothetical protein.


ensembl_gene_id: Caci_2698
symbol: Caci_2698
gene_biotype: protein_coding
description:
  TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: fal:FRAAL2091 putative transmembrane efflux protein.


ensembl_gene_id: Caci_2700
symbol: Caci_2700
gene_biotype: protein_coding
description:
  PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicases; helicase domain protein; KEGG: sco:SCO5920 DEAD-box RNA helicase.


ensembl_gene_id: Caci_2701
symbol: Caci_2701
gene_biotype: protein_coding
description:
  PFAM: Cold-shock protein DNA-binding; Ribonuclease B OB region domain; SMART: Cold shock protein; KEGG: sco:SCO3731 cold-shock protein.


ensembl_gene_id: Caci_2702
symbol: Caci_2702
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: sco:SCO4688 hypothetical protein.


ensembl_gene_id: Caci_2703
symbol: Caci_2703
gene_biotype: protein_coding
description:
  PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: mbo:Mb0360 chaperone protein DnaJ1.


ensembl_gene_id: Caci_2704
symbol: Caci_2704
gene_biotype: protein_coding
description:
  PFAM: heat shock protein Hsp20; KEGG: sma:SAV_459 heat shock protein; Belongs to the small heat shock protein (HSP20) family.


ensembl_gene_id: Caci_2709
symbol: Caci_2709
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: sgr:SGR_6401 putative alcohol dehydrogenase.


ensembl_gene_id: Caci_2710
symbol: Caci_2710
gene_biotype: protein_coding
description:
  PFAM: Aldehyde Dehydrogenase; KEGG: sgr:SGR_6402 putative aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: Caci_2712
symbol: Caci_2712
gene_biotype: protein_coding
description:
  PFAM: Calcium-binding EF-hand-containing protein; SMART: Calcium-binding EF-hand-containing protein; KEGG: sgr:SGR_6613 putative calcium-binding protein.


ensembl_gene_id: Caci_2717
symbol: Caci_2717
gene_biotype: protein_coding
description:
  PFAM: AMP-dependent synthetase and ligase; KEGG: fra:Francci3_4204 AMP-dependent synthetase and ligase.


ensembl_gene_id: Caci_2720
symbol: Caci_2720
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sen:SACE_5381 putative 3-oxoacyl-[acyl- carrier protein] reductase.


ensembl_gene_id: Caci_2723
symbol: Caci_2723
gene_biotype: protein_coding
description:
  TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; KEGG: bbt:BBta_4110 putative non-ribosomal peptide synthase.


ensembl_gene_id: Caci_2725
symbol: Caci_2725
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: saq:Sare_1270 LuxR family transcriptional regulator.


ensembl_gene_id: Caci_2726
symbol: Caci_2726
gene_biotype: protein_coding
description:
  TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_1339 major facilitator superfamily permease.


ensembl_gene_id: Caci_2727
symbol: Caci_2727
gene_biotype: protein_coding
description:
  Transcriptional regulator, TetR family; PFAM: Tetracyclin repressor domain protein; regulatory protein TetR; KEGG: sco:SCO7624 TetR family transcriptional regulator.


ensembl_gene_id: Caci_2728
symbol: Caci_2728
gene_biotype: protein_coding
description:
  PFAM: Alpha-L-arabinofuranosidase B catalytic; cellulose-binding family II; SMART: cellulose-binding family II; KEGG: fungal alpha-L-arabinofuranosidase.


ensembl_gene_id: Caci_2731
symbol: Caci_2731
gene_biotype: protein_coding
description:
  PFAM: 60 kDa inner membrane insertion protein; KEGG: sco:SCO3883 putative inner membrane protein translocase component YidC.


ensembl_gene_id: Caci_2734
symbol: Caci_2734
gene_biotype: protein_coding
description:
  PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: sen:SACE_3091 oxidoreductase, iron-sulphur binding subunit.


ensembl_gene_id: Caci_2735
symbol: Caci_2735
gene_biotype: protein_coding
description:
  PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: sen:SACE_3092 xanthine dehydrogenase FAD- binding subunit.


ensembl_gene_id: Caci_2736
symbol: Caci_2736
gene_biotype: protein_coding
description:
  PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: sen:SACE_3093 xanthine dehydrogenase molybdopterin binding subunit.


ensembl_gene_id: Caci_2744
symbol: Caci_2744
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV_1411 ABC transporter permease protein.


ensembl_gene_id: Caci_2745
symbol: Caci_2745
gene_biotype: protein_coding
description:
  PFAM: cellulose-binding family II; SMART: cellulose-binding family II; KEGG: tfu:Tfu_1627 cellulose 1,4-beta- cellobiosidase.


ensembl_gene_id: Caci_2746
symbol: Caci_2746
gene_biotype: protein_coding
description:
  PFAM: Ricin B lectin; glycoside hydrolase family 30; Ig family protein; KEGG: hypothetical protein; K01201 glucosylceramidase.


ensembl_gene_id: Caci_2750
symbol: Caci_2750
gene_biotype: protein_coding
description:
  TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: hau:Haur_1415 EmrB/QacA family drug resistance transporter.


ensembl_gene_id: Caci_2751
symbol: Caci_2751
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: fre:Franean1_7275 MarR family transcriptional regulator.


ensembl_gene_id: Caci_2754
symbol: Caci_2754
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; KEGG: sma:SAV_3894 integral membrane efflux protein.


ensembl_gene_id: Caci_2755
symbol: Caci_2755
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1684; KEGG: aau:AAur_3731 putative protein of unknown function (DUF1684).


ensembl_gene_id: Caci_2759
symbol: Caci_2759
gene_biotype: protein_coding
description:
  PFAM: flavin reductase domain protein FMN-binding; KEGG: fre:Franean1_4101 flavin reductase domain- containing protein.


ensembl_gene_id: Caci_2760
symbol: Caci_2760
gene_biotype: protein_coding
description:
  TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: rha:RHA1_ro04161 transcriptional regulator.


ensembl_gene_id: Caci_2763
symbol: Caci_2763
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: fre:Franean1_2510 extracellular solute- binding protein.


