# geneInfo

ensembl_gene_id: azo2255
symbol: azo2255
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to PA3081 of P.aeruginosa of 43% (trembl:Q9HZC7). Has pfam07044, DUF1329, Protein of unknown function (DUF1329). IPR010752; This family consists of several hypothetical bacterial proteins of around 475 residues in length. The majority of family members are from Pseudomonas species but the family also contains sequences from Shewanella oneidensis and Thauera aromatica. Signal Peptide present. No TMH being reported; Conserved hypothetical protein.


ensembl_gene_id: azo2256
symbol: azo2256
gene_biotype: protein_coding
description:
  Conserved hypothetical cytochrome c-552. Homology to Bcepa03004834 of Burkholderia cepacia of 38% (gi|46313246|ref|ZP_00213837.1|(NBCI ENTREZ)). InterPro: Cytochrome c class I (IPR003088). Pfam: cytochrome c. probable signal peptide. no TMHS; Conserved hypothetical protein.


ensembl_gene_id: azo2257
symbol: mauA
gene_biotype: protein_coding
description:
  Probable methylamine dehydrogenase. Homology to mauD of P. denifrificans of 45% (CAA67190) carries out the oxidation of methylamine. Electrons are passed from methylamine dehydrogenase to amicyanin. InterPro: Methylamine dehydrogenase L subunit (IPR004229) Pfam: Methylamine dehydrogenase, L chain signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo2258
symbol: mauD
gene_biotype: protein_coding
description:
  Probable methylamine utilization protein. My be specifically involved in the processing transport and/or maturation of the methylamine dehydrogenase beta-subunit. Tigrfam: dsbE: periplasmic protein thiol:disulfide Signal peptide probable 1 TMHs; Family membership.


ensembl_gene_id: azo2259
symbol: mauE
gene_biotype: protein_coding
description:
  Methylamine utilization protein mauE. Homology to mauE of M. extorquens of 37% (sprot|MAUE_METEX) MAY BE SPECIFICALLY INVOLVED IN THE PROCESSING TRANSPORT AND/OR MATURATION OF THE MADH BETA-SUBUNIT. no signal peptide probable 4 TMHs; Family membership.


ensembl_gene_id: azo2260
symbol: maub
gene_biotype: protein_coding
description:
  Methylamine dehydrogenase heavy chain precursor (MADH):- Methylamine dehydrogenase carries out the oxidation of methylamine. Electrons are passed from methylamine dehydrogenase to amicyanin. Entry name SWISSPROT:DHMH_METEX Prim. accession # Q49124 Identities = 100/339 (29%) Prediction: Signal peptide Signal peptide probability: 1.000 Number of predicted TMHs: 0; Family membership.


ensembl_gene_id: azo2263
symbol: azo2263
gene_biotype: protein_coding
description:
  Putative amino acid-binding protein. Homology to fliy of E. coli of 26% (AAC43545). PART OF A BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM FOR amino acids. InterPro: Bacterial extracellular solute-binding proteins family 3 (IPR1638); solute binding protein/glutamte receptor (IPR001311) Pfam: Bacterial extracellular solute-binding protein signal peptide no TMHS hisG: ATP phosphoribosyltransferase; Specificity unclear.


ensembl_gene_id: azo2264
symbol: azo2264
gene_biotype: protein_coding
description:
  Amino acid ABC transporter, permease protein, 75% Identity to TrEMBL;Q87UQ0, 65% Identity to TrEMBL;Q8XXK9,Q6F6T8. Has PF00528; IPR000515, BPD_transp; Bacterial binding protein-dependent transport systems are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown that most of these p [...]


ensembl_gene_id: azo2265
symbol: azo2265
gene_biotype: protein_coding
description:
  Conserved hypothetical amino acid permease. Homology to pspto5247 of P. syringae (trembl|Q87UP9). PART OF A BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM. PROBABLY RESPONSIBLE FOR THE TRANSLOCATION OF THE SUBSTRATE ACROSS THE MEMBRANE (BY SIMILARITY). Interpro: binding-protein-depenent transport system inner membrane component (IPR000515). Pfam: Binding-protein-dependent transport system. no signal peptide. 3 TMHs; Specificity unclear.


ensembl_gene_id: azo2266
symbol: glnQ2
gene_biotype: protein_coding
description:
  Probable glutamine transport ATP-binding protein. Homology with glnQ of B. stearothermophilus of 53% (sprot|GLNQ_BACST). PART OF THE BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM FOR GLUTAMINE. PROBABLY RESPONSIBLE FOR ENERGY COUPLING TO THE TRANSPORT SYSTEM. InterPro: AAA ATPase superfamily (IPR003593), ABC_Transporter (IPR003439), ATP/GTP_binding site motif A (P-loop) (IPR001687) Pfam: ABC transporter no signal peptide no TMHs mobB: molybdopterin-guanine dinucleotid; High confidence in function and specificity.


ensembl_gene_id: azo2267
symbol: gstB
gene_biotype: protein_coding
description:
  Probable Glutathione transferase. Homology to gstB of P. mirablilis of 29% (sprot|GT_PROMI). Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group. InterPro: Glutathione S-transferase N terminus(IPR004045), Glutathione S-transferase C terminus (IPR004046) Pfam: Glutathione S-transferase, N-terminale domaine no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo2268
symbol: azo2268
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to pp4833 of P. putida of 55% (trembl|Q88DJ2). no domains predicted. no signal peptide. 2 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo2269
symbol: azo2269
gene_biotype: protein_coding
description:
  Conserved hypothetical band 7 family protein. Homology to pp4834 of P.putida of 67% (trembl|Q88DJ1). InterPro: Band 7 protein (IPR001107). Pfam: SPFH domain / Band 7 family. The band 7 protein is an integral membrane protein which is thought to regulate cation conductance. A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. probable 1 TMH. probable signal peptide (overlapping with the TMH); Family membership.


ensembl_gene_id: azo2271
symbol: azo2271
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to Daro03003250 of Dechloromonas aromatica of 32% (gi|41723264|ref|ZP_00150207.1|(NBCI ENTREZ)). No domains predicted. No signal peptide. No TMHs.


ensembl_gene_id: azo2272
symbol: kup
gene_biotype: protein_coding
description:
  Putative potassium uptake protein; Transport of potassium into the cell; Belongs to the HAK/KUP transporter (TC 2.A.72) family.


ensembl_gene_id: azo2273
symbol: azo2273
gene_biotype: protein_coding
description:
  Conserved hypothetical protein:- Entry name:-TREMBL:Q89MA9 Prim. accession # Q89MA9 InterPro:-IPR000379; Ser_estrs. Identities = 120/294 (40%) Pfam:-Thioesterase domain Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0.


ensembl_gene_id: azo2274
symbol: sbp1
gene_biotype: protein_coding
description:
  Sulfate-binding protein precursor, Sbp. E.coli Sulfate starvation-induced protein 2,SSI2. This protein specifically binds sulfate and is involved in its transmembrane transport. InterPro: Prokaryotic sulfate-/thiosulfate-binding protein. In other bacteria Sbp is a periplasmic component of an ABC transport system. TIGR00363: lipoprotein YaeC family Signal peptide; High confidence in function and specificity.


ensembl_gene_id: azo2275
symbol: azo2275
gene_biotype: protein_coding
description:
  Putative glutamine amidotransferase; Hypothetical protein ycjL. TREMBL:Q890B8: 38% identity, 53% similarity. Glutamine amidotransferase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a pecific substrate, thus creating a new carbon-nitrogen group on the substrate. InterPro:IPR000991; GATase_1 PROSITE PS00442 GATASE_TYPE_I BLOCKS: BL00442 PFAM:PF00117 GATase; PF00310 GATase_2 trpG_papA: glutamine amidotransferase o No signal peptide (SignalP predicted) No transmembrane helices; High confidence in function and specificity.


ensembl_gene_id: azo2276
symbol: ybdK
gene_biotype: protein_coding
description:
  Glutamate-cysteine ligase; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.


ensembl_gene_id: azo2277
symbol: azo2277
gene_biotype: protein_coding
description:
  Conserved hypothetical Na/H antiporter. Homology to Bucepa03004091 of B.cepacia of 41% (gi|46320868|ref|ZP_00221251.1|(NBCI ENTREZ)). Has PF00999 Sodium/hydrogen exchanger family; IPR006153. Na/H antiporters are key transporters in maintaining the pH of actively metabolising cells. The molecular mechanisms of antiport are unclear. These antiporters contain 10-12 transmembrane regions (M) at the amino-terminus and a large cytoplasmic region at the carboxyl terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserv [...]


ensembl_gene_id: azo2278
symbol: azo2278
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to pa3943 of P. aeruginosa (TREMBL:Q9HX73). no domians predicted. weak evidence for signal peptide. no TMHs.


ensembl_gene_id: azo2279
symbol: azo2279
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to Avin02000067 of Azotobacter vinelandii of 50% (gi|23105742|ref|ZP_00092196.1|(NBCI ENTREZ)). InterPro: Ankyrin-repeat. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids.The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [...]


ensembl_gene_id: azo2280
symbol: azo2280
gene_biotype: protein_coding
description:
  Hypothetical protein 25% Identity to TrEMBL;Q7U749. No domains, repeats, motifs or features present.


ensembl_gene_id: azo2282
symbol: azo2282
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Identity to Daro_1071 of Dechloromonas aromatica of 41% (gi|71846331|gb|AAZ45827.1|). Pfam: CheW-like domain. CheW-like domain proteins are part of the chemotaxis signaling mechanism in bacteria. CheW interacts with the methyl accepting chemotaxis proteins (MCPs) and relays signals to CheY, which affects flageller rotation. This family includes CheW and other related proteins that are involved in chemotaxis. The CheW-like regulatory domain in CheA binds to CheW, suggesting that these domains can interact with each other.


ensembl_gene_id: azo2283
symbol: azo2283
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to TREMBL:Q92PT6 (40% identical); TREMBL:Q98MM5 (39% identical).


ensembl_gene_id: azo2284
symbol: azo2284
gene_biotype: protein_coding
description:
  Putative periplasmic substrate binding protein; Similar to TREMBL:Q9RBR1 (43% identity); TREMBL:Q8GN85 (42% identity); TREMBL:Q87NF7 (23% identity). SignalP predicting signal peptide; Specificity unclear.


ensembl_gene_id: azo2285
symbol: dctM3
gene_biotype: protein_coding
description:
  Putative TRAP-type C4-dicarboxylate transport system, large permease; The dct locus encodes a high-affinity transport system for the C4-dicarboxylates malate,succinate, and fumarate. 38% DctM.IPR000252; DedA.IPR004681; TRAP_transptDctM. Pfam:PF06808; DctM; 1.PF00597; DedA; 1. TIGRFAMs:TIGR00786; dctM; 1. Signal peptide:present. TMhelix:11; Specificity unclear.


