# geneInfo

ensembl_gene_id: Caka_0001
symbol: dnaA
gene_biotype: protein_coding
description:
  Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.


ensembl_gene_id: Caka_0005
symbol: menG
gene_biotype: protein_coding
description:
  Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2).


ensembl_gene_id: Caka_0006
symbol: Caka_0006
gene_biotype: protein_coding
description:
  ATPase AAA-2 domain protein; KEGG: min:Minf_1842 ATP-dependent protease Clp, ATPase subunit; PFAM: ATPase AAA-2 domain protein; SMART: AAA ATPase; Belongs to the ClpX chaperone family.


ensembl_gene_id: Caka_0007
symbol: Caka_0007
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2654 histone family protein DNA- binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; Belongs to the bacterial histone-like protein family.


ensembl_gene_id: Caka_0008
symbol: hisS
gene_biotype: protein_coding
description:
  TIGRFAM: histidyl-tRNA synthetase; KEGG: ote:Oter_2655 histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein.


ensembl_gene_id: Caka_0010
symbol: Caka_0010
gene_biotype: protein_coding
description:
  Arsenate reductase-related protein; PFAM: arsenate reductase and related; KEGG: lbl:LBL_0020 glutaredoxin family protein; Belongs to the ArsC family.


ensembl_gene_id: Caka_0011
symbol: Caka_0011
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3553 MazG family protein; TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase.


ensembl_gene_id: Caka_0015
symbol: Caka_0015
gene_biotype: protein_coding
description:
  KEGG: sul:SYO3AOP1_0711 heavy metal translocating P- type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase.


ensembl_gene_id: Caka_0026
symbol: Caka_0026
gene_biotype: protein_coding
description:
  PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: ote:Oter_3927 cytochrome c oxidase mono-heme subunit/FixO.


ensembl_gene_id: Caka_0030
symbol: katG
gene_biotype: protein_coding
description:
  Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.


ensembl_gene_id: Caka_0031
symbol: Caka_0031
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: dze:Dd1591_2008 filamentous hemagglutinin family outer membrane protein.


ensembl_gene_id: Caka_0035
symbol: Caka_0035
gene_biotype: protein_coding
description:
  PFAM: Stress responsive alpha-beta barrel domain protein; KEGG: rbi:RB2501_04055 hypothetical protein.


ensembl_gene_id: Caka_0036
symbol: Caka_0036
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: RABEP1; rabaptin, RAB GTPase binding effector protein 1; K12480 Rab GTPase-binding effector protein 1.


ensembl_gene_id: Caka_0037
symbol: Caka_0037
gene_biotype: protein_coding
description:
  beta-Ig-H3/fasciclin; KEGG: cps:CPS_1375 putative adhesion lipoprotein; PFAM: beta-Ig-H3/fasciclin; SMART: beta-Ig-H3/fasciclin.


ensembl_gene_id: Caka_0039
symbol: Caka_0039
gene_biotype: protein_coding
description:
  KEGG: AGAP003513-PA; PFAM: Electron transfer DM13; SMART: Domain of unknown function DM13, Skeletor.


ensembl_gene_id: Caka_0040
symbol: Caka_0040
gene_biotype: protein_coding
description:
  DEAD/DEAH box helicase domain protein; KEGG: chu:CHU_3115 inducible ATP-independent RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; Belongs to the DEAD box helicase family.


ensembl_gene_id: Caka_0041
symbol: Caka_0041
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF21; CBS domain containing protein; KEGG: saz:Sama_2369 hypothetical protein.


ensembl_gene_id: Caka_0045
symbol: Caka_0045
gene_biotype: protein_coding
description:
  KEGG: gbm:Gbem_3264 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Caka_0046
symbol: Caka_0046
gene_biotype: protein_coding
description:
  TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: rba:RB4310 hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Caka_0049
symbol: Caka_0049
gene_biotype: protein_coding
description:
  PFAM: Aconitase B, N-terminal; aconitate hydratase domain protein; KEGG: dfe:Dfer_1209 aconitase B, N-terminal protein.


ensembl_gene_id: Caka_0053
symbol: Caka_0053
gene_biotype: protein_coding
description:
  PFAM: OmpA domain protein transmembrane region- containing protein; KEGG: pcr:Pcryo_2453 OmpA-like transmembrane region.


ensembl_gene_id: Caka_0056
symbol: Caka_0056
gene_biotype: protein_coding
description:
  PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; TPR repeat-containing protein; KEGG: sfu:Sfum_0219 type I phosphodiesterase/nucleotide pyrophosphatase.


ensembl_gene_id: Caka_0064
symbol: napA
gene_biotype: protein_coding
description:
  Molybdopterin oxidoreductase; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.


ensembl_gene_id: Caka_0067
symbol: Caka_0067
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: scl:sce4705 molybdopterin oxidoreductase, iron-sulfur binding subunit.


ensembl_gene_id: Caka_0068
symbol: Caka_0068
gene_biotype: protein_coding
description:
  PFAM: Polysulphide reductase NrfD; KEGG: scl:sce4706 molybdopterin oxidoreductase, membrane subunit.


ensembl_gene_id: Caka_0069
symbol: Caka_0069
gene_biotype: protein_coding
description:
  KEGG: dfe:Dfer_2184 transcriptional regulator, BadM/Rrf2 family; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074.


ensembl_gene_id: Caka_0072
symbol: Caka_0072
gene_biotype: protein_coding
description:
  Putative transcriptional regulator, Crp/Fnr family; KEGG: hypothetical protein; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding.


ensembl_gene_id: Caka_0074
symbol: Caka_0074
gene_biotype: protein_coding
description:
  Alpha-L-fucosidase; PFAM: glycoside hydrolase family 29 (alpha-L- fucosidase); KEGG: gfo:GFO_1710 alpha-L-fucosidase; SMART: glycoside hydrolase family 29 (alpha-L- fucosidase).


ensembl_gene_id: Caka_0077
symbol: Caka_0077
gene_biotype: protein_coding
description:
  PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: rlt:Rleg2_3665 mandelate racemase/muconate lactonizing protein.


ensembl_gene_id: Caka_0093
symbol: Caka_0093
gene_biotype: protein_coding
description:
  PFAM: NAD(P)H dehydrogenase (quinone); KEGG: dde:Dde_1618 flavodoxin-like fold domain- containing protein.


ensembl_gene_id: Caka_0095
symbol: Caka_0095
gene_biotype: protein_coding
description:
  PFAM: HpcH/HpaI aldolase; KEGG: sco:SCP1.302 putative lysase; Belongs to the HpcH/HpaI aldolase family.


ensembl_gene_id: Caka_0096
symbol: Caka_0096
gene_biotype: protein_coding
description:
  KEGG: bba:Bd3681 putative ATP-dependent helicase; PFAM: type III restriction protein res subunit; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.


ensembl_gene_id: Caka_0097
symbol: selO
gene_biotype: protein_coding
description:
  Protein of unknown function UPF0061; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family.


ensembl_gene_id: Caka_0106
symbol: Caka_0106
gene_biotype: protein_coding
description:
  PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; KEGG: pha:PSHAa0856 glutathione-regulated potassium- efflux system protein (K(+)/H(+) antiporter); Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.


ensembl_gene_id: Caka_0107
symbol: Caka_0107
gene_biotype: protein_coding
description:
  KEGG: abc:ACICU_00110 TPR repeat-containing SEL1 subfamily protein; PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein.


ensembl_gene_id: Caka_0108
symbol: Caka_0108
gene_biotype: protein_coding
description:
  KEGG: oih:OB2214 2-dehydro-3-deoxyphosphogluconate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase.


ensembl_gene_id: Caka_0112
symbol: Caka_0112
gene_biotype: protein_coding
description:
  PFAM: NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30; KEGG: cpb:Cphamn1_1737 NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30.


ensembl_gene_id: Caka_0114
symbol: Caka_0114
gene_biotype: protein_coding
description:
  KEGG: swd:Swoo_2095 cold-shock DNA-binding domain- containing protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein.


ensembl_gene_id: Caka_0116
symbol: Caka_0116
gene_biotype: protein_coding
description:
  Hydrolase-like protein protein of the alpha/beta-hydrolase fold family; KEGG: ppf:Pput_1619 hypothetical protein.


ensembl_gene_id: Caka_0119
symbol: Caka_0119
gene_biotype: protein_coding
description:
  Carbohydrate binding family 6; KEGG: rbi:RB2501_13599 hypothetical protein; PFAM: Carbohydrate binding family 6; SMART: cellulose binding type IV.


ensembl_gene_id: Caka_0120
symbol: Caka_0120
gene_biotype: protein_coding
description:
  Carbohydrate binding family 6; KEGG: sde:Sde_3260 hypothetical protein; PFAM: Carbohydrate binding family 6; SMART: cellulose binding type IV.


ensembl_gene_id: Caka_0122
symbol: Caka_0122
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: afw:Anae109_2327 cell surface receptor IPT/TIG domain-containing protein.


ensembl_gene_id: Caka_0128
symbol: Caka_0128
gene_biotype: protein_coding
description:
  TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: ote:Oter_4053 DNA polymerase III, alpha subunit; SMART: phosphoesterase PHP domain protein; Belongs to the DNA polymerase type-C family. DnaE2 subfamily.


ensembl_gene_id: Caka_0133
symbol: Caka_0133
gene_biotype: protein_coding
description:
  KEGG: cai:Caci_0885 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_0135
symbol: Caka_0135
gene_biotype: protein_coding
description:
  Carbohydrate binding family 6; KEGG: pat:Patl_0839 Ig-like, group 2; PFAM: Carbohydrate binding family 6; SMART: cellulose binding type IV.


ensembl_gene_id: Caka_0138
symbol: Caka_0138
gene_biotype: protein_coding
description:
  TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; KEGG: pca:Pcar_2051 superfamily II DNA/RNA helicase; SMART: helicase domain protein; DEAD-like helicase.


ensembl_gene_id: Caka_0143
symbol: Caka_0143
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: ddr:Deide_02630 putative major facilitator superfamily MFS_1 transporter.


ensembl_gene_id: Caka_0148
symbol: purL
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.


ensembl_gene_id: Caka_0154
symbol: Caka_0154
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: geo:Geob_0934 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Caka_0155
symbol: Caka_0155
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3804 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.


ensembl_gene_id: Caka_0156
symbol: Caka_0156
gene_biotype: protein_coding
description:
  KEGG: sde:Sde_1119 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Caka_0159
symbol: Caka_0159
gene_biotype: protein_coding
description:
  PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: cja:CJA_0630 hypothetical protein.


ensembl_gene_id: Caka_0160
symbol: Caka_0160
gene_biotype: protein_coding
description:
  Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.


ensembl_gene_id: Caka_0161
symbol: argD
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_0690 acetylornithine and succinylornithine aminotransferase; TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.


ensembl_gene_id: Caka_0162
symbol: argB
gene_biotype: protein_coding
description:
  Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.


ensembl_gene_id: Caka_0163
symbol: argJ
gene_biotype: protein_coding
description:
  Arginine biosynthesis bifunctional protein ArgJ; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.


ensembl_gene_id: Caka_0164
symbol: argC
gene_biotype: protein_coding
description:
  N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.


ensembl_gene_id: Caka_0165
symbol: rpsI
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein S9; KEGG: ote:Oter_0696 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.


ensembl_gene_id: Caka_0166
symbol: rplM
gene_biotype: protein_coding
description:
  Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.


ensembl_gene_id: Caka_0167
symbol: Caka_0167
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.


ensembl_gene_id: Caka_0168
symbol: smpB
gene_biotype: protein_coding
description:
  SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]


ensembl_gene_id: Caka_0169
symbol: thrB
gene_biotype: protein_coding
description:
  Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.


ensembl_gene_id: Caka_0172
symbol: Caka_0172
gene_biotype: protein_coding
description:
  KEGG: dol:Dole_0551 ammonium transporter; TIGRFAM: ammonium transporter; PFAM: ammonium transporter.


ensembl_gene_id: Caka_0173
symbol: Caka_0173
gene_biotype: protein_coding
description:
  Response regulator receiver protein; KEGG: cps:CPS_0274 sigma-54 dependent transcriptional regulator/sensory box protein.


ensembl_gene_id: Caka_0179
symbol: Caka_0179
gene_biotype: protein_coding
description:
  KEGG: cts:Ctha_2355 CheA signal transduction histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; Hpt domain protein; Signal transducing histidine kinase homodimeric; CheW domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; CheW domain protein.


ensembl_gene_id: Caka_0180
symbol: Caka_0180
gene_biotype: protein_coding
description:
  KEGG: cts:Ctha_2353 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.


ensembl_gene_id: Caka_0181
symbol: Caka_0181
gene_biotype: protein_coding
description:
  CheW protein; KEGG: sml:Smlt2256 putative purine binding chemotaxis protein CheW; PFAM: CheW domain protein; SMART: CheW domain protein.


ensembl_gene_id: Caka_0182
symbol: Caka_0182
gene_biotype: protein_coding
description:
  KEGG: pfl:PFL_5826 type IV pilus response regulator PilH; PFAM: response regulator receiver; SMART: response regulator receiver.


ensembl_gene_id: Caka_0183
symbol: Caka_0183
gene_biotype: protein_coding
description:
  KEGG: scl:sce8268 hypothetical protein; PFAM: response regulator receiver; SMART: response regulator receiver.


ensembl_gene_id: Caka_0185
symbol: alaS
gene_biotype: protein_coding
description:
  alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.


ensembl_gene_id: Caka_0187
symbol: leuB
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.


ensembl_gene_id: Caka_0188
symbol: Caka_0188
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; KEGG: ote:Oter_2855 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.


ensembl_gene_id: Caka_0189
symbol: Caka_0189
gene_biotype: protein_coding
description:
  PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: gvi:glr2376 bacterioferritin comigratory protein.


ensembl_gene_id: Caka_0190
symbol: hisG
gene_biotype: protein_coding
description:
  ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Long subfamily.


ensembl_gene_id: Caka_0191
symbol: Caka_0191
gene_biotype: protein_coding
description:
  PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: amu:Amuc_2118 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.


ensembl_gene_id: Caka_0192
symbol: Caka_0192
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2858 agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase; Belongs to the agmatine deiminase family.


ensembl_gene_id: Caka_0195
symbol: Caka_0195
gene_biotype: protein_coding
description:
  KEGG: aha:AHA_3976 exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V RecC subunit.


ensembl_gene_id: Caka_0200
symbol: Caka_0200
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1080; Kelch repeat-containing protein; KEGG: rba:RB3599 ring canal kelch protein.


ensembl_gene_id: Caka_0201
symbol: Caka_0201
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1555; KEGG: ote:Oter_1258 beta strand repeat-containing protein.


ensembl_gene_id: Caka_0202
symbol: Caka_0202
gene_biotype: protein_coding
description:
  PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; PEP-utilising protein mobile region; KEGG: dfe:Dfer_0644 pyruvate phosphate dikinase PEP/pyruvate-binding.


ensembl_gene_id: Caka_0203
symbol: Caka_0203
gene_biotype: protein_coding
description:
  Pyrrolo-quinoline quinone; KEGG: hmu:Hmuk_3300 serine/threonine protein kinase; PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone beta-propeller repeat.


ensembl_gene_id: Caka_0207
symbol: Caka_0207
gene_biotype: protein_coding
description:
  SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein; TIGRFAM: DNA topoisomerase III; KEGG: amu:Amuc_0898 DNA topoisomerase III; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein.


ensembl_gene_id: Caka_0208
symbol: lpxK
gene_biotype: protein_coding
description:
  Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).


ensembl_gene_id: Caka_0210
symbol: rsmJ
gene_biotype: protein_coding
description:
  Protein of unknown function DUF548; Specifically methylates the guanosine in position 1516 of 16S rRNA.


ensembl_gene_id: Caka_0214
symbol: Caka_0214
gene_biotype: protein_coding
description:
  PFAM: Cupin 2 conserved barrel domain protein; KEGG: cpi:Cpin_5348 transcriptional regulator, AraC family.


ensembl_gene_id: Caka_0216
symbol: Caka_0216
gene_biotype: protein_coding
description:
  Transcriptional regulator, IclR family; KEGG: phe:Phep_2760 regulatory protein IclR; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR.


ensembl_gene_id: Caka_0217
symbol: Caka_0217
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: phe:Phep_2756 extracellular solute-binding protein family 1.


ensembl_gene_id: Caka_0218
symbol: Caka_0218
gene_biotype: protein_coding
description:
  PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: phe:Phep_2755 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.


ensembl_gene_id: Caka_0219
symbol: Caka_0219
gene_biotype: protein_coding
description:
  PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: vei:Veis_2274 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.


ensembl_gene_id: Caka_0220
symbol: Caka_0220
gene_biotype: protein_coding
description:
  PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rxy:Rxyl_1748 short chain enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: Caka_0221
symbol: Caka_0221
gene_biotype: protein_coding
description:
  PFAM: Aldehyde Dehydrogenase; KEGG: sde:Sde_2645 betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: Caka_0224
symbol: Caka_0224
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sus:Acid_2222 alcohol dehydrogenase.


ensembl_gene_id: Caka_0225
symbol: Caka_0225
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ttu:TERTU_2316 oxidoreductase, short chain dehydrogenase/reductase family.


ensembl_gene_id: Caka_0226
symbol: Caka_0226
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pat:Patl_2552 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Caka_0227
symbol: Caka_0227
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; KEGG: gfo:GFO_1719 glycosyl hydrolase; Belongs to the glycosyl hydrolase 2 family.


ensembl_gene_id: Caka_0233
symbol: Caka_0233
gene_biotype: protein_coding
description:
  PFAM: transferase hexapeptide repeat containing protein; KEGG: gfo:GFO_0241 hexapaptide repeat-containing transferase.


ensembl_gene_id: Caka_0239
symbol: Caka_0239
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3587 DtxR family iron dependent repressor; PFAM: iron dependent repressor; FeoA family protein; SMART: iron dependent repressor.


ensembl_gene_id: Caka_0241
symbol: Caka_0241
gene_biotype: protein_coding
description:
  PFAM: inositol monophosphatase; KEGG: syp:SYNPCC7002_A0623 inositol-1- monophosphatase family protein.


ensembl_gene_id: Caka_0248
symbol: Caka_0248
gene_biotype: protein_coding
description:
  PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; KEGG: min:Minf_1568 sulfate permease, MFS superfamily.


ensembl_gene_id: Caka_0250
symbol: Caka_0250
gene_biotype: protein_coding
description:
  PFAM: Exonuclease RNase T and DNA polymerase III; KEGG: ote:Oter_0279 exonuclease RNase T and DNA polymerase III.


ensembl_gene_id: Caka_0256
symbol: Caka_0256
gene_biotype: protein_coding
description:
  YD repeat protein; KEGG: mba:Mbar_A3399 hypothetical protein; TIGRFAM: YD repeat protein; PFAM: Ig domain protein group 1 domain protein; YD repeat-containing protein.


ensembl_gene_id: Caka_0260
symbol: Caka_0260
gene_biotype: protein_coding
description:
  Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.


ensembl_gene_id: Caka_0261
symbol: hemE
gene_biotype: protein_coding
description:
  Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.


ensembl_gene_id: Caka_0262
symbol: hemF
gene_biotype: protein_coding
description:
  Coproporphyrinogen oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.


ensembl_gene_id: Caka_0264
symbol: Caka_0264
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_0013 signal-transduction protein; PFAM: CBS domain containing protein; SMART: CBS domain containing protein.


ensembl_gene_id: Caka_0265
symbol: Caka_0265
gene_biotype: protein_coding
description:
  Forkhead-associated protein; KEGG: scl:sce3228 sigma-54 dependent transcriptional regulator; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein.


ensembl_gene_id: Caka_0266
symbol: Caka_0266
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.


ensembl_gene_id: Caka_0267
symbol: recR
gene_biotype: protein_coding
description:
  Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.


ensembl_gene_id: Caka_0268
symbol: polA
gene_biotype: protein_coding
description:
  DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.


ensembl_gene_id: Caka_0272
symbol: Caka_0272
gene_biotype: protein_coding
description:
  TIGRFAM: phosphatidylserine decarboxylase; KEGG: rba:RB8482 phosphatidylserine decarboxylase precursor; PFAM: phosphatidylserine decarboxylase-related; Belongs to the phosphatidylserine decarboxylase family.


ensembl_gene_id: Caka_0277
symbol: Caka_0277
gene_biotype: protein_coding
description:
  PFAM: Biopolymer transport protein ExbD/TolR; KEGG: neu:NE0352 biopolymer transport protein ExbD/TolR.


ensembl_gene_id: Caka_0278
symbol: Caka_0278
gene_biotype: protein_coding
description:
  PFAM: Biopolymer transport protein ExbD/TolR; KEGG: min:Minf_0824 biopolymer transport protein ExbD/TolR.


ensembl_gene_id: Caka_0279
symbol: engB
gene_biotype: protein_coding
description:
  Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.


ensembl_gene_id: Caka_0287
symbol: Caka_0287
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: ele:Elen_0519 fumarate reductase/succinate dehydrogenase flavoprotein domain protein.


ensembl_gene_id: Caka_0329
symbol: Caka_0329
gene_biotype: protein_coding
description:
  KEGG: tbd:Tbd_1215 integron integrase; TIGRFAM: integron integrase; PFAM: integrase family protein; Belongs to the 'phage' integrase family.


ensembl_gene_id: Caka_0332
symbol: Caka_0332
gene_biotype: protein_coding
description:
  PFAM: thiamineS protein; KEGG: gox:GOX0444 bifunctional molybdenum cofactor biosynthesis protein (molybdopterin-guanine dinucleotide biosynthesis protein A and MoaD).


ensembl_gene_id: Caka_0333
symbol: mobA
gene_biotype: protein_coding
description:
  Probable molybdenum cofactor guanylyltransferase; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor.


ensembl_gene_id: Caka_0334
symbol: Caka_0334
gene_biotype: protein_coding
description:
  KEGG: hypothetical protein; TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region.


ensembl_gene_id: Caka_0336
symbol: Caka_0336
gene_biotype: protein_coding
description:
  Molybdenum cofactor synthesis domain protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.


ensembl_gene_id: Caka_0337
symbol: moaA
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.


ensembl_gene_id: Caka_0338
symbol: Caka_0338
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ote:Oter_1733 LysR family transcriptional regulator.


ensembl_gene_id: Caka_0341
symbol: Caka_0341
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rba:RB372 nitrate transport permease protein.


ensembl_gene_id: Caka_0342
symbol: Caka_0342
gene_biotype: protein_coding
description:
  KEGG: chu:CHU_1967 ABC-type nitrate transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Caka_0343
symbol: Caka_0343
gene_biotype: protein_coding
description:
  TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; KEGG: rba:RB374 nitrate transport ATP-binding protein; SMART: AAA ATPase.


ensembl_gene_id: Caka_0344
symbol: Caka_0344
gene_biotype: protein_coding
description:
  KEGG: sse:Ssed_1964 nitrate/nitrite transporter; TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1.


ensembl_gene_id: Caka_0345
symbol: Caka_0345
gene_biotype: protein_coding
description:
  KEGG: hch:HCH_05817 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; serine/threonine protein kinase.


ensembl_gene_id: Caka_0346
symbol: Caka_0346
gene_biotype: protein_coding
description:
  TIGRFAM: precorrin-3B synthase; KEGG: ote:Oter_1737 ferredoxin-nitrite reductase; PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein.


ensembl_gene_id: Caka_0347
symbol: Caka_0347
gene_biotype: protein_coding
description:
  PFAM: DMSO reductase anchor subunit (DmsC); 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: scl:sce8492 putative anaerobic reductase component.


ensembl_gene_id: Caka_0348
symbol: Caka_0348
gene_biotype: protein_coding
description:
  PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: scl:sce8491 nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.


ensembl_gene_id: Caka_0349
symbol: Caka_0349
gene_biotype: protein_coding
description:
  PFAM: FAD-binding domain protein; flavodoxin/nitric oxide synthase; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: rer:RER_56710 NADPH--sulfite reductase flavoprotein alpha-component.


ensembl_gene_id: Caka_0351
symbol: Caka_0351
gene_biotype: protein_coding
description:
  Uroporphyrinogen-III decarboxylase-like protein; KEGG: dsy:DSY4756 hypothetical protein; Belongs to the uroporphyrinogen decarboxylase family.


ensembl_gene_id: Caka_0352
symbol: Caka_0352
gene_biotype: protein_coding
description:
  PFAM: cobalamin B12-binding domain protein; Methionine synthase B12-binding module cap domain protein; KEGG: ote:Oter_3658 cobalamin B12-binding domain- containing protein.


ensembl_gene_id: Caka_0353
symbol: Caka_0353
gene_biotype: protein_coding
description:
  PFAM: Uroporphyrinogen decarboxylase (URO-D); KEGG: dat:HRM2_47380 UroD; Belongs to the uroporphyrinogen decarboxylase family.


ensembl_gene_id: Caka_0358
symbol: Caka_0358
gene_biotype: protein_coding
description:
  KEGG: dfe:Dfer_1402 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_0362
symbol: Caka_0362
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2316 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_0365
symbol: Caka_0365
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; KEGG: hor:Hore_13110 beta-mannosidase; Belongs to the glycosyl hydrolase 2 family.


ensembl_gene_id: Caka_0366
symbol: Caka_0366
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2912 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_0370
symbol: Caka_0370
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: ote:Oter_2049 Na+/melibiose symporter and related transporters-like protein.


ensembl_gene_id: Caka_0378
symbol: Caka_0378
gene_biotype: protein_coding
description:
  PFAM: sulfatase; glycoside hydrolase family 16; KEGG: gfo:GFO_1725 glycosy hydrolase family protein.


ensembl_gene_id: Caka_0380
symbol: Caka_0380
gene_biotype: protein_coding
description:
  Sugar transporter; KEGG: sde:Sde_2649 glutamate synthase, NADH/NADPH, small subunit 2; TIGRFAM: sugar transporter; PFAM: General substrate transporter; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.


ensembl_gene_id: Caka_0384
symbol: Caka_0384
gene_biotype: protein_coding
description:
  PFAM: Na+/solute symporter; KEGG: plt:Plut_1178 sodium:solute symporter family protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: Caka_0385
symbol: Caka_0385
gene_biotype: protein_coding
description:
  PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: amu:Amuc_0116 FAD dependent oxidoreductase.


ensembl_gene_id: Caka_0386
symbol: Caka_0386
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_4026 protein tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight.


ensembl_gene_id: Caka_0388
symbol: purD
gene_biotype: protein_coding
description:
  TIGRFAM: phosphoribosylamine/glycine ligase; KEGG: ote:Oter_4024 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP- grasp (A) domain; Phosphoribosylglycinamide synthetase, N- domain; Phosphoribosylglycinamide synthetase, C-domain; Belongs to the GARS family.


ensembl_gene_id: Caka_0390
symbol: Caka_0390
gene_biotype: protein_coding
description:
  PFAM: polysaccharide export protein; Soluble ligand binding domain; KEGG: ote:Oter_3242 polysaccharide export protein.


ensembl_gene_id: Caka_0391
symbol: Caka_0391
gene_biotype: protein_coding
description:
  Capsular exopolysaccharide family; KEGG: ote:Oter_3243 exopolysaccharide tyrosine- protein kinase; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.


ensembl_gene_id: Caka_0394
symbol: Caka_0394
gene_biotype: protein_coding
description:
  PFAM: transferase hexapeptide repeat containing protein; KEGG: rec:RHECIAT_CH0000844 putative fusion protein: glycosyltransferase and acetyltransferase.


ensembl_gene_id: Caka_0400
symbol: Caka_0400
gene_biotype: protein_coding
description:
  TIGRFAM: glucose-1-phosphate cytidylyltransferase; KEGG: cag:Cagg_2148 glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase.


ensembl_gene_id: Caka_0401
symbol: Caka_0401
gene_biotype: protein_coding
description:
  KEGG: mar:MAE_10890 CDP-glucose 4,6-dehydratase; TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase.


ensembl_gene_id: Caka_0402
symbol: Caka_0402
gene_biotype: protein_coding
description:
  dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.


ensembl_gene_id: Caka_0405
symbol: Caka_0405
gene_biotype: protein_coding
description:
  KEGG: ava:Ava_4844 glycosyl transferase WecB/TagA/CpsF; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; Belongs to the glycosyltransferase 26 family.


ensembl_gene_id: Caka_0409
symbol: Caka_0409
gene_biotype: protein_coding
description:
  TIGRFAM: Undecaprenyl-phosphate galactose phosphotransferase, WbaP; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: dge:Dgeo_2671 undecaprenyl-phosphate galactosephosphotransferase; PFAM: sugar transferase.


ensembl_gene_id: Caka_0410
symbol: Caka_0410
gene_biotype: protein_coding
description:
  PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: ote:Oter_3572 Mur ligase middle domain- containing protein.


ensembl_gene_id: Caka_0412
symbol: Caka_0412
gene_biotype: protein_coding
description:
  PFAM: peptidase M16 domain protein; KEGG: fjo:Fjoh_2012 peptidase M16 domain-containing protein; Belongs to the peptidase M16 family.


ensembl_gene_id: Caka_0413
symbol: Caka_0413
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ote:Oter_0497 LysR family transcriptional regulator.


ensembl_gene_id: Caka_0414
symbol: Caka_0414
gene_biotype: protein_coding
description:
  Alanine racemase domain protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.


ensembl_gene_id: Caka_0415
symbol: aroE
gene_biotype: protein_coding
description:
  Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).


ensembl_gene_id: Caka_0416
symbol: Caka_0416
gene_biotype: protein_coding
description:
  PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; KEGG: ote:Oter_0501 peptidase A24A domain- containing protein.


ensembl_gene_id: Caka_0417
symbol: Caka_0417
gene_biotype: protein_coding
description:
  KEGG: sus:Acid_3655 Cl-channel, voltage-gated family protein; PFAM: Cl- channel voltage-gated family protein; CBS domain containing protein; SMART: CBS domain containing protein.


ensembl_gene_id: Caka_0418
symbol: Caka_0418
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: ote:Oter_2927 histidine kinase; SMART: ATP-binding region ATPase domain protein.


ensembl_gene_id: Caka_0419
symbol: Caka_0419
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; KEGG: sth:STH649 two-component response regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR.


ensembl_gene_id: Caka_0435
symbol: Caka_0435
gene_biotype: protein_coding
description:
  PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: ote:Oter_2440 2-C-methyl-D-erythritol 4- phosphate cytidylyltransferase.