ensembl_gene_id: Caci_2764
symbol: Caci_2764
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fre:Franean1_2511 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Caci_2765
symbol: Caci_2765
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fre:Franean1_2512 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Caci_2766
symbol: Caci_2766
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fre:Franean1_2513 oligopeptide/dipeptide ABC transporter, ATPase subunit.


ensembl_gene_id: Caci_2767
symbol: Caci_2767
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fre:Franean1_2514 oligopeptide/dipeptide ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Caci_2769
symbol: Caci_2769
gene_biotype: protein_coding
description:
  PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: tfu:Tfu_0340 trimethylamine-N-oxide reductase (cytochrome c); Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: Caci_2770
symbol: Caci_2770
gene_biotype: protein_coding
description:
  PFAM: Acyl-CoA dehydrogenase type 2 domain; acyl- CoA dehydrogenase domain protein; KEGG: fre:Franean1_2020 acyl-CoA dehydrogenase type 2.


ensembl_gene_id: Caci_2775
symbol: Caci_2775
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: fal:FRAAL2382 putative ABC transporter substrate-binding protein.


ensembl_gene_id: Caci_2776
symbol: Caci_2776
gene_biotype: protein_coding
description:
  TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nca:Noca_4574 polar amino acid ABC transporter, inner membrane subunit.


ensembl_gene_id: Caci_2777
symbol: Caci_2777
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV_6281 ABC transporter ATP-binding protein - glutamine transport.


ensembl_gene_id: Caci_2780
symbol: Caci_2780
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: NB-ARC domain protein; SMART: helix-turn-helix domain protein; Tetratricopeptide domain protein; KEGG: stp:Strop_4244 transcriptional activator domain-containing protein.


ensembl_gene_id: Caci_2783
symbol: Caci_2783
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: hau:Haur_1243 extracellular solute-binding protein.


ensembl_gene_id: Caci_2784
symbol: Caci_2784
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hau:Haur_1244 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Caci_2785
symbol: Caci_2785
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hau:Haur_1245 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Caci_2792
symbol: Caci_2792
gene_biotype: protein_coding
description:
  PFAM: cellulose-binding family II; Fibronectin type III domain protein; SMART: cellulose-binding family II; Fibronectin type III domain protein; KEGG: bay:RBAM_018140 YnfF.


ensembl_gene_id: Caci_2793
symbol: Caci_2793
gene_biotype: protein_coding
description:
  PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sgr:SGR_2570 putative anti-anti-sigma regulatory factor.


ensembl_gene_id: Caci_2794
symbol: Caci_2794
gene_biotype: protein_coding
description:
  PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sgr:SGR_2571 putative anti-sigma factor antagonist.


ensembl_gene_id: Caci_2795
symbol: Caci_2795
gene_biotype: protein_coding
description:
  Putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: sgr:SGR_2572 putative anti-sigma factor.


ensembl_gene_id: Caci_2796
symbol: Caci_2796
gene_biotype: protein_coding
description:
  Putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sgr:SGR_2573 hypothetical protein.


ensembl_gene_id: Caci_2797
symbol: Caci_2797
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; KEGG: sgr:SGR_2574 putative two-component system sensor kinase.


ensembl_gene_id: Caci_2798
symbol: Caci_2798
gene_biotype: protein_coding
description:
  PFAM: Stage II sporulation E family protein; response regulator receiver; SMART: response regulator receiver; protein phosphatase 2C domain protein; KEGG: sgr:SGR_2575 hypothetical protein.


ensembl_gene_id: Caci_2799
symbol: Caci_2799
gene_biotype: protein_coding
description:
  Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sco:SCO3067 anti anti sigma factor; Belongs to the anti-sigma-factor antagonist family.


ensembl_gene_id: Caci_2800
symbol: Caci_2800
gene_biotype: protein_coding
description:
  Putative signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: kra:Krad_1003 protein serine phosphatase with GAF(s) sensor(s).


ensembl_gene_id: Caci_2803
symbol: Caci_2803
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: stp:Strop_3158 sigma-70 region 4 domain- containing protein; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Caci_2808
symbol: Caci_2808
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: kra:Krad_2735 MerR family transcriptional regulator.


ensembl_gene_id: Caci_2811
symbol: Caci_2811
gene_biotype: protein_coding
description:
  Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: pzu:PHZ_c1971 transcriptional regulator, ArsR family.


ensembl_gene_id: Caci_2820
symbol: Caci_2820
gene_biotype: protein_coding
description:
  TIGRFAM: adenylyl cyclase CyaB; PFAM: adenylate cyclase; KEGG: tko:TK1179 adenylate cyclase, class 2.


ensembl_gene_id: Caci_2821
symbol: Caci_2821
gene_biotype: protein_coding
description:
  SMART: helix-turn-helix domain protein; KEGG: fre:Franean1_5332 XRE family transcriptional regulator.


ensembl_gene_id: Caci_2852
symbol: Caci_2852
gene_biotype: protein_coding
description:
  TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: cth:Cthe_2866 phage major capsid protein, HK97.


ensembl_gene_id: Caci_2853
symbol: Caci_2853
gene_biotype: protein_coding
description:
  PFAM: peptidase S14 ClpP; KEGG: apa:APP7_0491 putative Clp-like protease; Belongs to the peptidase S14 family.


ensembl_gene_id: Caci_2880
symbol: Caci_2880
gene_biotype: protein_coding
description:
  Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: fra:Francci3_1989 putative PAS/PAC sensor protein.


ensembl_gene_id: Caci_2890
symbol: Caci_2890
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; SMART: regulatory protein GntR HTH; KEGG: saq:Sare_0152 GntR family transcriptional regulator.


ensembl_gene_id: Caci_2891
symbol: Caci_2891
gene_biotype: protein_coding
description:
  Putative transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; KEGG: saq:Sare_0151 UbiC transcription regulator- associated domain-containing protein.


ensembl_gene_id: Caci_2896
symbol: Caci_2896
gene_biotype: protein_coding
description:
  Putative transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; KEGG: sco:SCO4215 GntR family regulatory protein.