ensembl_gene_id: azo2286
symbol: dctQ3
gene_biotype: protein_coding
description:
  TRAP-type C4-dicarboxylate transport system, small permease component. The dct locus encodes a high-affinity transport system for the C4-dicarboxylates malate,succinate, and fumarate.40% DctQ. Pfam:PF04290; DctQ; 1. TMHelix:3; Function unclear.


ensembl_gene_id: azo2287
symbol: azo2287
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to tll1086 of T.elongatus of 62% (trembl:Q8DJY4). No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo2289
symbol: azo2289
gene_biotype: protein_coding
description:
  Mg(2+) transport ATPase [mgtC family protein], 35% identity(54% similarity) to TrEMBL;Q7NTN3. Has PF02308,MgtC family;(IPR003416, MgtCSapB_transpt);The MgtC protein is found in an operon with the Mg2+ transporter protein MgtB. The function of MgtC and its homologues is not known, but it is thought that MgtC may act as an accessory protein for MgtB, thus mediating magnesium influx into the cytosol. Also included in this family are the Bacillus subtilis SapB protein and several hypothetical proteins. NO Signal Peptide or TMH present; Family membership.


ensembl_gene_id: azo2290
symbol: azo2290
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to hypothetical protein all0327 of Anabaena sp. of 52%. no signal peptid. no TMHs. No domains predicted.


ensembl_gene_id: azo2292
symbol: ada
gene_biotype: protein_coding
description:
  Methylated-DNA--[protein]-cysteine S-methyltransferase (6-O-methylguanine-DNA methyltransferase) (O-6-methylguanine-DNA-alkyltransferase) InterPro: Methylated-DNA--protein-cysteine methyltransferase; High confidence in function and specificity.


ensembl_gene_id: azo2293
symbol: alkB
gene_biotype: protein_coding
description:
  DNA-directed DNA polymerase; Alkylated DNA repair protein.Probably involved in the repair of alkylated DNA. Provides extensive resistance to alkylating agents.; High confidence in function and specificity.


ensembl_gene_id: azo2294
symbol: azo2294
gene_biotype: protein_coding
description:
  Putative Zinc carboxypeptidase-related protein, 45% identity to TrEMBL;Q6MKH4,Zinc carboxypeptidase-related protein (EC 3.4.17.-) [Bd2418] [Bdellovibrio bacteriovorus] Has pfam00246, Zn_carbOpept, Zinc carboxypeptidase domain; High confidence in function and specificity.


ensembl_gene_id: azo2295
symbol: azo2295
gene_biotype: protein_coding
description:
  Putative hydrolase; TREMBL:Q8EFJ6: 33% identity, 47% similarity. Probable Dihydrolipoamide acetyltransferase component of acetoin cleaving system (EC 2.3.1.12) (Acetoin dehydrogenase E2 component). Interpro:IPR000073; A/b_hydrolase (alpha/beta fold family). IPR000379; Ser_estrs. Pfam PF00561; Abhydrolase_1; 1 2a75: L-lysine exporter; Function unclear.


ensembl_gene_id: azo2296
symbol: phhB
gene_biotype: protein_coding
description:
  PHS (4-alpha-hydroxy-tetrahydropterin dehydratase) (Pterin carbinolamine dehydratase) (PCD). InterPro: Pterin 4 alpha carbinolamine dehydratase; High confidence in function and specificity.


ensembl_gene_id: azo2297
symbol: azo2297
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to RS05664 of R.solanacearum of 53% (trembl:Q8XQC7). No domains predicted. No signal peptide or TMH reported present.


ensembl_gene_id: azo2298
symbol: azo2298
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to PA1356 of Pseudomonas aeruginosa of 69% (trembl|Q9I3Y8(SRS)). No domains predicted. No signal peptide or TMH reported to be present.


ensembl_gene_id: azo2299
symbol: aidB1
gene_biotype: protein_coding
description:
  Aidb protein:-belongs to the acyl-coa dehydrogenase family. Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor. Entry name SWISSPROT:AIDB_ECOLI Prim. accession # P33224 Identities = 257/515 (49%) InterPro IPR006089; Acyl-CoA_dh. IPR006090; Acyl-CoA_dh_C. IPR006091; Acyl-CoA_dh_M. IPR006092; Acyl-CoA_dh_N. Pfam PF00441; Acyl-CoA_dh; 1. PF02770; Acyl-CoA_dh_M; 1. PF02771; Acyl-CoA_dh_N; 1 Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0; Family membership.


ensembl_gene_id: azo2300
symbol: azo2300
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to ORF428 of Roseateles depolymerans of 65% (trembl|Q9F206(SRS)). Pfam: Protein of unknown function (DUF1504). This family consists of several hypothetical bacterial proteins of around 440 residues in length. The function of this family is unknown. signal peptide. 10 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo2302
symbol: azo2302
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to Mll6421 of M.loti of 37% (trembl:Q989H3). Has PF02661, Fic protein family;IPR003812:This family consists of the Fic (filamentation induced by cAMP) protein and its relatives. The Fic protein is involved in cell division and is suggested to be involved in the synthesis of PAB or folate, indicating that the Fic protein and cAMP are involved in a regulatory mechanism of cell division via folate metabolism. This family contains a central conserved motif HPFXXGNG in most members. The exact molecular function of these proteins is uncertain. No sign [...]


ensembl_gene_id: azo2303
symbol: azo2303
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to Daro03002720 of Dechloromonas aromatica of 55% (gi|41723618|ref|ZP_00150528.1|(NBCI ENTREZ)). Permease,member of the Major Facilitator Superfamiliy (MFS)transporters.MFS are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Similar to proteins involved in tetracycline resistance. Hypothetical transport protein yhcA, from B.subtilis. InterPro: Drug resistance transporter EmrB/QacA subfamily efflux_EmrB: drug resistance transport. Signal peptide predicted. 13 TMH [...]


ensembl_gene_id: azo2304
symbol: azo2304
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR-family InterPro: Bacterial regulatory protein, MerR, Putative DNA binding HTH reporting nucleic acid binding motif.


ensembl_gene_id: azo2305
symbol: azo2305
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to CV1954 of Chromobacterium violaceum of 33% (trembl:Q7NWM9). No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo2306
symbol: azo2306
gene_biotype: protein_coding
description:
  Tyrosine recombinase xerD. Site-specific tyrosine recombinase which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from xerC binding sites by a short central region forming the heterotetrameric xerC-xerD complex that recombines DNA substrates. The complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. In the complex xerD specifically exchanges the [...]


ensembl_gene_id: azo2307
symbol: azo2307
gene_biotype: protein_coding
description:
  Hypothetical protein, 39% similarity to TrEMBL;Q8Z0Z1. No Signal Peptide or TMH present. TIGR00090: iojap-related protein.


ensembl_gene_id: azo2308
symbol: azo2308
gene_biotype: protein_coding
description:
  Putative helicase related protein; Hypothetical protein yjiV. TREMBL:Q8XC75: 33% identity, 49% similarity InterPro: IPR001410;DEAD/DEAH box helicase IPR001650; Helicase_C. Pfam: PF00270; DEAD; 1. PF00271; Helicase_C; 1. SMART: SM00487; DEXDc; 1. SM00490; HELICc L18_bact: ribosomal protein L18 No signal peptide No transmembrane helices; High confidence in function and specificity.


ensembl_gene_id: azo2309
symbol: azo2309
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. 61% identity to hypothetical protein Bucepa02000624 [Burkholderia cepacia R1808] (gi|46324486|ref|ZP_00224847.1|(NBCI ENTREZ)). NO Signal peptide or TMH reported present. no domains predicted.


ensembl_gene_id: azo2310
symbol: palZ
gene_biotype: protein_coding
description:
  Putative alpha-D-1,4-glucosidase; Alpha -D-1,4-glucosidase, PalZ. Involved in the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose. 55% Alpha_amyl_cat.IPR006589; Alp_amyl_cat_sub.IPR006046; Glyco_hydro_13. Pfam:PF00128; Alpha-amylase;1; High confidence in function and specificity.


ensembl_gene_id: azo2311
symbol: spr1
gene_biotype: protein_coding
description:
  Putative glucan 1,3-beta-glucosidase; Glucan 13-beta-glucosidase precursor (EC 3.2.1.58) (Exo-13-beta- glucanase).BETA-GLUCANASES PARTICIPATE IN THE METABOLISM OF BETA-GLUCAN THE MAIN STRUCTURAL COMPONENT OF THE CELL WALL. IT COULD ALSO FUNCTION BIOSYNTHETICALLY AS A TRANSGLYCOSYLASE. 33% Glyco_hydro_5. Pfam:PF00150; Cellulase; 1; High confidence in function and specificity; Belongs to the glycosyl hydrolase 5 (cellulase A) family.


ensembl_gene_id: azo2312
symbol: azo2312
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to Avin02002177 of Azotobacter vinelandii of 61% (gi|53611929|ref|ZP_00090985.2|(NBCI ENTREZ)). InterPro: ABC transporter (IPR003439). Pfam: ABC transporter. no signal peptide. 5 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo2313
symbol: glk2
gene_biotype: protein_coding
description:
  Glucokinase (EC 2.7.1.2) (Glucose kinase). Catalytic activity: ATP + d-glucose = ADP+ d-glucose 6-phosphate. 24% Glucokinase. Pfam:PF02685; Glucokinase; 1. TIGRFAMs:TIGR00749; glk; 1; High confidence in function and specificity; Belongs to the bacterial glucokinase family.


ensembl_gene_id: azo2316
symbol: msbA1
gene_biotype: protein_coding
description:
  Lipid A export ATP-binding/permease protein; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.


ensembl_gene_id: azo2317
symbol: azo2317
gene_biotype: protein_coding
description:
  Hypothetical protein predicted by Glimmer/Critica. No homology of the entire protein to the data bank. no dmains predicted. no signal peptide. no TMHs.


ensembl_gene_id: azo2318
symbol: azo2318
gene_biotype: protein_coding
description:
  Hypothetical membrane protein. homology to rsc2204 of R.solanacearum of 28% (trembl|Q8XXB2(SRS)). no domains predicted. no signal peptide. 10 TMHs.


ensembl_gene_id: azo2319
symbol: azo2319
gene_biotype: protein_coding
description:
  Glycosyltransferase; CMP-N-acetylneuraminate-beta-galactosamide-alpha- 23-sialyltransferase (EC 2.4.99.4) (Beta-galactoside alpha-23-sialyltransferase) (Alpha 23-ST) (Gal-NAc6S) (Gal-beta-13-GalNAc-alpha-23-sialyltransferase) (ST3GalIA) (ST3O) (ST3GalA.1) (SIAT4-A) (ST3Gal I). IT MAY BE RESPONSIBLE FOR THE SYNTHESIS OF THE SEQUENCE NEUAC-ALPHA-23-GAL-BETA-13-GALNAC- FOUND ON SUGAR CHAINS O-LINKED TO THR OR SER AND ALSO AS A TERMINAL SEQUENCE ON CERTAIN GANGLIOSIDES. SIAT4-A AND SIAT4-B SIALYLATE THE SAME ACCEPTOR SUBSTRATES BUT EXHIBIT DIFFERENT KM VALUES; Specificity unclear.