ensembl_gene_id: Caka_0436
symbol: pyrF
gene_biotype: protein_coding
description:
  Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.


ensembl_gene_id: Caka_0437
symbol: ispE
gene_biotype: protein_coding
description:
  4-diphosphocytidyl-2C-methyl-D-erythritolkinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.


ensembl_gene_id: Caka_0438
symbol: Caka_0438
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate-protein phosphotransferase; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).


ensembl_gene_id: Caka_0441
symbol: Caka_0441
gene_biotype: protein_coding
description:
  PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: ote:Oter_1134 6-phosphogluconate dehydrogenase NAD-binding.


ensembl_gene_id: Caka_0443
symbol: Caka_0443
gene_biotype: protein_coding
description:
  Transcriptional regulator, IclR family; KEGG: pdi:BDI_0622 transcriptional regulator; PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR.


ensembl_gene_id: Caka_0444
symbol: Caka_0444
gene_biotype: protein_coding
description:
  PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: vap:Vapar_5455 mandelate racemase/muconate lactonizing protein.


ensembl_gene_id: Caka_0445
symbol: Caka_0445
gene_biotype: protein_coding
description:
  PFAM: Aldehyde Dehydrogenase; KEGG: pat:Patl_2553 betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: Caka_0448
symbol: Caka_0448
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sde:Sde_0936 ribosomal protein L14.


ensembl_gene_id: Caka_0450
symbol: Caka_0450
gene_biotype: protein_coding
description:
  KEGG: aac:Aaci_2531 transcriptional regulator, IclR family; PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR.


ensembl_gene_id: Caka_0451
symbol: kduI
gene_biotype: protein_coding
description:
  4-deoxy-L-threo-5-hexosulose-uronateketol- isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.


ensembl_gene_id: Caka_0452
symbol: Caka_0452
gene_biotype: protein_coding
description:
  TRAP dicarboxylate transporter, DctP subunit; KEGG: ttu:TERTU_0891 TRAP transporter solute receptor, DctP family; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria.


ensembl_gene_id: Caka_0453
symbol: Caka_0453
gene_biotype: protein_coding
description:
  PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: asu:Asuc_1922 tripartite ATP-independent periplasmic transporter DctQ.


ensembl_gene_id: Caka_0454
symbol: Caka_0454
gene_biotype: protein_coding
description:
  KEGG: ttu:TERTU_1482 TRAP transporter, DctM-like subunit family protein; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit.


ensembl_gene_id: Caka_0455
symbol: Caka_0455
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3229 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; periplasmic binding protein/LacI transcriptional regulator; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_0456
symbol: Caka_0456
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rmr:Rmar_1527 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Caka_0458
symbol: Caka_0458
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 28; KEGG: phe:Phep_1710 glycoside hydrolase family 28; Belongs to the glycosyl hydrolase 28 family.


ensembl_gene_id: Caka_0460
symbol: Caka_0460
gene_biotype: protein_coding
description:
  KEGG: rbi:RB2501_13599 hypothetical protein; PFAM: PKD domain containing protein; SMART: PKD domain containing protein.


ensembl_gene_id: Caka_0463
symbol: Caka_0463
gene_biotype: protein_coding
description:
  Sialate O-acetylesterase; KEGG: rba:RB10048 sialic acid-specific 9-O- acetylesterase; PFAM: protein of unknown function DUF303 acetylesterase putative.


ensembl_gene_id: Caka_0468
symbol: Caka_0468
gene_biotype: protein_coding
description:
  PFAM: ABC-type uncharacterised transport system; KEGG: dal:Dalk_1262 ABC-type uncharacterized transport system involved in gliding motility, auxiliary component.


ensembl_gene_id: Caka_0471
symbol: Caka_0471
gene_biotype: protein_coding
description:
  KEGG: lch:Lcho_3204 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_0472
symbol: Caka_0472
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase domain protein; Twin-arginine translocation pathway, signal sequence, subgroup; KEGG: ote:Oter_3511 oxidoreductase domain- containing protein.


ensembl_gene_id: Caka_0479
symbol: Caka_0479
gene_biotype: protein_coding
description:
  Coagulation factor 5/8 type domain protein; KEGG: dfe:Dfer_2605 putative pyridine nucleotide- disulphide oxidoreductase; PFAM: coagulation factor 5/8 type domain protein; glucose-inhibited division protein A; Laminin G sub domain 2; SMART: LamG domain protein jellyroll fold domain protein.


ensembl_gene_id: Caka_0480
symbol: Caka_0480
gene_biotype: protein_coding
description:
  KEGG: aau:AAur_0604 hypothetical protein; PFAM: glycoside hydrolase family 29 (alpha-L- fucosidase); SMART: glycoside hydrolase family 29 (alpha-L- fucosidase).


ensembl_gene_id: Caka_0482
symbol: Caka_0482
gene_biotype: protein_coding
description:
  KEGG: pjd:Pjdr2_1910 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_0485
symbol: Caka_0485
gene_biotype: protein_coding
description:
  PFAM: Biopolymer transport protein ExbD/TolR; KEGG: amu:Amuc_1239 biopolymer transport protein ExbD/TolR.


ensembl_gene_id: Caka_0486
symbol: Caka_0486
gene_biotype: protein_coding
description:
  PFAM: Biopolymer transport protein ExbD/TolR; KEGG: nmu:Nmul_A1047 biopolymer transport protein ExbD/TolR.


ensembl_gene_id: Caka_0487
symbol: Caka_0487
gene_biotype: protein_coding
description:
  PFAM: MotA/TolQ/ExbB proton channel; KEGG: pmx:PERMA_1968 MotA/TolQ/ExbB proton channel family protein.


ensembl_gene_id: Caka_0492
symbol: Caka_0492
gene_biotype: protein_coding
description:
  Ig family protein; KEGG: rba:RB10300 signal peptide; PFAM: Ig family protein; Two component regulator three Y domain protein; SMART: PKD domain containing protein.


ensembl_gene_id: Caka_0493
symbol: Caka_0493
gene_biotype: protein_coding
description:
  Beta-agarase; PFAM: Ig domain protein group 2 domain protein; KEGG: pat:Patl_2341 agarase; SMART: Ig domain protein group 2 domain protein.


ensembl_gene_id: Caka_0494
symbol: Caka_0494
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pat:Patl_0229 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Caka_0497
symbol: Caka_0497
gene_biotype: protein_coding
description:
  Putative signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: ote:Oter_2927 histidine kinase; SMART: ATP-binding region ATPase domain protein.


ensembl_gene_id: Caka_0498
symbol: Caka_0498
gene_biotype: protein_coding
description:
  KEGG: hau:Haur_4778 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver.


ensembl_gene_id: Caka_0499
symbol: Caka_0499
gene_biotype: protein_coding
description:
  Coagulation factor 5/8 type domain protein; KEGG: dfe:Dfer_2605 putative pyridine nucleotide- disulphide oxidoreductase; PFAM: coagulation factor 5/8 type domain protein; glucose-inhibited division protein A; SMART: LamG domain protein jellyroll fold domain protein.


ensembl_gene_id: Caka_0503
symbol: Caka_0503
gene_biotype: protein_coding
description:
  Coagulation factor 5/8 type domain protein; KEGG: bth:BT_2458 putative pyridine nucleotide- disulphide oxidoreductase; PFAM: coagulation factor 5/8 type domain protein; glucose-inhibited division protein A; SMART: LamG domain protein jellyroll fold domain protein.


ensembl_gene_id: Caka_0506
symbol: Caka_0506
gene_biotype: protein_coding
description:
  KEGG: bgl:bglu_2g05460 hypothetical protein; PFAM: glycoside hydrolase family 29 (alpha-L- fucosidase); coagulation factor 5/8 type domain protein; SMART: glycoside hydrolase family 29 (alpha-L- fucosidase).


ensembl_gene_id: Caka_0507
symbol: Caka_0507
gene_biotype: protein_coding
description:
  Alpha-L-fucosidase; PFAM: glycoside hydrolase family 29 (alpha-L- fucosidase); KEGG: alpha-L-fucosidase; SMART: glycoside hydrolase family 29 (alpha-L- fucosidase).


ensembl_gene_id: Caka_0514
symbol: Caka_0514
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; KEGG: psa:PST_2905 transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_0515
symbol: Caka_0515
gene_biotype: protein_coding
description:
  PFAM: Dimethylmenaquinone methyltransferase; KEGG: vap:Vapar_5599 putative demethylmenaquinone methyltransferase.


ensembl_gene_id: Caka_0516
symbol: Caka_0516
gene_biotype: protein_coding
description:
  KEGG: phe:Phep_0757 sugar transporter; TIGRFAM: sugar transporter; PFAM: General substrate transporter; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.


ensembl_gene_id: Caka_0518
symbol: Caka_0518
gene_biotype: protein_coding
description:
  KEGG: nar:Saro_2430 altronate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein.


ensembl_gene_id: Caka_0519
symbol: Caka_0519
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ote:Oter_4331 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Caka_0522
symbol: Caka_0522
gene_biotype: protein_coding
description:
  Alpha-L-fucosidase; PFAM: glycoside hydrolase family 29 (alpha-L- fucosidase); KEGG: sus:Acid_7109 alpha-L-fucosidase; SMART: glycoside hydrolase family 29 (alpha-L- fucosidase).


ensembl_gene_id: Caka_0524
symbol: Caka_0524
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; KEGG: bth:BT_3667 transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_0527
symbol: Caka_0527
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: similar to Beta-hexosaminidase alpha chain precursor (N-acetyl-beta-glucosaminidase) (Beta-N- acetylhexosaminidase) (Hexosaminidase A); K12373 beta- hexosaminidase.


ensembl_gene_id: Caka_0529
symbol: Caka_0529
gene_biotype: protein_coding
description:
  KEGG: pat:Patl_0851 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_0534
symbol: Caka_0534
gene_biotype: protein_coding
description:
  KEGG: afl:Aflv_2026 transcriptional regulator, LacI family (HTH and periplasmic-binding domains); PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI.


ensembl_gene_id: Caka_0536
symbol: Caka_0536
gene_biotype: protein_coding
description:
  KEGG: bvu:BVU_4052 glycoside hydrolase family protein; PFAM: glycoside hydrolase family 29 (alpha-L- fucosidase); SMART: glycoside hydrolase family 29 (alpha-L- fucosidase).


ensembl_gene_id: Caka_0537
symbol: Caka_0537
gene_biotype: protein_coding
description:
  KEGG: phe:Phep_2693 alpha-L-fucosidase; PFAM: glycoside hydrolase family 29 (alpha-L- fucosidase); SMART: glycoside hydrolase family 29 (alpha-L- fucosidase).


ensembl_gene_id: Caka_0541
symbol: nagB
gene_biotype: protein_coding
description:
  Glucosamine-6-phosphate isomerase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion; Belongs to the glucosamine/galactosamine-6-phosphate isomerase family. NagB subfamily.


ensembl_gene_id: Caka_0545
symbol: Caka_0545
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: pjd:Pjdr2_5564 oxidoreductase domain protein.


ensembl_gene_id: Caka_0548
symbol: Caka_0548
gene_biotype: protein_coding
description:
  Transcriptional regulator with PAS/PAC sensors, AraC family; KEGG: rba:RB2684 transcription regulator; PFAM: PAS fold-4 domain protein; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; PAS domain containing protein.


ensembl_gene_id: Caka_0549
symbol: Caka_0549
gene_biotype: protein_coding
description:
  KEGG: mta:Moth_2113 two component AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_0550
symbol: Caka_0550
gene_biotype: protein_coding
description:
  PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_5864 xylose isomerase domain- containing protein.


ensembl_gene_id: Caka_0552
symbol: Caka_0552
gene_biotype: protein_coding
description:
  KEGG: efa:EF1591 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_0554
symbol: Caka_0554
gene_biotype: protein_coding
description:
  KEGG: cpi:Cpin_4160 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR.


ensembl_gene_id: Caka_0555
symbol: Caka_0555
gene_biotype: protein_coding
description:
  Putative signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: aac:Aaci_3079 histidine kinase.


ensembl_gene_id: Caka_0556
symbol: Caka_0556
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1555; KEGG: bmj:BMULJ_04389 outer membrane autotransporter barrel.


ensembl_gene_id: Caka_0558
symbol: Caka_0558
gene_biotype: protein_coding
description:
  Alpha-L-fucosidase; KEGG: dfe:Dfer_1256 hypothetical protein; PFAM: glycoside hydrolase family 65 central catalytic.


ensembl_gene_id: Caka_0585
symbol: Caka_0585
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: similar to Rho GTPase activating protein 5; K05732 Rho GTPase activating protein 5/ glucocorticoid receptor DNA binding factor 1.


ensembl_gene_id: Caka_0590
symbol: Caka_0590
gene_biotype: protein_coding
description:
  KEGG: dat:HRM2_29480 hypothetical protein; PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat.


ensembl_gene_id: Caka_0591
symbol: Caka_0591
gene_biotype: protein_coding
description:
  KEGG: fjo:Fjoh_0720 von Willebrand factor, type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A.


ensembl_gene_id: Caka_0592
symbol: Caka_0592
gene_biotype: protein_coding
description:
  TIGRFAM: conserved hypothetical protein; PFAM: von Willebrand factor type A; KEGG: rba:RB8763 BatA; SMART: von Willebrand factor type A.


ensembl_gene_id: Caka_0595
symbol: Caka_0595
gene_biotype: protein_coding
description:
  PFAM: ATPase associated with various cellular activities AAA_3; KEGG: rmr:Rmar_2551 ATPase associated with various cellular activities AAA_3.


ensembl_gene_id: Caka_0599
symbol: Caka_0599
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3229 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_0615
symbol: Caka_0615
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1549; Planctomycete cytochrome C; KEGG: rba:RB8437 cis/trans isomerase.


ensembl_gene_id: Caka_0617
symbol: Caka_0617
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: rba:RB4241 RNA polymerase sigma-E factor; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Caka_0619
symbol: Caka_0619
gene_biotype: protein_coding
description:
  Oxidoreductase (related to aryl-alcohol dehydrogenase)-like protein; KEGG: cth:Cthe_0236 aldo/keto reductase.


ensembl_gene_id: Caka_0623
symbol: Caka_0623
gene_biotype: protein_coding
description:
  Sulfite reductase (NADPH) flavoprotein, alpha chain; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH -> FAD -> FMN to the hemoprotein component.


ensembl_gene_id: Caka_0624
symbol: cysI
gene_biotype: protein_coding
description:
  Sulfite reductase (NADPH) hemoprotein, beta- component; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.


ensembl_gene_id: Caka_0634
symbol: Caka_0634
gene_biotype: protein_coding
description:
  KEGG: pat:Patl_0805 glycoside hydrolase family protein; PFAM: glycoside hydrolase family 16; Carbohydrate binding family 6; SMART: cellulose binding type IV; Parallel beta- helix repeat.


ensembl_gene_id: Caka_0636
symbol: Caka_0636
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; KEGG: rba:RB9879 transcription regulator; PFAM: helix-turn-helix- domain containing protein AraC type; PAS fold-4 domain protein; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_0643
symbol: Caka_0643
gene_biotype: protein_coding
description:
  KEGG: cyh:Cyan8802_3912 CHRD domain containing protein; PFAM: CHRD domain containing protein; SMART: CHRD domain containing protein.


ensembl_gene_id: Caka_0644
symbol: Caka_0644
gene_biotype: protein_coding
description:
  PKD domain containing protein; KEGG: svi:Svir_11080 glucose/sorbosone dehydrogenase; PFAM: PKD domain containing protein; Carbohydrate binding family 6; SMART: PKD domain containing protein; cellulose binding type IV.


ensembl_gene_id: Caka_0647
symbol: Caka_0647
gene_biotype: protein_coding
description:
  PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: amc:MADE_01786 putative TonB dependent receptor.


ensembl_gene_id: Caka_0648
symbol: Caka_0648
gene_biotype: protein_coding
description:
  KEGG: sru:SRU_0483 histidine kinase DhkJ; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Two component regulator propeller; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.


ensembl_gene_id: Caka_0649
symbol: Caka_0649
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_0959 response regulator receiver sensor signal transduction histidine kinase; PFAM: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein.


ensembl_gene_id: Caka_0651
symbol: Caka_0651
gene_biotype: protein_coding
description:
  PFAM: TrkA-C domain protein; Citrate transporter; KEGG: ote:Oter_2066 TrkA domain-containing protein.


ensembl_gene_id: Caka_0652
symbol: Caka_0652
gene_biotype: protein_coding
description:
  PFAM: Cytochrome c oxidase caa3-type, assembly factor CtaG-related; KEGG: ote:Oter_2068 membrane protein-like protein.


ensembl_gene_id: Caka_0655
symbol: Caka_0655
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2071 cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.


ensembl_gene_id: Caka_0656
symbol: Caka_0656
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2072 cytochrome c oxidase, subunit II; TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II.


ensembl_gene_id: Caka_0658
symbol: ctaB
gene_biotype: protein_coding
description:
  Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.


ensembl_gene_id: Caka_0663
symbol: Caka_0663
gene_biotype: protein_coding
description:
  PFAM: secretion protein HlyD family protein; KEGG: she:Shewmr4_3016 secretion protein HlyD family protein.


ensembl_gene_id: Caka_0671
symbol: Caka_0671
gene_biotype: protein_coding
description:
  KEGG: amu:Amuc_0856 YidE/YbjL duplication; TIGRFAM: YidE/YbjL duplication; PFAM: YidE/YbjL duplication domain protein; TrkA-C domain protein.


ensembl_gene_id: Caka_0673
symbol: Caka_0673
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: ote:Oter_2746 pyridine nucleotide-disulphide oxidoreductase dimerisation region.


ensembl_gene_id: Caka_0675
symbol: Caka_0675
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2774 DJ-1 family protein; TIGRFAM: DJ-1 family protein; PFAM: ThiJ/PfpI domain protein.


ensembl_gene_id: Caka_0677
symbol: Caka_0677
gene_biotype: protein_coding
description:
  Putative transcriptional regulator, GntR family; PFAM: aminotransferase class I and II; KEGG: tga:TGAM_1056 multiple substrate aminotransferase.


ensembl_gene_id: Caka_0678
symbol: Caka_0678
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF404; protein of unknown function DUF407; protein of unknown function DUF403; KEGG: pnu:Pnuc_1219 hypothetical protein.


ensembl_gene_id: Caka_0679
symbol: Caka_0679
gene_biotype: protein_coding
description:
  Transglutaminase domain protein; KEGG: min:Minf_0534 transglutaminase-like enzyme, putative cysteine protease; PFAM: transglutaminase domain protein; transglutaminase domain protein; SMART: transglutaminase domain protein.


ensembl_gene_id: Caka_0681
symbol: Caka_0681
gene_biotype: protein_coding
description:
  PA14 domain protein; KEGG: hau:Haur_2819 AAA ATPase containing von Willebrand factor type A (vWA) protein-like omain; PFAM: PA14 domain protein; SMART: PA14 domain protein.


ensembl_gene_id: Caka_0686
symbol: Caka_0686
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3649 isochorismate synthase; TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like.


ensembl_gene_id: Caka_0691
symbol: Caka_0691
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3196 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; Belongs to the peptidase S26 family.


ensembl_gene_id: Caka_0693
symbol: Caka_0693
gene_biotype: protein_coding
description:
  TIGRFAM: 4-alpha-glucanotransferase; KEGG: ote:Oter_3276 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77.


ensembl_gene_id: Caka_0694
symbol: Caka_0694
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2428 BadM/Rrf2 family transcriptional regulator; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074.


ensembl_gene_id: Caka_0695
symbol: gyrB
gene_biotype: protein_coding
description:
  DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: Caka_0697
symbol: gyrA
gene_biotype: protein_coding
description:
  DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: Caka_0699
symbol: vapC
gene_biotype: protein_coding
description:
  PIN domain protein family protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.


ensembl_gene_id: Caka_0701
symbol: Caka_0701
gene_biotype: protein_coding
description:
  Galactokinase; KEGG: ote:Oter_0502 galactokinase; TIGRFAM: galactokinase; PFAM: Galactokinase galactose-binding domain; GHMP kinase; GHMP kinase domain protein; Belongs to the GHMP kinase family. GalK subfamily.


ensembl_gene_id: Caka_0702
symbol: glnS
gene_biotype: protein_coding
description:
  KEGG: rba:RB1578 glutaminyl-tRNA synthetase; TIGRFAM: glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain.


ensembl_gene_id: Caka_0703
symbol: gltX
gene_biotype: protein_coding
description:
  glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.


ensembl_gene_id: Caka_0707
symbol: Caka_0707
gene_biotype: protein_coding
description:
  PFAM: Xylose isomerase domain protein TIM barrel; KEGG: dfe:Dfer_4538 xylose isomerase domain protein TIM barrel.


ensembl_gene_id: Caka_0710
symbol: Caka_0710
gene_biotype: protein_coding
description:
  TIGRFAM: hemolysin A; PFAM: RNA-binding S4 domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: ote:Oter_2371 hemolysin A; SMART: RNA-binding S4 domain protein.


ensembl_gene_id: Caka_0711
symbol: nadK
gene_biotype: protein_coding
description:
  ATP-NAD/AcoX kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.


ensembl_gene_id: Caka_0712
symbol: Caka_0712
gene_biotype: protein_coding
description:
  PFAM: Polynucleotide adenylyltransferase region; KEGG: ote:Oter_0699 polynucleotide adenylyltransferase region; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.


ensembl_gene_id: Caka_0713
symbol: Caka_0713
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3204 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_0716
symbol: Caka_0716
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: aca:ACP_3280 oxidoreductase, zinc-binding dehydrogenase family.


ensembl_gene_id: Caka_0717
symbol: Caka_0717
gene_biotype: protein_coding
description:
  PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: amt:Amet_0555 altronate oxidoreductase.


ensembl_gene_id: Caka_0718
symbol: Caka_0718
gene_biotype: protein_coding
description:
  Altronate dehydratase; KEGG: rxy:Rxyl_0536 D-galactarate dehydratase/altronate hydrolase-like protein; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein.


ensembl_gene_id: Caka_0719
symbol: Caka_0719
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: rba:RB9017 RNA polymerase sigma-H factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Caka_0720
symbol: Caka_0720
gene_biotype: protein_coding
description:
  KEGG: rba:RB11334 serine/threonine-protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: serine/threonine protein kinase; Tyrosine- protein kinase, subgroup, catalytic domain.


ensembl_gene_id: Caka_0723
symbol: Caka_0723
gene_biotype: protein_coding
description:
  Thioredoxin; KEGG: dat:HRM2_12330 TrxA2; TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; Belongs to the thioredoxin family.


ensembl_gene_id: Caka_0724
symbol: clpX
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.


ensembl_gene_id: Caka_0725
symbol: clpP
gene_biotype: protein_coding
description:
  Endopeptidase Clp; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.


ensembl_gene_id: Caka_0726
symbol: tig
gene_biotype: protein_coding
description:
  Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.


ensembl_gene_id: Caka_0727
symbol: Caka_0727
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_1261 histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein.


ensembl_gene_id: Caka_0731
symbol: aroK
gene_biotype: protein_coding
description:
  Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.


ensembl_gene_id: Caka_0733
symbol: Caka_0733
gene_biotype: protein_coding
description:
  Dihydrouridine synthase DuS; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.


ensembl_gene_id: Caka_0735
symbol: sucC
gene_biotype: protein_coding
description:
  succinyl-CoA synthetase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.


ensembl_gene_id: Caka_0736
symbol: sucD
gene_biotype: protein_coding
description:
  succinyl-CoA synthetase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.


ensembl_gene_id: Caka_0740
symbol: pckG
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate carboxykinase (GTP); Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle; Belongs to the phosphoenolpyruvate carboxykinase [GTP] family.


ensembl_gene_id: Caka_0741
symbol: Caka_0741
gene_biotype: protein_coding
description:
  PFAM: DNA gyrase/topoisomerase IV subunit A; KEGG: rbi:RB2501_15309 DNA topoisomerase IV subunit A; SMART: DNA gyrase/topoisomerase IV subunit A.


ensembl_gene_id: Caka_0745
symbol: Caka_0745
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: ribose-phosphate pyrophosphokinase; K00948 ribose-phosphate pyrophosphokinase.


ensembl_gene_id: Caka_0746
symbol: aroC
gene_biotype: protein_coding
description:
  Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.


ensembl_gene_id: Caka_0748
symbol: pyrB
gene_biotype: protein_coding
description:
  TIGRFAM: aspartate carbamoyltransferase; KEGG: ote:Oter_2512 aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.


ensembl_gene_id: Caka_0749
symbol: pyrC
gene_biotype: protein_coding
description:
  Dihydroorotase, multifunctional complex type; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.


ensembl_gene_id: Caka_0751
symbol: Caka_0751
gene_biotype: protein_coding
description:
  PFAM: domain of unknown function DUF1732; YicC domain protein; KEGG: ote:Oter_2690 hypothetical protein.


ensembl_gene_id: Caka_0755
symbol: Caka_0755
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; KEGG: xac:XAC1308 beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.


ensembl_gene_id: Caka_0758
symbol: Caka_0758
gene_biotype: protein_coding
description:
  KEGG: dge:Dgeo_2697 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI.


ensembl_gene_id: Caka_0762
symbol: lepA
gene_biotype: protein_coding
description:
  GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.


ensembl_gene_id: Caka_0763
symbol: Caka_0763
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3194 malonyl CoA-acyl carrier protein transacylase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase.


ensembl_gene_id: Caka_0764
symbol: Caka_0764
gene_biotype: protein_coding
description:
  PFAM: aminotransferase class-III; KEGG: gsu:GSU1582 adenosylmethionine--8-amino-7- oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Caka_0765
symbol: bioB
gene_biotype: protein_coding
description:
  Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.


ensembl_gene_id: Caka_0766
symbol: bioD
gene_biotype: protein_coding
description:
  Aminotransferase class I and II; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring. Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Caka_0769
symbol: Caka_0769
gene_biotype: protein_coding
description:
  KEGG: tcx:Tcr_0774 alpha amylase, catalytic region; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.


ensembl_gene_id: Caka_0771
symbol: xerD
gene_biotype: protein_coding
description:
  Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: Caka_0772
symbol: Caka_0772
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2793 amino-acid N-acetyltransferase; TIGRFAM: amino-acid N-acetyltransferase; PFAM: aspartate/glutamate/uridylate kinase; GCN5- related N-acetyltransferase; Belongs to the acetyltransferase family.


ensembl_gene_id: Caka_0774
symbol: Caka_0774
gene_biotype: protein_coding
description:
  ABC-type phosphate transport system periplasmic component-like protein; KEGG: dze:Dd1591_3104 phosphate binding protein.


ensembl_gene_id: Caka_0775
symbol: Caka_0775
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2103 two component, sigma54 specific, fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis- type; SMART: response regulator receiver; AAA ATPase.


ensembl_gene_id: Caka_0776
symbol: Caka_0776
gene_biotype: protein_coding
description:
  PFAM: ATPase associated with various cellular activities AAA_3; KEGG: cts:Ctha_0694 ATPase associated with various cellular activities AAA_3.


ensembl_gene_id: Caka_0779
symbol: Caka_0779
gene_biotype: protein_coding
description:
  TIGRFAM: conserved hypothetical protein; PFAM: von Willebrand factor type A; KEGG: dps:DP0638 hypothetical protein; SMART: von Willebrand factor type A.


ensembl_gene_id: Caka_0780
symbol: Caka_0780
gene_biotype: protein_coding
description:
  Von Willebrand factor type A; KEGG: dat:HRM2_29490 hypothetical protein; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A.


ensembl_gene_id: Caka_0785
symbol: Caka_0785
gene_biotype: protein_coding
description:
  PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: hypothetical protein.


ensembl_gene_id: Caka_0786
symbol: ahcY
gene_biotype: protein_coding
description:
  Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.


ensembl_gene_id: Caka_0788
symbol: metK
gene_biotype: protein_coding
description:
  S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.


ensembl_gene_id: Caka_0789
symbol: Caka_0789
gene_biotype: protein_coding
description:
  Alpha-L-fucosidase; PFAM: glycoside hydrolase family 29 (alpha-L- fucosidase); KEGG: pat:Patl_0823 alpha-L-fucosidase; SMART: glycoside hydrolase family 29 (alpha-L- fucosidase).


ensembl_gene_id: Caka_0790
symbol: Caka_0790
gene_biotype: protein_coding
description:
  KEGG: pjd:Pjdr2_5451 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_0794
symbol: Caka_0794
gene_biotype: protein_coding
description:
  KEGG: chl:Chy400_2704 LAO/AO transport system ATPase; TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein.


ensembl_gene_id: Caka_0795
symbol: Caka_0795
gene_biotype: protein_coding
description:
  TIGRFAM: succinate CoA transferase; KEGG: ote:Oter_4108 succinate CoA transferase; PFAM: acetyl-CoA hydrolase/transferase.


ensembl_gene_id: Caka_0796
symbol: Caka_0796
gene_biotype: protein_coding
description:
  TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; KEGG: ote:Oter_3314 sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl- CoA/oxaloacetate decarboxylase beta subunit.


ensembl_gene_id: Caka_0797
symbol: Caka_0797
gene_biotype: protein_coding
description:
  PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: amu:Amuc_0203 biotin/lipoyl attachment domain- containing protein.


ensembl_gene_id: Caka_0800
symbol: Caka_0800
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3306 methylmalonyl-CoA epimerase; TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Caka_0801
symbol: Caka_0801
gene_biotype: protein_coding
description:
  TIGRFAM: methylmalonyl-CoA mutase, large subunit; KEGG: rrs:RoseRS_0544 methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase.


ensembl_gene_id: Caka_0802
symbol: Caka_0802
gene_biotype: protein_coding
description:
  TIGRFAM: methylmalonyl-CoA mutase, large subunit; KEGG: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12- binding domain protein.


ensembl_gene_id: Caka_0803
symbol: Caka_0803
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_0098 ATP--cobalamin adenosyltransferase; TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.


ensembl_gene_id: Caka_0804
symbol: ppk
gene_biotype: protein_coding
description:
  Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.


ensembl_gene_id: Caka_0805
symbol: Caka_0805
gene_biotype: protein_coding
description:
  PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: sml:Smlt3589 putative peptidoglycan binding ErfK/YbiS/YcfS/YnhG protein.