ensembl_gene_id: Caci_2940
symbol: Caci_2940
gene_biotype: protein_coding
description:
  PFAM: protein-L-isoaspartate(D-aspartate) O- methyltransferase; KEGG: tfu:Tfu_3003 putative O-methyltransferase.


ensembl_gene_id: Caci_2952
symbol: ku
gene_biotype: protein_coding
description:
  Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.


ensembl_gene_id: Caci_2962
symbol: Caci_2962
gene_biotype: protein_coding
description:
  KEGG: sco:SCO3714 transposase; TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB.


ensembl_gene_id: Caci_3013
symbol: Caci_3013
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: rxy:Rxyl_0882 transcriptional regulator, LuxR family.


ensembl_gene_id: Caci_3020
symbol: Caci_3020
gene_biotype: protein_coding
description:
  TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: kra:Krad_4338 single-strand binding protein.


ensembl_gene_id: Caci_3031
symbol: Caci_3031
gene_biotype: protein_coding
description:
  PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; KEGG: lbl:LBL_1865 ParB-like protein.


ensembl_gene_id: Caci_3037
symbol: Caci_3037
gene_biotype: protein_coding
description:
  PFAM: C-5 cytosine-specific DNA methylase; KEGG: cms:CMS_pCSL0052 putative DNA modification methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.


ensembl_gene_id: Caci_3043
symbol: Caci_3043
gene_biotype: protein_coding
description:
  PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: mgi:Mflv_5555 D12 class N6 adenine-specific DNA methyltransferase.


ensembl_gene_id: Caci_3048
symbol: Caci_3048
gene_biotype: protein_coding
description:
  Phage-related protein predicted endonuclease-like protein; KEGG: mmi:MMAR_3929 hypothetical protein.


ensembl_gene_id: Caci_3059
symbol: der
gene_biotype: protein_coding
description:
  Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.


ensembl_gene_id: Caci_3060
symbol: Caci_3060
gene_biotype: protein_coding
description:
  PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: sco:SCO1759 transferase.


ensembl_gene_id: Caci_3061
symbol: cmk
gene_biotype: protein_coding
description:
  TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; KEGG: sgr:SGR_5739 putative cytidylate kinase.


ensembl_gene_id: Caci_3062
symbol: Caci_3062
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ace:Acel_1455 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Caci_3064
symbol: Caci_3064
gene_biotype: protein_coding
description:
  TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: sgr:SGR_3628 putative Dyp-type peroxidase family protein.


ensembl_gene_id: Caci_3067
symbol: Caci_3067
gene_biotype: protein_coding
description:
  PFAM: electron transport protein SCO1/SenC; KEGG: fra:Francci3_2499 electron transport protein SCO1/SenC.


ensembl_gene_id: Caci_3071
symbol: Caci_3071
gene_biotype: protein_coding
description:
  PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sco:SCO0542 regulatory protein.


ensembl_gene_id: Caci_3076
symbol: Caci_3076
gene_biotype: protein_coding
description:
  PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: rha:RHA1_ro04527 magnesium chelatase.


ensembl_gene_id: Caci_3080
symbol: Caci_3080
gene_biotype: protein_coding
description:
  Putative signal transduction protein with CBS domains; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: mbb:BCG_2653c hypothetical protein.


ensembl_gene_id: Caci_3081
symbol: Caci_3081
gene_biotype: protein_coding
description:
  PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: sma:SAV_2178 ABC transporter substrate- binding protein.


ensembl_gene_id: Caci_3085
symbol: Caci_3085
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO6064 ABC transporter permease protein.


ensembl_gene_id: Caci_3086
symbol: Caci_3086
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO6063 ABC transporter permease protein.


ensembl_gene_id: Caci_3087
symbol: Caci_3087
gene_biotype: protein_coding
description:
  KEGG: sco:SCO6062 ABC transporter ATP-binding protein; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Caci_3093
symbol: Caci_3093
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: art:Arth_0750 ABC transporter related; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Caci_3097
symbol: priA
gene_biotype: protein_coding
description:
  Primosomal protein N' (replication factor Y) - superfamily II helicase-like protein; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.


ensembl_gene_id: Caci_3098
symbol: def
gene_biotype: protein_coding
description:
  Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.


ensembl_gene_id: Caci_3099
symbol: fmt
gene_biotype: protein_coding
description:
  methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.


ensembl_gene_id: Caci_3100
symbol: Caci_3100
gene_biotype: protein_coding
description:
  PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: sma:SAV_6878 RNA-binding Sun protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.


ensembl_gene_id: Caci_3102
symbol: Caci_3102
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: kra:Krad_4254 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Caci_3105
symbol: Caci_3105
gene_biotype: protein_coding
description:
  KEGG: sma:SAV_6880 ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.


ensembl_gene_id: Caci_3106
symbol: Caci_3106
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sgr:SGR_2194 putative serine/threonine protein kinase.


ensembl_gene_id: Caci_3107
symbol: Caci_3107
gene_biotype: protein_coding
description:
  TIGRFAM: riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein; KEGG: sgr:SGR_6090 putative riboflavin synthase alpha subunit.


ensembl_gene_id: Caci_3108
symbol: ribBA
gene_biotype: protein_coding
description:
  GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.


ensembl_gene_id: Caci_3109
symbol: ribH
gene_biotype: protein_coding
description:
  6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.


ensembl_gene_id: Caci_3110
symbol: hisE
gene_biotype: protein_coding
description:
  TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-ATP pyrophosphohydrolase; KEGG: tfu:Tfu_0175 phosphoribosyl-ATP pyrophosphatase.


ensembl_gene_id: Caci_3112
symbol: hisG
gene_biotype: protein_coding
description:
  ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Long subfamily.


ensembl_gene_id: Caci_3116
symbol: Caci_3116
gene_biotype: protein_coding
description:
  PFAM: Ketopantoate reductase ApbA/PanE domain protein; KEGG: kra:Krad_4304 2-dehydropantoate 2-reductase.