ensembl_gene_id: azo2320
symbol: azo2320
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to Rsph03001342 of Rhodobacter sphaeroides of 39% (gi|22957735|ref|ZP_00005426.1|(NBCI ENTREZ)). Has PF04230, Polysaccharide pyruvyl transferase;IPR007345 PS_pyruv_trans; Pyruvyl-transferases involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amyl [...]


ensembl_gene_id: azo2322
symbol: azo2322
gene_biotype: protein_coding
description:
  Glycosyltransferase; Hypothetical glycosyl transferase MJ1607 (EC 2.-.-.-). InterPro: Glycosyl transferases group 1; Specificity unclear.


ensembl_gene_id: azo2323
symbol: azo2323
gene_biotype: protein_coding
description:
  Glycosyltransferase; Lipopolysaccharide core biosynthesis glycosyl transferase lpsE (EC 2.-.-.-); Specificity unclear.


ensembl_gene_id: azo2324
symbol: azo2324
gene_biotype: protein_coding
description:
  Putative polysaccharide deacetylase; 29% Polysac_deacet. Pfam:PF01522; Polysacc_deac_1; 1; High confidence in function and specificity.


ensembl_gene_id: azo2325
symbol: azo2325
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to CV1439 of Chromobacterium violaceum of 58% (trembl:Q7NY36). No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo2327
symbol: cbl-2
gene_biotype: protein_coding
description:
  HTH-type transcriptional regulator cbl (Cys regulon transcriptional activator) Belongs to the LysR family of transcriptional regulators. THIS PROTEIN IS A POSITIVE REGULATOR OF GENE EXPRESSION FOR THE CYSTEINE REGULON. THE INDUCER FOR CYSB IS N-ACETYLSERINE (BY SIMILARITY). ribD_Cterm: riboflavin-specific deami 42% similarity to the HTH-type transcriptional regulator cbl, E. coli SWISSPROT:CBL_ECOLI IPR000847; HTH_LysR. IPR005119; LysR_subst. PF00126; HTH_1; 1. helix-turn-helix PF03466; LysR_substrate; 1. HTH reporting nucleic acid binding motif; High confidence in function and specificity.


ensembl_gene_id: azo2329
symbol: tonB2
gene_biotype: protein_coding
description:
  Periplasmic biopolymer transport protein linking inner and outer membranes; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.


ensembl_gene_id: azo2330
symbol: exbB4
gene_biotype: protein_coding
description:
  Putative biopolymer transport protein ExbB. Homology to exbB of B. pertussis of 36%. ExbB is part of the TonB-dependent transduction complex. The tonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane. Pfam: MotA/TolQ/ExbB proton channel family signal peptide most probable 4TMHs; Family membership.


ensembl_gene_id: azo2331
symbol: exbD5
gene_biotype: protein_coding
description:
  Putative biopolymer transport protein exbD. Homology to exbD of E. coli of 34%. ExbD is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane. InterPro: Biopolymer transport protein ExbD/TolR Pfam: Biopolymer transport protein ExbD/TolR no signal peptide probable 1 TMH; Family membership.


ensembl_gene_id: azo2332
symbol: exbD6
gene_biotype: protein_coding
description:
  Putative biopolymer transport protein. Homology to exbD1 of X. campestris of 31%. ExbD is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane. InterPro: Biopolymer transport protein ExbD/TolR Pfam: Biopolymer transport protein ExbD/TolR no signal peptide probable 1 TMH; Family membership.


ensembl_gene_id: azo2333
symbol: azo2333
gene_biotype: protein_coding
description:
  Membrane fusion protein; HlyD family secretion protein. The secretion of a number of proteins/molecules require the help of members belonging to the ABC transporter family and a membrane fusion protein belonging to the HlyD family, TREMBL:Q7WF48 (49% identity); TREMBL:Q881X8 (49% identity). Pfam (PF00529): HlyD family secretion protein. TMHMM reporting one transmembrane helix. TC (8.A.1): The Membrane Fusion Protein (MFP) Family; Family membership.


ensembl_gene_id: azo2334
symbol: azo2334
gene_biotype: protein_coding
description:
  RND efflux transporter, permease protein; AcrB/AcrD/AcrF family protein. Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer,SWISSPROT:P76399 (44% identity). Pfam (PF00873): AcrB/AcrD/AcrF family. TIGRFAM (TIGR00915): Hydrophobe/Amphiphile Efflux-1 (HAE1) Family protein. TIGRFAM (TIGR00914): Heavy metal efflux pump, CzcA family. TMHMM reporting 10 transmembrane helices. TC (2.A.6.2): The (Largely Gram-negative [...]


ensembl_gene_id: azo2335
symbol: azo2335
gene_biotype: protein_coding
description:
  RND efflux transporter, permease protein; AcrB/AcrD/AcrF family member. Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer, TREMBL:Q881X7 (44% identity); SWISSPROT:P76399 (48% identity). InterPro (IPR001036): Acriflavin resistance protein Pfam (PF00873): AcrB/AcrD/AcrF family. TIGRFAM (TIGR00915): Hydrophobe/Amphiphile Efflux-1 (HAE1) Family protein. TIGRFAM (TIGR00914): Heavy metal efflux pump, CzcA family.  [...]


ensembl_gene_id: azo2336
symbol: opcM1
gene_biotype: protein_coding
description:
  Putative outer membrane efflux protein. Homology to opcM of B. cepacia of 36%. Component of an efflux system that confers multiple antibiotic resistence. Pfam: outer membrane efflux protein signal peptide no TMHs; Family membership.


ensembl_gene_id: azo2337
symbol: azo2337
gene_biotype: protein_coding
description:
  Conserved hypothetical hydrogenase cytochrone b-type subunit. Homology to C. vinosum of 48% (trembl|Q46471). Involved in electron transfer from hydrogen to oxygen. Pfam: Nickel-dependent hydrogenase b-type cytochrome. probable signal peptide. probable 4 TMHs; Family membership.


ensembl_gene_id: azo2338
symbol: prc
gene_biotype: protein_coding
description:
  Tail-specific protease precursor (EC 3.4.21.102) (Protease Re) (PRC protein) (C-terminal processing peptidase). prc: carboxyl-terminal protease; High confidence in function and specificity; Belongs to the peptidase S41A family.


ensembl_gene_id: azo2339
symbol: cycA2
gene_biotype: protein_coding
description:
  Probable cytochrome c'. Homology to cycA of C. vinosum of 48% (sprot|CYCP_CHRVI). CYTOCHROME C IS THE MOST WIDELY OCCURRING BACTERIAL C-TYPE CYTOCHROME. CYTOCHROMES C ARE HIGH-SPIN PROTEINS AND THE HEME HAS NO SIXTH LIGAND. THEIR EXACT FUNCTION IS NOT KNOWN. InterPro: Cytochrome c class II (IPR002321) Pfam: Cytochrome c singal peptide no TMHs; Function unclear.


ensembl_gene_id: azo2340
symbol: azo2340
gene_biotype: protein_coding
description:
  Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway, TREMBL:Q8XBV0 (48% identity); TREMBL:Q8EI44 (45% identity). InterPro (IPR002925): Dienelactone hydrolase. InterPro (IPR000379): Esterase/lipase/thioesterase. Pfam (PF01738): Dienelactone hydrolase family. SignalP predicting signal peptide; Family membership.


ensembl_gene_id: azo2341
symbol: gnl
gene_biotype: protein_coding
description:
  Gluconolactonase precursor (D-glucono-delta-lactone lactonohydrolase).HYDROLYZES THE GLUCONOLACTONE FORMED BY GLUCOSE-FRUCTOSE OXIDOREDUCTASE AND THAT FORMED IN AEROBIC CONDITIONS BY THE GLUCOSE DEHYDROGENASE PRESENT. 30% SMP-30. Pfam:PF03758; SMP-30; 1. Signal peptide: present; High confidence in function and specificity.


ensembl_gene_id: azo2342
symbol: cc41
gene_biotype: protein_coding
description:
  Putative cytochrome c4. Homology to cc4 of A. vinelandii of 34% (sprot|CYC4_AZOVI). Diheme, high potential cytochrome c believed to be an intermediate electron donor to terminal oxidation systems. Pfam: cytochrome C signal peptide no TMHs; Family membership.


ensembl_gene_id: azo2343
symbol: bcp3
gene_biotype: protein_coding
description:
  Conserved hypothetical bacterioferritin comigratory protein homolog. Homology to bp1307 of B. pertussis of 43% (trembl|Q7VYL2). Pfam: AhpC/TSA family. signal peptide. no TMHs; Family membership.


ensembl_gene_id: azo2345
symbol: azo2345
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to RB5328 of Rhodopirellula baltica of 47% (trembl|Q7US09(SRS)). Signal Peptide present. No TMH reported Present. Has PF07394, Protein of unknown function (DUF1501);IPR010869;This family contains a number of hypothetical bacterial proteins of unknown function approximately 400 residues long; Conserved hypothetical protein.


ensembl_gene_id: azo2346
symbol: azo2346
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to RB6288 of Rhodopirellula baltica of 30% (trembl|Q7UQJ4(SRS)). No domains predicted. No TMHs. Signal P reporting signal peptide; Conserved hypothetical protein.


ensembl_gene_id: azo2347
symbol: fyuA
gene_biotype: protein_coding
description:
  Putative TonB-dependent receptor; Yersinia enterocolitica,iron-repressible outer membrane protein, FyuA. FyuA:RECEPTOR FOR THE BACTERIOCIN PESTICIN AND FOR THE SIDEROPHORE YERSINIABACTIN. TonB-dependent outer membrane receptor; Function unclear.


ensembl_gene_id: azo2348
symbol: azo2348
gene_biotype: protein_coding
description:
  Similar to a Rhodanese-related sulfurtransferase,PspE., PspE:Thiosulphate sulphurtransferase (2.8.1.1) is an enzyme which catalyzes the transfer of the sulphane atom of thiosulphate to cyanide, to form sulphite and thiocyanate.Involved in cyanide detoxification., Signal peptide present.,; Function unclear.


ensembl_gene_id: azo2349
symbol: azo2349
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to PA0435 of Pseudomonas aeruginosa of 35% (trembl|Q9I682(SRS)). No domains predicted. Signal peptide. 3 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo2350
symbol: azo2350
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to orf of Desulfovibrio vulgaris of 41% (tremblnew|AAS97780(SRS)). No domain predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo2351
symbol: arsC1
gene_biotype: protein_coding
description:
  Putative arsenate reductase (EC 1.20.4.1) (Arsenical pump modifier),; Family membership; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.