ensembl_gene_id: Caka_0806
symbol: cysH
gene_biotype: protein_coding
description:
  Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.


ensembl_gene_id: Caka_0812
symbol: Caka_0812
gene_biotype: protein_coding
description:
  KEGG: pjd:Pjdr2_1341 two component transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_0814
symbol: Caka_0814
gene_biotype: protein_coding
description:
  KEGG: mta:Moth_0375 IclR family transcriptional regulator; PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR.


ensembl_gene_id: Caka_0815
symbol: Caka_0815
gene_biotype: protein_coding
description:
  PFAM: Dimethylmenaquinone methyltransferase; KEGG: ect:ECIAI39_0669 putative demethylmenaquinone methyltransferase.


ensembl_gene_id: Caka_0816
symbol: kduI-2
gene_biotype: protein_coding
description:
  4-deoxy-L-threo-5-hexosulose-uronateketol-isomer ase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.


ensembl_gene_id: Caka_0818
symbol: Caka_0818
gene_biotype: protein_coding
description:
  PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: sde:Sde_1267 aspartate kinase, monofunctional class.


ensembl_gene_id: Caka_0819
symbol: Caka_0819
gene_biotype: protein_coding
description:
  KEGG: sde:Sde_0934 ribosomal protein L16; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit.


ensembl_gene_id: Caka_0826
symbol: Caka_0826
gene_biotype: protein_coding
description:
  KEGG: bcv:Bcav_0800 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_0828
symbol: Caka_0828
gene_biotype: protein_coding
description:
  PFAM: Na+/solute symporter; KEGG: phe:Phep_3587 Na+/solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: Caka_0830
symbol: Caka_0830
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 43; KEGG: rba:RB5280 extracellular sucrase; Belongs to the glycosyl hydrolase 43 family.


ensembl_gene_id: Caka_0833
symbol: Caka_0833
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cps:CPS_3728 glyoxalase family protein.


ensembl_gene_id: Caka_0835
symbol: Caka_0835
gene_biotype: protein_coding
description:
  lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: Caka_0836
symbol: Caka_0836
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: ote:Oter_2086 oxidoreductase domain- containing protein.


ensembl_gene_id: Caka_0838
symbol: Caka_0838
gene_biotype: protein_coding
description:
  Sulfate adenylyltransferase, large subunit; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.


ensembl_gene_id: Caka_0839
symbol: Caka_0839
gene_biotype: protein_coding
description:
  KEGG: noc:Noc_2289 sulfate adenylyltransferase subunit 2; TIGRFAM: sulfate adenylyltransferase, small subunit; PFAM: phosphoadenosine phosphosulfate reductase.


ensembl_gene_id: Caka_0842
symbol: Caka_0842
gene_biotype: protein_coding
description:
  Cell wall hydrolase/autolysin; KEGG: ote:Oter_0587 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin.


ensembl_gene_id: Caka_0843
symbol: infC
gene_biotype: protein_coding
description:
  Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.


ensembl_gene_id: Caka_0844
symbol: Caka_0844
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_0099 PhoH family protein; PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc.


ensembl_gene_id: Caka_0845
symbol: rnc
gene_biotype: protein_coding
description:
  Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.


ensembl_gene_id: Caka_0846
symbol: mfd
gene_biotype: protein_coding
description:
  Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.


ensembl_gene_id: Caka_0847
symbol: ade
gene_biotype: protein_coding
description:
  TIGRFAM: adenine deaminase; KEGG: cpi:Cpin_1198 adenine deaminase; PFAM: amidohydrolase; Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family.


ensembl_gene_id: Caka_0848
symbol: Caka_0848
gene_biotype: protein_coding
description:
  PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: ote:Oter_2988 PpiC-type peptidyl-prolyl cis- trans isomerase.


ensembl_gene_id: Caka_0849
symbol: Caka_0849
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: dde:Dde_0553 putative transcriptional regulator.


ensembl_gene_id: Caka_0851
symbol: menB
gene_biotype: protein_coding
description:
  Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA).


ensembl_gene_id: Caka_0852
symbol: menD
gene_biotype: protein_coding
description:
  2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylic acid synthase/2-oxoglutarate decarboxylase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily.


ensembl_gene_id: Caka_0854
symbol: Caka_0854
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3859 type II secretion system protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase.


ensembl_gene_id: Caka_0856
symbol: Caka_0856
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3857 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver.


ensembl_gene_id: Caka_0857
symbol: Caka_0857
gene_biotype: protein_coding
description:
  KEGG: amu:Amuc_0171 SSS sodium solute transporter superfamily; TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: Caka_0858
symbol: Caka_0858
gene_biotype: protein_coding
description:
  PFAM: molybdopterin biosynthesis MoaE protein; KEGG: gox:GOX0443 molybdopterin (MPT) converting factor, subunit 2.


ensembl_gene_id: Caka_0861
symbol: metG
gene_biotype: protein_coding
description:
  methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.


ensembl_gene_id: Caka_0862
symbol: Caka_0862
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_4552 iron-sulfur cluster assembly accessory protein; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; Belongs to the HesB/IscA family.


ensembl_gene_id: Caka_0863
symbol: Caka_0863
gene_biotype: protein_coding
description:
  TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; KEGG: ote:Oter_4553 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; Belongs to the PdxA family.


ensembl_gene_id: Caka_0864
symbol: Caka_0864
gene_biotype: protein_coding
description:
  acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase; TIGRFAM:acyl-[acyl-carrier-protein]--UDP-N- acetylglu cosamineO-acyltransferase; KEGG: ote:Oter_4554 acyl-(acyl-carrier-protein)-- UDP-N-acetylglucosamine O-acyltransferase; PFAM: transferase hexapeptide repeat containing protein.


ensembl_gene_id: Caka_0865
symbol: Caka_0865
gene_biotype: protein_coding
description:
  KEGG: app:CAP2UW1_4252 radical SAM domain protein; PFAM: Radical SAM domain protein; cobalamin B12- binding domain protein; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: Caka_0880
symbol: asd
gene_biotype: protein_coding
description:
  Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.


ensembl_gene_id: Caka_0883
symbol: Caka_0883
gene_biotype: protein_coding
description:
  NusG antitermination factor; KEGG: min:Minf_0026 transcriptional activator RfaH, NusG family; PFAM: NGN domain protein; SMART: NGN domain protein.


ensembl_gene_id: Caka_0884
symbol: Caka_0884
gene_biotype: protein_coding
description:
  KEGG: gbm:Gbem_3181 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; response regulator receiver.


ensembl_gene_id: Caka_0889
symbol: Caka_0889
gene_biotype: protein_coding
description:
  KEGG: mxa:MXAN_4341 oxidoreductase alpha (molybdopterin) subunit; TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: Caka_0890
symbol: fdhD
gene_biotype: protein_coding
description:
  Formate dehydrogenase subunit FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.


ensembl_gene_id: Caka_0892
symbol: Caka_0892
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: gfo:GFO_1717 zinc-type alcohol dehydrogenase.


ensembl_gene_id: Caka_0897
symbol: Caka_0897
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; KEGG: rba:RB1454 xylose operon regulatory protein; PFAM: helix-turn-helix- domain containing protein AraC type; periplasmic binding protein/LacI transcriptional regulator; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_0902
symbol: trpB
gene_biotype: protein_coding
description:
  Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.


ensembl_gene_id: Caka_0904
symbol: Caka_0904
gene_biotype: protein_coding
description:
  Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.


ensembl_gene_id: Caka_0908
symbol: gpmI
gene_biotype: protein_coding
description:
  Phosphoglycerate mutase, 2,3-bisphosphoglycerate- independent; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.


ensembl_gene_id: Caka_0909
symbol: Caka_0909
gene_biotype: protein_coding
description:
  Na+/Ca+ antiporter, CaCA family; KEGG: pca:Pcar_0890 K+-dependent Na+/Ca+ exchanger related-protein; TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region.


ensembl_gene_id: Caka_0910
symbol: ileS
gene_biotype: protein_coding
description:
  isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile).


ensembl_gene_id: Caka_0912
symbol: lspA
gene_biotype: protein_coding
description:
  Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.


ensembl_gene_id: Caka_0913
symbol: rlmN
gene_biotype: protein_coding
description:
  Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.


ensembl_gene_id: Caka_0914
symbol: Caka_0914
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2985 DNA repair protein RadC; TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; Belongs to the UPF0758 family.


ensembl_gene_id: Caka_0918
symbol: Caka_0918
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: ote:Oter_1421 alcohol dehydrogenase.


ensembl_gene_id: Caka_0919
symbol: Caka_0919
gene_biotype: protein_coding
description:
  KEGG: pjd:Pjdr2_3208 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_0924
symbol: Caka_0924
gene_biotype: protein_coding
description:
  PFAM: Alkaline phosphatase; KEGG: sru:SRU_2450 alkaline phosphatase, putative; SMART: Alkaline phosphatase; Belongs to the alkaline phosphatase family.


ensembl_gene_id: Caka_0925
symbol: msrB
gene_biotype: protein_coding
description:
  TIGRFAM: methionine-R-sulfoxide reductase; KEGG: ote:Oter_1778 methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; Belongs to the MsrB Met sulfoxide reductase family.


ensembl_gene_id: Caka_0926
symbol: Caka_0926
gene_biotype: protein_coding
description:
  Transcription initiation factor protein; KEGG: TAF11; TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa; K03135 transcription initiation factor TFIID subunit D9.


ensembl_gene_id: Caka_0927
symbol: dnaX
gene_biotype: protein_coding
description:
  DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.


ensembl_gene_id: Caka_0932
symbol: glgB
gene_biotype: protein_coding
description:
  1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.


ensembl_gene_id: Caka_0934
symbol: Caka_0934
gene_biotype: protein_coding
description:
  Chromosome segregation and condensation protein ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: Caka_0937
symbol: Caka_0937
gene_biotype: protein_coding
description:
  Thioredoxin; KEGG: ote:Oter_3849 thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; Belongs to the thioredoxin family.


ensembl_gene_id: Caka_0943
symbol: Caka_0943
gene_biotype: protein_coding
description:
  Pyruvate carboxylase; KEGG: amu:Amuc_2034 methylmalonyl-CoA carboxytransferase; PFAM: Conserved carboxylase region; pyruvate carboxyltransferase.


ensembl_gene_id: Caka_0944
symbol: Caka_0944
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3359 helicase; PFAM: Helicase ATP-dependent domain protein; helicase domain protein; helicase-associated domain protein; SMART: helicase domain protein; DEAD-like helicase.


ensembl_gene_id: Caka_0946
symbol: ribB
gene_biotype: protein_coding
description:
  3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.


ensembl_gene_id: Caka_0951
symbol: Caka_0951
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_0156 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_0963
symbol: Caka_0963
gene_biotype: protein_coding
description:
  KEGG: dfe:Dfer_4330 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; periplasmic binding protein/LacI transcriptional regulator; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_0964
symbol: Caka_0964
gene_biotype: protein_coding
description:
  Transcriptional regulator, IclR family; KEGG: pdi:BDI_0622 transcriptional regulator; PFAM: Transcriptional regulator IclR; helix-turn- helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_0965
symbol: Caka_0965
gene_biotype: protein_coding
description:
  PFAM: PBS lyase HEAT domain protein repeat- containing protein; KEGG: bth:BT_4426 hypothetical protein.


ensembl_gene_id: Caka_0966
symbol: Caka_0966
gene_biotype: protein_coding
description:
  PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bur:Bcep18194_B1459 4-oxalocrotonate decarboxylase.


ensembl_gene_id: Caka_0970
symbol: Caka_0970
gene_biotype: protein_coding
description:
  KEGG: pjd:Pjdr2_3208 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_0974
symbol: Caka_0974
gene_biotype: protein_coding
description:
  Alpha-L-fucosidase; PFAM: glycoside hydrolase family 29 (alpha-L- fucosidase); KEGG: ate:Athe_2072 alpha-L-fucosidase; SMART: glycoside hydrolase family 29 (alpha-L- fucosidase).


ensembl_gene_id: Caka_0975
symbol: Caka_0975
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: rba:RB11473 hypothetical protein; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein.


ensembl_gene_id: Caka_0976
symbol: Caka_0976
gene_biotype: protein_coding
description:
  anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: pen:PSEEN2530 FecR-like transmembrane sensor.


ensembl_gene_id: Caka_0977
symbol: Caka_0977
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: hau:Haur_2819 AAA ATPase containing von Willebrand factor type A (vWA) protein-like omain.


ensembl_gene_id: Caka_0978
symbol: Caka_0978
gene_biotype: protein_coding
description:
  Glycoside hydrolase family 43; KEGG: pat:Patl_0810 carbohydrate-binding family 6 protein; PFAM: glycoside hydrolase family 43; Carbohydrate binding family 6; SMART: cellulose binding type IV.


ensembl_gene_id: Caka_0983
symbol: Caka_0983
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.


ensembl_gene_id: Caka_0985
symbol: Caka_0985
gene_biotype: protein_coding
description:
  PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: sbm:Shew185_4384 peptidase C14 caspase catalytic subunit P20.


ensembl_gene_id: Caka_0987
symbol: Caka_0987
gene_biotype: protein_coding
description:
  PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: hne:HNE_3446 ISHne3, transposase.


ensembl_gene_id: Caka_0988
symbol: Caka_0988
gene_biotype: protein_coding
description:
  6-phosphogluconolactonase; KEGG: rba:RB8031 putative 3-carboxymuconate cyclase; PFAM: Domain of unknown function DUF2394.


ensembl_gene_id: Caka_0992
symbol: Caka_0992
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; KEGG: aca:ACP_2113 two-component response regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR.


ensembl_gene_id: Caka_0993
symbol: Caka_0993
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: ote:Oter_2927 histidine kinase; SMART: ATP-binding region ATPase domain protein.


ensembl_gene_id: Caka_1002
symbol: Caka_1002
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1555; KEGG: pin:Ping_1782 gamma-D-glutamate-meso- diaminopimelate muropeptidase.


ensembl_gene_id: Caka_1003
symbol: Caka_1003
gene_biotype: protein_coding
description:
  PFAM: chalcone and stilbene synthase domain protein; KEGG: ote:Oter_3635 chalcone/stilbene synthase domain-containing protein.


ensembl_gene_id: Caka_1006
symbol: Caka_1006
gene_biotype: protein_coding
description:
  Sialate O-acetylesterase; KEGG: bvu:BVU_2697 putative sialic acid-specific acetylesterase II; PFAM: protein of unknown function DUF303 acetylesterase putative.


ensembl_gene_id: Caka_1008
symbol: Caka_1008
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 16; KEGG: Glycosyl hydrolases family 16 protein; K01199 glucan endo-1,3-beta-D-glucosidase.


ensembl_gene_id: Caka_1010
symbol: Caka_1010
gene_biotype: protein_coding
description:
  KEGG: aas:Aasi_0854 hypothetical protein; PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein.


ensembl_gene_id: Caka_1011
symbol: Caka_1011
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1214; KEGG: vfi:VF_A0491 soluble lytic murein transglycosylase.


ensembl_gene_id: Caka_1015
symbol: Caka_1015
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; KEGG: rba:RB522 xylose operon regulatory protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_1020
symbol: Caka_1020
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; KEGG: bth:BT_3609 transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_1025
symbol: Caka_1025
gene_biotype: protein_coding
description:
  PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dsa:Desal_2200 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.


ensembl_gene_id: Caka_1027
symbol: Caka_1027
gene_biotype: protein_coding
description:
  KEGG: dsa:Desal_3328 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Two component regulator three Y domain protein; Two component regulator propeller; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.


ensembl_gene_id: Caka_1031
symbol: Caka_1031
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF900 hydrolase family protein; KEGG: amr:AM1_2563 hypothetical protein.


ensembl_gene_id: Caka_1034
symbol: Caka_1034
gene_biotype: protein_coding
description:
  KEGG: ter:Tery_1590 signal peptide peptidase A; TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49.


ensembl_gene_id: Caka_1036
symbol: msrA
gene_biotype: protein_coding
description:
  Methionine sulfoxide reductase A; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.


ensembl_gene_id: Caka_1044
symbol: Caka_1044
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.


ensembl_gene_id: Caka_1048
symbol: murJ
gene_biotype: protein_coding
description:
  Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.


ensembl_gene_id: Caka_1051
symbol: xseB
gene_biotype: protein_coding
description:
  Exonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.


ensembl_gene_id: Caka_1052
symbol: dxs
gene_biotype: protein_coding
description:
  Deoxyxylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.


ensembl_gene_id: Caka_1054
symbol: hflX
gene_biotype: protein_coding
description:
  GTP-binding proten HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.


ensembl_gene_id: Caka_1058
symbol: Caka_1058
gene_biotype: protein_coding
description:
  KEGG: rxy:Rxyl_0021 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: serine/threonine protein kinase; Tyrosine- protein kinase, subgroup, catalytic domain.


ensembl_gene_id: Caka_1060
symbol: Caka_1060
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3864 phage SPO1 DNA polymerase- related protein; TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily.


ensembl_gene_id: Caka_1062
symbol: Caka_1062
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2678 ATPase; PFAM: ATPase AAA-2 domain protein; Clp domain protein; AAA ATPase central domain protein; UvrB/UvrC protein; Clp ATPase-like; SMART: AAA ATPase; Belongs to the ClpA/ClpB family.


ensembl_gene_id: Caka_1065
symbol: ilvE
gene_biotype: protein_coding
description:
  Branched-chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Caka_1066
symbol: acsA
gene_biotype: protein_coding
description:
  acetate/CoA ligase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.


ensembl_gene_id: Caka_1068
symbol: hisF
gene_biotype: protein_coding
description:
  Imidazoleglycerol phosphate synthase, cyclase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.


ensembl_gene_id: Caka_1071
symbol: Caka_1071
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2028 acetolactate synthase, large subunit, biosynthetic type; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding.


ensembl_gene_id: Caka_1073
symbol: Caka_1073
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: psa:PST_3486 maltose ABC transporter periplasmic protein.


ensembl_gene_id: Caka_1074
symbol: Caka_1074
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pmy:Pmen_3131 maltose transporter membrane protein.


ensembl_gene_id: Caka_1075
symbol: Caka_1075
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pay:PAU_00369 maltose transport system permease protein.


ensembl_gene_id: Caka_1076
symbol: Caka_1076
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_1143 ABC transporter related; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Caka_1079
symbol: Caka_1079
gene_biotype: protein_coding
description:
  PFAM: Cupin 2 conserved barrel domain protein; KEGG: dba:Dbac_0801 cupin 2 conserved barrel domain protein.


ensembl_gene_id: Caka_1081
symbol: groL
gene_biotype: protein_coding
description:
  Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.


ensembl_gene_id: Caka_1082
symbol: groS
gene_biotype: protein_coding
description:
  Chaperonin Cpn10; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.


ensembl_gene_id: Caka_1085
symbol: Caka_1085
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2046 peptidase S16 lon domain- containing protein; PFAM: peptidase S16 lon domain protein; SMART: peptidase S16 lon domain protein.


ensembl_gene_id: Caka_1091
symbol: Caka_1091
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_4190 2-oxoglutarate dehydrogenase, E1 subunit; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: Transketolase central region; dehydrogenase E1 component.


ensembl_gene_id: Caka_1092
symbol: Caka_1092
gene_biotype: protein_coding
description:
  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).


ensembl_gene_id: Caka_1093
symbol: Caka_1093
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_4192 dihydrolipoamide dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region.


ensembl_gene_id: Caka_1096
symbol: Caka_1096
gene_biotype: protein_coding
description:
  PFAM: Nucleoside-specific channel-forming protein, Tsx-like; KEGG: pag:PLES_01661 putative outer membrane protein.


ensembl_gene_id: Caka_1098
symbol: Caka_1098
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; KEGG: fsu:Fisuc_2256 NAD-dependent epimerase/dehydratase.


ensembl_gene_id: Caka_1102
symbol: Caka_1102
gene_biotype: protein_coding
description:
  KEGG: dol:Dole_0321 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; Belongs to the peptidase S26 family.


ensembl_gene_id: Caka_1104
symbol: Caka_1104
gene_biotype: protein_coding
description:
  KEGG: dma:DMR_38230 hypothetical protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.


ensembl_gene_id: Caka_1106
symbol: xseA
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.


ensembl_gene_id: Caka_1110
symbol: proA
gene_biotype: protein_coding
description:
  Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.


ensembl_gene_id: Caka_1111
symbol: Caka_1111
gene_biotype: protein_coding
description:
  KEGG: gvi:glr1374 hypothetical protein; TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein.


ensembl_gene_id: Caka_1112
symbol: Caka_1112
gene_biotype: protein_coding
description:
  Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.


ensembl_gene_id: Caka_1114
symbol: Caka_1114
gene_biotype: protein_coding
description:
  PFAM: macrophage migration inhibitory factor family protein; KEGG: cyt:cce_2084 putative macrophage migration inhibitory factor.


ensembl_gene_id: Caka_1118
symbol: Caka_1118
gene_biotype: protein_coding
description:
  TIGRFAM: serine O-acetyltransferase; KEGG: tau:Tola_2761 serine O-acetyltransferase; PFAM: serine acetyltransferase domain protein; transferase hexapeptide repeat containing protein.


ensembl_gene_id: Caka_1119
symbol: Caka_1119
gene_biotype: protein_coding
description:
  PFAM: sodium/hydrogen exchanger; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: hoh:Hoch_4262 sodium/hydrogen exchanger.


ensembl_gene_id: Caka_1122
symbol: Caka_1122
gene_biotype: protein_coding
description:
  TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; KEGG: smd:Smed_2464 2-dehydro-3- deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase.


ensembl_gene_id: Caka_1126
symbol: Caka_1126
gene_biotype: protein_coding
description:
  PFAM: Polyprenyl synthetase; KEGG: ote:Oter_3822 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: Caka_1132
symbol: Caka_1132
gene_biotype: protein_coding
description:
  TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase 7TM intracellular region; metal-dependent phosphohydrolase HD sub domain; KEGG: ote:Oter_2523 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region.


ensembl_gene_id: Caka_1133
symbol: ybeY
gene_biotype: protein_coding
description:
  Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.


ensembl_gene_id: Caka_1134
symbol: Caka_1134
gene_biotype: protein_coding
description:
  KEGG: mgm:Mmc1_2481 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase.


ensembl_gene_id: Caka_1135
symbol: Caka_1135
gene_biotype: protein_coding
description:
  Multi-sensor hybrid histidine kinase; KEGG: gvi:glr0718 two-component hybrid sensor and regulator; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; MASE1 domain protein; PAS fold-4 domain protein; GAF domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; response regulator receiver.


ensembl_gene_id: Caka_1136
symbol: Caka_1136
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3481 acetolactate synthase, small subunit; TIGRFAM: acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit-like; amino acid-binding ACT domain protein.


ensembl_gene_id: Caka_1137
symbol: ilvC
gene_biotype: protein_coding
description:
  Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.


ensembl_gene_id: Caka_1138
symbol: Caka_1138
gene_biotype: protein_coding
description:
  Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.


ensembl_gene_id: Caka_1139
symbol: Caka_1139
gene_biotype: protein_coding
description:
  uroporphyrin-III C-methyltransferase; KEGG: dps:DP1734 uroporphyrinogen III synthase/methyltransferase (HemD+CobA); TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4.


ensembl_gene_id: Caka_1140
symbol: Caka_1140
gene_biotype: protein_coding
description:
  Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.


ensembl_gene_id: Caka_1147
symbol: purC
gene_biotype: protein_coding
description:
  TIGRFAM: phosphoribosylaminoimidazole- succinocarboxamide synthase; KEGG: ote:Oter_1174 phosphoribosylaminoimidazole- succinocarboxamide synthase; PFAM: SAICAR synthetase.


ensembl_gene_id: Caka_1148
symbol: ligA
gene_biotype: protein_coding
description:
  DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.


ensembl_gene_id: Caka_1152
symbol: Caka_1152
gene_biotype: protein_coding
description:
  KEGG: ank:AnaeK_0230 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase; Pyruvate-flavodoxin oxidoreductase, EKR domain; 4Fe-4S ferredoxin iron-sulfur binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding.


ensembl_gene_id: Caka_1154
symbol: Caka_1154
gene_biotype: protein_coding
description:
  Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.


ensembl_gene_id: Caka_1155
symbol: Caka_1155
gene_biotype: protein_coding
description:
  Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; PAS fold domain protein; histidine kinase A domain protein; response regulator receiver; KEGG: tdn:Suden_0219 multi-sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; response regulator receiver.


ensembl_gene_id: Caka_1156
symbol: Caka_1156
gene_biotype: protein_coding
description:
  PFAM: 4'-phosphopantetheinyl transferase; KEGG: stp:Strop_0777 4'-phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily.


ensembl_gene_id: Caka_1159
symbol: Caka_1159
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 2; KEGG: dol:Dole_2860 putative glucosyl-3- phosphoglycerate synthase.


ensembl_gene_id: Caka_1162
symbol: Caka_1162
gene_biotype: protein_coding
description:
  TIGRFAM: ribulose-phosphate 3-epimerase; KEGG: ote:Oter_3605 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.


ensembl_gene_id: Caka_1163
symbol: Caka_1163
gene_biotype: protein_coding
description:
  PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: hau:Haur_4773 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.


ensembl_gene_id: Caka_1164
symbol: Caka_1164
gene_biotype: protein_coding
description:
  KEGG: rpt:Rpal_1442 integral membrane sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.


ensembl_gene_id: Caka_1165
symbol: Caka_1165
gene_biotype: protein_coding
description:
  Tex-like protein protein; KEGG: chu:CHU_2338 S1 RNA-binding domain-containing protein; PFAM: Tex-like protein-like; RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold.


ensembl_gene_id: Caka_1175
symbol: Caka_1175
gene_biotype: protein_coding
description:
  KEGG: gur:Gura_1482 hypothetical protein; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; SMART: DEAD-like helicase.


ensembl_gene_id: Caka_1178
symbol: Caka_1178
gene_biotype: protein_coding
description:
  PFAM: restriction modification system DNA specificity domain; KEGG: msl:Msil_1551 type I restriction enzyme.


ensembl_gene_id: Caka_1180
symbol: Caka_1180
gene_biotype: protein_coding
description:
  KEGG: radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: Caka_1182
symbol: Caka_1182
gene_biotype: protein_coding
description:
  PFAM: integrase family protein; KEGG: ote:Oter_1936 integrase family protein; Belongs to the 'phage' integrase family.


ensembl_gene_id: Caka_1183
symbol: tsaD
gene_biotype: protein_coding
description:
  Metalloendopeptidase, glycoprotease family; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.


ensembl_gene_id: Caka_1184
symbol: Caka_1184
gene_biotype: protein_coding
description:
  Carboxyl-terminal protease; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; TIGRFAM: carboxyl-terminal protease; KEGG: ote:Oter_3783 carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; Belongs to the peptidase S41A family.


ensembl_gene_id: Caka_1186
symbol: rpmB
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3785 ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.


ensembl_gene_id: Caka_1188
symbol: Caka_1188
gene_biotype: protein_coding
description:
  TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase-associated domain protein; helicase domain protein; protein of unknown function DUF1605; KEGG: sat:SYN_02852 ATP-dependent helicase; SMART: DEAD-like helicase; helicase domain protein.


ensembl_gene_id: Caka_1191
symbol: Caka_1191
gene_biotype: protein_coding
description:
  CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyl transferase; KEGG: CDP-diacylglycerol--glycerol-3-phosphate 3- phosphatidyltransferase protein; K00995 CDP- diacylglycerol--glycerol-3-phosphate 3- phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3- phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: Caka_1192
symbol: coaD
gene_biotype: protein_coding
description:
  Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.


ensembl_gene_id: Caka_1194
symbol: Caka_1194
gene_biotype: protein_coding
description:
  KEGG: rba:RB10458 RNA-binding protein; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein.


ensembl_gene_id: Caka_1195
symbol: Caka_1195
gene_biotype: protein_coding
description:
  Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.


ensembl_gene_id: Caka_1196
symbol: Caka_1196
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2652 iron-sulfur cluster assembly accessory protein; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; Belongs to the HesB/IscA family.


ensembl_gene_id: Caka_1197
symbol: Caka_1197
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2651 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: serine/threonine protein kinase; Tyrosine- protein kinase, subgroup, catalytic domain.


ensembl_gene_id: Caka_1198
symbol: Caka_1198
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2650 RNA polymerase, sigma 54 subunit, RpoN; TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor.


ensembl_gene_id: Caka_1201
symbol: Caka_1201
gene_biotype: protein_coding
description:
  PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; KEGG: ctt:CtCNB1_2514 sulphate transporter.


ensembl_gene_id: Caka_1202
symbol: Caka_1202
gene_biotype: protein_coding
description:
  Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: Caka_1203
symbol: Caka_1203
gene_biotype: protein_coding
description:
  KEGG: ttj:TTHA0473 peptide ABC transporter, ATP- binding protein; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Caka_1205
symbol: Caka_1205
gene_biotype: protein_coding
description:
  ABC transporter related protein; KEGG: min:Minf_2136 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Caka_1206
symbol: Caka_1206
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: min:Minf_2137 ABC-type dipeptide/oligopeptide/nickel transport system, permease component.


ensembl_gene_id: Caka_1207
symbol: Caka_1207
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: min:Minf_2132 ABC-type dipeptide transport system, periplasmic component.


ensembl_gene_id: Caka_1208
symbol: Caka_1208
gene_biotype: protein_coding
description:
  TIGRFAM: DNA-3-methyladenine glycosylase; KEGG: ote:Oter_3144 DNA-3-methyladenine glycosylase; PFAM: methylpurine-DNA glycosylase (MPG); Belongs to the DNA glycosylase MPG family.


ensembl_gene_id: Caka_1209
symbol: dtd
gene_biotype: protein_coding
description:
  D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family.


ensembl_gene_id: Caka_1210
symbol: Caka_1210
gene_biotype: protein_coding
description:
  TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; PAS fold-4 domain protein; KEGG: ote:Oter_3094 putative PAS/PAC sensor protein; SMART: protein phosphatase 2C domain protein.


ensembl_gene_id: Caka_1211
symbol: Caka_1211
gene_biotype: protein_coding
description:
  Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.


ensembl_gene_id: Caka_1212
symbol: Caka_1212
gene_biotype: protein_coding
description:
  Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: ote:Oter_4167 ferric uptake regulator family protein; Belongs to the Fur family.