ensembl_gene_id: Caci_3121
symbol: Caci_3121
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: afe:Lferr_1679 transcriptional regulator, MarR family.


ensembl_gene_id: Caci_3122
symbol: Caci_3122
gene_biotype: protein_coding
description:
  PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sco:SCO1389 CDP-diacylglycerol--glycerol-3- phosphate 3-phosphatidyl-transferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: Caci_3127
symbol: gcvH
gene_biotype: protein_coding
description:
  Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.


ensembl_gene_id: Caci_3128
symbol: Caci_3128
gene_biotype: protein_coding
description:
  FHA domain containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: fra:Francci3_1468 FHA domain-containing protein.


ensembl_gene_id: Caci_3129
symbol: Caci_3129
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: ace:Acel_1225 MerR family transcriptional regulator.


ensembl_gene_id: Caci_3134
symbol: Caci_3134
gene_biotype: protein_coding
description:
  PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: sco:SCO3921 low molecular weight protein- tyrosine-phosphatase.


ensembl_gene_id: Caci_3135
symbol: Caci_3135
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: nfa:nfa31570 putative short chain dehydrogenase.


ensembl_gene_id: Caci_3137
symbol: Caci_3137
gene_biotype: protein_coding
description:
  Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: nca:Noca_4614 sigma-70 region 2 domain- containing protein.


ensembl_gene_id: Caci_3138
symbol: Caci_3138
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: saq:Sare_0079 RNA polymerase factor sigma-70; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Caci_3139
symbol: Caci_3139
gene_biotype: protein_coding
description:
  TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr6921 putative multidrug resistance protein.


ensembl_gene_id: Caci_3142
symbol: Caci_3142
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: GG15162 gene product from transcript GG15162- RA; K02360 a component of the cytoplasm (encore).


ensembl_gene_id: Caci_3147
symbol: Caci_3147
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.


ensembl_gene_id: Caci_3148
symbol: Caci_3148
gene_biotype: protein_coding
description:
  TIGRFAM: secretion protein snm4; PFAM: protein of unknown function DUF571; KEGG: saq:Sare_0940 hypothetical protein.


ensembl_gene_id: Caci_3152
symbol: Caci_3152
gene_biotype: protein_coding
description:
  Putative signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: dge:Dgeo_1706 periplasmic sensor signal transduction histidine kinase.


ensembl_gene_id: Caci_3153
symbol: Caci_3153
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver; KEGG: nca:Noca_2943 two component LuxR family transcriptional regulator.


ensembl_gene_id: Caci_3155
symbol: Caci_3155
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: art:Arth_3893 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Caci_3156
symbol: Caci_3156
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: art:Arth_3894 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Caci_3157
symbol: Caci_3157
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_3895 extracellular solute-binding protein, family 1.


ensembl_gene_id: Caci_3158
symbol: Caci_3158
gene_biotype: protein_coding
description:
  PFAM: bifunctional deaminase-reductase domain protein; KEGG: rxy:Rxyl_2316 bifunctional deaminase- reductase-like protein.


ensembl_gene_id: Caci_3160
symbol: Caci_3160
gene_biotype: protein_coding
description:
  PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: sco:SCO7782 IS110 transposase.


ensembl_gene_id: Caci_3165
symbol: Caci_3165
gene_biotype: protein_coding
description:
  PFAM: Ricin B lectin; PKD domain containing protein; Carbohydrate-binding CenC domain protein; SMART: PKD domain containing protein; Ricin B lectin; KEGG: sgr:SGR_7130t hypothetical protein.


ensembl_gene_id: Caci_3166
symbol: Caci_3166
gene_biotype: protein_coding
description:
  TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: stp:Strop_1054 YD repeat-containing protein.


ensembl_gene_id: Caci_3167
symbol: Caci_3167
gene_biotype: protein_coding
description:
  Beta-N-acetylhexosaminidase; PFAM: glycoside hydrolase family 3 domain protein; KEGG: hypothetical protein.


ensembl_gene_id: Caci_3169
symbol: Caci_3169
gene_biotype: protein_coding
description:
  PFAM: 2OG-Fe(II) oxygenase; KEGG: sma:SAV_3860 iron/ascorbate-dependent oxidoreductase; Belongs to the iron/ascorbate-dependent oxidoreductase family.


ensembl_gene_id: Caci_3171
symbol: Caci_3171
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sen:SACE_3702 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Caci_3172
symbol: Caci_3172
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fre:Franean1_4177 AraC family transcriptional regulator.


ensembl_gene_id: Caci_3173
symbol: Caci_3173
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rha:RHA1_ro07099 hypothetical protein.


ensembl_gene_id: Caci_3177
symbol: Caci_3177
gene_biotype: protein_coding
description:
  TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: fre:Franean1_4243 EmrB/QacA family drug resistance transporter.


ensembl_gene_id: Caci_3182
symbol: Caci_3182
gene_biotype: protein_coding
description:
  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; Peptidoglycan-binding domain 1 protein; SMART: Animal peptidoglycan recognition protein PGRP; N-acetylmuramoyl-L-alanine amidase family 2; KEGG: sen:SACE_3731 hypothetical protein.


ensembl_gene_id: Caci_3185
symbol: Caci_3185
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: rha:RHA1_ro00197 RNA polymerase factor sigma- 70; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Caci_3188
symbol: Caci_3188
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: eba:ebA5761 putative oxidoreductase, zinc- containing alcohol dehydrogenase.


ensembl_gene_id: Caci_3195
symbol: Caci_3195
gene_biotype: protein_coding
description:
  PFAM: periplasmic solute binding protein; KEGG: fra:Francci3_2479 periplasmic solute binding protein.


ensembl_gene_id: Caci_3202
symbol: Caci_3202
gene_biotype: protein_coding
description:
  PFAM: copper resistance protein CopC; copper resistance D domain protein; KEGG: fra:Francci3_4174 copper resistance protein CopC.


ensembl_gene_id: Caci_3206
symbol: Caci_3206
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV_3962 ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Caci_3209
symbol: Caci_3209
gene_biotype: protein_coding
description:
  PFAM: conserved hypothetical protein; KEGG: sma:SAV_2751 hypothetical protein; Belongs to the LOG family.