ensembl_gene_id: azo2352
symbol: arsR
gene_biotype: protein_coding
description:
  Putative regulatory protein arsR-family arsenical resistance operon repressor, smtB from Synechococcus PCC 7942, which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis; Family membership.


ensembl_gene_id: azo2353
symbol: arsC2
gene_biotype: protein_coding
description:
  Putative arsenate reductase,; Family membership; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.


ensembl_gene_id: azo2357
symbol: azo2357
gene_biotype: protein_coding
description:
  Probable amidase; Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-) (Glu-ADT subunit A). Furnishes a means for formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu- tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln); Family membership.


ensembl_gene_id: azo2359
symbol: azo2359
gene_biotype: protein_coding
description:
  Oxaloacetate tautomerase,41% identity to TrEMBL;O32183;YusQ protein [yusQ] [Bacillus subtilis subsp. subtilis str. 168]. Has PF01361;(IPR004370);Tautomerase enzyme;This family includes the enzyme 4-oxalocrotonate tautomerase Q01468 that catalyses the ketonisation of 2-hydroxymuconate to 2-oxo-3-hexenedioate. No Signal peptide or TMH reported present; Conserved hypothetical protein.


ensembl_gene_id: azo2361
symbol: azo2361
gene_biotype: protein_coding
description:
  Acetyl esterase:-has an esterase activity. triacetyl glycerol (triacetin) is a substrate of the enzyme. Entry name SWISSPROT:AES_ECOLI Prim. accession # P23872 Identities = 57/229 (24%) InterPro IPR002168; Lipolytic_enzyme. IPR000379; Ser_estrs. Pfam :-Thioesterase Prediction: Non-secretory protein Signal peptide probability: 0.233 Number of predicted TMHs: 0; Family membership.


ensembl_gene_id: azo2363
symbol: sbp2
gene_biotype: protein_coding
description:
  Sulfate-binding protein precursor, Sbp. 69% Sulphate_bind. IPR005669; Thiosulph_bind.InterPro: Prokaryotic sulfate-/thiosulfate-binding protein. TIGRFAMs:TIGR00971; 3a0106s03; 1. Belongs to the prokaryotic sulfate binding protein family. In other bacteria Sbp is a periplasmic component of an ABC transport system; High confidence in function and specificity.


ensembl_gene_id: azo2364
symbol: azo2364
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to bll5801 of B. japonicum of 57% (trembl|Q89I38(SRS)). No domains predicted. Signal P reporting signal peptide present. No TMH present; Conserved hypothetical protein.


ensembl_gene_id: azo2367
symbol: azo2367
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family,; Function unclear; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: azo2368
symbol: azo2368
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to RSc3335 of Ralstonia solanacearum of 52% (gnl|keqq|rso:RS02569(KEGG)). No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo2369
symbol: azo2369
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to Pflu02000368 of Pseudomonas fluorescens of 34% (gi|48732319|ref|ZP_00266062.1|(NBCI ENTREZ)). No domains predicted. No signal peptide. 4 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo2370
symbol: azo2370
gene_biotype: protein_coding
description:
  Hypothetical secreted protein. No domains predicted. No TMHs. Signal Peptide present. Weak homology with hits in the database.


ensembl_gene_id: azo2371
symbol: azo2371
gene_biotype: protein_coding
description:
  30S ribosomal protein S4, truncated. Homology of aa 1 to 108 with rpsD of N. europaea of 67% (sprot|RS4B_NITEU(SRS)). With S5 and S12 plays an important role in translational accuracy (By similarity). Pfam: Ribosomal protein S4/S9 n-terminal domain. no signal peptide. no TMHs; Family membership; Belongs to the universal ribosomal protein uS4 family.


ensembl_gene_id: azo2372
symbol: azo2372
gene_biotype: protein_coding
description:
  Hypothetical secreted protein. No homology with the data bank. No domains predicted. Signal peptide present. No TMHs.


ensembl_gene_id: azo2373
symbol: fecI
gene_biotype: protein_coding
description:
  Putative sigma-70 factor, ECF subfamily; FecI: belongs to the extracytoplasmic-function (ECF) sigma factor, which represent a subgroup of the sigma 70 family. The sigma factor is an initiation factor that promotes attachment of the RNA polymerase to specific initiation sites and then is released. Involved in iron metabolism; High confidence in function and specificity.


ensembl_gene_id: azo2374
symbol: fecR
gene_biotype: protein_coding
description:
  Putative transmembrane sensor; FecR is involved in regulation of iron dicitrate transport. In the absence of citrate FecR inactivates FecI. FecR is probably a sensor that recognizes iron dicitrate in the periplasm. Involved in iron metabolism; High confidence in function and specificity.


ensembl_gene_id: azo2375
symbol: fecA
gene_biotype: protein_coding
description:
  Ferric-citrate outer membrane receptor,FecA.Involved in the recognition and internalization of ferric-citrate in E.coli. SPECIFIC RECEPTOR FOR THE SIDEROPHORE FERRIC PSEUDOBACTIN 358. InterPro: TonB-dependent receptor protein; High confidence in function and specificity.


ensembl_gene_id: azo2376
symbol: azo2376
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to NE0537 of Nitrosomonas europaea of 40% (trembl|Q82WX0(SRS)). no domains predicted. signal peptide. 3 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo2377
symbol: azo2377
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Rhodanese, a sulphurtransferase involved in cyanide detoxification. Non-secretory protein. Probable Hypothetical protein RP600; Function unclear.


ensembl_gene_id: azo2378
symbol: azo2378
gene_biotype: protein_coding
description:
  Hypothetical protein, 38% identity (50% similarity) to TrEMBL;Q87X35 Has PF04336, Protein of unknown function,DUF479;IPR007431,This family includes several bacterial proteins of uncharacterised function; Function unclear.


ensembl_gene_id: azo2379
symbol: azo2379
gene_biotype: protein_coding
description:
  Hypothetical protein, 44% identity (54% similarity) to TrEMBL;Q82TM9. Has PF01636;Phosphotransferase enzyme family;IPR002575,APH_trans;This family consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:-aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation. Has PF03881,Fructosamine kinase;This family includes eukaryotic [...]


ensembl_gene_id: azo2381
symbol: azo2381
gene_biotype: protein_coding
description:
  Dolichyl-phosphate-mannose-protein mannosyltransferase; Conserved hypothetical protein. Extremely weak homology with hits in the Database spanning the entire length of protein. Has PF02366, Dolichyl-phosphate-mannose-protein mannosyltransferase; IPR003342,Glyco_trans_39:This is a family of Dolichyl-phosphate-mannose-protein mannosyltransferase proteins. These proteins are responsible for O-linked glycosylation of proteins, they catalyse the reaction:-Dolichyl phosphate D-mannose + protein <=> dolichyl phosphate + O-D-mannosyl-protein. Also in this family is Q94891 Drosophila rotated ab [...]


ensembl_gene_id: azo2382
symbol: azo2382
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to TdenA01002104 of Thiobacillus denitrificans of 56% (gi|52006510|ref|ZP_00333890.1|(NBCI ENTREZ)). No domains predicted. Signal P repoting a signal peptide present. NO TMH being present; Conserved hypothetical protein.


ensembl_gene_id: azo2383
symbol: azo2383
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to rsp0720 of R. solanacearum of 43% (trembl|Q8XRW1(SRS)). Pfam: FMN_binding domain. This conserved region includes the FMN-binding site of the NqrC protein as well as the NosR and NirI regulatory proteins. Siganl peptide. no TMHs.


ensembl_gene_id: azo2384
symbol: azo2384
gene_biotype: protein_coding
description:
  Conserved hypothetical ApbE family protein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.


ensembl_gene_id: azo2385
symbol: azo2385
gene_biotype: protein_coding
description:
  Hypothetical membrane protein. No homology of the entire protein to the data bank. No domains predicted. signal peptide. 3 TMHs.


ensembl_gene_id: azo2386
symbol: azo2386
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to BB4221 of Bordetella bronchiseptica of 32% (trembl|Q7WFQ0). Has PF07331, Protein of unknown function (DUF1468);IPR009936;This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown. Signal peptide. 3 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo2387
symbol: azo2387
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to an orf of R. palustris of 63% (tremblnew|CAE27761(SRS)). Has PF01970, Integral membrane protein DUF112;IPR002823:Members of this prokaryotic family have no known function. no signal peptide. 10 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo2388
symbol: azo2388
gene_biotype: protein_coding
description:
  Hypothetical membrane protein. no homology of the entire protein to the data bank. no domain predicted. no signal peptide. 4 TMHs.


ensembl_gene_id: azo2389
symbol: ssuF
gene_biotype: protein_coding
description:
  Probable Molybdenum-pterin binding protein II. Organosulfonate utilization protein SsuF InterPro: Molybdenum-pterin binding domain TIGRFAM: Mop: molybdenum-pterin binding domain; High confidence in function and specificity.


ensembl_gene_id: azo2390
symbol: azo2390
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to Daro03001711 of Dechloromonas aromatica of 36% (gi|53730477|ref|ZP_00348804.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo2391
symbol: tauA
gene_biotype: protein_coding
description:
  Putative sulfonate transport system, periplasmic component; Part of the ABC transporter complex tauABC involved in taurine as a sulfur source import. Similar to the putative aliphatic sulfonates periplasmic-binding protein tauA in E.coli. Probably also involved in nitrate and bicarbonate transport; Function unclear.


ensembl_gene_id: azo2392
symbol: tauB
gene_biotype: protein_coding
description:
  Putative sulfonate transport system, ATP-binding protein; Part of the ABC transporter complex tauABC involved in taurine import as a sulfur source.Probably responsible for energy coupling to the transport system.Similar to the aliphatic sulfonate transport membrane protein, tauB in E.coli. Probably also involved in nitrate and bicarbonate transport; High confidence in function and specificity.


ensembl_gene_id: azo2393
symbol: tauC
gene_biotype: protein_coding
description:
  Putative sulfonate transport system, permease protein; Part of the ABC transporter complex tauABC involved in taurine import as sulfur source. Probably responsible for the translocation of the substrate across the membrane.Similar to the aliphatic sulfonate permease protein, tauC in E.coli. Probably also involved in nitrate and bicarbonate transport; High confidence in function and specificity.


ensembl_gene_id: azo2394
symbol: azo2394
gene_biotype: protein_coding
description:
  Hypothetical membrane protein. Homology to COG2143 from 114 aa to 228 aa. InterPro: Thioredoxin (IPR006662). no signal peptide. 1 TMH.


ensembl_gene_id: azo2395
symbol: phaE
gene_biotype: protein_coding
description:
  Phenylacetate-coenzyme A ligase (PA-CoA ligase).Coenzyme F390 synthase. CATALYZES THE ACTIVATION OF PHENYLACETIC ACID TO PHENYLACETYL-COA. InterPro: AMP-dependent synthetase and ligase; High confidence in function and specificity.