ensembl_gene_id: Caka_1213
symbol: Caka_1213
gene_biotype: protein_coding
description:
  TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; KEGG: ote:Oter_4168 FeS assembly ATPase SufC; SMART: AAA ATPase.


ensembl_gene_id: Caka_1214
symbol: Caka_1214
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_4169 FeS assembly protein SufB; TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein.


ensembl_gene_id: Caka_1215
symbol: Caka_1215
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_4170 FeS assembly protein SufD; TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein.


ensembl_gene_id: Caka_1216
symbol: Caka_1216
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_4171 FeS assembly SUF system protein SufT; TIGRFAM: FeS assembly SUF system protein SufT; PFAM: protein of unknown function DUF59.


ensembl_gene_id: Caka_1219
symbol: Caka_1219
gene_biotype: protein_coding
description:
  ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.


ensembl_gene_id: Caka_1220
symbol: Caka_1220
gene_biotype: protein_coding
description:
  PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; KEGG: sfu:Sfum_0219 type I phosphodiesterase/nucleotide pyrophosphatase.


ensembl_gene_id: Caka_1224
symbol: Caka_1224
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF95 transmembrane; KEGG: dal:Dalk_0975 protein of unknown function DUF95 transmembrane.


ensembl_gene_id: Caka_1226
symbol: Caka_1226
gene_biotype: protein_coding
description:
  PFAM: ATPase associated with various cellular activities AAA_3; KEGG: dal:Dalk_0973 ATPase associated with various cellular activities AAA_3.


ensembl_gene_id: Caka_1236
symbol: Caka_1236
gene_biotype: protein_coding
description:
  Transcriptional repressor, LexA family; Represses a number of genes involved in the response to DNA damage (SOS response).


ensembl_gene_id: Caka_1237
symbol: Caka_1237
gene_biotype: protein_coding
description:
  LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.


ensembl_gene_id: Caka_1238
symbol: Caka_1238
gene_biotype: protein_coding
description:
  KEGG: tko:TK0332 allophanate hydrolase subunit 2; PFAM: Allophanate hydrolase subunit 2; SMART: Allophanate hydrolase subunit 2.


ensembl_gene_id: Caka_1239
symbol: Caka_1239
gene_biotype: protein_coding
description:
  KEGG: cag:Cagg_1957 allophanate hydrolase subunit 1; PFAM: Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 1.


ensembl_gene_id: Caka_1240
symbol: Caka_1240
gene_biotype: protein_coding
description:
  Response regulator receiver protein; KEGG: maq:Maqu_2826 two component, sigma54 specific, fis family transcriptional regulator.


ensembl_gene_id: Caka_1244
symbol: Caka_1244
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 28; Glycosyltransferase 28 domain; KEGG: hau:Haur_4524 glycosyl transferase family protein.


ensembl_gene_id: Caka_1248
symbol: Caka_1248
gene_biotype: protein_coding
description:
  PFAM: electron transport protein SCO1/SenC; KEGG: ote:Oter_2077 electron transport protein SCO1/SenC.


ensembl_gene_id: Caka_1249
symbol: Caka_1249
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1555; KEGG: sit:TM1040_3767 hemolysin-type calcium- binding region.


ensembl_gene_id: Caka_1253
symbol: Caka_1253
gene_biotype: protein_coding
description:
  Beta-agarase; PFAM: Carbohydrate binding family 6; KEGG: pat:Patl_0839 Ig-like, group 2; SMART: cellulose binding type IV.


ensembl_gene_id: Caka_1256
symbol: Caka_1256
gene_biotype: protein_coding
description:
  KEGG: cag:Cagg_2254 transglutaminase domain protein; PFAM: transglutaminase domain protein; transglutaminase domain protein; SMART: transglutaminase domain protein.


ensembl_gene_id: Caka_1258
symbol: Caka_1258
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: pvi:Cvib_1220 hypothetical protein.


ensembl_gene_id: Caka_1260
symbol: Caka_1260
gene_biotype: protein_coding
description:
  PFAM: Mammalian cell entry related domain protein; KEGG: sru:SRU_0342 paraquant-inducible protein B.


ensembl_gene_id: Caka_1262
symbol: Caka_1262
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF140; KEGG: sat:SYN_02070 ABC transporter permease protein; Belongs to the MlaE permease family.


ensembl_gene_id: Caka_1263
symbol: Caka_1263
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_4626 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase.


ensembl_gene_id: Caka_1266
symbol: Caka_1266
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3781 DEAD/DEAH box helicase domain- containing protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.


ensembl_gene_id: Caka_1269
symbol: priA
gene_biotype: protein_coding
description:
  Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.


ensembl_gene_id: Caka_1270
symbol: Caka_1270
gene_biotype: protein_coding
description:
  KEGG: hau:Haur_1830 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.


ensembl_gene_id: Caka_1272
symbol: Caka_1272
gene_biotype: protein_coding
description:
  Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: ote:Oter_2791 ferric uptake regulator family protein; Belongs to the Fur family.


ensembl_gene_id: Caka_1273
symbol: rplU
gene_biotype: protein_coding
description:
  Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.


ensembl_gene_id: Caka_1274
symbol: rpmA
gene_biotype: protein_coding
description:
  KEGG: amu:Amuc_0485 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.


ensembl_gene_id: Caka_1280
symbol: Caka_1280
gene_biotype: protein_coding
description:
  Helix-turn-helix domain protein; KEGG: fnu:FN1997 transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.


ensembl_gene_id: Caka_1283
symbol: Caka_1283
gene_biotype: protein_coding
description:
  PFAM: histone family protein DNA-binding protein; KEGG: mei:Msip34_1458 histone family protein DNA- binding protein.


ensembl_gene_id: Caka_1289
symbol: purH
gene_biotype: protein_coding
description:
  SMART: AICARFT/IMPCHase bienzyme formylation region; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; KEGG: ote:Oter_3182 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein.


ensembl_gene_id: Caka_1292
symbol: Caka_1292
gene_biotype: protein_coding
description:
  KEGG: dal:Dalk_1389 conserved repeat domain protein; TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11.


ensembl_gene_id: Caka_1294
symbol: Caka_1294
gene_biotype: protein_coding
description:
  KEGG: dol:Dole_3252 hypothetical protein; TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11.


ensembl_gene_id: Caka_1295
symbol: Caka_1295
gene_biotype: protein_coding
description:
  KEGG: sal:Sala_1325 hypothetical protein; TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11.


ensembl_gene_id: Caka_1296
symbol: Caka_1296
gene_biotype: protein_coding
description:
  Amidophosphoribosyltransferase; KEGG: ote:Oter_3710 glutamine amidotransferase class-II; PFAM: hydrogenase large subunit domain protein; glutamine amidotransferase class-II.


ensembl_gene_id: Caka_1297
symbol: Caka_1297
gene_biotype: protein_coding
description:
  KEGG: mba:Mbar_A0858 cation efflux system protein; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.


ensembl_gene_id: Caka_1298
symbol: Caka_1298
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: fal:FRAAL5220 bifunctional 3,4-dihydroxy-2- butanone 4-phosphate synthase/GTP cyclohydrolase II protein.


ensembl_gene_id: Caka_1299
symbol: Caka_1299
gene_biotype: protein_coding
description:
  PFAM: RNA-metabolising metallo-beta-lactamase; KEGG: ote:Oter_3180 beta-lactamase domain- containing protein.


ensembl_gene_id: Caka_1301
symbol: Caka_1301
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3360 GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain protein.


ensembl_gene_id: Caka_1304
symbol: Caka_1304
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ote:Oter_2643 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Caka_1305
symbol: Caka_1305
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2642 sigma 54 modulation protein/ribosomal protein S30EA; TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA.


ensembl_gene_id: Caka_1307
symbol: Caka_1307
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_4247 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR.


ensembl_gene_id: Caka_1310
symbol: Caka_1310
gene_biotype: protein_coding
description:
  Hpt sensor hybrid histidine kinase; KEGG: ote:Oter_4246 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Two component regulator three Y domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver.


ensembl_gene_id: Caka_1312
symbol: Caka_1312
gene_biotype: protein_coding
description:
  PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: ote:Oter_3833 type II secretion system protein E.


ensembl_gene_id: Caka_1313
symbol: Caka_1313
gene_biotype: protein_coding
description:
  Putative two component, sigma54 specific, transcriptional regulator, Fis family; KEGG: saz:Sama_3243 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver.


ensembl_gene_id: Caka_1314
symbol: Caka_1314
gene_biotype: protein_coding
description:
  Putative two component, sigma54 specific, transcriptional regulator, Fis family; KEGG: tde:TDE1969 sigma-54 dependent transcriptional regulator/response regulator; PFAM: response regulator receiver; SMART: response regulator receiver.


ensembl_gene_id: Caka_1316
symbol: Caka_1316
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2338 protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein.


ensembl_gene_id: Caka_1317
symbol: Caka_1317
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.


ensembl_gene_id: Caka_1319
symbol: Caka_1319
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Caka_1320
symbol: Caka_1320
gene_biotype: protein_coding
description:
  Pseudouridine synthase; KEGG: ote:Oter_3791 RNA-binding S4 domain- containing protein; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: Caka_1322
symbol: folD
gene_biotype: protein_coding
description:
  Methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.


ensembl_gene_id: Caka_1324
symbol: Caka_1324
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3794 response regulator receiver sensor signal transduction histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein.


ensembl_gene_id: Caka_1325
symbol: proC
gene_biotype: protein_coding
description:
  Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.


ensembl_gene_id: Caka_1327
symbol: thyA
gene_biotype: protein_coding
description:
  Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis.


ensembl_gene_id: Caka_1328
symbol: Caka_1328
gene_biotype: protein_coding
description:
  Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.


ensembl_gene_id: Caka_1329
symbol: Caka_1329
gene_biotype: protein_coding
description:
  Putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; VanZ family protein; KEGG: noc:Noc_2830 hypothetical protein.


ensembl_gene_id: Caka_1333
symbol: Caka_1333
gene_biotype: protein_coding
description:
  PFAM: domain of unknown function DUF1730; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: acr:Acry_1342 hypothetical protein.


ensembl_gene_id: Caka_1336
symbol: Caka_1336
gene_biotype: protein_coding
description:
  PFAM: band 7 protein; KEGG: cyb:CYB_1745 stomatin/podocin/band 7/nephrosis.2/SPFH (stomatin) family protein.


ensembl_gene_id: Caka_1337
symbol: Caka_1337
gene_biotype: protein_coding
description:
  KEGG: phe:Phep_3475 DNA topoisomerase type IIA subunit B region 2 domain protein; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein.


ensembl_gene_id: Caka_1340
symbol: rnr
gene_biotype: protein_coding
description:
  Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.


ensembl_gene_id: Caka_1341
symbol: Caka_1341
gene_biotype: protein_coding
description:
  PFAM: Citrate transporter; TrkA-C domain protein; KEGG: pen:PSEEN2261 sodium/sulfate symporter family protein.


ensembl_gene_id: Caka_1344
symbol: Caka_1344
gene_biotype: protein_coding
description:
  KEGG: dra:DR_B0074 1-phosphofructokinase; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; Belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: Caka_1345
symbol: Caka_1345
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_4349 DEAD/DEAH box helicase domain- containing protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.


ensembl_gene_id: Caka_1346
symbol: Caka_1346
gene_biotype: protein_coding
description:
  Transcriptional regulator, ArsR family; KEGG: amt:Amet_0981 regulatory protein, ArsR; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR.


ensembl_gene_id: Caka_1347
symbol: Caka_1347
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: min:Minf_1837 lactoylglutathione lyase or related enzyme.


ensembl_gene_id: Caka_1349
symbol: Caka_1349
gene_biotype: protein_coding
description:
  PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: maq:Maqu_3853 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.


ensembl_gene_id: Caka_1353
symbol: pfp
gene_biotype: protein_coding
description:
  Phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP- PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions.


ensembl_gene_id: Caka_1356
symbol: Caka_1356
gene_biotype: protein_coding
description:
  PFAM: pseudouridine synthase; KEGG: bmr:BMI_I1672 ribosomal large subunit pseudouridine synthase, RluD subfamily; Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: Caka_1360
symbol: Caka_1360
gene_biotype: protein_coding
description:
  PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ote:Oter_3905 biopolymer transport protein ExbD/TolR.


ensembl_gene_id: Caka_1362
symbol: Caka_1362
gene_biotype: protein_coding
description:
  PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; KEGG: ote:Oter_2605 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein.


ensembl_gene_id: Caka_1363
symbol: Caka_1363
gene_biotype: protein_coding
description:
  KEGG: glo:Glov_2434 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver.


ensembl_gene_id: Caka_1365
symbol: Caka_1365
gene_biotype: protein_coding
description:
  PFAM: doubled CXXCH domain protein; KEGG: abo:ABO_0856 hypothetical protein; Belongs to the cytochrome c-552 family.


ensembl_gene_id: Caka_1366
symbol: Caka_1366
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rba:RB1902 nitrite reductase [NAD(P)H] large subunit.


ensembl_gene_id: Caka_1372
symbol: Caka_1372
gene_biotype: protein_coding
description:
  KEGG: bph:Bphy_0937 transcriptional regulator, TrmB; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074.


ensembl_gene_id: Caka_1375
symbol: Caka_1375
gene_biotype: protein_coding
description:
  PFAM: Cupin 2 conserved barrel domain protein; KEGG: dsa:Desal_0547 cupin 2 conserved barrel domain protein.


ensembl_gene_id: Caka_1376
symbol: Caka_1376
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_4035 ArsR family transcriptional regulator; PFAM: Methyltransferase type 11; regulatory protein ArsR; SMART: regulatory protein ArsR.


ensembl_gene_id: Caka_1377
symbol: Caka_1377
gene_biotype: protein_coding
description:
  PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: bpu:BPUM_2818 thiol-disulphide dehydrogenase.


ensembl_gene_id: Caka_1380
symbol: Caka_1380
gene_biotype: protein_coding
description:
  KEGG: jan:Jann_3689 Na+/H+ antiporter subunit; TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit.


ensembl_gene_id: Caka_1381
symbol: Caka_1381
gene_biotype: protein_coding
description:
  PFAM: multiple resistance and pH regulation protein F; KEGG: dsh:Dshi_0733 multiple resistance and pH regulation protein F.


ensembl_gene_id: Caka_1384
symbol: Caka_1384
gene_biotype: protein_coding
description:
  PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: gsu:GSU2342 putative monovalent cation/H+ antiporter subunit C.


ensembl_gene_id: Caka_1385
symbol: Caka_1385
gene_biotype: protein_coding
description:
  PFAM: Na+/H+ antiporter MnhB subunit-related protein; KEGG: paa:Paes_0095 putative monovalent cation/H+ antiporter subunit B.


ensembl_gene_id: Caka_1386
symbol: Caka_1386
gene_biotype: protein_coding
description:
  PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; KEGG: aeh:Mlg_2090 putative monovalent cation/H+ antiporter subunit A.


ensembl_gene_id: Caka_1388
symbol: leuS
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3868 leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: Caka_1393
symbol: Caka_1393
gene_biotype: protein_coding
description:
  TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: ote:Oter_4187 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.


ensembl_gene_id: Caka_1398
symbol: Caka_1398
gene_biotype: protein_coding
description:
  KEGG: vvy:VVA0008 signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.


ensembl_gene_id: Caka_1402
symbol: Caka_1402
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF980; KEGG: hch:HCH_04184 hypothetical protein; Belongs to the MtfA family.


ensembl_gene_id: Caka_1407
symbol: gatB
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.


ensembl_gene_id: Caka_1408
symbol: gatA
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) amidotransferase, A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).


ensembl_gene_id: Caka_1409
symbol: gatC
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.


ensembl_gene_id: Caka_1411
symbol: Caka_1411
gene_biotype: protein_coding
description:
  KEGG: sne:SPN23F_17820 cell wall surface anchored protein; TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein.


ensembl_gene_id: Caka_1413
symbol: pheT
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2358 phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.


ensembl_gene_id: Caka_1414
symbol: pheS
gene_biotype: protein_coding
description:
  TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; KEGG: ote:Oter_2356 phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.


ensembl_gene_id: Caka_1415
symbol: Caka_1415
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_0680 two component, sigma54 specific, fis family transcriptional regulator; PFAM: response regulator receiver; SMART: response regulator receiver.


ensembl_gene_id: Caka_1416
symbol: Caka_1416
gene_biotype: protein_coding
description:
  PFAM: pseudouridine synthase; KEGG: hap:HAPS_0709 tRNA pseudouridine synthase C, pseudouridylate synthase, 23S RNA-specific.


ensembl_gene_id: Caka_1417
symbol: Caka_1417
gene_biotype: protein_coding
description:
  Histidine kinase; KEGG: hoh:Hoch_3203 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver.


ensembl_gene_id: Caka_1419
symbol: rsfS
gene_biotype: protein_coding
description:
  Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.


ensembl_gene_id: Caka_1420
symbol: nadD
gene_biotype: protein_coding
description:
  Nicotinate (nicotinamide) nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).


ensembl_gene_id: Caka_1423
symbol: xylA
gene_biotype: protein_coding
description:
  TIGRFAM: xylose isomerase; KEGG: rba:RB2658 xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family.


ensembl_gene_id: Caka_1426
symbol: Caka_1426
gene_biotype: protein_coding
description:
  KEGG: fjo:Fjoh_4625 nitrite reductase (NAD(P)H), small subunit; TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] iron-sulphur domain.


ensembl_gene_id: Caka_1427
symbol: Caka_1427
gene_biotype: protein_coding
description:
  KEGG: ttu:TERTU_2948 nitrite reductase [NAD(P)H], large subunit; TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; nitrite/sulfite reductase hemoprotein beta- component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region.


ensembl_gene_id: Caka_1428
symbol: Caka_1428
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding; helix-turn-helix- domain containing protein AraC type; KEGG: shn:Shewana3_2691 DNA-O6-methylguanine-- protein-cysteine S-methyltransferase / transcriptional regulator Ada; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_1429
symbol: Caka_1429
gene_biotype: protein_coding
description:
  Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.


ensembl_gene_id: Caka_1430
symbol: ackA
gene_biotype: protein_coding
description:
  Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.


ensembl_gene_id: Caka_1431
symbol: Caka_1431
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; KEGG: tye:THEYE_A0183 two component system histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.


ensembl_gene_id: Caka_1434
symbol: Caka_1434
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3192 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E.


ensembl_gene_id: Caka_1435
symbol: dapA
gene_biotype: protein_coding
description:
  Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).


ensembl_gene_id: Caka_1436
symbol: dapB
gene_biotype: protein_coding
description:
  Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.


ensembl_gene_id: Caka_1437
symbol: ruvA
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.


ensembl_gene_id: Caka_1439
symbol: Caka_1439
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3187 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein.


ensembl_gene_id: Caka_1442
symbol: accA
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.


ensembl_gene_id: Caka_1444
symbol: Caka_1444
gene_biotype: protein_coding
description:
  PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ote:Oter_2783 endonuclease/exonuclease/phosphatase.


ensembl_gene_id: Caka_1447
symbol: Caka_1447
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3085 type II secretion system protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase.


ensembl_gene_id: Caka_1448
symbol: Caka_1448
gene_biotype: protein_coding
description:
  TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: ote:Oter_3084 twitching motility protein; SMART: AAA ATPase.


ensembl_gene_id: Caka_1449
symbol: Caka_1449
gene_biotype: protein_coding
description:
  PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: ote:Oter_3083 type II secretion system protein E.


ensembl_gene_id: Caka_1450
symbol: rho
gene_biotype: protein_coding
description:
  Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.


ensembl_gene_id: Caka_1451
symbol: coaE
gene_biotype: protein_coding
description:
  dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.


ensembl_gene_id: Caka_1452
symbol: Caka_1452
gene_biotype: protein_coding
description:
  TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; KEGG: ote:Oter_3079 Mg chelatase, subunit ChlI; SMART: AAA ATPase.


ensembl_gene_id: Caka_1453
symbol: Caka_1453
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3186 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR.


ensembl_gene_id: Caka_1454
symbol: Caka_1454
gene_biotype: protein_coding
description:
  PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: ote:Oter_2434 cobalamin (vitamin B12) biosynthesis CbiX protein.


ensembl_gene_id: Caka_1456
symbol: Caka_1456
gene_biotype: protein_coding
description:
  5-carboxymethyl-2-hydroxymuconateDelta- isomerase; KEGG: dat:HRM2_37700 HpcE; PFAM: fumarylacetoacetate (FAA) hydrolase.


ensembl_gene_id: Caka_1459
symbol: Caka_1459
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.


ensembl_gene_id: Caka_1460
symbol: Caka_1460
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_4074 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; Transcriptional regulator, histidine kinase sensor-like; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_1463
symbol: Caka_1463
gene_biotype: protein_coding
description:
  TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; cytochrome c oxidase, cbb3-type, subunit II; KEGG: ote:Oter_4077 cytochrome c oxidase, cbb3- type, subunit I; PFAM: cytochrome C oxidase mono-heme subunit/FixO; cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.


ensembl_gene_id: Caka_1466
symbol: Caka_1466
gene_biotype: protein_coding
description:
  TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: ote:Oter_4080 cytochrome c oxidase accessory protein CcoG.


ensembl_gene_id: Caka_1468
symbol: Caka_1468
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_4082 copper-exporting ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase.


ensembl_gene_id: Caka_1469
symbol: lipB
gene_biotype: protein_coding
description:
  Lipoate-protein ligase B; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.


ensembl_gene_id: Caka_1470
symbol: lipA
gene_biotype: protein_coding
description:
  Lipoic acid synthetase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.


ensembl_gene_id: Caka_1472
symbol: pyrD
gene_biotype: protein_coding
description:
  Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.


ensembl_gene_id: Caka_1478
symbol: Caka_1478
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.


ensembl_gene_id: Caka_1479
symbol: Caka_1479
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family.


ensembl_gene_id: Caka_1480
symbol: Caka_1480
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_1432 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2.


ensembl_gene_id: Caka_1483
symbol: Caka_1483
gene_biotype: protein_coding
description:
  PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: mno:Mnod_1091 cobalamin synthesis protein P47K.


ensembl_gene_id: Caka_1486
symbol: Caka_1486
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3113 putative alpha- isopropylmalate/homocitrate synthase family transferase; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: LeuA allosteric (dimerisation) domain; pyruvate carboxyltransferase; Belongs to the alpha-IPM synthase/homocitrate synthase family.


ensembl_gene_id: Caka_1487
symbol: Caka_1487
gene_biotype: protein_coding
description:
  PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: tgr:Tgr7_0241 TonB-dependent receptor.


ensembl_gene_id: Caka_1488
symbol: Caka_1488
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; KEGG: sru:SRU_0918 nucleoside-diphosphate-sugar epimerase.


ensembl_gene_id: Caka_1490
symbol: fusA
gene_biotype: protein_coding
description:
  Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]


ensembl_gene_id: Caka_1499
symbol: Caka_1499
gene_biotype: protein_coding
description:
  KEGG: dal:Dalk_0072 conserved repeat domain protein; TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11.


ensembl_gene_id: Caka_1503
symbol: Caka_1503
gene_biotype: protein_coding
description:
  Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.


ensembl_gene_id: Caka_1506
symbol: dinB
gene_biotype: protein_coding
description:
  DNA-directed DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.


ensembl_gene_id: Caka_1509
symbol: Caka_1509
gene_biotype: protein_coding
description:
  PFAM: Excinuclease ABC C subunit domain protein; KEGG: shn:Shewana3_0136 excinuclease ABC subunit C.


ensembl_gene_id: Caka_1511
symbol: trpA
gene_biotype: protein_coding
description:
  Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.


ensembl_gene_id: Caka_1512
symbol: Caka_1512
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF147; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: ote:Oter_4591 hypothetical protein.


ensembl_gene_id: Caka_1513
symbol: nuoA
gene_biotype: protein_coding
description:
  NADH-ubiquinone/plastoquinone oxidoreductase chain 3; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family.


ensembl_gene_id: Caka_1516
symbol: dnaG
gene_biotype: protein_coding
description:
  DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family.


ensembl_gene_id: Caka_1517
symbol: sigA
gene_biotype: protein_coding
description:
  RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.


ensembl_gene_id: Caka_1519
symbol: tatA
gene_biotype: protein_coding
description:
  Twin-arginine translocation protein, TatA/E family subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.


ensembl_gene_id: Caka_1522
symbol: Caka_1522
gene_biotype: protein_coding
description:
  Cyclopropane-fatty-acyl-phospholipid synthase; KEGG: abo:ABO_0828 hypothetical protein; PFAM: Methyltransferase type 11.


ensembl_gene_id: Caka_1524
symbol: Caka_1524
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1365; KEGG: dol:Dole_0349 cyclopropane-fatty-acyl- phospholipid synthase.


ensembl_gene_id: Caka_1525
symbol: Caka_1525
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: rbi:RB2501_09720 RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Caka_1527
symbol: Caka_1527
gene_biotype: protein_coding
description:
  PFAM: Glu/Leu/Phe/Val dehydrogenase; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: scl:sce6195 glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.


ensembl_gene_id: Caka_1528
symbol: Caka_1528
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_6753 cyclopropane-fatty-acyl- phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase.


ensembl_gene_id: Caka_1533
symbol: Caka_1533
gene_biotype: protein_coding
description:
  Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.


ensembl_gene_id: Caka_1535
symbol: gcvH
gene_biotype: protein_coding
description:
  Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.


ensembl_gene_id: Caka_1537
symbol: Caka_1537
gene_biotype: protein_coding
description:
  PFAM: CBS domain containing protein; protein of unknown function DUF21; KEGG: dps:DP2605 hypothetical protein.


ensembl_gene_id: Caka_1540
symbol: Caka_1540
gene_biotype: protein_coding
description:
  Porphobilinogen synthase; KEGG: ote:Oter_2487 delta-aminolevulinic acid dehydratase; PFAM: delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.


ensembl_gene_id: Caka_1541
symbol: cysS
gene_biotype: protein_coding
description:
  TIGRFAM: cysteinyl-tRNA synthetase; KEGG: amu:Amuc_1031 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: Caka_1545
symbol: thrS
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2483 threonyl-tRNA synthetase; TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Threonyl/alanyl tRNA synthetase SAD; Anticodon-binding domain protein; Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: Caka_1548
symbol: Caka_1548
gene_biotype: protein_coding
description:
  TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: ote:Oter_3087 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region.


ensembl_gene_id: Caka_1550
symbol: mutM
gene_biotype: protein_coding
description:
  formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.


ensembl_gene_id: Caka_1552
symbol: Caka_1552
gene_biotype: protein_coding
description:
  KEGG: wsu:WS0203 uracil permease; TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease.


ensembl_gene_id: Caka_1553
symbol: lysS
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2083 lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: Caka_1555
symbol: Caka_1555
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3485 heavy metal translocating P- type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; cadmium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase.


ensembl_gene_id: Caka_1556
symbol: Caka_1556
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; KEGG: rba:RB6542 xylose operon regulatory protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_1560
symbol: Caka_1560
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function DUF1592; Protein of unknown function DUF1587; Protein of unknown function DUF1595; Protein of unknown function DUF1588; protein of unknown function DUF1585; KEGG: rba:RB7033 filamin.


ensembl_gene_id: Caka_1563
symbol: Caka_1563
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3487 protein serine/threonine phosphatase; PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein.


ensembl_gene_id: Caka_1566
symbol: fabV
gene_biotype: protein_coding
description:
  Trans-2-enoyl-CoA reductase (NAD(+)); Involved in the final reduction of the elongation cycle of fatty acid synthesis (FAS II). Catalyzes the reduction of a carbon- carbon double bond in an enoyl moiety that is covalently linked to an acyl carrier protein (ACP); Belongs to the TER reductase family.


ensembl_gene_id: Caka_1567
symbol: Caka_1567
gene_biotype: protein_coding
description:
  TIGRFAM: nucleotide sugar dehydrogenase; KEGG: ote:Oter_2734 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.


ensembl_gene_id: Caka_1568
symbol: Caka_1568
gene_biotype: protein_coding
description:
  KEGG: rba:RB392 putative phosphatase; TIGRFAM: beta-phosphoglucomutase family hydrolase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD- superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase.


ensembl_gene_id: Caka_1569
symbol: Caka_1569
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: similar to solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25.


ensembl_gene_id: Caka_1574
symbol: tgt
gene_biotype: protein_coding
description:
  Queuine tRNA-ribosyltransferase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form t [...]


ensembl_gene_id: Caka_1575
symbol: ribH
gene_biotype: protein_coding
description:
  6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.


ensembl_gene_id: Caka_1576
symbol: nusB
gene_biotype: protein_coding
description:
  NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.


ensembl_gene_id: Caka_1577
symbol: ftsY
gene_biotype: protein_coding
description:
  Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).


ensembl_gene_id: Caka_1578
symbol: aroB
gene_biotype: protein_coding
description:
  3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).


ensembl_gene_id: Caka_1579
symbol: Caka_1579
gene_biotype: protein_coding
description:
  SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: protease Do; KEGG: ote:Oter_2338 protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein.


ensembl_gene_id: Caka_1580
symbol: prs
gene_biotype: protein_coding
description:
  Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.


ensembl_gene_id: Caka_1581
symbol: lpxD
gene_biotype: protein_coding
description:
  UDP-3-O-(3-hydroxymyristoyl) glucosamine N- acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.


ensembl_gene_id: Caka_1583
symbol: Caka_1583
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2334 outer membrane protein assembly complex, YaeT protein; TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein.


ensembl_gene_id: Caka_1584
symbol: Caka_1584
gene_biotype: protein_coding
description:
  Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.


ensembl_gene_id: Caka_1586
symbol: Caka_1586
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2288 single-strand binding protein; TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n.


ensembl_gene_id: Caka_1588
symbol: pth
gene_biotype: protein_coding
description:
  peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.


ensembl_gene_id: Caka_1594
symbol: Caka_1594
gene_biotype: protein_coding
description:
  Serine/threonine protein kinase; KEGG: amr:AM1_3738 hypothetical protein; PFAM: protein of unknown function DUF323; PEGA domain protein; SMART: serine/threonine protein kinase.


ensembl_gene_id: Caka_1595
symbol: Caka_1595
gene_biotype: protein_coding
description:
  Phosphopantothenate--cysteine ligase; KEGG: afl:Aflv_1793 phosphopantothenoylcysteine synthetase/decarboxylase; PFAM: flavoprotein.


ensembl_gene_id: Caka_1596
symbol: leuA
gene_biotype: protein_coding
description:
  2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.