ensembl_gene_id: Caci_3212
symbol: Caci_3212
gene_biotype: protein_coding
description:
  PFAM: peptidase S45 penicillin amidase; coagulation factor 5/8 type domain protein; SMART: coagulation factor 5/8 type domain protein; KEGG: sma:SAV_6608 penicillin acylase.


ensembl_gene_id: Caci_3214
symbol: Caci_3214
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: stp:Strop_2211 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Caci_3215
symbol: Caci_3215
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: msm:MSMEG_1799 transcriptional regulator.


ensembl_gene_id: Caci_3216
symbol: Caci_3216
gene_biotype: protein_coding
description:
  PFAM: FAD dependent oxidoreductase; HI0933 family protein; KEGG: bxe:Bxe_C0878 hypothetical protein.


ensembl_gene_id: Caci_3223
symbol: Caci_3223
gene_biotype: protein_coding
description:
  PFAM: transcriptional regulator PadR family protein; KEGG: nfa:nfa11020 putative transcriptional regulator.


ensembl_gene_id: Caci_3225
symbol: Caci_3225
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rha:RHA1_ro00298 AraC family transcriptional regulator.


ensembl_gene_id: Caci_3227
symbol: Caci_3227
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: spe:Spro_2613 alcohol dehydrogenase.


ensembl_gene_id: Caci_3228
symbol: Caci_3228
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: sco:SCO0927 LysR family transcriptional regulator.


ensembl_gene_id: Caci_3232
symbol: Caci_3232
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase group 1; Starch synthase catalytic domain protein; KEGG: sen:SACE_6200 transferase.


ensembl_gene_id: Caci_3233
symbol: Caci_3233
gene_biotype: protein_coding
description:
  1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position. Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.


ensembl_gene_id: Caci_3245
symbol: Caci_3245
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: fre:Franean1_1674 NAD-dependent epimerase/dehydratase.


ensembl_gene_id: Caci_3246
symbol: Caci_3246
gene_biotype: protein_coding
description:
  KEGG: hau:Haur_2410 daunorubicin resistance ABC transporter ATPase subunit; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Caci_3248
symbol: Caci_3248
gene_biotype: protein_coding
description:
  TIGRFAM: glycosyltransferase, MGT family; PFAM: Glycosyltransferase 28 domain; UDP- glucuronosyl/UDP-glucosyltransferase; glycosyl transferase family 28; KEGG: fra:Francci3_0930 glycosyl transferase family protein.


ensembl_gene_id: Caci_3249
symbol: Caci_3249
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Cyclopropane-fatty- acyl-phospholipid synthase; thiopurine S-methyltransferase; Methyltransferase type 12; KEGG: cyb:CYB_2403 cyclopropane-fatty-acyl- phospholipid synthase family protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. gTMT family.


ensembl_gene_id: Caci_3253
symbol: Caci_3253
gene_biotype: protein_coding
description:
  Beta-ketoacyl-acyl-carrier-protein synthase I; PFAM: Beta-ketoacyl synthase; KEGG: saq:Sare_2677 beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: Caci_3255
symbol: Caci_3255
gene_biotype: protein_coding
description:
  PFAM: Beta-ketoacyl synthase; KEGG: saq:Sare_2674 beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: Caci_3256
symbol: Caci_3256
gene_biotype: protein_coding
description:
  KEGG: saq:Sare_2673 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Caci_3259
symbol: Caci_3259
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase (acetyl-transferring); PFAM: dehydrogenase E1 component; KEGG: saq:Sare_2670 dehydrogenase E1 component.


ensembl_gene_id: Caci_3260
symbol: Caci_3260
gene_biotype: protein_coding
description:
  PFAM: Transketolase central region; Transketolase domain protein; KEGG: saq:Sare_2669 transketolase central region.


ensembl_gene_id: Caci_3261
symbol: Caci_3261
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mgi:Mflv_1267 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Caci_3263
symbol: Caci_3263
gene_biotype: protein_coding
description:
  PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: saq:Sare_0484 3-oxoacyl-(ACP) synthase III.


ensembl_gene_id: Caci_3265
symbol: Caci_3265
gene_biotype: protein_coding
description:
  (S)-2-hydroxy-acid oxidase; PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: saq:Sare_0496 (S)-2-hydroxy-acid oxidase.


ensembl_gene_id: Caci_3267
symbol: Caci_3267
gene_biotype: protein_coding
description:
  PFAM: 4'-phosphopantetheinyl transferase; KEGG: saq:Sare_0492 4'-phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily.


ensembl_gene_id: Caci_3269
symbol: Caci_3269
gene_biotype: protein_coding
description:
  PFAM: alpha/beta hydrolase fold protein-3 domain protein; KEGG: saq:Sare_2662 alpha/beta hydrolase domain- containing protein.


ensembl_gene_id: Caci_3272
symbol: Caci_3272
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: fal:FRAAL5327 MarR family transcriptional regulator.


ensembl_gene_id: Caci_3275
symbol: Caci_3275
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: nfa:nfa31920 putative serine/threonine protein kinase.


ensembl_gene_id: Caci_3277
symbol: Caci_3277
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: afw:Anae109_3622 ECF subfamily RNA polymerase sigma-24 factor.


ensembl_gene_id: Caci_3278
symbol: Caci_3278
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sen:SACE_3735 alcohol dehydrogenase, zinc- binding.


ensembl_gene_id: Caci_3282
symbol: Caci_3282
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bxe:Bxe_B0631 hypothetical protein.


ensembl_gene_id: Caci_3292
symbol: Caci_3292
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3- methyltransferase; KEGG: sco:SCO7528 hypothetical protein.


ensembl_gene_id: Caci_3293
symbol: Caci_3293
gene_biotype: protein_coding
description:
  PFAM: Helix-turn-helix type 11 domain protein; protein of unknown function UPF0074; KEGG: sgr:SGR_6851 DeoR family transcriptional regulator.