ensembl_gene_id: azo2396
symbol: azo2396
gene_biotype: protein_coding
description:
  Putative outer membrane TonB-dependent receptor protein. 43% TonB_receptor. Pfam:PF00593; TonB_dep_Rec; 1; Function unclear.


ensembl_gene_id: azo2398
symbol: azo2398
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to rsc1344 of R. solanacearum of 42% (trembl|Q8XZQ1). no domains predicted. no signal peptide. no TMHs.


ensembl_gene_id: azo2399
symbol: cysK
gene_biotype: protein_coding
description:
  Cysteine synthase A,; High confidence in function and specificity; Belongs to the cysteine synthase/cystathionine beta- synthase family.


ensembl_gene_id: azo2400
symbol: azo2400
gene_biotype: protein_coding
description:
  Putative TonB outer membrane receptor protein.31% TonB_boxC. Pfam:PF00593; TonB_dep_Rec; 1. Signal peptide present; Function unclear.


ensembl_gene_id: azo2401
symbol: azo2401
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to rsp0812 of R. solanacearum of 30% (trembl|Q8XRL9). no damians predicted. signal peptide. no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo2405
symbol: ohr
gene_biotype: protein_coding
description:
  Probable organic hydroperoxide resistance protein. Homology to ohr of X. campestris of 50% (SWISSPROT:OHR_XANAC). Organic hydroperoxide detoxification protein. Confers increased resistance to tert-butyl hydroperoxide killing. InterPro: OsmC-like protein (IPR003718) Pfam: OsmC-like protein no signal peptide no TMH; High confidence in function and specificity.


ensembl_gene_id: azo2406
symbol: azo2406
gene_biotype: protein_coding
description:
  Conserved hypothetical pyruvate ferredoxin/flavodoxin oxidoreductase. Homology to bb4375 of B. bronchiseptica (trembl|Q7WFA5). CATALYZES THE FERREDOXIN-DEPENDENT OXIDATIVE DECARBOXYLATION OF ARYLPYRUVATES (BY SIMILARITY). Pfam: Pyruvate ferredoxin/flavodoxin oxidoreductase. no signal peptide. no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo2407
symbol: bkdR
gene_biotype: protein_coding
description:
  Bkd operon transcriptional regulator, similarity to SWISSPROT: (38% Pseudomonas putida, bkd operon transcriptional regulator BdkR) InterPro: IPR000485 HTH_AsnC_lrp. Pfam: PF01037 AsnC family. HTH reporting nucleic acid binding motif; High confidence in function and specificity.


ensembl_gene_id: azo2409
symbol: azo2409
gene_biotype: protein_coding
description:
  Conserved hypothetical sodium:solute sympoter. Homology to bb3915 of B. bronchiseptica of 57% (trembl|Q7WCM0). Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The solutes transported may be sugars, amino acids, nucleosides, inositols, vitamins,urea or anions, depending on the system. Tigrfam: sss: SSS sodium so [...]


ensembl_gene_id: azo2410
symbol: azo2410
gene_biotype: protein_coding
description:
  DNA polymerase III epsilon chain-like protein (EC 2.7.7.7). DNA POLYMERASE III IS A COMPLEX MULTICHAIN ENZYME RESPONSIBLE FOR MOST OF THE REPLICATIVE SYNTHESIS IN BACTERIA. THE EPSILON SUBUNIT CONTAIN THE EDITING FUNCTION AND IS A PROOFREADING 3-5 EXONUCLEASE (BY SIMILARITY). dnaq: DNA polymerase III epsilon sub; Family membership.


ensembl_gene_id: azo2411
symbol: yycF
gene_biotype: protein_coding
description:
  Transcriptional regulatory protein yycF. Member of the two-component regulatory system yycG/yycF involved in the regulation of the ftsAZ operon. Binds to the ftsAZ P1 promoter sequence. Similar to SWISSPROT: sprot|YYCF_BACSU (50% Bacillus subtilis, transcriptional regulatory protein YycF) / sprot|PHOP_BACSU (47% Bacillus subtilis, alkaline phosphatase synthesis transcriptional regulatory protein PhoP) InterPro: IPR001789 Response_reg. Pfam: PF00072 Response_reg; Specificity unclear.


ensembl_gene_id: azo2412
symbol: azo2412
gene_biotype: protein_coding
description:
  Sensor histidine kinase mtrB (EC 2.7.3.-). Member of the two-component regulatory system mtrA/mtrB. Seems to function as a membrane-associated protein kinase that phosphorylates mtrA in response to environmental signals (By similarity). TREMBLnew:AAS80811; TREMBL:Q8PEZ5, 42% identity, 59% similarity; Pfam: Histidine kinase _,Phosphoacceptor domain. TIGRFAM: sss: sodium solute transporter sup. TMHMM predicted transmembrane helices. sss: SSS sodium solute transporter sup; Specificity unclear.


ensembl_gene_id: azo2413
symbol: azo2413
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homolgy to ttc0464 of T. thermophilus of 46% (tremble:Q72K63). no domains predicted. singal peptide. 1 TMH; Conserved hypothetical protein.


ensembl_gene_id: azo2414
symbol: acsB
gene_biotype: protein_coding
description:
  Probable acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.


ensembl_gene_id: azo2415
symbol: fumB
gene_biotype: protein_coding
description:
  Putative fumarate hydratase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.


ensembl_gene_id: azo2417
symbol: nnrS
gene_biotype: protein_coding
description:
  NnrS is a putative heme-Cu protein and a member of the short-chain dehydrogenase family, probably involved in the nitric oxide metabolism. Genes encoding putative orthologues of NnrS are sometimes but not always found in bacteria encoding nitrite and/or nitric oxide reductase. 40% NnrS. TMhelix:10 Pfam:PF05940; NnrS; 1; Function unclear.


ensembl_gene_id: azo2418
symbol: gapB
gene_biotype: protein_coding
description:
  D-erythrose 4-phosphate dehydrogenase(E4PDH), GapB protein. Could play a role in pyridoxal 5-phosphate synthesis.Involved in the reaction: d-erythrose 4-phosphate + nad(+) = 4-phosphoerythronate + nadh. 51% E4PD_g-proteo.IPR000173; GAP_dhdrogenase. Pfam:PF00044; gpdh; 1.PF02800; gpdh_C; 1. TIGR00274: glucokinase regulator-relate. TIGRFAMs:TIGR01532; E4PD_g-proteo; 1; High confidence in function and specificity.


ensembl_gene_id: azo2419
symbol: nahR1
gene_biotype: protein_coding
description:
  LysR-type transcriptional regulator NahR. Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes. Belongs to the LysR family of transcriptional regulators. Similar to SWISSPROT: sprot|NAHR_PSEPU (40% Pseudomonas putida, hth-type transcriptional activator NahR) Pfam: PF00126 Bacterial regulatory helix-turn-helix protein, lysR family. HTH reporting nucleic acid binding motif; Specificity unclear.


ensembl_gene_id: azo2420
symbol: nagI
gene_biotype: protein_coding
description:
  Gentisate 1,2-dioxygenase; Involved in catabolism of naphthalene via gentisate to fumarate and pyruvate. NagI is a gentisate 1,2-dioxygenase which converts gentisate to maleylpyruvate. Similar to TREMBL:O86041 (66% identity); TREMBL:Q8X655 (30% identity); TREMBL:Q8Y0F7 (33% identity); High confidence in function and specificity.


ensembl_gene_id: azo2421
symbol: nagK
gene_biotype: protein_coding
description:
  Fumarylpyruvate hydrolase; Involved in catabolism of naphthalene via gentisate to fumarate and pyruvate. NagK is a fumarylpyruvate hydrolase which hydrolyzes fumarylpyruvate to fumarate and pyruvate. Similar to TREMBL:O86042 (67% identity); TREMBL:O07877 (63% identity); TREMBL:Q8G387 (50% identity). Pfam (PF01557): Fumarylacetoacetate (FAA) hydrolase family; High confidence in function and specificity.


ensembl_gene_id: azo2422
symbol: nahG
gene_biotype: protein_coding
description:
  Salicylate hydroxylase (EC 1.14.13.1) (Salicylate 1-monooxygenase). Similar to TREMBL:Q8Z5B1 (62% identity); TREMBL:Q8X657 (62% identity); TREMBL:Q8ZNM3 (62% identity). Pfam (PF01360): Monooxygenase. TMHMM reporting one transmembrane helix; High confidence in function and specificity.


ensembl_gene_id: azo2423
symbol: nagL1
gene_biotype: protein_coding
description:
  Maleylpyruvate isomerase. Homology to nogL of Ralstonia sp U of 73% (AAD12621) NagL is a reduced glutathione-dependent maleylpyruvate isomerase catalyzing the isomerization of maleylpyruvate to fumarylpyruvate. InterPro: Glutathione S-transferase N terminus (IPR004045) Pfam: Glutathione S-transferase, N-terminale domaine no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo2424
symbol: dctP3
gene_biotype: protein_coding
description:
  Putative C4-dicarboxylate-binding periplasmic protein; TRAP-dicarboxylate transporter. Binds c4-dicarboxylates; part of the binding-protein-dependent transport system for uptake of C4-dicarboxylates. 23% TRAP_transptDctP. Pfam:PF03480; SBP_bac_7; 1. TIGRFAMs:TIGR00787; dctP; 1. Signal peptide: present; Specificity unclear.


ensembl_gene_id: azo2425
symbol: dctQ4
gene_biotype: protein_coding
description:
  TRAP-type C4-dicarboxylate transport system, small permease component. The dct locus encodes a high-affinity transport system for the C4-dicarboxylates malate,succinate, and fumarate. 22% DctM.IPR007387; DctQ.IPR000252; DedA.IPR004681; TRAP_transptDctM. Pfam:PF06808; DctM; 1.PF04290; DctQ; 1.PF00597; DedA; 1. TIGRFAMs:TIGR00786; dctM; 1; Specificity unclear.


ensembl_gene_id: azo2426
symbol: dctM4
gene_biotype: protein_coding
description:
  Similar to a putative large integral C4-dicarboxylate membrane transport protein from W. succinogenes.DctM: TRAP dicarboxylate transporter. TREMBL:Q9ZEJ2 InterPro:IPR010656; DctM.IPR000252; DedA.IPR000524; HTH_GntR.IPR004681; TRAP_transptDctM. Pfam:PF06808; DctM; 1.PF00597; DedA; 1. TIGRFAMs:TIGR00786; dctM; 1. TMHelix: 12. Signal peptide:present; Specificity unclear.


ensembl_gene_id: azo2427
symbol: azo2427
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to BB1720 of Bordetella bronchiseptica of 32% (trembl|Q7WLM5). Has PF03992, Antibiotic biosynthesis monooxygenase;IPR007138;This domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species. It's occurrence as a repeat in Streptomyces coelicolor SCO1909 (Q9X9W3) is suggestive that the other proteins function as multimers. There is also a conserved histidine which is likely to be an active site residue. TMHMM2 reporting 2 TMH's Present. No Signal Peptide present; Conserved hypothetical protein.