ensembl_gene_id: Caka_1598
symbol: dapF
gene_biotype: protein_coding
description:
  Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.


ensembl_gene_id: Caka_1599
symbol: Caka_1599
gene_biotype: protein_coding
description:
  PFAM: CutA1 divalent ion tolerance protein; KEGG: ote:Oter_2717 CutA1 divalent ion tolerance protein.


ensembl_gene_id: Caka_1600
symbol: Caka_1600
gene_biotype: protein_coding
description:
  PFAM: FAD linked oxidase domain protein; KEGG: ote:Oter_3919 FAD linked oxidase domain- containing protein.


ensembl_gene_id: Caka_1601
symbol: Caka_1601
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: jan:Jann_0866 cyclic nucleotide-regulated FAD- dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Caka_1602
symbol: Caka_1602
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3856 response regulator receiver sensor signal transduction histidine kinase; PFAM: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein.


ensembl_gene_id: Caka_1603
symbol: ychF
gene_biotype: protein_coding
description:
  GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.


ensembl_gene_id: Caka_1609
symbol: Caka_1609
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1555; KEGG: cti:RALTA_B1440 metalloprotease, hemolysin- type calcium-binding region.


ensembl_gene_id: Caka_1610
symbol: Caka_1610
gene_biotype: protein_coding
description:
  acyl-(acyl-carrier-protein)--UDP-N-acetylglucosa mineO-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: Caka_1611
symbol: lpxC
gene_biotype: protein_coding
description:
  Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.


ensembl_gene_id: Caka_1612
symbol: ffh
gene_biotype: protein_coding
description:
  Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.


ensembl_gene_id: Caka_1613
symbol: Caka_1613
gene_biotype: protein_coding
description:
  TIGRFAM: hypoxanthine phosphoribosyltransferase; KEGG: ote:Oter_3617 hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.


ensembl_gene_id: Caka_1614
symbol: Caka_1614
gene_biotype: protein_coding
description:
  Glycogen/starch/alpha-glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.


ensembl_gene_id: Caka_1616
symbol: prfB
gene_biotype: protein_coding
description:
  Hypothetical protein; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.


ensembl_gene_id: Caka_1617
symbol: Caka_1617
gene_biotype: protein_coding
description:
  ABC-type sugar transport system periplasmic component-like protein; KEGG: dth:DICTH_1560 ABC transporter sugar-binding protein.


ensembl_gene_id: Caka_1618
symbol: Caka_1618
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3828 glycoside hydrolase family 13 protein; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.


ensembl_gene_id: Caka_1622
symbol: mnmA
gene_biotype: protein_coding
description:
  tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.


ensembl_gene_id: Caka_1624
symbol: Caka_1624
gene_biotype: protein_coding
description:
  TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; KEGG: dhd:Dhaf_4586 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase.


ensembl_gene_id: Caka_1625
symbol: thiL
gene_biotype: protein_coding
description:
  Thiamine-phosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.


ensembl_gene_id: Caka_1631
symbol: Caka_1631
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_4603 transglutaminase domain- containing protein; PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein.


ensembl_gene_id: Caka_1634
symbol: Caka_1634
gene_biotype: protein_coding
description:
  Response regulator receiver protein; KEGG: ote:Oter_3186 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; SMART: response regulator receiver.


ensembl_gene_id: Caka_1635
symbol: Caka_1635
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_1603 general secretion pathway protein G; TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G.


ensembl_gene_id: Caka_1642
symbol: Caka_1642
gene_biotype: protein_coding
description:
  PFAM: type II and III secretion system protein; NolW domain protein; KEGG: ote:Oter_1622 type II and III secretion system protein.


ensembl_gene_id: Caka_1645
symbol: Caka_1645
gene_biotype: protein_coding
description:
  RNA-binding S4 domain protein; KEGG: pdi:BDI_0331 putative heat shock protein 15; PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein.


ensembl_gene_id: Caka_1646
symbol: ispF
gene_biotype: protein_coding
description:
  2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).


ensembl_gene_id: Caka_1647
symbol: Caka_1647
gene_biotype: protein_coding
description:
  PFAM: nucleoside diphosphate kinase; KEGG: ote:Oter_2667 nucleoside-diphosphate kinase; SMART: nucleoside diphosphate kinase.


ensembl_gene_id: Caka_1648
symbol: Caka_1648
gene_biotype: protein_coding
description:
  PFAM: Transcriptional regulator TetR; regulatory protein TetR; KEGG: sfu:Sfum_0446 TetR family transcriptional regulator.


ensembl_gene_id: Caka_1649
symbol: Caka_1649
gene_biotype: protein_coding
description:
  KEGG: dsa:Desal_3049 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein.


ensembl_gene_id: Caka_1650
symbol: Caka_1650
gene_biotype: protein_coding
description:
  Efflux transporter, RND family, MFP subunit; KEGG: dat:HRM2_00910 putative H+-transporting two- sector ATPase, beta subunit (ArcA-family protein); TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Caka_1651
symbol: Caka_1651
gene_biotype: protein_coding
description:
  PFAM: acriflavin resistance protein; KEGG: dat:HRM2_00900 putative H+-transporting two- sector ATPase, gamma subunit (AcrC-family protein); Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: Caka_1654
symbol: rlmH
gene_biotype: protein_coding
description:
  Protein of unknown function DUF163; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.


ensembl_gene_id: Caka_1655
symbol: Caka_1655
gene_biotype: protein_coding
description:
  PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ote:Oter_2555 endonuclease/exonuclease/phosphatase.


ensembl_gene_id: Caka_1657
symbol: Caka_1657
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2866 phospholipase D/transphosphatidylase; PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase.


ensembl_gene_id: Caka_1658
symbol: Caka_1658
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: ttu:TERTU_2104 oligopeptide-binding protein OppA.


ensembl_gene_id: Caka_1659
symbol: Caka_1659
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ote:Oter_2420 nickel-transporting ATPase.


ensembl_gene_id: Caka_1660
symbol: Caka_1660
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ttu:TERTU_2102 oligopeptide transport system permease protein OppC.


ensembl_gene_id: Caka_1661
symbol: Caka_1661
gene_biotype: protein_coding
description:
  PFAM: polysaccharide biosynthesis protein CapD; KEGG: dol:Dole_1009 polysaccharide biosynthesis protein CapD.


ensembl_gene_id: Caka_1662
symbol: Caka_1662
gene_biotype: protein_coding
description:
  Glutamine--scyllo-inositol transaminase; KEGG: afw:Anae109_2633 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: Caka_1664
symbol: rplQ
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_0200 ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17.


ensembl_gene_id: Caka_1665
symbol: rpoA
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: Caka_1666
symbol: rpsD
gene_biotype: protein_coding
description:
  Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.


ensembl_gene_id: Caka_1667
symbol: rpsK
gene_biotype: protein_coding
description:
  30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.


ensembl_gene_id: Caka_1668
symbol: rpsM
gene_biotype: protein_coding
description:
  30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.


ensembl_gene_id: Caka_1669
symbol: map
gene_biotype: protein_coding
description:
  Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.


ensembl_gene_id: Caka_1670
symbol: secY
gene_biotype: protein_coding
description:
  Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.


ensembl_gene_id: Caka_1671
symbol: rplO
gene_biotype: protein_coding
description:
  Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.


ensembl_gene_id: Caka_1672
symbol: rpsE
gene_biotype: protein_coding
description:
  Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.


ensembl_gene_id: Caka_1673
symbol: rplR
gene_biotype: protein_coding
description:
  Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.


ensembl_gene_id: Caka_1674
symbol: rplF
gene_biotype: protein_coding
description:
  Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.


ensembl_gene_id: Caka_1675
symbol: rpsH
gene_biotype: protein_coding
description:
  Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.


ensembl_gene_id: Caka_1676
symbol: rpsN
gene_biotype: protein_coding
description:
  Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.


ensembl_gene_id: Caka_1677
symbol: rplE
gene_biotype: protein_coding
description:
  Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.


ensembl_gene_id: Caka_1678
symbol: rplX
gene_biotype: protein_coding
description:
  Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.


ensembl_gene_id: Caka_1679
symbol: rplN
gene_biotype: protein_coding
description:
  Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.


ensembl_gene_id: Caka_1680
symbol: rpsQ
gene_biotype: protein_coding
description:
  30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.


ensembl_gene_id: Caka_1681
symbol: rpmC
gene_biotype: protein_coding
description:
  KEGG: dau:Daud_0233 50S ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.


ensembl_gene_id: Caka_1682
symbol: rplP
gene_biotype: protein_coding
description:
  Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.


ensembl_gene_id: Caka_1683
symbol: rpsC
gene_biotype: protein_coding
description:
  Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.


ensembl_gene_id: Caka_1684
symbol: rplV
gene_biotype: protein_coding
description:
  Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.


ensembl_gene_id: Caka_1686
symbol: rpsS
gene_biotype: protein_coding
description:
  Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.


ensembl_gene_id: Caka_1687
symbol: rplB
gene_biotype: protein_coding
description:
  Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.


ensembl_gene_id: Caka_1688
symbol: rplW
gene_biotype: protein_coding
description:
  Ribosomal protein L25/L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.


ensembl_gene_id: Caka_1690
symbol: rplC
gene_biotype: protein_coding
description:
  50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.


ensembl_gene_id: Caka_1691
symbol: Caka_1691
gene_biotype: protein_coding
description:
  PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: pmx:PERMA_1292 single-strand binding protein family protein.


ensembl_gene_id: Caka_1695
symbol: Caka_1695
gene_biotype: protein_coding
description:
  KEGG: cps:CPS_2991 von Willebrand factor type A domain-containing protein; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A.


ensembl_gene_id: Caka_1698
symbol: Caka_1698
gene_biotype: protein_coding
description:
  PFAM: ATPase associated with various cellular activities AAA_3; KEGG: cps:CPS_2988 hypothetical protein.


ensembl_gene_id: Caka_1699
symbol: Caka_1699
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: mlo:mll5470 hypothetical protein.


ensembl_gene_id: Caka_1700
symbol: Caka_1700
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: vfm:VFMJ11_2484 hypothetical protein.


ensembl_gene_id: Caka_1702
symbol: Caka_1702
gene_biotype: protein_coding
description:
  KEGG: swo:Swol_1723 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Caka_1706
symbol: rpsJ
gene_biotype: protein_coding
description:
  Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.


ensembl_gene_id: Caka_1708
symbol: rpsG
gene_biotype: protein_coding
description:
  Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.


ensembl_gene_id: Caka_1709
symbol: rpsL
gene_biotype: protein_coding
description:
  Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.


ensembl_gene_id: Caka_1711
symbol: Caka_1711
gene_biotype: protein_coding
description:
  KEGG: dma:DMR_10760 RNA-binding protein; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein.


ensembl_gene_id: Caka_1712
symbol: Caka_1712
gene_biotype: protein_coding
description:
  KEGG: cth:Cthe_2998 ABC transporter related protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.


ensembl_gene_id: Caka_1713
symbol: Caka_1713
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_1912 phosphotransferase system, phosphocarrier protein HPr; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr.


ensembl_gene_id: Caka_1716
symbol: Caka_1716
gene_biotype: protein_coding
description:
  PFAM: Methionine biosynthesis MetW protein; KEGG: ote:Oter_1469 methionine biosynthesis MetW protein.


ensembl_gene_id: Caka_1717
symbol: metXA
gene_biotype: protein_coding
description:
  Homoserine O-acetyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine.


ensembl_gene_id: Caka_1718
symbol: Caka_1718
gene_biotype: protein_coding
description:
  PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: bha:BH1491 protease; Belongs to the peptidase S8 family.


ensembl_gene_id: Caka_1723
symbol: Caka_1723
gene_biotype: protein_coding
description:
  4-amino-4-deoxy-L-arabinose transferase-like protein glycosyltransferase of PMT family; KEGG: tgr:Tgr7_3096 glycosyl transferase family 39.


ensembl_gene_id: Caka_1726
symbol: Caka_1726
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 39; KEGG: min:Minf_0934 4-amino-4-deoxy-L-arabinose transferase or related glycosyltransferase of PMT family.


ensembl_gene_id: Caka_1727
symbol: Caka_1727
gene_biotype: protein_coding
description:
  Phosphoesterase PA-phosphatase related protein; KEGG: min:Minf_1207 membrane-associated phospholipid phosphatase; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related.


ensembl_gene_id: Caka_1728
symbol: Caka_1728
gene_biotype: protein_coding
description:
  KEGG: dal:Dalk_2668 phosphoesterase PA-phosphatase related; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related.


ensembl_gene_id: Caka_1732
symbol: Caka_1732
gene_biotype: protein_coding
description:
  TIGRFAM: ribonuclease, Rne/Rng family; KEGG: ote:Oter_0293 ribonuclease; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; RNA binding S1 domain protein.


ensembl_gene_id: Caka_1733
symbol: Caka_1733
gene_biotype: protein_coding
description:
  TIGRFAM: glycerate kinase; KEGG: ote:Oter_1787 glycerate kinase; PFAM: glycerate kinase; Belongs to the glycerate kinase type-1 family.


ensembl_gene_id: Caka_1738
symbol: Caka_1738
gene_biotype: protein_coding
description:
  KEGG: rca:Rcas_3081 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein.


ensembl_gene_id: Caka_1739
symbol: Caka_1739
gene_biotype: protein_coding
description:
  TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; KEGG: hoh:Hoch_5880 succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein.


ensembl_gene_id: Caka_1740
symbol: Caka_1740
gene_biotype: protein_coding
description:
  TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; KEGG: ote:Oter_0671 succinate dehydrogenase/fumarate reductase cytochrome b subunit.


ensembl_gene_id: Caka_1741
symbol: pyrG
gene_biotype: protein_coding
description:
  CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.


ensembl_gene_id: Caka_1743
symbol: Caka_1743
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3554 indole-3-glycerol-phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase; Belongs to the TrpC family.


ensembl_gene_id: Caka_1744
symbol: Caka_1744
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3555 ribosomal RNA adenine methylase transferase; PFAM: ribosomal RNA adenine methylase transferase; SMART: Ribosomal RNA adenine methylase transferase- like.


ensembl_gene_id: Caka_1745
symbol: Caka_1745
gene_biotype: protein_coding
description:
  PFAM: sodium:dicarboxylate symporter; KEGG: tcx:Tcr_0917 sodium:dicarboxylate symporter; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: Caka_1749
symbol: queF
gene_biotype: protein_coding
description:
  7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily.


ensembl_gene_id: Caka_1750
symbol: ftsH
gene_biotype: protein_coding
description:
  ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family.  In the central section; belongs to the AAA ATPase family.


ensembl_gene_id: Caka_1751
symbol: tilS
gene_biotype: protein_coding
description:
  tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.


ensembl_gene_id: Caka_1752
symbol: queA
gene_biotype: protein_coding
description:
  S-adenosylmethionine/tRNA-ribosyltransferase- isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).


ensembl_gene_id: Caka_1753
symbol: Caka_1753
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3779 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein.


ensembl_gene_id: Caka_1760
symbol: Caka_1760
gene_biotype: protein_coding
description:
  TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: ote:Oter_3523 deoxyguanosinetriphosphate triphosphohydrolase; SMART: metal-dependent phosphohydrolase HD region; Belongs to the dGTPase family. Type 2 subfamily.


ensembl_gene_id: Caka_1762
symbol: Caka_1762
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3669 ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR.


ensembl_gene_id: Caka_1766
symbol: Caka_1766
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3671 protein tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight.


ensembl_gene_id: Caka_1767
symbol: Caka_1767
gene_biotype: protein_coding
description:
  PFAM: major intrinsic protein; KEGG: min:Minf_0612 glycerol uptake facilitator or related permease (major intrinsic protein family); Belongs to the MIP/aquaporin (TC 1.A.8) family.


ensembl_gene_id: Caka_1768
symbol: Caka_1768
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: protein of unknown function DUF306 MetA and HslJ.


ensembl_gene_id: Caka_1769
symbol: Caka_1769
gene_biotype: protein_coding
description:
  TIGRFAM: riboflavin synthase, alpha subunit; KEGG: ote:Oter_3865 riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein.


ensembl_gene_id: Caka_1777
symbol: Caka_1777
gene_biotype: protein_coding
description:
  PFAM: transport system permease protein; KEGG: rrs:RoseRS_3088 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: Caka_1778
symbol: Caka_1778
gene_biotype: protein_coding
description:
  Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: ttj:TTHA1292 metal uptake regulation protein, putative; Belongs to the Fur family.


ensembl_gene_id: Caka_1780
symbol: Caka_1780
gene_biotype: protein_coding
description:
  PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sat:SYN_01425 outer membrane B12 receptor.


ensembl_gene_id: Caka_1785
symbol: Caka_1785
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_1986 von Willebrand factor type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A.


ensembl_gene_id: Caka_1786
symbol: Caka_1786
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_1985 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2.


ensembl_gene_id: Caka_1788
symbol: obg
gene_biotype: protein_coding
description:
  GTP-binding protein Obg/CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.


ensembl_gene_id: Caka_1790
symbol: Caka_1790
gene_biotype: protein_coding
description:
  Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: Caka_1791
symbol: Caka_1791
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2818 riboflavin biosynthesis protein RibF; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase; FAD synthetase; Belongs to the ribF family.


ensembl_gene_id: Caka_1792
symbol: truB
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.


ensembl_gene_id: Caka_1793
symbol: Caka_1793
gene_biotype: protein_coding
description:
  PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: ote:Oter_2816 phosphoesterase domain- containing protein.


ensembl_gene_id: Caka_1794
symbol: rbfA
gene_biotype: protein_coding
description:
  Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.


ensembl_gene_id: Caka_1795
symbol: infB
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.


ensembl_gene_id: Caka_1796
symbol: nusA
gene_biotype: protein_coding
description:
  Transcription termination factor NusA; Participates in both transcription termination and antitermination.


ensembl_gene_id: Caka_1797
symbol: queE
gene_biotype: protein_coding
description:
  Radical SAM domain protein; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.


ensembl_gene_id: Caka_1799
symbol: queC
gene_biotype: protein_coding
description:
  exsB protein; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.


ensembl_gene_id: Caka_1801
symbol: Caka_1801
gene_biotype: protein_coding
description:
  PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein; KEGG: ote:Oter_1496 Cys/Met metabolism pyridoxal- phosphate-dependent protein.


ensembl_gene_id: Caka_1802
symbol: Caka_1802
gene_biotype: protein_coding
description:
  Peptidoglycan-binding lysin domain protein; KEGG: sfu:Sfum_3764 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: Peptidoglycan-binding lysin domain; N- acetylmuramoyl-L-alanine amidase family 2; SMART: Peptidoglycan-binding LysM; N-acetylmuramoyl- L-alanine amidase family 2; Animal peptidoglycan recognition protein PGRP.


ensembl_gene_id: Caka_1803
symbol: Caka_1803
gene_biotype: protein_coding
description:
  PFAM: amino acid-binding ACT domain protein; KEGG: ppg:PputGB1_0385 amino acid-binding ACT domain-containing protein.


ensembl_gene_id: Caka_1806
symbol: Caka_1806
gene_biotype: protein_coding
description:
  KEGG: plt:Plut_0486 sodium:solute symporter family protein; TIGRFAM: putative sodium symporter protein; PFAM: Na+/solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: Caka_1808
symbol: Caka_1808
gene_biotype: protein_coding
description:
  KEGG: DAD1; Diaminopimelate decarboxylase; K01586 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2.


ensembl_gene_id: Caka_1810
symbol: Caka_1810
gene_biotype: protein_coding
description:
  PFAM: CMP/dCMP deaminase zinc-binding; Cytidine and deoxycytidylate deaminase zinc-binding domain protein; KEGG: ypy:YPK_2561 cytidine deaminase.


ensembl_gene_id: Caka_1811
symbol: Caka_1811
gene_biotype: protein_coding
description:
  KEGG: pjd:Pjdr2_4804 histidinol phosphate phosphatase HisJ family; TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP domain protein; Belongs to the PHP hydrolase family. HisK subfamily.


ensembl_gene_id: Caka_1812
symbol: Caka_1812
gene_biotype: protein_coding
description:
  Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).


ensembl_gene_id: Caka_1813
symbol: Caka_1813
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_4165 thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Caka_1816
symbol: Caka_1816
gene_biotype: protein_coding
description:
  Hydrolase, TatD family; KEGG: ote:Oter_1911 TatD-related deoxyribonuclease; TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease.


ensembl_gene_id: Caka_1819
symbol: Caka_1819
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_0051 2-dehydro-3- deoxyphosphooctonate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA.


ensembl_gene_id: Caka_1820
symbol: Caka_1820
gene_biotype: protein_coding
description:
  Methyltransferase; KEGG: ote:Oter_0683 methyltransferase; TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase putative.


ensembl_gene_id: Caka_1821
symbol: Caka_1821
gene_biotype: protein_coding
description:
  PFAM: Ferritin Dps family protein; KEGG: wsu:WS1589 neutrophil-activating protein (neutrophil activating protein NapA)(fragment); Belongs to the Dps family.


ensembl_gene_id: Caka_1825
symbol: Caka_1825
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; KEGG: ana:alr2575 transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_1828
symbol: Caka_1828
gene_biotype: protein_coding
description:
  PFAM: PepSY-associated TM helix domain protein; KEGG: swd:Swoo_3790 PepSY-associated TM helix domain-containing protein.


ensembl_gene_id: Caka_1831
symbol: Caka_1831
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_0180 DNA protecting protein DprA; TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein.


ensembl_gene_id: Caka_1832
symbol: nnrD
gene_biotype: protein_coding
description:
  Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. In the C-terminal section; belongs to the NnrD/CARKD family.


ensembl_gene_id: Caka_1834
symbol: pdxJ
gene_biotype: protein_coding
description:
  Pyridoxal phosphate biosynthetic protein PdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.


ensembl_gene_id: Caka_1835
symbol: Caka_1835
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3463 single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1.


ensembl_gene_id: Caka_1836
symbol: secF
gene_biotype: protein_coding
description:
  Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.


ensembl_gene_id: Caka_1837
symbol: Caka_1837
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3465 preprotein translocase, YajC subunit; TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein.


ensembl_gene_id: Caka_1839
symbol: menA
gene_biotype: protein_coding
description:
  1,4-dihydroxy-2-naphthoateoctaprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily.


ensembl_gene_id: Caka_1844
symbol: Caka_1844
gene_biotype: protein_coding
description:
  Glycine dehydrogenase (decarboxylating); KEGG: car:cauri_1713 glycine cleavage system P protein; PFAM: Glycine cleavage system P-protein-like.


ensembl_gene_id: Caka_1845
symbol: gcvT
gene_biotype: protein_coding
description:
  Glycine cleavage system T protein; The glycine cleavage system catalyzes the degradation of glycine.


ensembl_gene_id: Caka_1846
symbol: Caka_1846
gene_biotype: protein_coding
description:
  PDZ/DHR/GLGF domain protein; KEGG: min:Minf_1854 serine protease Do (heat-shock protein); PFAM: PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein.


ensembl_gene_id: Caka_1848
symbol: Caka_1848
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_0635 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2.


ensembl_gene_id: Caka_1849
symbol: Caka_1849
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3289 UDP-glucose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.


ensembl_gene_id: Caka_1850
symbol: Caka_1850
gene_biotype: protein_coding
description:
  PFAM: Beta-ketoacyl synthase; KEGG: ote:Oter_3288 beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: Caka_1855
symbol: nrdR
gene_biotype: protein_coding
description:
  ATP-cone domain protein; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.


ensembl_gene_id: Caka_1856
symbol: Caka_1856
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_0176 glutamine amidotransferase of anthranilate synthase; TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I.


ensembl_gene_id: Caka_1858
symbol: kdsB
gene_biotype: protein_coding
description:
  3-deoxy-D-manno- octulosonatecytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.


ensembl_gene_id: Caka_1859
symbol: Caka_1859
gene_biotype: protein_coding
description:
  Rhodanese domain protein; KEGG: ote:Oter_3531 UBA/ThiF-type NAD/FAD binding protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein.


ensembl_gene_id: Caka_1860
symbol: Caka_1860
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_4565 adenylate/guanylate cyclase with CHASE sensor; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain protein; SMART: adenylyl cyclase class-3/4/guanylyl cyclase.


ensembl_gene_id: Caka_1862
symbol: Caka_1862
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_4567 O-antigen polymerase; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat.


ensembl_gene_id: Caka_1863
symbol: Caka_1863
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: Caka_1864
symbol: Caka_1864
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: Caka_1869
symbol: Caka_1869
gene_biotype: protein_coding
description:
  KEGG: cts:Ctha_2166 glutamate synthase (ferredoxin); PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein.


ensembl_gene_id: Caka_1870
symbol: Caka_1870
gene_biotype: protein_coding
description:
  KEGG: cyc:PCC7424_3656 glutamate synthase, NADH/NADPH, small subunit; TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Caka_1873
symbol: Caka_1873
gene_biotype: protein_coding
description:
  PHP domain protein; KEGG: ote:Oter_2809 phosphotransferase domain- containing protein; PFAM: PHP domain protein; SMART: DNA polymerase X; Helix-hairpin-helix DNA- binding class 1; phosphoesterase PHP domain protein.


ensembl_gene_id: Caka_1875
symbol: Caka_1875
gene_biotype: protein_coding
description:
  TIGRFAM: o-succinylbenzoic acid (OSB) synthetase; KEGG: amr:AM1_3753 O-succinylbenzoate synthase; PFAM: Mandelate racemase/muconate lactonizing protein.


ensembl_gene_id: Caka_1876
symbol: Caka_1876
gene_biotype: protein_coding
description:
  IMP dehydrogenase; KEGG: ote:Oter_2805 malate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein.


ensembl_gene_id: Caka_1877
symbol: purA
gene_biotype: protein_coding
description:
  Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.


ensembl_gene_id: Caka_1882
symbol: Caka_1882
gene_biotype: protein_coding
description:
  KEGG: ttu:TERTU_1745 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein; TIGRFAM: phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein; PFAM: Haloacid dehalogenase domain protein hydrolase.


ensembl_gene_id: Caka_1884
symbol: miaA
gene_biotype: protein_coding
description:
  tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.


ensembl_gene_id: Caka_1886
symbol: Caka_1886
gene_biotype: protein_coding
description:
  PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase; KEGG: gbm:Gbem_3625 NCAIR mutase (PurE)-related protein-like protein.


ensembl_gene_id: Caka_1887
symbol: larC
gene_biotype: protein_coding
description:
  Protein of unknown function DUF111; Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2+), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor-dependent enzymes. Belongs to the LarC family.


ensembl_gene_id: Caka_1891
symbol: Caka_1891
gene_biotype: protein_coding
description:
  KEGG: cvi:CV_3561 cysteine synthase; TIGRFAM: cysteine synthase A; cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit.


ensembl_gene_id: Caka_1892
symbol: infA
gene_biotype: protein_coding
description:
  Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.


ensembl_gene_id: Caka_1893
symbol: tadA
gene_biotype: protein_coding
description:
  CMP/dCMP deaminase zinc-binding protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: Caka_1894
symbol: Caka_1894
gene_biotype: protein_coding
description:
  Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.


ensembl_gene_id: Caka_1896
symbol: der
gene_biotype: protein_coding
description:
  Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.


ensembl_gene_id: Caka_1898
symbol: Caka_1898
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2838 AsnC family transcriptional regulator; PFAM: Transcription regulator, AsnC-type-like; SMART: Transcription regulator, AsnC-type.


ensembl_gene_id: Caka_1899
symbol: Caka_1899
gene_biotype: protein_coding
description:
  Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; response regulator receiver; Hpt domain protein; KEGG: ote:Oter_2216 PAS/PAC sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; response regulator receiver; Hpt domain protein.


ensembl_gene_id: Caka_1901
symbol: Caka_1901
gene_biotype: protein_coding
description:
  PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier- protein (ACP)] synthase III; KEGG: ote:Oter_3278 3-oxoacyl-(acyl carrier protein) synthase III.


ensembl_gene_id: Caka_1903
symbol: Caka_1903
gene_biotype: protein_coding
description:
  PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: ote:Oter_3280 beta-hydroxyacyl-(acyl-carrier- protein) dehydratase FabA/FabZ.


ensembl_gene_id: Caka_1904
symbol: Caka_1904
gene_biotype: protein_coding
description:
  PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: syn:sll1135 hypothetical protein.


ensembl_gene_id: Caka_1905
symbol: Caka_1905
gene_biotype: protein_coding
description:
  PFAM: domain of unknown function DUF1731; NAD- dependent epimerase/dehydratase; KEGG: ote:Oter_2666 hypothetical protein.


ensembl_gene_id: Caka_1906
symbol: Caka_1906
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2665 deoxyribodipyrimidine photo- lyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein.


ensembl_gene_id: Caka_1909
symbol: Caka_1909
gene_biotype: protein_coding
description:
  PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: ote:Oter_3746 phosphoglucomutase/phosphomannomutase alpha/beta/subunit.


ensembl_gene_id: Caka_1913
symbol: Caka_1913
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_1634 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver.


ensembl_gene_id: Caka_1915
symbol: Caka_1915
gene_biotype: protein_coding
description:
  TIGRFAM: helicase, RecD/TraA family; KEGG: ote:Oter_4627 RecD/TraA family helicase; SMART: AAA ATPase; Helix-hairpin-helix DNA-binding class 1.


ensembl_gene_id: Caka_1916
symbol: Caka_1916
gene_biotype: protein_coding
description:
  PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: syp:SYNPCC7002_A2445 oxidoreductase, FAD/FMN- binding protein.


ensembl_gene_id: Caka_1917
symbol: Caka_1917
gene_biotype: protein_coding
description:
  PFAM: deoxyribodipyrimidine photolyase-related protein; DNA photolyase FAD-binding; KEGG: ttu:TERTU_2093 deoxyribodipyrimidine photolyase-related protein.


ensembl_gene_id: Caka_1919
symbol: Caka_1919
gene_biotype: protein_coding
description:
  Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.


ensembl_gene_id: Caka_1922
symbol: Caka_1922
gene_biotype: protein_coding
description:
  PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: npu:Npun_R2901 multi-sensor hybrid histidine kinase; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein.


ensembl_gene_id: Caka_1928
symbol: Caka_1928
gene_biotype: protein_coding
description:
  PFAM: alpha/beta hydrolase fold; SNARE associated Golgi protein; KEGG: lbf:LBF_2070 hypothetical protein.