ensembl_gene_id: Caci_3296
symbol: Caci_3296
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: sma:SAV_1356 GntR family transcriptional regulator.


ensembl_gene_id: Caci_3301
symbol: Caci_3301
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: mlo:mlr1976 transcriptional regulator.


ensembl_gene_id: Caci_3302
symbol: Caci_3302
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; NAD- dependent epimerase/dehydratase; KEGG: rle:RL1385 putative short-chain dehydrogenase/oxidoreductase.


ensembl_gene_id: Caci_3307
symbol: Caci_3307
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sco:SCO4482 LysR family transcriptional regulator.


ensembl_gene_id: Caci_3312
symbol: Caci_3312
gene_biotype: protein_coding
description:
  PFAM: Polyprenyl synthetase; KEGG: sgr:SGR_6931 putative polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: Caci_3314
symbol: Caci_3314
gene_biotype: protein_coding
description:
  Putative sensor with HAMP domain; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; Nitrate and nitrite sensing domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: sgr:SGR_1525 putative sensor-like histidine kinase.


ensembl_gene_id: Caci_3316
symbol: Caci_3316
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function ATP binding; KEGG: stp:Strop_0819 protein of unknown function, ATP binding.


ensembl_gene_id: Caci_3317
symbol: Caci_3317
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: sgr:SGR_1527 putative branched-chain amino acid ABC transporter substrate-binding protein.


ensembl_gene_id: Caci_3318
symbol: Caci_3318
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: sgr:SGR_1528 putative branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Caci_3320
symbol: Caci_3320
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sgr:SGR_1529 putative branched-chain amino acid ABC transporter ATP-binding protein.


ensembl_gene_id: Caci_3321
symbol: Caci_3321
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sgr:SGR_1530 putative branched-chain amino acid ABC transporter ATP-binding protein.


ensembl_gene_id: Caci_3328
symbol: Caci_3328
gene_biotype: protein_coding
description:
  GAF sensor hybrid histidine kinase; KEGG: sma:SAV_1085 two-component system sensor kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; GAF domain protein; histidine kinase HAMP region domain protein.


ensembl_gene_id: Caci_3329
symbol: Caci_3329
gene_biotype: protein_coding
description:
  PFAM: Stage II sporulation E family protein; ANTAR domain protein; GAF domain protein; SMART: protein phosphatase 2C domain protein; KEGG: fre:Franean1_6994 putative PAS/PAC sensor protein.


ensembl_gene_id: Caci_3330
symbol: Caci_3330
gene_biotype: protein_coding
description:
  Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: fal:FRAAL0832 putative anti-sigma factor.


ensembl_gene_id: Caci_3332
symbol: Caci_3332
gene_biotype: protein_coding
description:
  PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; HI0933 family protein; KEGG: scl:sce2246 hypothetical protein.


ensembl_gene_id: Caci_3333
symbol: Caci_3333
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: aau:AAur_1207 GntR family transcriptional regulator.


ensembl_gene_id: Caci_3335
symbol: Caci_3335
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mjl:Mjls_5506 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Caci_3336
symbol: Caci_3336
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mkm:Mkms_5214 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Caci_3337
symbol: Caci_3337
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: msm:MSMEG_6521 sulfate/thiosulfate import ATP- binding protein CysA 2; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Caci_3338
symbol: Caci_3338
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: fal:FRAAL2583 hypothetical protein.


ensembl_gene_id: Caci_3340
symbol: lgt
gene_biotype: protein_coding
description:
  Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.


ensembl_gene_id: Caci_3341
symbol: Caci_3341
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: met:M446_5147 transcriptional regulator, TrmB.


ensembl_gene_id: Caci_3342
symbol: Caci_3342
gene_biotype: protein_coding
description:
  PFAM: NAD(P)H dehydrogenase (quinone); KEGG: lci:LCK_00777 putative NADPH-quinone reductase (modulator of drug activity B).


ensembl_gene_id: Caci_3343
symbol: Caci_3343
gene_biotype: protein_coding
description:
  PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: sco:SCO0838 hypothetical protein.


ensembl_gene_id: Caci_3344
symbol: Caci_3344
gene_biotype: protein_coding
description:
  KEGG: npu:Npun_F3678 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein.


ensembl_gene_id: Caci_3345
symbol: Caci_3345
gene_biotype: protein_coding
description:
  PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: nfa:nfa32760 putative monooxygenase.


ensembl_gene_id: Caci_3347
symbol: Caci_3347
gene_biotype: protein_coding
description:
  Amino acid/amide ABC transporter substrate- binding protein, HAAT family; KEGG: fra:Francci3_0852 hypothetical protein.


ensembl_gene_id: Caci_3350
symbol: Caci_3350
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: sma:SAV_7582 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Caci_3351
symbol: Caci_3351
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV_6530 ABC transporter ATP-binding protein.


ensembl_gene_id: Caci_3352
symbol: Caci_3352
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV_6529 ABC transporter ATP-binding protein.


ensembl_gene_id: Caci_3356
symbol: Caci_3356
gene_biotype: protein_coding
description:
  PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: sco:SCO7367 membrane efflux protein.


ensembl_gene_id: Caci_3359
symbol: Caci_3359
gene_biotype: protein_coding
description:
  PFAM: Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: sen:SACE_2727 oxidoreductase FAD-binding region.


ensembl_gene_id: Caci_3360
symbol: Caci_3360
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase molybdopterin binding; KEGG: fre:Franean1_5578 oxidoreductase molybdopterin binding.


ensembl_gene_id: Caci_3363
symbol: Caci_3363
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA oxidase domain protein; acyl-CoA dehydrogenase domain protein; KEGG: sen:SACE_7372 acyl-CoA oxidase.


ensembl_gene_id: Caci_3367
symbol: Caci_3367
gene_biotype: protein_coding
description:
  PFAM: NmrA family protein; NAD-dependent epimerase/dehydratase; KEGG: vvu:VV2_1416 putative NADH-flavin reductase.