ensembl_gene_id: azo2428
symbol: azo2428
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to an orf of T. aromatica of 48% (trembl|Q7B0A2). no domains. signal peptide. no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo2429
symbol: nahJ
gene_biotype: protein_coding
description:
  4-oxalocrotonate tautomerase (EC 5.3.2.-) (4-OT). Catalyzes the ketonization of 2-hydroxymuconate stereoselectively to yield 2-oxo-3-hexenedioate. SPROT:Q9RHM8: 80% identity; 88% similarity InterPro: 4-oxalocrotonate tautomerase InterPro:IPR004370; Taut. ProDom: PD404143; Taut Pfam; PF01361; Tautomerase; 1. taut: 4-oxalocrotonate tautomerase helixturnhelix: reporting nucleic acid binding motif No transmembrane helices; High confidence in function and specificity.


ensembl_gene_id: azo2430
symbol: nahK
gene_biotype: protein_coding
description:
  4-Oxalocrotonate decarboxylase; Similar to TREMBL:Q93JW1 (67% identity); TREMBL:Q9RHN0 (67% identity); SWISSPROT:P49155 (59% identity). Pfam (PF01689): Hydratase/decarboxylase; High confidence in function and specificity.


ensembl_gene_id: azo2432
symbol: nahO
gene_biotype: protein_coding
description:
  Acetaldehyde dehydrogenase; Involved in naphthalene degradation. Similar to TREMBL:Q52039 (83% identity); TREMBL:Q9ZI57 (76% identity); SWISPROT:P77580 (52% identity). InterPro (IPR003361): Acetaldehyde dehydrogenase Pfam (PF02396): Acetaldehyde dehydrogenase; High confidence in function and specificity.


ensembl_gene_id: azo2433
symbol: azo2433
gene_biotype: protein_coding
description:
  The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases,TREMBL:Q8XUP8 (61% identity); TREMBL:Q9I400 (57% identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR) superfamily. InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase; Specificity unclear.


ensembl_gene_id: azo2434
symbol: nahL
gene_biotype: protein_coding
description:
  2-oxopent-4-enoate hydratase; Conversion of 2-hydroxypent-2,4-dienoate into 4-hydroxy-2-oxopentanoate. Meta-cleavage pathway for the degradation of phenols, cresols and catechol. Belongs to the todj/xyli/xylj/hpcg family. Similar to TREMBL:Q93JW5 (75% identity); TREMBL:Q9ZI58 (65% identity); SWISSPROT:P23107 (73% identity). InterPro (IPR002607): Hydratase/decarboxylase Pfam (PF01689): Hydratase/decarboxylase; High confidence in function and specificity.


ensembl_gene_id: azo2435
symbol: nahI
gene_biotype: protein_coding
description:
  2-hydroxymuconic semialdehyde dehydrogenase (HMSD). Homology to nahI of P. stutzeri of 73% (TREMBL:Q9S602) 2-HYDROXYMUCONIC ACID SEMIALDEHYDE CAN BE CONVERTED TO 2-HYDROXYPENT-24-DIENOATE EITHER DIRECTLY BY THE ACTION OF 2-HYDROXYMUCONIC SEMIALDEHYDE HYDROLASE (HMSH) OR BY THE ACTION OF THREE SEQUENTIAL ENZYMES THE FIRST OF WHICH IS HMSD. InterPro: Aldehyde dehydrogenase family (IPR002086) Pfam: Aldehyde dehydrogenase family no signal peptide no TMHs proA: gamma-glutamyl phosphate reductas.


ensembl_gene_id: azo2436
symbol: azo2436
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to orf4 of P. putida of 59% (trembl|Q93JW8). Pfam: DUF336. This family contains uncharacterised sequences, including several GlcG proteins. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity. no signal peptide. no TMHs.


ensembl_gene_id: azo2438
symbol: lapB2
gene_biotype: protein_coding
description:
  Catechol 2,3-dioxygenase (metapyrocatechase); In Pseudomonas sp. strain KL28 the genes,designated as lap (for long-chain alkylphenols), encoding enzymes for the catabolic 3- and 4-alkylphenol degradation pathway. Catechol 2,3-dioxygenase LapB,; High confidence in function and specificity.


ensembl_gene_id: azo2439
symbol: poxF
gene_biotype: protein_coding
description:
  Probable phenol hydroxylase (EC 1.14.13.7) (Phenol 2-monooxygenase P5 component). Probable electron transfer from NADPH via FAD and the 2Fe-2S center to the oxygenase activity site of the enzyme. InterPro: Oxidoreductase FAD and NAD(P)-binding domain hisT_truA: tRNA pseudouridine synthase A; Specificity unclear.


ensembl_gene_id: azo2440
symbol: poxE
gene_biotype: protein_coding
description:
  Probable phenol hydroxylase, subunit P4; Pseudomonas sp. phenol hydroxylase P4 protein (EC 1.14.13.7, (phenol 2-monooxygenase P4 component). CATABOLIZES PHENOL AND SOME OF ITS METHYLATED DERIVATIVES. P4 IS REQUIRED FOR GROWTH ON PHENOL AND FOR IN VITRO PHENOL HYDROXYLASE ACTIVITY; High confidence in function and specificity.


ensembl_gene_id: azo2441
symbol: poxD
gene_biotype: protein_coding
description:
  Probable phenol hydroxylase subunit,68% identity(84% similarity) to trEMBL:Q9RAF6,Phenol hydroxylase component [phyC] [Ralstonia sp. KN1]. TrEMBL;Q9ZNP4 Has PF02332:Methane/Phenol/Toluene Hydroxylase;IPR003430;Bacterial phenol hydroxylase (EC: 1.14.13.7) is a multicomponent enzyme that catabolises phenol and some of its methylated derivatives. This family contains both the P1 and P3 polypeptides of phenol hydroxlase and the alpha and beta chain of methane hydroxylase protein A. Methane hydroxylase protein A (EC: 1.14.13.25) is responsible for the initial oxygenation of methane to metha [...]


ensembl_gene_id: azo2442
symbol: poxC
gene_biotype: protein_coding
description:
  Probable phenol hydrolase, subunit P2. Catabolizes phenol and some of its methylated derivatives. p2 is required for growth on phenol, and for in vitro phenol hydroxylase activity. Similar to SWISSPROT:P19731 (47% similarity,71% identity). Pfam (PF02406): MmoB/DmpM family; High confidence in function and specificity.


ensembl_gene_id: azo2443
symbol: poxB
gene_biotype: protein_coding
description:
  Probable Phenol hydroxylase, subunit P1,65% identity(69% similarity) to TrEMBL;Q7WYF3 LapL [lapL] [Pseudomonas sp. KL28]. Has PF02332;Methane/Phenol/Toluene Hydroxylase domain;IPR003430: Bacterial phenol hydroxylase (EC: 1.14.13.7) is a multicomponent enzyme that catabolises phenol and some of its methylated derivatives. This family contains both the P1 and P3 polypeptides of phenol hydroxlase and the alpha and beta chain of methane hydroxylase protein A. Methane hydroxylase protein A (EC: 1.14.13.25) is responsible for the initial oxygenation of methane to methanol in methanotrophs. I [...]


ensembl_gene_id: azo2444
symbol: poxA
gene_biotype: protein_coding
description:
  Putative phenol hydroxylase, subunit P0. Homology to poxA of R. eutropha of 34% (trembl:O84958) This family consists of several bacterial phenol hydroxylase subunit proteins which are part of a multicomponent phenol hydroxylase. Some bacteria can utilise phenol or some of its methylated derivatives as their sole source of carbon and energy. The first step in this process is the conversion of phenol into catechol. Catechol is then further metabolised via the meta-cleavage pathway into TCA cycle intermediates. Pfam: Phenol hydrolase subunit no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo2445
symbol: poxG
gene_biotype: protein_coding
description:
  Probable ferredoxin-like protein. Homology to poxG of R. eutropha of 56% (trembl|O84964) The ferredoxins are iron-sulphur proteins that transfer electrons in a wide variety of metabolic reactions. Pfam: 2Fe-2S iron-sulfur cluster binding domain no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo2446
symbol: poxR
gene_biotype: protein_coding
description:
  Probable positive regulator of phenol-degratives genes; Transcriptional regulatory protein probable involved into the phenol degradation pathway,; High confidence in function and specificity.


ensembl_gene_id: azo2447
symbol: pobR1
gene_biotype: protein_coding
description:
  pobR. Transcriptional regulator AraC family. InterPro: AraC type helix-turn-helix pdxH: pyridoxamine 5-phosphate oxidase; Function unclear.


ensembl_gene_id: azo2448
symbol: pobA
gene_biotype: protein_coding
description:
  4-hydroxybenzoate 3-monooxygenase; P-hydroxybenzoate hydroxylase InterPro: Aromatic-ring hydroxylase (flavoprotein monooxygenase); High confidence in function and specificity.


ensembl_gene_id: azo2451
symbol: azo2451
gene_biotype: protein_coding
description:
  The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases,TREMBL:Q98J95 (48% identity); TREMBL:Q8YZV3 (43% identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. PFAM (PF00106): Short chain dehydrogenase; Specificity unclear.


ensembl_gene_id: azo2452
symbol: azo2452
gene_biotype: protein_coding
description:
  Conserved hypothetical protein, 31% identity (51% similarity) to TrEMBL;Q6NAA7. Has PF02637, GatB/Yqey domain;IPR003789:This domain is found in GatB and proteins related to bacterial Yqey P54464. It is about 140 amino acid residues long. This domain is found at the C terminus of GatB O30509 which transamidates Glu-tRNA to Gln-tRNA. The function of this domain is uncertain. It does however suggest that Yqey and its relatives have a role in tRNA metabolism. No Signal peptide or TMH present; Function unclear.


ensembl_gene_id: azo2454
symbol: azo2454
gene_biotype: protein_coding
description:
  Hypothetical secreted protein no homology of the entire protein to the data bank no domains predicted signal peptide no TMHs.


ensembl_gene_id: azo2458
symbol: azo2458
gene_biotype: protein_coding
description:
  Putative transcriptional regulator, LuxR family,very low similarity to SWISSPROT: sprot|NARP_ECOLI (16% Escherichia coli, NarP) InterPro: IPR000792 HTH_LuxR. Pfam: PF00196 GerE. Signal P reporting signal peptide. HTH reporting nucleic acid binding motif; Function unclear.


ensembl_gene_id: azo2459
symbol: azo2459
gene_biotype: protein_coding
description:
  Hypothetical protein, has very weak homolgy with hits in the database. NO motifs,domains, signal peptide or TMH present.