ensembl_gene_id: Caka_1929
symbol: trpS
gene_biotype: protein_coding
description:
  tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: Caka_1931
symbol: Caka_1931
gene_biotype: protein_coding
description:
  PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold domain protein; histidine kinase A domain protein; KEGG: mpl:Mpal_1518 PAS/PAC sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAS domain containing protein; histidine kinase A domain protein.


ensembl_gene_id: Caka_1932
symbol: Caka_1932
gene_biotype: protein_coding
description:
  PFAM: domain of unknown function DUF1745; FIST C domain; KEGG: cyn:Cyan7425_4241 domain of unknown function DUF1745.


ensembl_gene_id: Caka_1934
symbol: Caka_1934
gene_biotype: protein_coding
description:
  Serine/threonine protein kinase; KEGG: drt:Dret_1973 ABC-1 domain protein; PFAM: ABC-1 domain protein; SMART: serine/threonine protein kinase.


ensembl_gene_id: Caka_1938
symbol: Caka_1938
gene_biotype: protein_coding
description:
  PFAM: type II and III secretion system protein; KEGG: ote:Oter_2851 type II and III secretion system protein; Belongs to the bacterial secretin family.


ensembl_gene_id: Caka_1944
symbol: recF
gene_biotype: protein_coding
description:
  DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.


ensembl_gene_id: Caka_1946
symbol: Caka_1946
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_0628 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.


ensembl_gene_id: Caka_1947
symbol: Caka_1947
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rrs:RoseRS_2636 alcohol dehydrogenase.


ensembl_gene_id: Caka_1950
symbol: Caka_1950
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_1732 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_1954
symbol: murA
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine1- carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.


ensembl_gene_id: Caka_1955
symbol: ruvB
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.


ensembl_gene_id: Caka_1956
symbol: Caka_1956
gene_biotype: protein_coding
description:
  PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: amu:Amuc_1080 RNA methyltransferase, TrmH family, group 3; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: Caka_1957
symbol: Caka_1957
gene_biotype: protein_coding
description:
  Cytidyltransferase-related domain protein; KEGG: ote:Oter_0022 cytidyltransferase-like protein; TIGRFAM: cytidyltransferase-related domain protein; PFAM: cytidylyltransferase.


ensembl_gene_id: Caka_1958
symbol: tyrS
gene_biotype: protein_coding
description:
  tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily.


ensembl_gene_id: Caka_1959
symbol: Caka_1959
gene_biotype: protein_coding
description:
  PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: ote:Oter_2684 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.


ensembl_gene_id: Caka_1960
symbol: Caka_1960
gene_biotype: protein_coding
description:
  PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: ote:Oter_2686 anti-sigma-factor antagonist.


ensembl_gene_id: Caka_1961
symbol: Caka_1961
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2687 protein serine phosphatase with GAF(s) sensor(s); PFAM: Stage II sporulation E family protein; GAF domain protein; SMART: protein phosphatase 2C domain protein; GAF domain protein.


ensembl_gene_id: Caka_1962
symbol: Caka_1962
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_4598 rod shape-determining protein MreB; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl.


ensembl_gene_id: Caka_1965
symbol: Caka_1965
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_4602 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain.


ensembl_gene_id: Caka_1967
symbol: ruvC
gene_biotype: protein_coding
description:
  Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.


ensembl_gene_id: Caka_1968
symbol: truA
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.


ensembl_gene_id: Caka_1970
symbol: Caka_1970
gene_biotype: protein_coding
description:
  TIGRFAM: FolC bifunctional protein; KEGG: ote:Oter_2353 FolC bifunctional protein; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; Belongs to the folylpolyglutamate synthase family.


ensembl_gene_id: Caka_1971
symbol: accD
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.


ensembl_gene_id: Caka_1973
symbol: Caka_1973
gene_biotype: protein_coding
description:
  KEGG: dae:Dtox_3452 molybdenum ABC transporter, periplasmic molybdate-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1.


ensembl_gene_id: Caka_1974
symbol: Caka_1974
gene_biotype: protein_coding
description:
  Molybdate ABC transporter, inner membrane subunit; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: Caka_1975
symbol: Caka_1975
gene_biotype: protein_coding
description:
  TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; KEGG: mei:Msip34_2324 molybdate ABC transporter, ATPase subunit; SMART: AAA ATPase.


ensembl_gene_id: Caka_1976
symbol: Caka_1976
gene_biotype: protein_coding
description:
  PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; KEGG: sru:SRU_2273 potassium-efflux system protein, putative; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.


ensembl_gene_id: Caka_1977
symbol: Caka_1977
gene_biotype: protein_coding
description:
  PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; KEGG: sru:SRU_2272 potassium efflux system protein, putative; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.


ensembl_gene_id: Caka_1978
symbol: carA
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_1915 carbamoyl-phosphate synthase, small subunit; TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; Belongs to the CarA family.


ensembl_gene_id: Caka_1981
symbol: Caka_1981
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; KEGG: ecr:ECIAI1_2117 UDP-N-acetylglucosamine 4- epimerase (UDP-GlcNAc 4-epimerase).


ensembl_gene_id: Caka_1982
symbol: Caka_1982
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase group 1; KEGG: amr:AM1_3607 glycosyl transferase, group 1 family protein, putative.


ensembl_gene_id: Caka_1983
symbol: Caka_1983
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase group 1; KEGG: bbe:BBR47_42500 putative polysaccharide biosynthesis protein.


ensembl_gene_id: Caka_2001
symbol: Caka_2001
gene_biotype: protein_coding
description:
  KEGG: amu:Amuc_1457 phosphoribosylformimino-5- aminoimidazole carboxamide ribotide isomerase; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein; Belongs to the HisA/HisF family.


ensembl_gene_id: Caka_2004
symbol: Caka_2004
gene_biotype: protein_coding
description:
  KEGG: btk:BT9727_3272 ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR.


ensembl_gene_id: Caka_2005
symbol: Caka_2005
gene_biotype: protein_coding
description:
  TIGRFAM: lysine 2,3-aminomutase YodO family protein; KEGG: ote:Oter_1916 lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein.


ensembl_gene_id: Caka_2007
symbol: Caka_2007
gene_biotype: protein_coding
description:
  KEGG: tau:Tola_2362 SNF2-related protein; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.


ensembl_gene_id: Caka_2012
symbol: Caka_2012
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1566; KEGG: dsa:Desal_0909 protein of unknown function DUF1566.


ensembl_gene_id: Caka_2013
symbol: Caka_2013
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; KEGG: ote:Oter_1841 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.


ensembl_gene_id: Caka_2014
symbol: Caka_2014
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_1840 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein.


ensembl_gene_id: Caka_2015
symbol: purE
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).


ensembl_gene_id: Caka_2016
symbol: purK
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, ATPase subunit; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).


ensembl_gene_id: Caka_2017
symbol: trpE
gene_biotype: protein_coding
description:
  Anthranilate synthase component I; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...]


ensembl_gene_id: Caka_2018
symbol: Caka_2018
gene_biotype: protein_coding
description:
  RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: Caka_2020
symbol: lnt
gene_biotype: protein_coding
description:
  Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.


ensembl_gene_id: Caka_2021
symbol: secA
gene_biotype: protein_coding
description:
  Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.


ensembl_gene_id: Caka_2023
symbol: cobQ
gene_biotype: protein_coding
description:
  Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.


ensembl_gene_id: Caka_2029
symbol: Caka_2029
gene_biotype: protein_coding
description:
  PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pzu:PHZ_c0823 TonB-dependent receptor.


ensembl_gene_id: Caka_2032
symbol: Caka_2032
gene_biotype: protein_coding
description:
  Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: aeh:Mlg_0939 ferric uptake regulator family protein; Belongs to the Fur family.


ensembl_gene_id: Caka_2035
symbol: Caka_2035
gene_biotype: protein_coding
description:
  KEGG: dsh:Dshi_2689 cytochrome bd ubiquinol oxidase subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II.


ensembl_gene_id: Caka_2037
symbol: Caka_2037
gene_biotype: protein_coding
description:
  Dimethylallyltranstransferase; KEGG: ote:Oter_0636 polyprenyl synthetase; PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: Caka_2039
symbol: mutS
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.


ensembl_gene_id: Caka_2043
symbol: Caka_2043
gene_biotype: protein_coding
description:
  PFAM: surface antigen variable number repeat protein; KEGG: smt:Smal_2200 polypeptide-transport- associated domain protein ShlB-type.


ensembl_gene_id: Caka_2044
symbol: Caka_2044
gene_biotype: protein_coding
description:
  KEGG: rce:RC1_0943 the GLUG motif domain protein, putative; TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein.


ensembl_gene_id: Caka_2046
symbol: Caka_2046
gene_biotype: protein_coding
description:
  PFAM: SecA DEAD domain protein; SecA preprotein cross-linking region; KEGG: mgm:Mmc1_2197 preprotein translocase subunit SecA.


ensembl_gene_id: Caka_2047
symbol: Caka_2047
gene_biotype: protein_coding
description:
  PFAM: peptidase M50; biotin/lipoyl attachment domain-containing protein; KEGG: cch:Cag_1407 M50 family peptidase.


ensembl_gene_id: Caka_2048
symbol: Caka_2048
gene_biotype: protein_coding
description:
  Putative phytochrome sensor protein; PFAM: GAF domain protein; KEGG: cch:Cag_1408 membrane-fusion protein-like.


ensembl_gene_id: Caka_2049
symbol: Caka_2049
gene_biotype: protein_coding
description:
  PFAM: secretion protein HlyD family protein; KEGG: min:Minf_0527 membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Caka_2053
symbol: Caka_2053
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_1667 cell divisionFtsK/SpoIIIE; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: AAA ATPase.


ensembl_gene_id: Caka_2054
symbol: Caka_2054
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_1668 mannose-6-phosphate isomerase type I; PFAM: mannose-6-phosphate isomerase type I.


ensembl_gene_id: Caka_2055
symbol: grpE
gene_biotype: protein_coding
description:
  GrpE protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent i [...]


ensembl_gene_id: Caka_2056
symbol: dnaJ
gene_biotype: protein_coding
description:
  Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]


ensembl_gene_id: Caka_2057
symbol: purN
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.


ensembl_gene_id: Caka_2060
symbol: prmC
gene_biotype: protein_coding
description:
  protein-(glutamine-N5) methyltransferase, release factor-specific; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.


ensembl_gene_id: Caka_2061
symbol: prfA
gene_biotype: protein_coding
description:
  Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.


ensembl_gene_id: Caka_2064
symbol: Caka_2064
gene_biotype: protein_coding
description:
  Conserved repeat domain protein; KEGG: pcu:pc0616 putative 60 kDa cysteine-rich outer membrane protein; TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11.


ensembl_gene_id: Caka_2066
symbol: Caka_2066
gene_biotype: protein_coding
description:
  Transcriptional regulator/antitoxin, MazE; PFAM: SpoVT/AbrB domain protein; KEGG: apt:APA01_43760 transcriptional regulator MazE.


ensembl_gene_id: Caka_2067
symbol: Caka_2067
gene_biotype: protein_coding
description:
  KEGG: rpe:RPE_4100 death-on-curing family protein; TIGRFAM: death-on-curing family protein; PFAM: filamentation induced by cAMP protein Fic.


ensembl_gene_id: Caka_2069
symbol: Caka_2069
gene_biotype: protein_coding
description:
  TIGRFAM: urea carboxylase; urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; Carbamoyl- phosphate synthase L chain ATP-binding; Carbamoyl- phosphate synthetase large chain domain protein; biotin carboxylase domain protein; Allophanate hydrolase subunit 1; biotin/lipoyl attachment domain-containing protein; KEGG: mei:Msip34_0953 UreA carboxylase; SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1.


ensembl_gene_id: Caka_2070
symbol: Caka_2070
gene_biotype: protein_coding
description:
  KEGG: tgr:Tgr7_3088 UreA carboxylase-associated protein 1; TIGRFAM: urea carboxylase-associated protein 1; PFAM: Domain of unknown function DUF1989.


ensembl_gene_id: Caka_2071
symbol: Caka_2071
gene_biotype: protein_coding
description:
  KEGG: sus:Acid_0868 hypothetical protein; TIGRFAM: urea carboxylase-associated protein 2; PFAM: Domain of unknown function DUF1989.


ensembl_gene_id: Caka_2072
symbol: Caka_2072
gene_biotype: protein_coding
description:
  TIGRFAM: glutamine synthetase, type III; KEGG: mei:Msip34_0949 glutamine synthetase, type III; PFAM: glutamine synthetase catalytic region.


ensembl_gene_id: Caka_2074
symbol: Caka_2074
gene_biotype: protein_coding
description:
  KEGG: hna:Hneap_0792 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Caka_2075
symbol: Caka_2075
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tcx:Tcr_1787 binding-protein dependent transport system inner membrane protein.


ensembl_gene_id: Caka_2080
symbol: Caka_2080
gene_biotype: protein_coding
description:
  6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.


ensembl_gene_id: Caka_2082
symbol: Caka_2082
gene_biotype: protein_coding
description:
  DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]


ensembl_gene_id: Caka_2083
symbol: Caka_2083
gene_biotype: protein_coding
description:
  CDP-diacylglycerol/serine O-phosphatidyltransferase; KEGG: ote:Oter_0954 CDP-diacylglycerol--serine O- phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/serine O- phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: Caka_2086
symbol: Caka_2086
gene_biotype: protein_coding
description:
  Hydroxymethylbutenyl pyrophosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.


ensembl_gene_id: Caka_2087
symbol: Caka_2087
gene_biotype: protein_coding
description:
  KEGG: noc:Noc_0868 hemimethylated DNA-binding region; TIGRFAM: hemimethylated DNA binding protein; PFAM: Hemimethylated DNA-binding region.


ensembl_gene_id: Caka_2088
symbol: miaB
gene_biotype: protein_coding
description:
  RNA modification enzyme, MiaB family; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.


ensembl_gene_id: Caka_2091
symbol: Caka_2091
gene_biotype: protein_coding
description:
  TIGRFAM: formate acetyltransferase; KEGG: cdf:CD0759 formate acetyltransferase; PFAM: pyruvate formate-lyase PFL; formate C- acetyltransferase glycine radical.


ensembl_gene_id: Caka_2092
symbol: Caka_2092
gene_biotype: protein_coding
description:
  Pyruvate formate-lyase activating enzyme; Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine; Belongs to the organic radical-activating enzymes family.


ensembl_gene_id: Caka_2097
symbol: recA
gene_biotype: protein_coding
description:
  recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.


ensembl_gene_id: Caka_2099
symbol: mnmE
gene_biotype: protein_coding
description:
  tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.


ensembl_gene_id: Caka_2100
symbol: mnmG
gene_biotype: protein_coding
description:
  Glucose-inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.


ensembl_gene_id: Caka_2101
symbol: Caka_2101
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; KEGG: ote:Oter_2550 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.


ensembl_gene_id: Caka_2102
symbol: Caka_2102
gene_biotype: protein_coding
description:
  Histidine kinase; KEGG: ote:Oter_2551 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.


ensembl_gene_id: Caka_2103
symbol: trmB
gene_biotype: protein_coding
description:
  Putative methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.


ensembl_gene_id: Caka_2105
symbol: atpB
gene_biotype: protein_coding
description:
  ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.


ensembl_gene_id: Caka_2106
symbol: Caka_2106
gene_biotype: protein_coding
description:
  PFAM: H+transporting two-sector ATPase C subunit; KEGG: ote:Oter_0880 H+transporting two-sector ATPase C subunit.


ensembl_gene_id: Caka_2107
symbol: atpF
gene_biotype: protein_coding
description:
  ATP synthase F0, B subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.


ensembl_gene_id: Caka_2108
symbol: Caka_2108
gene_biotype: protein_coding
description:
  PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; KEGG: ote:Oter_0878 hypothetical protein.


ensembl_gene_id: Caka_2109
symbol: atpA
gene_biotype: protein_coding
description:
  ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.


ensembl_gene_id: Caka_2110
symbol: atpG
gene_biotype: protein_coding
description:
  ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.


ensembl_gene_id: Caka_2111
symbol: atpD
gene_biotype: protein_coding
description:
  ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.


ensembl_gene_id: Caka_2112
symbol: atpC
gene_biotype: protein_coding
description:
  ATP synthase F1, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.


ensembl_gene_id: Caka_2114
symbol: coaX
gene_biotype: protein_coding
description:
  Transcriptional activator, Baf family; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.


ensembl_gene_id: Caka_2115
symbol: birA
gene_biotype: protein_coding
description:
  biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.


ensembl_gene_id: Caka_2116
symbol: Caka_2116
gene_biotype: protein_coding
description:
  TIGRFAM: nicotinate-nucleotide pyrophosphorylase; KEGG: gsu:GSU1936 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; Belongs to the NadC/ModD family.


ensembl_gene_id: Caka_2120
symbol: Caka_2120
gene_biotype: protein_coding
description:
  Carboxyl-terminal protease; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; TIGRFAM: carboxyl-terminal protease; KEGG: ote:Oter_3496 carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; Belongs to the peptidase S41A family.


ensembl_gene_id: Caka_2125
symbol: Caka_2125
gene_biotype: protein_coding
description:
  PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: rba:RB8035 potassium transporter peripheral membrane component.


ensembl_gene_id: Caka_2135
symbol: Caka_2135
gene_biotype: protein_coding
description:
  KEGG: csa:Csal_0288 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase.


ensembl_gene_id: Caka_2142
symbol: Caka_2142
gene_biotype: protein_coding
description:
  Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.


ensembl_gene_id: Caka_2144
symbol: Caka_2144
gene_biotype: protein_coding
description:
  KEGG: bpt:Bpet4157 LuxR family transcriptional regulator; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR.


ensembl_gene_id: Caka_2145
symbol: rsmG
gene_biotype: protein_coding
description:
  Methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.


ensembl_gene_id: Caka_2150
symbol: Caka_2150
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_4228 UreA ABC transporter, permease protein UrtB; TIGRFAM: urea ABC transporter, permease protein UrtB; PFAM: inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Caka_2151
symbol: Caka_2151
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_4227 UreA ABC transporter, permease protein UrtC; TIGRFAM: urea ABC transporter, permease protein UrtC; PFAM: inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Caka_2152
symbol: Caka_2152
gene_biotype: protein_coding
description:
  TIGRFAM: urea ABC transporter, ATP-binding protein UrtD; PFAM: ABC transporter related; KEGG: ote:Oter_4226 UreA ABC transporter, ATP- binding protein UrtD; SMART: AAA ATPase.


ensembl_gene_id: Caka_2153
symbol: Caka_2153
gene_biotype: protein_coding
description:
  TIGRFAM: urea ABC transporter, ATP-binding protein UrtE; PFAM: ABC transporter related; KEGG: aeh:Mlg_0192 ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Caka_2154
symbol: ureA
gene_biotype: protein_coding
description:
  TIGRFAM: urease, gamma subunit; KEGG: aau:AAur_0214 urease subunit gamma; PFAM: Urease gamma subunit region; Belongs to the urease gamma subunit family.


ensembl_gene_id: Caka_2155
symbol: ureB
gene_biotype: protein_coding
description:
  TIGRFAM: urease, beta subunit; KEGG: bpy:Bphyt_0929 urease, beta subunit; PFAM: Urease beta subunit; Belongs to the urease beta subunit family.


ensembl_gene_id: Caka_2156
symbol: ureC
gene_biotype: protein_coding
description:
  TIGRFAM: urease, alpha subunit; KEGG: ote:Oter_4222 urease subunit alpha; PFAM: amidohydrolase; Urease alpha-subunit domain protein.


ensembl_gene_id: Caka_2157
symbol: Caka_2157
gene_biotype: protein_coding
description:
  UreE urease accessory domain protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly.


ensembl_gene_id: Caka_2158
symbol: ureF
gene_biotype: protein_coding
description:
  Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.


ensembl_gene_id: Caka_2159
symbol: ureG
gene_biotype: protein_coding
description:
  Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.


ensembl_gene_id: Caka_2160
symbol: ureD
gene_biotype: protein_coding
description:
  Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.


ensembl_gene_id: Caka_2161
symbol: Caka_2161
gene_biotype: protein_coding
description:
  TIGRFAM: autotransporter-associated beta strand repeat protein; KEGG: ote:Oter_2736 beta strand repeat-containing protein.


ensembl_gene_id: Caka_2162
symbol: def
gene_biotype: protein_coding
description:
  Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.


ensembl_gene_id: Caka_2164
symbol: Caka_2164
gene_biotype: protein_coding
description:
  PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: gvi:glr3963 thiol-disulfide interchange protein DsbD-like protein.


ensembl_gene_id: Caka_2165
symbol: Caka_2165
gene_biotype: protein_coding
description:
  PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: sru:SRU_2710 hypothetical protein.


ensembl_gene_id: Caka_2169
symbol: Caka_2169
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2004 GAF sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; GAF domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; GAF domain protein; histidine kinase A domain protein.


ensembl_gene_id: Caka_2170
symbol: glnD
gene_biotype: protein_coding
description:
  UTP-GlnB uridylyltransferase, GlnD; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism.


ensembl_gene_id: Caka_2173
symbol: Caka_2173
gene_biotype: protein_coding
description:
  Sodium/glutamate symporter; Catalyzes the sodium-dependent transport of glutamate. Belongs to the glutamate:Na(+) symporter (ESS) (TC 2.A.27) family.


ensembl_gene_id: Caka_2174
symbol: Caka_2174
gene_biotype: protein_coding
description:
  PFAM: catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; biotin/lipoyl attachment domain-containing protein; KEGG: ote:Oter_2845 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase.


ensembl_gene_id: Caka_2175
symbol: Caka_2175
gene_biotype: protein_coding
description:
  Transketolase central region; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.


ensembl_gene_id: Caka_2176
symbol: pdhA
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).


ensembl_gene_id: Caka_2178
symbol: valS
gene_biotype: protein_coding
description:
  valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.


ensembl_gene_id: Caka_2184
symbol: Caka_2184
gene_biotype: protein_coding
description:
  KEGG: mca:MCA2172 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Caka_2191
symbol: Caka_2191
gene_biotype: protein_coding
description:
  KEGG: met:M446_1204 von Willebrand factor type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A.


ensembl_gene_id: Caka_2194
symbol: Caka_2194
gene_biotype: protein_coding
description:
  PFAM: ATPase associated with various cellular activities AAA_3; KEGG: sun:SUN_2386 AAA family ATPase.


ensembl_gene_id: Caka_2199
symbol: Caka_2199
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function UPF0102; KEGG: ote:Oter_3909 hypothetical protein; Belongs to the UPF0102 family.


ensembl_gene_id: Caka_2200
symbol: zwf
gene_biotype: protein_coding
description:
  Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.


ensembl_gene_id: Caka_2202
symbol: Caka_2202
gene_biotype: protein_coding
description:
  PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: ote:Oter_1151 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.


ensembl_gene_id: Caka_2204
symbol: Caka_2204
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 2; Methyltransferase type 12; KEGG: ote:Oter_3985 glycosyl transferase family protein.


ensembl_gene_id: Caka_2205
symbol: Caka_2205
gene_biotype: protein_coding
description:
  PFAM: Transketolase central region; dehydrogenase E1 component; Transketolase domain protein; biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; KEGG: pay:PAU_02673 similar to 3-methyl-2- oxobutanoate dehydrogenase.


ensembl_gene_id: Caka_2210
symbol: Caka_2210
gene_biotype: protein_coding
description:
  TIGRFAM: pyruvate kinase; KEGG: ote:Oter_1561 pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; Belongs to the pyruvate kinase family.


ensembl_gene_id: Caka_2214
symbol: Caka_2214
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3296 two component, sigma54 specific, fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis- type; SMART: response regulator receiver; AAA ATPase.


ensembl_gene_id: Caka_2217
symbol: Caka_2217
gene_biotype: protein_coding
description:
  KEGG: bpy:Bphyt_0535 rhodanese domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein.


ensembl_gene_id: Caka_2218
symbol: Caka_2218
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF481; KEGG: eli:ELI_03545 putative salt-induced outer membrane protein.


ensembl_gene_id: Caka_2219
symbol: Caka_2219
gene_biotype: protein_coding
description:
  PFAM: Glycoside hydrolase, family 20, catalytic core; KEGG: hau:Haur_1177 glycoside hydrolase family protein.


ensembl_gene_id: Caka_2220
symbol: Caka_2220
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pat:Patl_2977 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Caka_2221
symbol: Caka_2221
gene_biotype: protein_coding
description:
  KEGG: cpi:Cpin_3704 PA14 domain protein; PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein.


ensembl_gene_id: Caka_2222
symbol: Caka_2222
gene_biotype: protein_coding
description:
  PFAM: peptidase membrane zinc metallopeptidase putative; KEGG: ote:Oter_3489 peptidase membrane zinc metallopeptidase putative.


ensembl_gene_id: Caka_2223
symbol: glpK
gene_biotype: protein_coding
description:
  Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.


ensembl_gene_id: Caka_2224
symbol: Caka_2224
gene_biotype: protein_coding
description:
  PFAM: MscS Mechanosensitive ion channel; KEGG: pca:Pcar_0306 small-conductance mechanosensitive channel.


ensembl_gene_id: Caka_2225
symbol: Caka_2225
gene_biotype: protein_coding
description:
  KEGG: aba:Acid345_3027 glutamate--tRNA ligase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: Caka_2227
symbol: Caka_2227
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_1588 DEAD/DEAH box helicase domain- containing protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.


ensembl_gene_id: Caka_2229
symbol: ppnP
gene_biotype: protein_coding
description:
  Protein of unknown function DUF1255; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.


ensembl_gene_id: Caka_2231
symbol: Caka_2231
gene_biotype: protein_coding
description:
  Carbonate dehydratase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.


ensembl_gene_id: Caka_2233
symbol: panC
gene_biotype: protein_coding
description:
  Pantoate/beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.


ensembl_gene_id: Caka_2235
symbol: Caka_2235
gene_biotype: protein_coding
description:
  2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.


ensembl_gene_id: Caka_2239
symbol: nth
gene_biotype: protein_coding
description:
  Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.


ensembl_gene_id: Caka_2241
symbol: clpB
gene_biotype: protein_coding
description:
  ATP-dependent chaperone ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.


ensembl_gene_id: Caka_2244
symbol: panB
gene_biotype: protein_coding
description:
  3-methyl-2-oxobutanoatehydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.


ensembl_gene_id: Caka_2245
symbol: gpsA
gene_biotype: protein_coding
description:
  Glycerol-3-phosphate dehydrogenase (NAD(P)(+)); KEGG: bte:BTH_I0420 NAD(P)H-dependent glycerol-3- phosphate dehydrogenase; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: Caka_2248
symbol: glyQS
gene_biotype: protein_coding
description:
  glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: Caka_2252
symbol: pstB
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, ATPase subunit; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.


ensembl_gene_id: Caka_2253
symbol: Caka_2253
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2547 phosphate ABC transporter, inner membrane subunit PstA; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Caka_2254
symbol: Caka_2254
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, inner membrane subunit PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: Caka_2259
symbol: Caka_2259
gene_biotype: protein_coding
description:
  PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cts:Ctha_1737 TonB-dependent receptor.


ensembl_gene_id: Caka_2261
symbol: Caka_2261
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1555; KEGG: ote:Oter_1722 beta strand repeat-containing protein.


ensembl_gene_id: Caka_2263
symbol: Caka_2263
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: SMG1; SMG1 homolog, phosphatidylinositol 3- kinase-related kinase (C. elegans); K08873 PI-3- kinase-related kinase SMG-1.


ensembl_gene_id: Caka_2266
symbol: Caka_2266
gene_biotype: protein_coding
description:
  KEGG: swp:swp_4947 TPR repeat protein; PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide repeat.


ensembl_gene_id: Caka_2267
symbol: Caka_2267
gene_biotype: protein_coding
description:
  TIGRFAM: TonB family protein; KEGG: sml:Smlt0009 putative proline-rich TonB dependent receptor protein.


ensembl_gene_id: Caka_2268
symbol: Caka_2268
gene_biotype: protein_coding
description:
  PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sdn:Sden_2155 biopolymer transport protein ExbD/TolR.


ensembl_gene_id: Caka_2280
symbol: Caka_2280
gene_biotype: protein_coding
description:
  PFAM: type II and III secretion system protein; NolW domain protein; KEGG: ote:Oter_0639 type II and III secretion system protein.


ensembl_gene_id: Caka_2283
symbol: Caka_2283
gene_biotype: protein_coding
description:
  KEGG: bth:BT_4211 putative phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein domain protein.


ensembl_gene_id: Caka_2284
symbol: Caka_2284
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2111 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase.


ensembl_gene_id: Caka_2286
symbol: aroA
gene_biotype: protein_coding
description:
  3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.


ensembl_gene_id: Caka_2290
symbol: Caka_2290
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2116 PilT domain-containing protein; PFAM: PilT protein domain protein; SMART: Nucleotide binding protein PINc.


ensembl_gene_id: Caka_2307
symbol: Caka_2307
gene_biotype: protein_coding
description:
  Excinuclease ABC C subunit domain protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.


ensembl_gene_id: Caka_2308
symbol: Caka_2308
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_1157 competence/damage-inducible protein CinA; TIGRFAM: competence/damage-inducible protein CinA; PFAM: CinA domain protein; molybdopterin binding domain; Belongs to the CinA family.


ensembl_gene_id: Caka_2309
symbol: Caka_2309
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_1404 DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta.


ensembl_gene_id: Caka_2310
symbol: Caka_2310
gene_biotype: protein_coding
description:
  PFAM: Cupin 2 conserved barrel domain protein; KEGG: pvi:Cvib_0572 cupin 2 domain-containing protein.


ensembl_gene_id: Caka_2311
symbol: Caka_2311
gene_biotype: protein_coding
description:
  KEGG: amu:Amuc_1941 adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; Adenylosuccinate lyase-like; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.


ensembl_gene_id: Caka_2313
symbol: Caka_2313
gene_biotype: protein_coding
description:
  FAD-dependent pyridine nucleotide-disulfide oxidoreductase; KEGG: afl:Aflv_0303 multidomain redox protein (NAD(FAD)-dependent oxidoreductase; rhodanese domain; SirA- like redox domain; peroxiredoxin domain); PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SirA family protein; Domain of unknown function DUF1791; DsrE family protein; SMART: Rhodanese domain protein; Belongs to the sulfur carrier protein TusA family.