ensembl_gene_id: Caci_3372
symbol: Caci_3372
gene_biotype: protein_coding
description:
  PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; KEGG: sma:SAV_955 pyruvate dehydrogenase/oxidase FAD and thiamine PPi cofactors; Belongs to the TPP enzyme family.


ensembl_gene_id: Caci_3378
symbol: Caci_3378
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: sgr:SGR_718 RNA polymerase ECF-subfamily sigma factor.


ensembl_gene_id: Caci_3381
symbol: Caci_3381
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: sma:SAV_2179 sensor-like histidine kinase.


ensembl_gene_id: Caci_3383
symbol: Caci_3383
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: msm:MSMEG_1200 serine/threonine-protein kinase PknD.


ensembl_gene_id: Caci_3391
symbol: Caci_3391
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; KEGG: dac:Daci_3104 LuxR family transcriptional regulator.


ensembl_gene_id: Caci_3395
symbol: Caci_3395
gene_biotype: protein_coding
description:
  PFAM: coagulation factor 5/8 type domain protein; APHP domain protein; Fibronectin type III domain protein; SMART: coagulation factor 5/8 type domain protein; KEGG: sgr:SGR_6622 hypothetical protein.


ensembl_gene_id: Caci_3400
symbol: Caci_3400
gene_biotype: protein_coding
description:
  TIGRFAM: RNA polymerase sigma-70 factor, sigma- B/F/G subfamily; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; Sigma-70 region 4 type 2; sigma- 70 region 4 domain protein; KEGG: sma:SAV_3013 RNA polymerase sigma factor, SigH.


ensembl_gene_id: Caci_3401
symbol: Caci_3401
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: cmi:CMM_2158 putative serine/threonine protein kinase.


ensembl_gene_id: Caci_3403
symbol: Caci_3403
gene_biotype: protein_coding
description:
  PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: sgr:SGR_3158 hypothetical protein.


ensembl_gene_id: Caci_3404
symbol: Caci_3404
gene_biotype: protein_coding
description:
  PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: sgr:SGR_3156 hypothetical protein.


ensembl_gene_id: Caci_3406
symbol: Caci_3406
gene_biotype: protein_coding
description:
  PFAM: diacylglycerol kinase catalytic region; SMART: diacylglycerol kinase catalytic region; KEGG: nca:Noca_0173 phosphoesterase, PA-phosphatase related.


ensembl_gene_id: Caci_3407
symbol: Caci_3407
gene_biotype: protein_coding
description:
  PFAM: ferredoxin-dependent glutamate synthase; KEGG: fal:FRAAL2367 putative glutamate synthase(ferredoxin); Belongs to the glutamate synthase family.


ensembl_gene_id: Caci_3408
symbol: Caci_3408
gene_biotype: protein_coding
description:
  PFAM: amino acid permease-associated region; KEGG: rrs:RoseRS_3857 amino acid permease- associated region.


ensembl_gene_id: Caci_3414
symbol: Caci_3414
gene_biotype: protein_coding
description:
  PFAM: Kelch repeat-containing protein; Kelch repeat protein; SMART: Kelch repeat-containing protein; KEGG: saq:Sare_0368 peptidase S8 and S53 subtilisin kexin sedolisin.


ensembl_gene_id: Caci_3415
symbol: Caci_3415
gene_biotype: protein_coding
description:
  PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; Formamidopyrimidine-DNA glycosylase catalytic domain protein; KEGG: sma:SAV_2501 endonuclease VIII and DNA N- glycosylase with an AP lyase activity.


ensembl_gene_id: Caci_3419
symbol: Caci_3419
gene_biotype: protein_coding
description:
  TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: mxa:MXAN_3779 non-ribosomal peptide synthetase/polyketide synthase.


ensembl_gene_id: Caci_3421
symbol: Caci_3421
gene_biotype: protein_coding
description:
  Response regulator receiver and SARP domain protein; PFAM: transcriptional activator domain; transcriptional regulator domain protein; KEGG: rca:Rcas_0060 transcriptional activator domain-containing protein.


ensembl_gene_id: Caci_3422
symbol: Caci_3422
gene_biotype: protein_coding
description:
  PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sma:SAV_849 methyltransferase.


ensembl_gene_id: Caci_3423
symbol: Caci_3423
gene_biotype: protein_coding
description:
  TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; KEGG: sma:SAV_848 non-ribosomal peptide synthetase.


ensembl_gene_id: Caci_3427
symbol: Caci_3427
gene_biotype: protein_coding
description:
  TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; KEGG: sma:SAV_839 non-ribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.


ensembl_gene_id: Caci_3431
symbol: Caci_3431
gene_biotype: protein_coding
description:
  TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: npu:Npun_CR072 amino acid adenylation domain- containing protein.


ensembl_gene_id: Caci_3432
symbol: Caci_3432
gene_biotype: protein_coding
description:
  PFAM: alpha/beta hydrolase fold protein; KEGG: mjl:Mjls_0026 hypothetical protein; Belongs to the AB hydrolase superfamily. MetX family.


ensembl_gene_id: Caci_3433
symbol: Caci_3433
gene_biotype: protein_coding
description:
  PFAM: condensation domain protein; phosphopantetheine-binding; KEGG: scl:sce8257 non-ribosomal peptide synthetase.


ensembl_gene_id: Caci_3434
symbol: Caci_3434
gene_biotype: protein_coding
description:
  PFAM: AMP-dependent synthetase and ligase; KEGG: pap:PSPA7_2121 linear gramicidin synthetase subunit C.


ensembl_gene_id: Caci_3438
symbol: Caci_3438
gene_biotype: protein_coding
description:
  TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; KEGG: scl:sce8262 non-ribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.


ensembl_gene_id: Caci_3439
symbol: Caci_3439
gene_biotype: protein_coding
description:
  TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; phosphopantetheine-binding; KEGG: ter:Tery_2968 amino acid adenylation domain- containing protein.


ensembl_gene_id: Caci_3441
symbol: Caci_3441
gene_biotype: protein_coding
description:
  PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: sme:SMc03253 putative L-proline 3-hydroxylase protein.