ensembl_gene_id: azo2460
symbol: azo2460
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to mll6891 of Mesorhizobium loti of 37% (gi|14026496|dbj|BAB53093.1|). No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo2461
symbol: azo2461
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to mll6889 of M.loti. of 58% (trembl|Q987V8(SRS)). No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo2462
symbol: azo2462
gene_biotype: protein_coding
description:
  Hypothetical secreted protein. No homology of the entire protein to the data bank. No domains predicted. No TMHs. Signal peptide present.


ensembl_gene_id: azo2464
symbol: azo2464
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to mll6883 of M.loti of 58% (trembl|Q987W1(SRS)). No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo2465
symbol: azo2465
gene_biotype: protein_coding
description:
  Hypothetical protein. No homology to the data base. No domains predicted. No signal peptide. No TMHs.


ensembl_gene_id: azo2467
symbol: azo2467
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to mll6881 of M.loti of 49% (trembl|Q987W3(SRS)). No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo2468
symbol: azo2468
gene_biotype: protein_coding
description:
  Conserved hypothetical transcriptional regulator. Homology to pp3544 of P. putida of 56% (trembl|Q88H21). InterPro: Aminotransferases class-I (IPR004838); Bacterial regulatory proteins, GntR family (IPR000524). Pfam: Bacterial regulatory proteins, gntR family; Aminotransferase class I and II. no signal peptide. no TMHs; Family membership.


ensembl_gene_id: azo2469
symbol: azo2469
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to bb1298 of B. brochiseptica of 64% (trembl|Q7WMU2). Pfam: Glyoxalase/Bleomycin restiant protein. no signal peptide. no TMHs.


ensembl_gene_id: azo2470
symbol: lldD
gene_biotype: protein_coding
description:
  Conserved hypothetical L-lactate dehydrogenase (cytochrome). Homology to lldD of B. bronchisptica of 51% (tremble:Q7WND1). InterPro: FMN-dependent alpha-hydroxy acid dehydrogenases (IPR000262); Protein binding FMN and related compounds core region (IPR003009). Pfam: FMN-dependent dehydrognease. no signal peptide. no TMHs; Family membership.


ensembl_gene_id: azo2472
symbol: dctP4
gene_biotype: protein_coding
description:
  Putative C4-dicarboxylate-binding periplasmic protein; TRAP-dicarboxylate transporter. Binds c4-dicarboxylates; part of the binding-protein-dependent transport system for uptake of C4-dicarboxylates. 22% TRAP_transptDctP. Pfam:PF03480; SBP_bac_7; 1. TIGRFAMs:TIGR00787; dctP; 1. Signal peptide: present. TMHelix:1; High confidence in function and specificity.


ensembl_gene_id: azo2473
symbol: xylC
gene_biotype: protein_coding
description:
  Probable benzaldehyde dehydrogenase [NAD+] (EC 1.2.1.28). Homology to xylC of P. putida of 53% (sprot|XYLC_PSEPU). CATALYTIC ACTIVITY: Benzaldehyde + NAD(+) + H(2)O = benzoate + NADH. Interpro: Aldehyde dehydrogenase family (IPR002086) Pfam: Aldehyde dehydrogenase family no signal peptide no TMHs proA: gamma-glutamyl phosphate reductas; Family membership.


ensembl_gene_id: azo2474
symbol: alsS
gene_biotype: protein_coding
description:
  Acetolactate synthase large subunit (AHAS) (Acetohydroxy-acid synthase large subunit) (ALS). InterPro: Thiamine pyrophosphate dependent enzyme TIGRFAM: acolac_lg: acetolactate synthase large subunit; Family membership; Belongs to the TPP enzyme family.


ensembl_gene_id: azo2475
symbol: dntR
gene_biotype: protein_coding
description:
  Transcriptional regulator,; High confidence in function and specificity; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: azo2476
symbol: rdxA
gene_biotype: protein_coding
description:
  Putative iron-sulfur 4Fe-4S ferredoxin transmembrane protein. Homology to rdxA of R. sphaeroides of 37% (SWISSPROT:RDXA_RHOSH) Involved in a membrane generated redox signal. Pfam: 4Fe-4S binding domain Probable 5 TMHs no signal peptide; Family membership.


ensembl_gene_id: azo2477
symbol: azo2477
gene_biotype: protein_coding
description:
  Putative hypothetical protein. Has extremely weak homologs in the the database. No signaficant known doamins,motifs or signal peptide present.


ensembl_gene_id: azo2478
symbol: azo2478
gene_biotype: protein_coding
description:
  Permease,member of the Major Facilitator Superfamiliy (MFS)transporters. MFS are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. 34% MFS.IPR005829; Sug_transporter.IPR010916;TONB_Box_N. TMHelix:9; Function unclear.


ensembl_gene_id: azo2479
symbol: azo2479
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to VV12384 of Vibrio vulnificus of 60% (trembl|Q8DA26). No domains predicted. TMHMM2 reporting 1 TMH present. No signal peptide present; Conserved hypothetical protein.


ensembl_gene_id: azo2482
symbol: azo2482
gene_biotype: protein_coding
description:
  Putative hybrid sensor and regulator; Gene function unknown, no significant homology to proteins of known function. Typical domains for hybrid sensor and regulator are found. InterPro: IPR003594 ATPbind_ATPase. IPR004358 Bact_sens_pr_C. IPR005467 His_kinase. IPR003661 His_kinA_N. IPR001789 Response_reg. IPR008207 Hpt. IPR000014 PAS_domain. IPR001610 PAC. Pfam: PF00072 Response_reg. PF02518 HATPase_c. PF00512 HisKA. PF00989 PAS. PF00785 PAC. SMART: SM00387 HATPase_c. SM00388 HisKA. SM00448 REC. SM00091 PAS SM00086 PAC. TIGRFAM: TIGR00229 PAS domain S-box. Signal P reporting signal pepti [...]


ensembl_gene_id: azo2483
symbol: azo2483
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to Magn03007875 of Magnetospirillum magnetotacticum of 31% (gi|46202369|ref|ZP_00208493.1|(NBCI ENTREZ)). No domains predicted. Signal Peptide is reported to be Present, by Signal P program. No TMH reported present; Conserved hypothetical protein.


ensembl_gene_id: azo2485
symbol: azo2485
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to eca2717 of E. carotovora of 35% (tremble:Q6D3M7). no domains predicted. no signal peptide. no TMHs.


ensembl_gene_id: azo2486
symbol: ppsA2
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate synthase(Pyruvatewater dikinase)(PEP synthase). Essential step in gluconeogenesis when pyruvate and lactate are used as a carbon source.Catalytic activity:atp + pyruvate + h(2)o = amp + phosphoenolpyruvate + phosphate. 25% PEP_mobile.IPR006319; PEP_synth.IPR000121;PEP_utilizers.IPR002192; PPDK_N_term. Pfam:PF00391; PEP-utilizers; 1.PF02896; PEP-utilizers_C; 1. PF01326; PPDK_N; 1. TIGRFAMs:TIGR01418; PEP_synth; 1; High confidence in function and specificity.


ensembl_gene_id: azo2489
symbol: azo2489
gene_biotype: protein_coding
description:
  Putative transport protein; Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions(sodium symporters). Hypothetical E.coli protein yfbS. Similar to TrkA. The NAD+ -binding protein TrkA is a component of a low-affinity K+ uptake system in Escherichia coli. This protein has the TrkA-C and TrkA-N domains. dass: anion transporter; High confidence in function and specificity.


ensembl_gene_id: azo2490
symbol: txn
gene_biotype: protein_coding
description:
  Thioredoxin-disulfide reductase; Putative Thioredoxin. Homology to txn (THIO_ICTPU) of I. punctatus of 36%. Participates in various redox reactions through the reversible oxidation of the active center dithiol to a disulfide. InterPro: Thioredoxin (IPR0006662) Tigrfam: dsbE: periplasmic protein thiol:disulfie Oxidoreductase, DSB subfamily Pfam: Thioredoxin no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo2492
symbol: etfB3
gene_biotype: protein_coding
description:
  Electron transfer flavoprotein, beta subunit. Homology to etfB of B. japonicum of 71% (sprot|ETFB_BRAJA). The electron transfer flavoprotein serves as a specific electron acceptor for some dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase)(By similarity). InterPro: Electron transfer flavoprotein beta-subunit (IPR000049) Pfam: Electron transfer flavoprotein beta subunit no signal peptide no TMHS; High confidence in function and specificity.


ensembl_gene_id: azo2493
symbol: azo2493
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Entry name:- TREMBL:Q8XXS1 InterPro IPR002539; MaoC_dehydratas. Pfam PF01575; MaoC_dehydratas; 1. Identities = 74/154 (48%) Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0.


ensembl_gene_id: azo2494
symbol: aidB2
gene_biotype: protein_coding
description:
  Putative acyl-CoA dehydrogenase; The aidB gene encodes a protein of ca. 60 kDa that is homologous to several mammalian acyl coenzyme A dehydrogenases. Reaction:- acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor Entry name SWISSPROT:AIDB_ECOLI InterPro IPR006089; Acyl-CoA_dh. IPR006090; Acyl-CoA_dh_C. IPR006091; Acyl-CoA_dh_M. IPR006092; Acyl-CoA_dh_N. Pfam PF00441; Acyl-CoA_dh; 1. PF02770; Acyl-CoA_dh_M; 1. PF02771; Acyl-CoA_dh_N; 1. Identities = 85/289 (29%) Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0; Family membership.


ensembl_gene_id: azo2495
symbol: fcbC1
gene_biotype: protein_coding
description:
  Probable thiesterase; 4-hydroxybenzoyl-CoA thioesterase (EC 3.1.2.23). This family contains a wide variety of enzymes,principally thioesterases. This family includes 4HBT which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3 InterPro:IPR008272; 4HBcoA_thiost_AS. IPR006683; Thioestr_supf. Pfam:PF03061; 4HBT InterPro: 4-hydroxybenzoyl-CoA thioesterase family active site No signal peptide No transmembrane helices TIGR00051: conserved hypothetical protein; High confidence in function and specificity.


ensembl_gene_id: azo2497
symbol: paaJ2
gene_biotype: protein_coding
description:
  Thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA (By similarity). Entry name PAAJ_ECOLI Primary accession number P77525 Identity: 150/410 (36%) InterPro IPR002155; Thiolase. Pfam PF02803; Thiolase_C; 1. Number of predicted TMHs: 0 Prediction: Non-secretory protein Signal peptide probability: 0.000; Family membership; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: azo2498
symbol: paaG3
gene_biotype: protein_coding
description:
  Putative enoyl-CoA hydratase; Entry name SWISSPROT:PAAG_ECOLI InterPro :-IPR001753; EnCoA_hydrtse. Identities = 62/250 (24%) Pfam:-PF00378; ECH; 1. function:-Could possibly oxidizes fatty acids using specific components (by similarity). catalytic activity :-(3s)-3-hydroxyacyl-coa = trans-2(or 3)-enoyl-coa + h(2)o. Number of predicted TMHs: 0; Family membership; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: azo2499
symbol: fadD2
gene_biotype: protein_coding
description:
  Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (Long-chain acyl-CoA synthetase). Esterification concomitant with transport of exogenous long-chain fatty acids into metabolically active CoA thioesters for subsequent degradation or incorporation into phospholipids, TREMBL:Q89CF2 (46% identity); TREMBL:Q89CJ5 (44% identity). Pfam (PF00501): AMP-binding enzyme; Specificity unclear.