ensembl_gene_id: Caka_2314
symbol: Caka_2314
gene_biotype: protein_coding
description:
  KEGG: fps:FP1595 ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR.


ensembl_gene_id: Caka_2315
symbol: Caka_2315
gene_biotype: protein_coding
description:
  KEGG: phe:Phep_0122 nicotinamide mononucleotide transporter PnuC; TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC.


ensembl_gene_id: Caka_2322
symbol: Caka_2322
gene_biotype: protein_coding
description:
  PFAM: 3'-5' exonuclease; HRDC domain protein; KEGG: apv:Apar_0639 ribonuclease D; SMART: 3'-5' exonuclease; HRDC domain protein.


ensembl_gene_id: Caka_2323
symbol: rsmI
gene_biotype: protein_coding
description:
  Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.


ensembl_gene_id: Caka_2326
symbol: pgi
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3018 glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase (PGI); Belongs to the GPI family.


ensembl_gene_id: Caka_2328
symbol: ilvD
gene_biotype: protein_coding
description:
  TIGRFAM: dihydroxy-acid dehydratase; KEGG: ote:Oter_3020 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; Belongs to the IlvD/Edd family.


ensembl_gene_id: Caka_2329
symbol: Caka_2329
gene_biotype: protein_coding
description:
  Chromosome segregation and condensation protein, ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: Caka_2330
symbol: Caka_2330
gene_biotype: protein_coding
description:
  PFAM: prephenate dehydratase; Chorismate mutase, type II; amino acid-binding ACT domain protein; KEGG: ote:Oter_3022 chorismate mutase.


ensembl_gene_id: Caka_2336
symbol: Caka_2336
gene_biotype: protein_coding
description:
  PFAM: leucine rich repeat variant; KEGG: ddr:Deide_12080 putative leucine rich repeat variant protein.


ensembl_gene_id: Caka_2337
symbol: Caka_2337
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_1667 cell divisionFtsK/SpoIIIE; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: AAA ATPase; Belongs to the FtsK/SpoIIIE/SftA family.


ensembl_gene_id: Caka_2338
symbol: Caka_2338
gene_biotype: protein_coding
description:
  SNF2-related protein; KEGG: ote:Oter_2541 non-specific serine/threonine protein kinase; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.


ensembl_gene_id: Caka_2340
symbol: Caka_2340
gene_biotype: protein_coding
description:
  Trypsin-like protein serine protease typically periplasmic contain C-terminal PDZ domain; KEGG: smd:Smed_2014 protease Do.


ensembl_gene_id: Caka_2341
symbol: aroQ
gene_biotype: protein_coding
description:
  3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.


ensembl_gene_id: Caka_2343
symbol: Caka_2343
gene_biotype: protein_coding
description:
  PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: hch:HCH_01659 molybdopterin/thiamine biosynthesis family protein.


ensembl_gene_id: Caka_2344
symbol: Caka_2344
gene_biotype: protein_coding
description:
  KEGG: glo:Glov_2393 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver.


ensembl_gene_id: Caka_2347
symbol: Caka_2347
gene_biotype: protein_coding
description:
  Anaerobic ribonucleoside-triphosphate reductase activating protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.


ensembl_gene_id: Caka_2348
symbol: Caka_2348
gene_biotype: protein_coding
description:
  TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; KEGG: vcj:VCD_000816 ribonucleotide reductase of class III (anaerobic) large subunit; PFAM: formate C-acetyltransferase glycine radical; ATP-cone domain protein.


ensembl_gene_id: Caka_2350
symbol: Caka_2350
gene_biotype: protein_coding
description:
  KpsF/GutQ family protein; SMART: CBS domain containing protein; TIGRFAM: KpsF/GutQ family protein; KEGG: sus:Acid_2500 KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein; Belongs to the SIS family. GutQ/KpsF subfamily.


ensembl_gene_id: Caka_2352
symbol: Caka_2352
gene_biotype: protein_coding
description:
  PFAM: conserved hypothetical protein; KEGG: noc:Noc_2839 hypothetical protein; Belongs to the LOG family.


ensembl_gene_id: Caka_2353
symbol: smc
gene_biotype: protein_coding
description:
  Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.


ensembl_gene_id: Caka_2357
symbol: hisD
gene_biotype: protein_coding
description:
  Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.


ensembl_gene_id: Caka_2359
symbol: hisC
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_0189 histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.


ensembl_gene_id: Caka_2360
symbol: hisB
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_0188 imidazoleglycerol-phosphate dehydratase; PFAM: imidazoleglycerol-phosphate dehydratase.


ensembl_gene_id: Caka_2361
symbol: hisH
gene_biotype: protein_coding
description:
  Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.


ensembl_gene_id: Caka_2362
symbol: Caka_2362
gene_biotype: protein_coding
description:
  TIGRFAM: citrate synthase I; KEGG: ote:Oter_0186 citrate synthase I; PFAM: Citrate synthase; Belongs to the citrate synthase family.


ensembl_gene_id: Caka_2365
symbol: Caka_2365
gene_biotype: protein_coding
description:
  TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: ote:Oter_2099 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein.


ensembl_gene_id: Caka_2371
symbol: Caka_2371
gene_biotype: protein_coding
description:
  PFAM: peptidylprolyl isomerase FKBP-type; FKBP-type peptidyl-prolyl isomerase domain protein; KEGG: ote:Oter_4022 peptidylprolyl isomerase FKBP- type.


ensembl_gene_id: Caka_2372
symbol: Caka_2372
gene_biotype: protein_coding
description:
  KEGG: cjd:JJD26997_0420 3-oxoacyl-(acyl carrier protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier- protein (ACP)] synthase III.


ensembl_gene_id: Caka_2374
symbol: Caka_2374
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pap:PSPA7_4285 short chain dehydrogenase/reductase family oxidoreductase.


ensembl_gene_id: Caka_2375
symbol: Caka_2375
gene_biotype: protein_coding
description:
  TIGRFAM: sugar O-acyltransferase, sialic acid O- acetyltransferase NeuD family; KEGG: psp:PSPPH_3424 hexapeptide repeat-containing transferase.


ensembl_gene_id: Caka_2377
symbol: Caka_2377
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rsk:RSKD131_3237 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Caka_2381
symbol: Caka_2381
gene_biotype: protein_coding
description:
  KEGG: pca:Pcar_3093 outer membrane protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein.


ensembl_gene_id: Caka_2382
symbol: Caka_2382
gene_biotype: protein_coding
description:
  KEGG: dvl:Dvul_0142 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Caka_2383
symbol: Caka_2383
gene_biotype: protein_coding
description:
  KEGG: pca:Pcar_3095 cation/multidrug efflux pump; TIGRFAM: transporter, hydrophobe/amphiphile efflux- 1 (HAE1) family; PFAM: acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: Caka_2390
symbol: pyrE
gene_biotype: protein_coding
description:
  Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).


ensembl_gene_id: Caka_2392
symbol: Caka_2392
gene_biotype: protein_coding
description:
  TIGRFAM: para-aminobenzoate synthase, subunit I; KEGG: dae:Dtox_4188 para-aminobenzoate synthase component I; PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein.


ensembl_gene_id: Caka_2395
symbol: Caka_2395
gene_biotype: protein_coding
description:
  Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.


ensembl_gene_id: Caka_2396
symbol: Caka_2396
gene_biotype: protein_coding
description:
  Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.


ensembl_gene_id: Caka_2397
symbol: Caka_2397
gene_biotype: protein_coding
description:
  TIGRFAM:2-amino-4-hydroxy-6- hydroxymethyldihydropter idinepyrophosphokinase; KEGG: cdf:CD1452 2-amino-4-hydroxy-6- hydroxymethyldihydropteridin e pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin- pyrophosphokinase HPPK.


ensembl_gene_id: Caka_2398
symbol: Caka_2398
gene_biotype: protein_coding
description:
  KEGG: dfe:Dfer_2959 hypothetical protein; TIGRFAM: conserved hypothetical protein; PFAM: Selenoprotein W-related.


ensembl_gene_id: Caka_2399
symbol: Caka_2399
gene_biotype: protein_coding
description:
  PFAM: Uracil-DNA glycosylase superfamily; KEGG: app:CAP2UW1_0682 uracil-DNA glycosylase superfamily.


ensembl_gene_id: Caka_2400
symbol: Caka_2400
gene_biotype: protein_coding
description:
  PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: ppd:Ppro_1410 membrane protein involved in aromatic hydrocarbon degradation.


ensembl_gene_id: Caka_2401
symbol: Caka_2401
gene_biotype: protein_coding
description:
  KEGG: dau:Daud_0675 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; GAF domain protein; SMART: ATP-binding region ATPase domain protein.


ensembl_gene_id: Caka_2403
symbol: Caka_2403
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; KEGG: mxa:MXAN_3343 sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.


ensembl_gene_id: Caka_2405
symbol: Caka_2405
gene_biotype: protein_coding
description:
  KEGG: gym:GYMC10_5552 histidine kinase; PFAM: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein.


ensembl_gene_id: Caka_2406
symbol: panD
gene_biotype: protein_coding
description:
  Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.


ensembl_gene_id: Caka_2407
symbol: glyA
gene_biotype: protein_coding
description:
  Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.


ensembl_gene_id: Caka_2409
symbol: Caka_2409
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2412 stationary-phase survival protein SurE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE.


ensembl_gene_id: Caka_2411
symbol: tal
gene_biotype: protein_coding
description:
  Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.


ensembl_gene_id: Caka_2413
symbol: argG
gene_biotype: protein_coding
description:
  TIGRFAM: argininosuccinate synthase; KEGG: ote:Oter_0688 argininosuccinate synthase; PFAM: argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.


ensembl_gene_id: Caka_2415
symbol: hemA
gene_biotype: protein_coding
description:
  glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).


ensembl_gene_id: Caka_2417
symbol: hemH
gene_biotype: protein_coding
description:
  Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.


ensembl_gene_id: Caka_2418
symbol: gmd
gene_biotype: protein_coding
description:
  GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.


ensembl_gene_id: Caka_2419
symbol: fcl
gene_biotype: protein_coding
description:
  NAD-dependent epimerase/dehydratase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.


ensembl_gene_id: Caka_2421
symbol: Caka_2421
gene_biotype: protein_coding
description:
  KEGG: amu:Amuc_0963 ABC transporter related; PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase.


ensembl_gene_id: Caka_2426
symbol: Caka_2426
gene_biotype: protein_coding
description:
  TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: ote:Oter_2092 DNA polymerase III, alpha subunit; SMART: phosphoesterase PHP domain protein.


ensembl_gene_id: Caka_2427
symbol: Caka_2427
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bld:BLi03508 YvrD; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Caka_2428
symbol: Caka_2428
gene_biotype: protein_coding
description:
  KEGG: drm:Dred_2715 cobyrinic acid a,c-diamide synthase; TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ domain protein glutamine amidotransferase.


ensembl_gene_id: Caka_2429
symbol: Caka_2429
gene_biotype: protein_coding
description:
  PFAM: periplasmic binding protein; KEGG: gfo:GFO_0479 ABC-type transporter periplasmic binding protein.


ensembl_gene_id: Caka_2431
symbol: Caka_2431
gene_biotype: protein_coding
description:
  dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.


ensembl_gene_id: Caka_2432
symbol: hisC-2
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_1594 histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.


ensembl_gene_id: Caka_2433
symbol: Caka_2433
gene_biotype: protein_coding
description:
  PFAM: transporter-associated region; CBS domain containing protein; protein of unknown function DUF21; KEGG: swo:Swol_1763 hypothetical protein.


ensembl_gene_id: Caka_2436
symbol: Caka_2436
gene_biotype: protein_coding
description:
  PFAM: polysaccharide export protein; Soluble ligand binding domain; KEGG: ote:Oter_3871 polysaccharide export protein.


ensembl_gene_id: Caka_2437
symbol: Caka_2437
gene_biotype: protein_coding
description:
  TIGRFAM: capsular exopolysaccharide family; KEGG: ote:Oter_1597 exopolysaccharide tyrosine- protein kinase; PFAM: lipopolysaccharide biosynthesis protein.


ensembl_gene_id: Caka_2438
symbol: Caka_2438
gene_biotype: protein_coding
description:
  Sua5/YciO/YrdC/YwlC family protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.


ensembl_gene_id: Caka_2439
symbol: Caka_2439
gene_biotype: protein_coding
description:
  KEGG: apr:Apre_0485 ribosomal protein S18; TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18; Belongs to the bacterial ribosomal protein bS18 family.


ensembl_gene_id: Caka_2440
symbol: Caka_2440
gene_biotype: protein_coding
description:
  TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; RQC domain; HRDC domain protein; KEGG: amu:Amuc_1710 ATP-dependent DNA helicase, RecQ family; SMART: DEAD-like helicase; helicase domain protein; HRDC domain protein.


ensembl_gene_id: Caka_2441
symbol: cobB
gene_biotype: protein_coding
description:
  PFAM: Silent information regulator protein Sir2; KEGG: ote:Oter_0371 silent information regulator protein Sir2; Belongs to the sirtuin family. Class III subfamily.


ensembl_gene_id: Caka_2444
symbol: Caka_2444
gene_biotype: protein_coding
description:
  PFAM: Biopolymer transport protein ExbD/TolR; KEGG: bur:Bcep18194_B1088 biopolymer transport protein ExbD/TolR.


ensembl_gene_id: Caka_2447
symbol: Caka_2447
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF179; KEGG: ote:Oter_3631 hypothetical protein; Belongs to the UPF0301 (AlgH) family.


ensembl_gene_id: Caka_2448
symbol: rpmJ
gene_biotype: protein_coding
description:
  KEGG: pfl:PFL_3806 50S ribosomal protein L36; TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.


ensembl_gene_id: Caka_2449
symbol: Caka_2449
gene_biotype: protein_coding
description:
  KEGG: amu:Amuc_1430 ribosomal protein L31; TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.


ensembl_gene_id: Caka_2451
symbol: Caka_2451
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_0467 ComEC/Rec2-related protein; TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein.


ensembl_gene_id: Caka_2452
symbol: Caka_2452
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_1704 ATPase central domain- containing protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase.


ensembl_gene_id: Caka_2454
symbol: Caka_2454
gene_biotype: protein_coding
description:
  PFAM: membrane protein of unknown function; KEGG: ote:Oter_2711 membrane protein of unknown function.


ensembl_gene_id: Caka_2455
symbol: Caka_2455
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2712 dihydrolipoamide dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region.


ensembl_gene_id: Caka_2459
symbol: glmS
gene_biotype: protein_coding
description:
  Glucosamine/fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.


ensembl_gene_id: Caka_2460
symbol: Caka_2460
gene_biotype: protein_coding
description:
  Glucose-1-phosphate adenylyltransferase; KEGG: ote:Oter_3366 nucleotidyl transferase; PFAM: Nucleotidyl transferase; transferase hexapeptide repeat containing protein; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.


ensembl_gene_id: Caka_2462
symbol: Caka_2462
gene_biotype: protein_coding
description:
  PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: smt:Smal_2289 TonB-dependent receptor plug.


ensembl_gene_id: Caka_2465
symbol: lgt
gene_biotype: protein_coding
description:
  Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.


ensembl_gene_id: Caka_2466
symbol: Caka_2466
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2843 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.


ensembl_gene_id: Caka_2467
symbol: Caka_2467
gene_biotype: protein_coding
description:
  TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: ote:Oter_2844 ParB-like partition protein; SMART: ParB domain protein nuclease; Belongs to the ParB family.


ensembl_gene_id: Caka_2470
symbol: Caka_2470
gene_biotype: protein_coding
description:
  Histidine kinase; KEGG: ter:Tery_2534 cyclic nucleotide-binding protein; PFAM: ATP-binding region ATPase domain protein; cyclic nucleotide-binding; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; cyclic nucleotide-binding; histidine kinase A domain protein.


ensembl_gene_id: Caka_2471
symbol: Caka_2471
gene_biotype: protein_coding
description:
  Carboxynorspermidine decarboxylase; KEGG: lsp:Bsph_3481 hypothetical protein; TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2.


ensembl_gene_id: Caka_2472
symbol: rpmH
gene_biotype: protein_coding
description:
  KEGG: oca:OCAR_7528 ribosomal protein L34; TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.


ensembl_gene_id: Caka_2473
symbol: rnpA
gene_biotype: protein_coding
description:
  Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.


ensembl_gene_id: Caka_2474
symbol: Caka_2474
gene_biotype: protein_coding
description:
  Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.


ensembl_gene_id: Caka_2475
symbol: yidC
gene_biotype: protein_coding
description:
  Membrane protein insertase, YidC/Oxa1 family; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.


ensembl_gene_id: Caka_2479
symbol: Caka_2479
gene_biotype: protein_coding
description:
  PFAM: 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: gbm:Gbem_2099 3-beta hydroxysteroid dehydrogenase/isomerase.


ensembl_gene_id: Caka_2480
symbol: Caka_2480
gene_biotype: protein_coding
description:
  Histidine kinase; KEGG: dma:DMR_41580 two-component hybrid sensor and regulator; PFAM: response regulator receiver; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein.


ensembl_gene_id: Caka_2481
symbol: Caka_2481
gene_biotype: protein_coding
description:
  PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: pcu:pc1792 putative rRNA methylase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: Caka_2482
symbol: Caka_2482
gene_biotype: protein_coding
description:
  TIGRFAM: RNA methyltransferase, TrmA family; KEGG: amu:Amuc_0850 RNA methyltransferase, TrmA family; PFAM: (Uracil-5)-methyltransferase; deoxyribonuclease/rho motif-related TRAM; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.


ensembl_gene_id: Caka_2483
symbol: rpsU
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2093 ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.


ensembl_gene_id: Caka_2484
symbol: Caka_2484
gene_biotype: protein_coding
description:
  PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ote:Oter_2094 xylose isomerase domain- containing protein.


ensembl_gene_id: Caka_2485
symbol: Caka_2485
gene_biotype: protein_coding
description:
  PFAM: heat shock protein Hsp20; KEGG: ote:Oter_0926 heat shock protein HSP20; Belongs to the small heat shock protein (HSP20) family.


ensembl_gene_id: Caka_2486
symbol: Caka_2486
gene_biotype: protein_coding
description:
  PFAM: heat shock protein Hsp20; KEGG: ote:Oter_0925 heat shock protein HSP20; Belongs to the small heat shock protein (HSP20) family.


ensembl_gene_id: Caka_2487
symbol: rpsB
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_4501 ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.


ensembl_gene_id: Caka_2488
symbol: tsf
gene_biotype: protein_coding
description:
  Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.


ensembl_gene_id: Caka_2492
symbol: Caka_2492
gene_biotype: protein_coding
description:
  KEGG: tpd:Teth39_1623 mannose-1-phosphate guanylyltransferase (GDP); PFAM: Nucleotidyl transferase; mannose-6-phosphate isomerase type II.


ensembl_gene_id: Caka_2493
symbol: Caka_2493
gene_biotype: protein_coding
description:
  Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.


ensembl_gene_id: Caka_2494
symbol: Caka_2494
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF140; KEGG: dma:DMR_22960 hypothetical membrane protein; Belongs to the MlaE permease family.


ensembl_gene_id: Caka_2496
symbol: Caka_2496
gene_biotype: protein_coding
description:
  PFAM: Mammalian cell entry related domain protein; KEGG: dal:Dalk_4433 mammalian cell entry related domain protein.


ensembl_gene_id: Caka_2503
symbol: eno
gene_biotype: protein_coding
description:
  Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.


ensembl_gene_id: Caka_2505
symbol: purU
gene_biotype: protein_coding
description:
  Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).


ensembl_gene_id: Caka_2506
symbol: carB
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_0679 carbamoyl-phosphate synthase, large subunit; TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; Carbamoyl-phosphate synthetase large chain domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; MGS domain protein; Belongs to the CarB family.


ensembl_gene_id: Caka_2511
symbol: Caka_2511
gene_biotype: protein_coding
description:
  KEGG: vsa:VSAL_I0672 putative chromate transporter; TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter.


ensembl_gene_id: Caka_2513
symbol: Caka_2513
gene_biotype: protein_coding
description:
  PFAM: von Willebrand factor type A; KEGG: amc:MADE_03506 secreted protein, containing von Willebrand factor (vWF) type A domain.


ensembl_gene_id: Caka_2514
symbol: Caka_2514
gene_biotype: protein_coding
description:
  PFAM: MotA/TolQ/ExbB proton channel; KEGG: amc:MADE_03505 possible biopolymer transport protein, ExbB family.


ensembl_gene_id: Caka_2518
symbol: Caka_2518
gene_biotype: protein_coding
description:
  Phospho-2-dehydro-3-deoxyheptonate aldolase; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP).


ensembl_gene_id: Caka_2519
symbol: Caka_2519
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_4089 pyruvate phosphate dikinase; TIGRFAM: pyruvate, phosphate dikinase; PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; PEP-utilising protein mobile region; PEP- utilizing protein; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: Caka_2520
symbol: tatC
gene_biotype: protein_coding
description:
  Sec-independent periplasmic protein translocase; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes.


ensembl_gene_id: Caka_2522
symbol: Caka_2522
gene_biotype: protein_coding
description:
  Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.


ensembl_gene_id: Caka_2526
symbol: Caka_2526
gene_biotype: protein_coding
description:
  TIGRFAM: isocitrate dehydrogenase, NADP-dependent; KEGG: vfi:VF_1775 isocitrate dehydrogenase; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type; Belongs to the monomeric-type IDH family.


ensembl_gene_id: Caka_2529
symbol: Caka_2529
gene_biotype: protein_coding
description:
  TIGRFAM: conserved hypothetical protein; PFAM: Radical SAM domain protein; KEGG: bvu:BVU_1992 hypothetical protein; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: Caka_2534
symbol: Caka_2534
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2418 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.


ensembl_gene_id: Caka_2535
symbol: Caka_2535
gene_biotype: protein_coding
description:
  KEGG: rca:Rcas_0781 glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: Caka_2537
symbol: Caka_2537
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1022; KEGG: tmz:Tmz1t_3765 protein of unknown function DUF1022.


ensembl_gene_id: Caka_2538
symbol: Caka_2538
gene_biotype: protein_coding
description:
  PFAM: lipid A biosynthesis acyltransferase; KEGG: amu:Amuc_1541 lipid A biosynthesis acyltransferase.


ensembl_gene_id: Caka_2554
symbol: Caka_2554
gene_biotype: protein_coding
description:
  KEGG: dps:DP0045 dTDP-D-glucose-4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.


ensembl_gene_id: Caka_2555
symbol: Caka_2555
gene_biotype: protein_coding
description:
  KEGG: gem:GM21_1748 SNF2-related protein; PFAM: SNF2-related protein; zinc finger SWIM domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.


ensembl_gene_id: Caka_2556
symbol: Caka_2556
gene_biotype: protein_coding
description:
  TIGRFAM: seryl-tRNA synthetase; KEGG: ote:Oter_2731 seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl- tRNA synthetase, class IIa-like.


ensembl_gene_id: Caka_2558
symbol: proS
gene_biotype: protein_coding
description:
  prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro).


ensembl_gene_id: Caka_2560
symbol: msrA-2
gene_biotype: protein_coding
description:
  Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.


ensembl_gene_id: Caka_2563
symbol: Caka_2563
gene_biotype: protein_coding
description:
  PFAM: nitrogen regulatory protein P-II; KEGG: ote:Oter_2478 nitrogen regulatory protein P- II; Belongs to the P(II) protein family.


ensembl_gene_id: Caka_2566
symbol: Caka_2566
gene_biotype: protein_coding
description:
  PFAM: nitrogen regulatory protein P-II; KEGG: bav:BAV1638 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.


ensembl_gene_id: Caka_2568
symbol: nuoB
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, B subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: Caka_2569
symbol: nuoC
gene_biotype: protein_coding
description:
  NADH dehydrogenase (ubiquinone) 30 kDa subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family.


ensembl_gene_id: Caka_2570
symbol: nuoD
gene_biotype: protein_coding
description:
  NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.


ensembl_gene_id: Caka_2571
symbol: Caka_2571
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_0482 NADH-quinone oxidoreductase, E subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit.


ensembl_gene_id: Caka_2572
symbol: Caka_2572
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, F subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.


ensembl_gene_id: Caka_2574
symbol: Caka_2574
gene_biotype: protein_coding
description:
  NADH dehydrogenase (quinone); KEGG: ote:Oter_0480 ferredoxin; PFAM: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; molybdopterin oxidoreductase.


ensembl_gene_id: Caka_2575
symbol: nuoH
gene_biotype: protein_coding
description:
  NADH dehydrogenase (quinone); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.


ensembl_gene_id: Caka_2576
symbol: nuoI
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: Caka_2577
symbol: Caka_2577
gene_biotype: protein_coding
description:
  NADH-ubiquinone/plastoquinone oxidoreductase chain 6; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: Caka_2578
symbol: nuoK
gene_biotype: protein_coding
description:
  NADH-ubiquinone oxidoreductase chain 4L; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family.


ensembl_gene_id: Caka_2579
symbol: Caka_2579
gene_biotype: protein_coding
description:
  TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; KEGG: ote:Oter_0475 proton-translocating NADH- quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein.


ensembl_gene_id: Caka_2580
symbol: Caka_2580
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_0474 proton-translocating NADH- quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I).


ensembl_gene_id: Caka_2581
symbol: nuoN
gene_biotype: protein_coding
description:
  Proton-translocating NADH-quinone oxidoreductase, chain N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family.


ensembl_gene_id: Caka_2583
symbol: Caka_2583
gene_biotype: protein_coding
description:
  PFAM: secretion protein HlyD family protein; KEGG: rba:RB146 cation efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Caka_2589
symbol: Caka_2589
gene_biotype: protein_coding
description:
  TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: ote:Oter_3688 O-acetylhomoserine/O- acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein.


ensembl_gene_id: Caka_2596
symbol: Caka_2596
gene_biotype: protein_coding
description:
  TIGRFAM: pyrimidine-nucleoside phosphorylase; KEGG: ote:Oter_2567 pyrimidine-nucleoside phosphorylase; PFAM: Pyrimidine nucleoside phosphorylase domain; Glycosyl transferase, family 3-like; glycosyl transferase family 3.


ensembl_gene_id: Caka_2598
symbol: efp
gene_biotype: protein_coding
description:
  Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.


ensembl_gene_id: Caka_2599
symbol: Caka_2599
gene_biotype: protein_coding
description:
  TIGRFAM: D-3-phosphoglycerate dehydrogenase; KEGG: ote:Oter_3521 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region.


ensembl_gene_id: Caka_2600
symbol: plsY
gene_biotype: protein_coding
description:
  Protein of unknown function DUF205; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.


ensembl_gene_id: Caka_2602
symbol: Caka_2602
gene_biotype: protein_coding
description:
  KEGG: wsu:WS0450 homoserine dehydrogenase; PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; amino acid-binding ACT domain protein.


ensembl_gene_id: Caka_2603
symbol: Caka_2603
gene_biotype: protein_coding
description:
  Putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; KEGG: bja:blr0855 hypothetical protein.


ensembl_gene_id: Caka_2605
symbol: Caka_2605
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3519 aspartate kinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; Belongs to the aspartokinase family.


ensembl_gene_id: Caka_2606
symbol: Caka_2606
gene_biotype: protein_coding
description:
  Arsenate reductase-related protein; PFAM: arsenate reductase and related; KEGG: avn:Avin_51030 nitrogenase-associated protein; Belongs to the ArsC family.


ensembl_gene_id: Caka_2607
symbol: Caka_2607
gene_biotype: protein_coding
description:
  TIGRFAM: threonine synthase; KEGG: ote:Oter_3518 threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit.


ensembl_gene_id: Caka_2609
symbol: Caka_2609
gene_biotype: protein_coding
description:
  KEGG: vvy:VVA0097 hypothetical protein; TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter.


ensembl_gene_id: Caka_2612
symbol: Caka_2612
gene_biotype: protein_coding
description:
  PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: ote:Oter_4031 Fmu (Sun) domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.


ensembl_gene_id: Caka_2613
symbol: greA
gene_biotype: protein_coding
description:
  GreA/GreB family elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.


ensembl_gene_id: Caka_2616
symbol: Caka_2616
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF900 hydrolase family protein; KEGG: rde:RD1_A0001 hypothetical protein.


ensembl_gene_id: Caka_2617
symbol: Caka_2617
gene_biotype: protein_coding
description:
  PFAM: Carbohydrate-selective porin OprB; KEGG: cps:CPS_0267 hypothetical protein; Belongs to the OprB family.


ensembl_gene_id: Caka_2622
symbol: Caka_2622
gene_biotype: protein_coding
description:
  PFAM: Carbohydrate-selective porin OprB; KEGG: dsh:Dshi_2290 carbohydrate-selective porin OprB; Belongs to the OprB family.


ensembl_gene_id: Caka_2627
symbol: Caka_2627
gene_biotype: protein_coding
description:
  KEGG: cyn:Cyan7425_1451 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_2634
symbol: Caka_2634
gene_biotype: protein_coding
description:
  KEGG: sse:Ssed_1771 phospholipase D/transphosphatidylase; PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase.


ensembl_gene_id: Caka_2639
symbol: Caka_2639
gene_biotype: protein_coding
description:
  Putative transcriptional regulator, Crp/Fnr family; KEGG: similar to protein kinase, cAMP-dependent, regulatory, type I, beta; PFAM: cyclic nucleotide-binding; Forkhead- associated protein; SMART: cyclic nucleotide-binding; Forkhead- associated protein.


ensembl_gene_id: Caka_2652
symbol: Caka_2652
gene_biotype: protein_coding
description:
  PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: mei:Msip34_0889 cobalamin synthesis protein P47K.


ensembl_gene_id: Caka_2653
symbol: Caka_2653
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: vha:VIBHAR_05254 oxidoreductase.


ensembl_gene_id: Caka_2655
symbol: xerC
gene_biotype: protein_coding
description:
  Integrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: Caka_2656
symbol: Caka_2656
gene_biotype: protein_coding
description:
  PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pmx:PERMA_1266 outer membrane protein C.


ensembl_gene_id: Caka_2658
symbol: Caka_2658
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: lch:Lcho_2791 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Caka_2659
symbol: Caka_2659
gene_biotype: protein_coding
description:
  TIGRFAM: alpha-L-glutamate ligase-like protein; KEGG: vfm:VFMJ11_0985 putative alpha-L-glutamate ligase family protein.