ensembl_gene_id: Caci_3442
symbol: Caci_3442
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: rfe:RF_0036 pyrroloquinoline quinone (coenzyme PQQ) biosynthesis protein C.


ensembl_gene_id: Caci_3444
symbol: Caci_3444
gene_biotype: protein_coding
description:
  TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: pap:PSPA7_1565 PhzF family phenazine biosynthesis protein.


ensembl_gene_id: Caci_3452
symbol: Caci_3452
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; KEGG: mab:MAB_4519c two-component LuxR family response regulator.


ensembl_gene_id: Caci_3454
symbol: Caci_3454
gene_biotype: protein_coding
description:
  TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; phosphopantetheine-binding; condensation domain protein; KEGG: scl:sce8257 non-ribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.


ensembl_gene_id: Caci_3456
symbol: Caci_3456
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Alpha-ketoglutarate-dependent dioxygenase that in vitro catalyzes the regio- and stereoselective hydroxylation of L-ornithine and L-arginine, leading to (3S)-3-hydroxy-L-ornithine and (3S)-3- hydroxy-L-arginine, respectively. Cannot use L-lysine, D-ornithine, or D-arginine as substrate.


ensembl_gene_id: Caci_3457
symbol: Caci_3457
gene_biotype: protein_coding
description:
  PFAM: aminotransferase class I and II; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: jan:Jann_1884 hypothetical protein.


ensembl_gene_id: Caci_3458
symbol: Caci_3458
gene_biotype: protein_coding
description:
  TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: mxa:MXAN_4601 non-ribosomal peptide synthase.


ensembl_gene_id: Caci_3459
symbol: Caci_3459
gene_biotype: protein_coding
description:
  PFAM: peptidase S45 penicillin amidase; KEGG: tac:Ta1462 penicillin amidase precursor related protein.


ensembl_gene_id: Caci_3464
symbol: Caci_3464
gene_biotype: protein_coding
description:
  PFAM: Carbohydrate binding family 6; glycoside hydrolase family 28; KEGG: sus:Acid_4847 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 28 family.


ensembl_gene_id: Caci_3465
symbol: Caci_3465
gene_biotype: protein_coding
description:
  PFAM: coagulation factor 5/8 type domain protein; Fibronectin type III domain protein; glucose sorbosone dehydrogenase; SMART: Fibronectin type III domain protein; KEGG: rha:RHA1_ro02468 glucose dehydrogenase.


ensembl_gene_id: Caci_3469
symbol: Caci_3469
gene_biotype: protein_coding
description:
  TIGRFAM: glycosyltransferase, MGT family; PFAM: Glycosyltransferase 28 domain; UDP- glucuronosyl/UDP-glucosyltransferase; KEGG: sma:SAV_7358 glycosyl transferase.


ensembl_gene_id: Caci_3472
symbol: Caci_3472
gene_biotype: protein_coding
description:
  PFAM: Beta-ketoacyl synthase; Acyl transferase; 4'- phosphopantetheinyl transferase; KEGG: sma:SAV_7361 modular polyketide synthase.


ensembl_gene_id: Caci_3473
symbol: Caci_3473
gene_biotype: protein_coding
description:
  PFAM: Beta-ketoacyl synthase; Acyl transferase; KR domain protein; short-chain dehydrogenase/reductase SDR; 2- nitropropane dioxygenase NPD; KEGG: sen:SACE_2342 modular polyketide synthase.


ensembl_gene_id: Caci_3474
symbol: Caci_3474
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: fal:FRAAL1908 hypothetical protein.


ensembl_gene_id: Caci_3475
symbol: Caci_3475
gene_biotype: protein_coding
description:
  PFAM: Calcium-binding EF-hand-containing protein; SMART: Calcium-binding EF-hand-containing protein; KEGG: sco:SCO0141 calcium-binding protein.


ensembl_gene_id: Caci_3476
symbol: Caci_3476
gene_biotype: protein_coding
description:
  PFAM: transcriptional regulator PadR family protein; KEGG: sma:SAV_6994 PadR-like family transcriptional regulator.


ensembl_gene_id: Caci_3477
symbol: Caci_3477
gene_biotype: protein_coding
description:
  PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: sma:SAV_6713 siderophore-interacting protein.


ensembl_gene_id: Caci_3484
symbol: Caci_3484
gene_biotype: protein_coding
description:
  PFAM: Stage II sporulation E family protein; response regulator receiver; SMART: response regulator receiver; protein phosphatase 2C domain protein; KEGG: sgr:SGR_6684 putative regulatory protein.


ensembl_gene_id: Caci_3485
symbol: Caci_3485
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; CHASE3 domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: sgr:SGR_6683 putative two-component system sensor kinase.


ensembl_gene_id: Caci_3486
symbol: Caci_3486
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: sgr:SGR_6682 putative two-component system response regulator.


ensembl_gene_id: Caci_3488
symbol: Caci_3488
gene_biotype: protein_coding
description:
  PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; KEGG: sen:SACE_5978 mycothione/glutathione reductase.


ensembl_gene_id: Caci_3489
symbol: Caci_3489
gene_biotype: protein_coding
description:
  PFAM: diacylglycerol kinase catalytic region; SMART: diacylglycerol kinase catalytic region; KEGG: sma:SAV_5015 hypothetical protein.


ensembl_gene_id: Caci_3490
symbol: Caci_3490
gene_biotype: protein_coding
description:
  PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: sco:SCO1047 integral membrane protein.


ensembl_gene_id: Caci_3491
symbol: Caci_3491
gene_biotype: protein_coding
description:
  KEGG: sgr:SGR_1140 LacI family transcriptional regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI.


ensembl_gene_id: Caci_3492
symbol: Caci_3492
gene_biotype: protein_coding
description:
  PFAM: coagulation factor 5/8 type domain protein; Ig family protein; KEGG: sco:SCO0545 secreted protein.


ensembl_gene_id: Caci_3493
symbol: Caci_3493
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 3 domain protein; coagulation factor 5/8 type domain protein; SMART: coagulation factor 5/8 type domain protein; KEGG: hypothetical protein; K05349 beta- glucosidase.