ensembl_gene_id: Caka_2664
symbol: Caka_2664
gene_biotype: protein_coding
description:
  Nucleoside transporter; KEGG: kpu:KP1_0794 putative Na+ dependent nucleoside transporter; TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter domain protein; Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family.


ensembl_gene_id: Caka_2666
symbol: vapC-2
gene_biotype: protein_coding
description:
  PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.


ensembl_gene_id: Caka_2668
symbol: Caka_2668
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: cyn:Cyan7425_1339 major facilitator superfamily MFS_1.


ensembl_gene_id: Caka_2669
symbol: pnp
gene_biotype: protein_coding
description:
  Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.


ensembl_gene_id: Caka_2670
symbol: rpsO
gene_biotype: protein_coding
description:
  Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.


ensembl_gene_id: Caka_2674
symbol: Caka_2674
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_1621 type II secretion system protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase.


ensembl_gene_id: Caka_2675
symbol: Caka_2675
gene_biotype: protein_coding
description:
  Nuclear protein SET; KEGG: lbf:LBF_2087 lysine methyltransferase; PFAM: nuclear protein SET; SMART: nuclear protein SET.


ensembl_gene_id: Caka_2682
symbol: Caka_2682
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: vsp:VS_II0095 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Caka_2685
symbol: Caka_2685
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; KEGG: pna:Pnap_2624 helix-turn-helix domain- containing protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_2691
symbol: Caka_2691
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2096 HhH-GPD family protein; PFAM: HhH-GPD family protein; iron-sulfur cluster loop; SMART: HhH-GPD family protein.


ensembl_gene_id: Caka_2692
symbol: thiC
gene_biotype: protein_coding
description:
  Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family.


ensembl_gene_id: Caka_2693
symbol: Caka_2693
gene_biotype: protein_coding
description:
  KEGG: chu:CHU_0239 sulfur transfer protein involved in thiamine biosynthesis; TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein.


ensembl_gene_id: Caka_2695
symbol: thiE
gene_biotype: protein_coding
description:
  Thiamine-phosphate diphosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.


ensembl_gene_id: Caka_2696
symbol: thiG
gene_biotype: protein_coding
description:
  Thiazole biosynthesis family protein; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.


ensembl_gene_id: Caka_2698
symbol: Caka_2698
gene_biotype: protein_coding
description:
  KEGG: phe:Phep_2471 thiazole biosynthesis protein ThiH; TIGRFAM: thiazole biosynthesis protein ThiH; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein.


ensembl_gene_id: Caka_2699
symbol: Caka_2699
gene_biotype: protein_coding
description:
  KEGG: sus:Acid_0755 UBA/ThiF-type NAD/FAD binding protein; PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; Rhodanese domain protein; SMART: Rhodanese domain protein.


ensembl_gene_id: Caka_2703
symbol: tuf
gene_biotype: protein_coding
description:
  Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.


ensembl_gene_id: Caka_2704
symbol: secE
gene_biotype: protein_coding
description:
  Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.


ensembl_gene_id: Caka_2705
symbol: nusG
gene_biotype: protein_coding
description:
  NusG antitermination factor; Participates in transcription elongation, termination and antitermination.


ensembl_gene_id: Caka_2706
symbol: rplK
gene_biotype: protein_coding
description:
  Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.


ensembl_gene_id: Caka_2707
symbol: rplA
gene_biotype: protein_coding
description:
  Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.


ensembl_gene_id: Caka_2708
symbol: rplJ
gene_biotype: protein_coding
description:
  Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.


ensembl_gene_id: Caka_2709
symbol: rplL
gene_biotype: protein_coding
description:
  Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.


ensembl_gene_id: Caka_2710
symbol: rpoB
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: Caka_2711
symbol: rpoC
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: Caka_2716
symbol: Caka_2716
gene_biotype: protein_coding
description:
  Plasmid maintenance system antidote protein, XRE family; TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: lpf:lpl1093 hypothetical protein; SMART: helix-turn-helix domain protein.


ensembl_gene_id: Caka_2718
symbol: Caka_2718
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF480; KEGG: ote:Oter_3715 hypothetical protein; Belongs to the UPF0502 family.


ensembl_gene_id: Caka_2720
symbol: Caka_2720
gene_biotype: protein_coding
description:
  PFAM: Lipocalin family protein; KEGG: ppd:Ppro_0126 lipocalin family protein; Belongs to the calycin superfamily. Lipocalin family.


ensembl_gene_id: Caka_2725
symbol: Caka_2725
gene_biotype: protein_coding
description:
  DNA mismatch endonuclease Vsr; May nick specific sequences that contain T:G mispairs resulting from m5C-deamination.


ensembl_gene_id: Caka_2727
symbol: Caka_2727
gene_biotype: protein_coding
description:
  KEGG: aba:Acid345_4264 DNA-cytosine methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.


ensembl_gene_id: Caka_2732
symbol: Caka_2732
gene_biotype: protein_coding
description:
  PFAM: histone deacetylase superfamily; KEGG: sru:SRU_2067 histone deacetylase/AcuC/AphA family protein.


ensembl_gene_id: Caka_2734
symbol: Caka_2734
gene_biotype: protein_coding
description:
  KEGG: jde:Jden_0164 peptidylprolyl isomerase; PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type.


ensembl_gene_id: Caka_2737
symbol: Caka_2737
gene_biotype: protein_coding
description:
  SNF2-related protein; KEGG: ote:Oter_3506 non-specific serine/threonine protein kinase; PFAM: SNF2-related protein; zinc finger SWIM domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.


ensembl_gene_id: Caka_2744
symbol: Caka_2744
gene_biotype: protein_coding
description:
  KEGG: met:M446_4572 glutamate--ammonia ligase; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp.


ensembl_gene_id: Caka_2746
symbol: Caka_2746
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_4570 protein serine/threonine phosphatase; PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein.


ensembl_gene_id: Caka_2747
symbol: Caka_2747
gene_biotype: protein_coding
description:
  PFAM: periplasmic solute binding protein; KEGG: rce:RC1_2459 periplasmic zinc-binding protein TroA; Belongs to the bacterial solute-binding protein 9 family.


ensembl_gene_id: Caka_2748
symbol: Caka_2748
gene_biotype: protein_coding
description:
  ABC transporter related protein; KEGG: rba:RB12438 manganese transport system ATP- binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Caka_2749
symbol: Caka_2749
gene_biotype: protein_coding
description:
  PFAM: ABC-3 protein; iron dependent repressor; KEGG: rba:RB12437 manganese ABC transporter permease protein.


ensembl_gene_id: Caka_2756
symbol: ilvA
gene_biotype: protein_coding
description:
  Pyridoxal-5'-phosphate-dependent protein beta subunit; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.


ensembl_gene_id: Caka_2759
symbol: Caka_2759
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF159; KEGG: hma:pNG6183 hypothetical protein; Belongs to the SOS response-associated peptidase family.


ensembl_gene_id: Caka_2761
symbol: tmk
gene_biotype: protein_coding
description:
  Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.


ensembl_gene_id: Caka_2764
symbol: Caka_2764
gene_biotype: protein_coding
description:
  PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ote:Oter_3324 biopolymer transport protein ExbD/TolR.


ensembl_gene_id: Caka_2766
symbol: Caka_2766
gene_biotype: protein_coding
description:
  KEGG: aca:ACP_3077 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.


ensembl_gene_id: Caka_2769
symbol: Caka_2769
gene_biotype: protein_coding
description:
  SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; KEGG: ote:Oter_0601 oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN domain protein; Radical SAM domain protein; Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: Caka_2770
symbol: Caka_2770
gene_biotype: protein_coding
description:
  Inorganic diphosphatase; PFAM: DRTGG domain protein; CBS domain containing protein; KEGG: ote:Oter_2673 putative manganese-dependent inorganic pyrophosphatase; SMART: CBS domain containing protein.


ensembl_gene_id: Caka_2777
symbol: Caka_2777
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bpt:Bpet3693 putative short chain dehydrogenase.


ensembl_gene_id: Caka_2779
symbol: Caka_2779
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: GE12026 gene product from transcript GE12026- RA; K06107 erythrocyte membrane protein band 4.1.


ensembl_gene_id: Caka_2784
symbol: Caka_2784
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; KEGG: cpi:Cpin_4858 response regulator receiver protein; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_2785
symbol: Caka_2785
gene_biotype: protein_coding
description:
  KEGG: amr:AM1_1618 zinc-binding dehydrogenase family oxidoreductase; TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily.


ensembl_gene_id: Caka_2786
symbol: Caka_2786
gene_biotype: protein_coding
description:
  PFAM: Antibiotic biosynthesis monooxygenase; KEGG: sfr:Sfri_1406 antibiotic biosynthesis monooxygenase.


ensembl_gene_id: Caka_2788
symbol: Caka_2788
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pin:Ping_2106 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Caka_2790
symbol: Caka_2790
gene_biotype: protein_coding
description:
  PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: swd:Swoo_2448 redoxin domain-containing protein.


ensembl_gene_id: Caka_2792
symbol: Caka_2792
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: vap:Vapar_0808 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Caka_2794
symbol: Caka_2794
gene_biotype: protein_coding
description:
  Potassium efflux system protein; KEGG: dps:DP1913 gluthatione-regulated K+/H+ efflux antiporter; TIGRFAM: potassium efflux system protein; PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.


ensembl_gene_id: Caka_2798
symbol: Caka_2798
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: bcl:ABC0239 RNA polymerase sigma factor SigW; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Caka_2799
symbol: Caka_2799
gene_biotype: protein_coding
description:
  PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: mar:MAE_12400 putative peptidase; Belongs to the peptidase S8 family.


ensembl_gene_id: Caka_2802
symbol: Caka_2802
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: pen:PSEEN2328 type II secretion pathway protein G, transport across outer membrane.


ensembl_gene_id: Caka_2804
symbol: mdh
gene_biotype: protein_coding
description:
  Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.


ensembl_gene_id: Caka_2805
symbol: mqo
gene_biotype: protein_coding
description:
  TIGRFAM: malate/quinone oxidoreductase; KEGG: pmy:Pmen_3677 malate:quinone oxidoreductase; PFAM: Malate:quinone-oxidoreductase.


ensembl_gene_id: Caka_2807
symbol: Caka_2807
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_0505 folate-binding protein YgfZ; TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; Belongs to the GcvT family.


ensembl_gene_id: Caka_2809
symbol: Caka_2809
gene_biotype: protein_coding
description:
  Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.


ensembl_gene_id: Caka_2810
symbol: leuC
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.


ensembl_gene_id: Caka_2811
symbol: Caka_2811
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.


ensembl_gene_id: Caka_2814
symbol: Caka_2814
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 2; KEGG: mxa:MXAN_5335 glycosyl transferase, group 2 family protein.


ensembl_gene_id: Caka_2815
symbol: Caka_2815
gene_biotype: protein_coding
description:
  Transcriptional regulator with PAS/PAC sensors, AraC family; TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein; helix-turn-helix- domain containing protein AraC type; KEGG: rba:RB9879 transcription regulator; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_2817
symbol: Caka_2817
gene_biotype: protein_coding
description:
  Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.


ensembl_gene_id: Caka_2820
symbol: Caka_2820
gene_biotype: protein_coding
description:
  KEGG: gox:GOX0200 ATP-dependent RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; Belongs to the DEAD box helicase family.


ensembl_gene_id: Caka_2823
symbol: Caka_2823
gene_biotype: protein_coding
description:
  KEGG: cja:CJA_3064 MFS transporter; TIGRFAM: sugar transporter; PFAM: General substrate transporter; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.


ensembl_gene_id: Caka_2824
symbol: Caka_2824
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_1793 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_2825
symbol: Caka_2825
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: dfe:Dfer_4330 transcriptional regulator, AraC family.


ensembl_gene_id: Caka_2828
symbol: Caka_2828
gene_biotype: protein_coding
description:
  PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: dat:HRM2_10580 hypothetical protein.


ensembl_gene_id: Caka_2829
symbol: Caka_2829
gene_biotype: protein_coding
description:
  KEGG: cch:Cag_1228 fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; helix-turn-helix Fis-type; SMART: AAA ATPase; GAF domain protein.


ensembl_gene_id: Caka_2831
symbol: Caka_2831
gene_biotype: protein_coding
description:
  PFAM: pyruvate carboxyltransferase; KEGG: cts:Ctha_1654 homocitrate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family.


ensembl_gene_id: Caka_2834
symbol: Caka_2834
gene_biotype: protein_coding
description:
  Radical SAM domain protein; KEGG: cph:Cpha266_0737 nitrogenase cofactor biosynthesis protein NifB; PFAM: Radical SAM domain protein; Dinitrogenase iron-molybdenum cofactor biosynthesis protein; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: Caka_2835
symbol: Caka_2835
gene_biotype: protein_coding
description:
  Nitrogenase; KEGG: cte:CT1539 nitrogenase iron-molybdenum cofactor biosynthesis protein NifN, putative; PFAM: oxidoreductase/nitrogenase component 1; Belongs to the NifD/NifK/NifE/NifN family.


ensembl_gene_id: Caka_2836
symbol: Caka_2836
gene_biotype: protein_coding
description:
  KEGG: cts:Ctha_1030 nitrogenase MoFe cofactor biosynthesis protein NifE; TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase component 1; Belongs to the NifD/NifK/NifE/NifN family.


ensembl_gene_id: Caka_2837
symbol: Caka_2837
gene_biotype: protein_coding
description:
  Nitrogenase molybdenum-iron protein beta chain; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family.


ensembl_gene_id: Caka_2838
symbol: Caka_2838
gene_biotype: protein_coding
description:
  TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; KEGG: pvi:Cvib_1346 nitrogenase molybdenum-iron protein alpha chain; PFAM: oxidoreductase/nitrogenase component 1.


ensembl_gene_id: Caka_2839
symbol: nifH
gene_biotype: protein_coding
description:
  Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.


ensembl_gene_id: Caka_2841
symbol: Caka_2841
gene_biotype: protein_coding
description:
  KEGG: afw:Anae109_0236 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase; Pyruvate-flavodoxin oxidoreductase, EKR domain; 4Fe-4S ferredoxin iron-sulfur binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding.


ensembl_gene_id: Caka_2842
symbol: Caka_2842
gene_biotype: protein_coding
description:
  PFAM: flavodoxin/nitric oxide synthase; KEGG: msl:Msil_2427 sulfite reductase (NADPH) flavoprotein, alpha chain.


ensembl_gene_id: Caka_2843
symbol: Caka_2843
gene_biotype: protein_coding
description:
  KEGG: gem:GM21_2137 NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase; PFAM: Dinitrogenase reductase ADP- ribosyltransferase.


ensembl_gene_id: Caka_2850
symbol: Caka_2850
gene_biotype: protein_coding
description:
  PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: ote:Oter_3490 surface antigen (D15).


ensembl_gene_id: Caka_2851
symbol: Caka_2851
gene_biotype: protein_coding
description:
  KEGG: amr:AM1_3596 MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE.


ensembl_gene_id: Caka_2853
symbol: uvrB
gene_biotype: protein_coding
description:
  Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]


ensembl_gene_id: Caka_2854
symbol: proB
gene_biotype: protein_coding
description:
  Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.


ensembl_gene_id: Caka_2855
symbol: frr
gene_biotype: protein_coding
description:
  Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.


ensembl_gene_id: Caka_2858
symbol: Caka_2858
gene_biotype: protein_coding
description:
  PFAM: Malate/L-lactate dehydrogenase; KEGG: ote:Oter_4260 malate/L-lactate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.


ensembl_gene_id: Caka_2859
symbol: Caka_2859
gene_biotype: protein_coding
description:
  PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: ote:Oter_4261 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding.


ensembl_gene_id: Caka_2861
symbol: Caka_2861
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ote:Oter_4291 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Caka_2862
symbol: Caka_2862
gene_biotype: protein_coding
description:
  KEGG: pjd:Pjdr2_1427 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_2867
symbol: Caka_2867
gene_biotype: protein_coding
description:
  Ribonuclease BN; KEGG: ote:Oter_2564 ribonuclease BN; TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN.


ensembl_gene_id: Caka_2870
symbol: Caka_2870
gene_biotype: protein_coding
description:
  Protein tyrosine phosphatase; KEGG: tel:tlr1810 low molecular weight phosphotyrosine protein; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight.


ensembl_gene_id: Caka_2871
symbol: Caka_2871
gene_biotype: protein_coding
description:
  TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.


ensembl_gene_id: Caka_2880
symbol: Caka_2880
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rba:RB2983 hydrogen peroxide-inducible genes activator; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Caka_2881
symbol: Caka_2881
gene_biotype: protein_coding
description:
  Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.


ensembl_gene_id: Caka_2882
symbol: Caka_2882
gene_biotype: protein_coding
description:
  KEGG: amc:MADE_01775 probable alkyl hydroperoxide reductase subunit F; TIGRFAM: alkyl hydroperoxide reductase, F subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Caka_2909
symbol: Caka_2909
gene_biotype: protein_coding
description:
  KEGG: dar:Daro_3427 integron integrase; TIGRFAM: integron integrase; PFAM: integrase family protein; Belongs to the 'phage' integrase family.


ensembl_gene_id: Caka_2912
symbol: Caka_2912
gene_biotype: protein_coding
description:
  KEGG: pca:Pcar_2866 cytochrome c nitrite reductase; PFAM: cytochrome c552; Belongs to the cytochrome c-552 family.


ensembl_gene_id: Caka_2913
symbol: Caka_2913
gene_biotype: protein_coding
description:
  KEGG: pca:Pcar_2867 cytochrome c nitrite reductase; TIGRFAM: cytochrome c nitrate reductase, small subunit; PFAM: NapC/NirT cytochrome c domain protein.


ensembl_gene_id: Caka_2914
symbol: hemL
gene_biotype: protein_coding
description:
  Glutamate-1-semialdehyde-2,1-aminomutase; KEGG: ote:Oter_3547 glutamate-1-semialdehyde-2,1- aminomutase; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III.


ensembl_gene_id: Caka_2915
symbol: nadE
gene_biotype: protein_coding
description:
  NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.


ensembl_gene_id: Caka_2916
symbol: Caka_2916
gene_biotype: protein_coding
description:
  Maf protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.


ensembl_gene_id: Caka_2919
symbol: aqpZ
gene_biotype: protein_coding
description:
  MIP family channel protein; Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity; Belongs to the MIP/aquaporin (TC 1.A.8) family.


ensembl_gene_id: Caka_2924
symbol: Caka_2924
gene_biotype: protein_coding
description:
  PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ami:Amir_3837 xylose isomerase domain protein TIM barrel.


ensembl_gene_id: Caka_2925
symbol: Caka_2925
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rba:RB6199 dehydrogenase-like protein.


ensembl_gene_id: Caka_2930
symbol: Caka_2930
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; KEGG: rba:RB9879 transcription regulator; PFAM: PAS fold-4 domain protein; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_2936
symbol: Caka_2936
gene_biotype: protein_coding
description:
  PFAM: Xylose isomerase domain protein TIM barrel; AP endonuclease 2 domain protein; KEGG: ote:Oter_1781 xylose isomerase domain- containing protein.


ensembl_gene_id: Caka_2943
symbol: Caka_2943
gene_biotype: protein_coding
description:
  TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: gau:GAU_3628 secretion protein HlyD family protein.


ensembl_gene_id: Caka_2944
symbol: Caka_2944
gene_biotype: protein_coding
description:
  PFAM: type II and III secretion system protein; KEGG: sde:Sde_3580 helix-turn-helix, AraC type; Belongs to the bacterial secretin family.


ensembl_gene_id: Caka_2945
symbol: Caka_2945
gene_biotype: protein_coding
description:
  Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.


ensembl_gene_id: Caka_2946
symbol: Caka_2946
gene_biotype: protein_coding
description:
  phosphoribosyl-AMP cyclohydrolase; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP; Belongs to the PRA-CH family.


ensembl_gene_id: Caka_2949
symbol: fabH
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.


ensembl_gene_id: Caka_2950
symbol: plsX
gene_biotype: protein_coding
description:
  Fatty acid/phospholipid synthesis protein PlsX; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.


ensembl_gene_id: Caka_2951
symbol: rpmF
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3599 ribosomal protein L32; TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; Belongs to the bacterial ribosomal protein bL32 family.


ensembl_gene_id: Caka_2953
symbol: uppP
gene_biotype: protein_coding
description:
  Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.


ensembl_gene_id: Caka_2954
symbol: trpD
gene_biotype: protein_coding
description:
  Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).


ensembl_gene_id: Caka_2955
symbol: glmM
gene_biotype: protein_coding
description:
  Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.


ensembl_gene_id: Caka_2959
symbol: trpF
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3474 phosphoribosylanthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); Belongs to the TrpF family.


ensembl_gene_id: Caka_2961
symbol: Caka_2961
gene_biotype: protein_coding
description:
  Fructose-bisphosphate aldolase, class II; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family.


ensembl_gene_id: Caka_2967
symbol: Caka_2967
gene_biotype: protein_coding
description:
  PFAM: Biopolymer transport protein ExbD/TolR; KEGG: amu:Amuc_0546 biopolymer transport protein ExbD/TolR.


ensembl_gene_id: Caka_2968
symbol: Caka_2968
gene_biotype: protein_coding
description:
  PFAM: Biopolymer transport protein ExbD/TolR; KEGG: aav:Aave_4551 biopolymer transport protein ExbD/TolR.


ensembl_gene_id: Caka_2976
symbol: nadA
gene_biotype: protein_coding
description:
  Quinolinate synthetase complex, A subunit; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.


ensembl_gene_id: Caka_2978
symbol: rpmI
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2354 ribosomal protein L35; TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.


ensembl_gene_id: Caka_2979
symbol: rplT
gene_biotype: protein_coding
description:
  Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.


ensembl_gene_id: Caka_2981
symbol: Caka_2981
gene_biotype: protein_coding
description:
  TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; KEGG: ote:Oter_4198 RpiB/LacA/LacB family sugar- phosphate isomerase; PFAM: Ribose/galactose isomerase.


ensembl_gene_id: Caka_2982
symbol: rpmG
gene_biotype: protein_coding
description:
  KEGG: min:Minf_0788 ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.


ensembl_gene_id: Caka_2984
symbol: Caka_2984
gene_biotype: protein_coding
description:
  ATPase-like, ParA/MinD; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.


ensembl_gene_id: Caka_2985
symbol: Caka_2985
gene_biotype: protein_coding
description:
  PFAM: WD40 domain protein beta Propeller; KEGG: ote:Oter_4587 periplasmic component of the Tol biopolymer transport system-like protein.


ensembl_gene_id: Caka_2989
symbol: glsA
gene_biotype: protein_coding
description:
  Glutaminase; KEGG: sus:Acid_0446 glutaminase; PFAM: Glutaminase, core; Belongs to the glutaminase family.


ensembl_gene_id: Caka_2991
symbol: Caka_2991
gene_biotype: protein_coding
description:
  TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: ote:Oter_3827 glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.


ensembl_gene_id: Caka_2992
symbol: pgk
gene_biotype: protein_coding
description:
  KEGG: cpf:CPF_1510 phosphoglycerate kinase; PFAM: phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.


ensembl_gene_id: Caka_2993
symbol: tpiA
gene_biotype: protein_coding
description:
  Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.


ensembl_gene_id: Caka_2995
symbol: Caka_2995
gene_biotype: protein_coding
description:
  Diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid; Belongs to the bacterial diacylglycerol kinase family.


ensembl_gene_id: Caka_2996
symbol: Caka_2996
gene_biotype: protein_coding
description:
  Three-deoxy-D-manno-octulosonic-acid transferase domain protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.


ensembl_gene_id: Caka_2997
symbol: Caka_2997
gene_biotype: protein_coding
description:
  tRNA/rRNA methyltransferase (SpoU); Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.


ensembl_gene_id: Caka_2998
symbol: ispG
gene_biotype: protein_coding
description:
  1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.


ensembl_gene_id: Caka_2999
symbol: Caka_2999
gene_biotype: protein_coding
description:
  TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; KEGG: ote:Oter_4633 membrane-associated zinc metalloprotease; SMART: PDZ/DHR/GLGF domain protein.


ensembl_gene_id: Caka_3000
symbol: dxr
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.


ensembl_gene_id: Caka_3002
symbol: Caka_3002
gene_biotype: protein_coding
description:
  Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.


ensembl_gene_id: Caka_3005
symbol: rpsP
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3099 ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.


ensembl_gene_id: Caka_3006
symbol: trmD
gene_biotype: protein_coding
description:
  tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.


ensembl_gene_id: Caka_3007
symbol: rplS
gene_biotype: protein_coding
description:
  Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.


ensembl_gene_id: Caka_3010
symbol: rph
gene_biotype: protein_coding
description:
  Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.


ensembl_gene_id: Caka_3012
symbol: Caka_3012
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_3706 DEAD/DEAH box helicase domain- containing protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; Belongs to the DEAD box helicase family.


ensembl_gene_id: Caka_3026
symbol: deoC
gene_biotype: protein_coding
description:
  Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.


ensembl_gene_id: Caka_3027
symbol: Caka_3027
gene_biotype: protein_coding
description:
  TIGRFAM: pyrimidine-nucleoside phosphorylase; KEGG: ote:Oter_1625 pyrimidine-nucleoside phosphorylase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like; Pyrimidine nucleoside phosphorylase domain.


ensembl_gene_id: Caka_3028
symbol: Caka_3028
gene_biotype: protein_coding
description:
  Inosine guanosine and xanthosine phosphorylase family; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.


ensembl_gene_id: Caka_3029
symbol: Caka_3029
gene_biotype: protein_coding
description:
  TIGRFAM: uracil phosphoribosyltransferase; KEGG: lsl:LSL_0593 uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; Belongs to the UPRTase family.


ensembl_gene_id: Caka_3031
symbol: mutL
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.


ensembl_gene_id: Caka_3034
symbol: Caka_3034
gene_biotype: protein_coding
description:
  TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: hor:Hore_05980 Tfp pilus assembly protein, pilus retraction ATPase PilT; SMART: AAA ATPase.


ensembl_gene_id: Caka_3035
symbol: argH
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_4045 argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase.


ensembl_gene_id: Caka_3036
symbol: Caka_3036
gene_biotype: protein_coding
description:
  Non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.


ensembl_gene_id: Caka_3037
symbol: pyrC-2
gene_biotype: protein_coding
description:
  Dihydroorotase, homodimeric type; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.


ensembl_gene_id: Caka_3039
symbol: Caka_3039
gene_biotype: protein_coding
description:
  TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: amu:Amuc_1291 putative surface layer protein, with cytochrome c domain.


ensembl_gene_id: Caka_3041
symbol: Caka_3041
gene_biotype: protein_coding
description:
  Phospholipid/glycerol acyltransferase; KEGG: geo:Geob_0075 AMP-dependent synthetase and ligase; PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; SMART: phospholipid/glycerol acyltransferase.


ensembl_gene_id: Caka_3042
symbol: purT
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase 2; Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate; Belongs to the PurK/PurT family.


ensembl_gene_id: Caka_3051
symbol: Caka_3051
gene_biotype: protein_coding
description:
  PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: ote:Oter_1928 6-phosphogluconate dehydrogenase NAD-binding.


ensembl_gene_id: Caka_3062
symbol: rsmH
gene_biotype: protein_coding
description:
  S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.


ensembl_gene_id: Caka_3065
symbol: Caka_3065
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2628 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain.


ensembl_gene_id: Caka_3066
symbol: murE
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramyl-tripeptide synthetase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.


ensembl_gene_id: Caka_3067
symbol: Caka_3067
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein.


ensembl_gene_id: Caka_3068
symbol: mraY
gene_biotype: protein_coding
description:
  phospho-N-acetylmuramoyl-pentapeptide-transferas e; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.


ensembl_gene_id: Caka_3069
symbol: Caka_3069
gene_biotype: protein_coding
description:
  TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; KEGG: ote:Oter_2633 UDP-N-acetylmuramoylalanine--D- glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein.


ensembl_gene_id: Caka_3070
symbol: Caka_3070
gene_biotype: protein_coding
description:
  KEGG: ach:Achl_4066 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.


ensembl_gene_id: Caka_3072
symbol: murG
gene_biotype: protein_coding
description:
  Undecaprenyldiphospho-muramoylpentapeptidebeta-N -acetylglucosaminyltransferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.


ensembl_gene_id: Caka_3076
symbol: ftsA
gene_biotype: protein_coding
description:
  Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.


ensembl_gene_id: Caka_3077
symbol: ftsZ
gene_biotype: protein_coding
description:
  Tubulin/FtsZ GTPase; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.


ensembl_gene_id: Caka_3103
symbol: Caka_3103
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: CYP714A1 (cytochrome P450, family 714, subfamily A, polypeptide 1); oxygen binding.


ensembl_gene_id: Caka_3115
symbol: Caka_3115
gene_biotype: protein_coding
description:
  KEGG: transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Caka_3117
symbol: Caka_3117
gene_biotype: protein_coding
description:
  KEGG: bfs:BF2899 hypothetical protein; PFAM: protein of unknown function DUF1565; Carbohydrate binding family 6; SMART: cellulose binding type IV.


ensembl_gene_id: Caka_3118
symbol: Caka_3118
gene_biotype: protein_coding
description:
  KEGG: sus:Acid_0871 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: serine/threonine protein kinase; Tyrosine- protein kinase, subgroup, catalytic domain.


ensembl_gene_id: Caka_3119
symbol: Caka_3119
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: rba:RB9437 RNA polymerase sigma factor Y; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Caka_3124
symbol: Caka_3124
gene_biotype: protein_coding
description:
  Sulfatase; KEGG: pat:Patl_0826 sulfatase; PFAM: sulfatase; Ig domain protein group 2 domain protein; SMART: Ig domain protein group 2 domain protein.


ensembl_gene_id: Caka_3125
symbol: Caka_3125
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_2496 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR.


ensembl_gene_id: Caka_3128
symbol: Caka_3128
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1555; KEGG: bur:Bcep18194_C7374 YadA/haemagluttinin like protein.


ensembl_gene_id: Caka_3132
symbol: aspS
gene_biotype: protein_coding
description:
  aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.


ensembl_gene_id: Caka_3134
symbol: Caka_3134
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1239; OstA family protein; KEGG: ote:Oter_4206 hypothetical protein.


ensembl_gene_id: Caka_3136
symbol: hprK
gene_biotype: protein_coding
description:
  HPr kinase; Catalyzes the ATP- as well as the pyrophosphate-dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK/P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P-Ser-HPr).