ensembl_gene_id: azo2500
symbol: livK2
gene_biotype: protein_coding
description:
  Putative leucine-specific binding protein; In enteric bacteria such as E. coli and Salmonella typhimurium, periplasmic binding proteins are found to participate in the transport of amino acids, sugars and ions. Leucine-specific binding protein are coded by livK and livJ. Similar sprot|LIVK_ECOLI (21%) and to trembl|Q9RYP6 (50%). Pfam (PF01094): Receptor family ligand binding region SignalP reporting Signal peptide; Specificity unclear.


ensembl_gene_id: azo2502
symbol: azo2502
gene_biotype: protein_coding
description:
  Probable branched-chain amino acid ABC transporter,ATP binding protein,; Specificity unclear; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: azo2506
symbol: cmd
gene_biotype: protein_coding
description:
  4-carboxymuconolactone decarboxylase; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.


ensembl_gene_id: azo2507
symbol: azo2507
gene_biotype: protein_coding
description:
  Hypothetical membrane protein. no homology of the entire protein to the data bank. no domains predicted. no signal peptide. 2 TMHS.


ensembl_gene_id: azo2508
symbol: azo2508
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to Daro03003856 of Dechloromonas aromatica of 41% (gi|46140330|ref|ZP_00203564.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. no TMHs.


ensembl_gene_id: azo2509
symbol: azo2509
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to cv0086 of C. violaceum of 76% (trembl|Q7P1X6). no signal peptide. no TMHs. No domains reported.


ensembl_gene_id: azo2510
symbol: azo2510
gene_biotype: protein_coding
description:
  Putative iron-sulfur protein; Bacterial ring hydroxylating dioxygenase,small subunit. Similar to AlcE: iron-sulfur-containing dioxygenases, probably involved in alcaligin biosynthesis pathway in Bordetella species. Putative iron-sulfure protein involved in aromatic compounds degradations. Rieske [2Fe-2S] domain present. Probable Choline monooxygenase chloroplast precursor (EC 1.14.15.7). nadp_idh_euk: isocitrate dehydrogenase; Function unclear.


ensembl_gene_id: azo2511
symbol: fpvA1
gene_biotype: protein_coding
description:
  Iron-regulated outer membrane protein. TonB-dependent receptor protein. Homolog to fpvA, a ferripyoverdine receptor precursor in P. aeruginosa. Similar to PupA protein of P. putida WCS,this protein is a receptor for the iron-bound form of pesudobactin, a compound structurally very; High confidence in function and specificity.


ensembl_gene_id: azo2512
symbol: azo2512
gene_biotype: protein_coding
description:
  Probable FecR-like transmembrane sensor involved in iron metabolism. FecR is involved in regulation of iron dicitrate transport. In the absence of citrate FecR inactivates FecI. FecR is probably a sensor that recognizes iron dicitrate in the periplasm; High confidence in function and specificity.


ensembl_gene_id: azo2513
symbol: azo2513
gene_biotype: protein_coding
description:
  Putative sigma factor, ECF subfamily; Probable fecI-like RNA polymerase sigma factor. THE SIGMA FACTOR IS AN INITIATION FACTOR THAT PROMOTES ATTACHMENT OF THE RNA POLYMERASE TO SPECIFIC INITIATION SITES AND THEN IS RELEASED. THIS SIGMA FACTOR REGULATES THE FEC GENES FOR IRON DICITRATE TRANSPORT (PROBABLE). InterPro: Sigma factor ECF subfamily; Specificity unclear.


ensembl_gene_id: azo2514
symbol: nagAb
gene_biotype: protein_coding
description:
  Putative ferredoxin; Naphthalene 12-dioxygenase system ferredoxin component. COMPONENT OF NAPHTHALENE DIOXYGENASE (NDO) MULTICOMPONENT ENZYME SYSTEM WHICH CATALYZES THE INCORPORATION OF BOTH ATOMS OF MOLECULAR OXYGEN INTO NAPHTHALENE TO FORM CIS- NAPHTHALENE DIHYDRODIOL. THIS SUBUNIT IS A 2FE-2S FERREDOXIN THAT TRANSFERS ELECTRONS TO IRON SULFUR PROTEIN COMPONENTS (ISP); High confidence in function and specificity.


ensembl_gene_id: azo2515
symbol: nagH
gene_biotype: protein_coding
description:
  Putative ring hydroxylating beta subunit; NagH: probable salicylate-5-hydroxylase small oxygenase component oxidoreductase protein. Involved in conversion of Naphthalene to gentisate. Aromatic compounds degradation; Family membership.


ensembl_gene_id: azo2516
symbol: nagG
gene_biotype: protein_coding
description:
  Putative ring hydroxylating large subunit; nagG,RSc1090:putative salicylate-5-hydroxylase large oxygenase component oxidoreductase protein [EC:1.-.-.-]. Rieske-type iron-sulfur center homologous to the large subunits of dihydroxylating dioxygenases. Involved in conversion of Naphthalene to gentisate. Aromatic compounds degradation. Biphenyl dioxygenase alpha subunit (EC 1.14.12.18) (Biphenyl 23- dioxygenase); High confidence in function and specificity.


ensembl_gene_id: azo2517
symbol: nagAa
gene_biotype: protein_coding
description:
  Naphthalene 12-dioxygenase system ferredoxin--NAD(+) reductase component COMPONENT OF NAPHTHALENE DIOXYGENASE (NDO) MULTICOMPONENT ENZYME SYSTEM WHICH CATALYZES THE INCORPORATION OF BOTH ATOMS OF MOLECULAR OXYGEN INTO NAPHTHALENE TO FORM CIS- NAPHTHALENE DIHYDRODIOL. TRANSFERS ELECTRONS FROM FERREDOXIN (NDOA) TO NADH; High confidence in function and specificity.


ensembl_gene_id: azo2518
symbol: nahR2
gene_biotype: protein_coding
description:
  LysR-type transcriptional regulator NahR Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes. Similar to SWISSPROT: sprot|NAHR_PSEPU (61% Pseudomonas putida, nahR) Pfam: PF00126 Bacterial regulatory helix-turn-helix protein,lysR family. HTH reporting nucleic acid binding motif; High confidence in function and specificity.


ensembl_gene_id: azo2519
symbol: dctM5
gene_biotype: protein_coding
description:
  TRAP-type C4-dicarboxylate transport system, large permease component,DctM. The dct locus encodes a high-affinity transport system for the C4-dicarboxylates malate,succinate, and fumarate. 25% DctM.IPR000252; DedA.IPR000524; HTH_GntR.IPR004681; TRAP_transptDctM. Pfam:PF06808; DctM; 1.PF00597; DedA; 1. TIGRFAMs:TIGR00786; dctM; 1. TMHelix: 11; Specificity unclear.


ensembl_gene_id: azo2520
symbol: azo2520
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to PM1526 of Pasteurella multocida of 32% (trembl|Q9CKT0(SRS)). Pfam: PF04290;IPR007387;Tripartite ATP-independent periplasmic transporters, DctQ component; The function of the members of this family is unknown, but DctQ homologues are invariably found in the tripartite ATP-independent periplasmic transporters. No signal peptide. 4 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo2522
symbol: ligB1
gene_biotype: protein_coding
description:
  Protocatechuate 4,5-dioxygenase beta chain subunit,having 63% similarity(48% identity)to TrEMBL;Q8PP10,Protocatechuate 3,4-dioxygenase beta chain [pcaH] [Xanthomonas axonopodis (pv. citri)] Swiss-Prot: P22636 PF02900;IPR004183; Catalytic LigB subunit of aromatic ring-opening dioxygenase.The LigAB enzyme (a protocatechuate 4,5-dioxygenase EC: 1.13.11.8), of Sphingomonas paucimobilis oxidizes protocatechuate (or 3,4-dihydroxybenzoic acid, PCA). The enzyme belongs to the class III extradiol-type catecholic dioxygenase family,which catalyzes the ring-opening reaction of protocatechuate and [...]


ensembl_gene_id: azo2523
symbol: ligA1
gene_biotype: protein_coding
description:
  Protocatechuate 4,5-dioxygenase alpha subunit, 39% Identity to TrEMBL;Q6N0R0,Q6NB24, Q9KWL5. Has PF07746Aromatic-ring-opening dioxygenase LigAB, LigA subunit; TMHMM2 reports 1 TMH.


ensembl_gene_id: azo2525
symbol: azo2525
gene_biotype: protein_coding
description:
  Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. Pfam: Endo/excinuclease amino terminal domain. no signal peptide. no TMHs. HTH predicted.


ensembl_gene_id: azo2527
symbol: azo2527
gene_biotype: protein_coding
description:
  Cytochrome P450s are involved in the oxidative degradation of various compounds. Particularly well known for their role in the degradation of environmental toxins and mutagens. Similar to SWISSPROT:P77902 (30% identity); TREMBL:Q59910 (32% identity); SWISSPROT:O34374 (28% identity). Pfam (PF00067): Cytochrome P450; Family membership.


ensembl_gene_id: azo2528
symbol: fdxP
gene_biotype: protein_coding
description:
  Probable ferredoxin. Homology to fdxP of C. crescentus of 51% (sprot|FER2_CAUCR). Ferredons are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. InterPro: Ferredoxin (IPR001041),Adrenodoxin (IPR001055) Pfam: 2Fe-2S iron-sulfur cluster binding domain no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo2529
symbol: camA
gene_biotype: protein_coding
description:
  Probable putidaredoxin reductase (EC 1.18.1.-). Homology to camA of P. putida of 48% (sprot|CAMA_PSEPU). The oxidation of camphor by cytochrome p450-cam requires the participation of a flavoprotein, putidaredoxin reductase, and an iron-sulfur protein, putidaredoxin, to mediate the transfer of electrons from nadh to p450 for oxygen activation. Interpro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IRP001327), NAD binding site (IPR000205) Pfam: Pyridine nucleotide-disulphide oxidoreductase no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo2530
symbol: azo2530
gene_biotype: protein_coding
description:
  Hypothetical protein yqgX. 65% identity, 75% similarity to conserved hypothetical protein (TREMBL:Q7P219) InterPro; TREMBL:Q7WQV2; Metallo-beta-lactamase superfamily. Pfam: Aminotransferase class III; helper component proteinase TREMBL:Q9DCMO-RIKEN cDNA; TREMBL:Q9A911 - GlyoxlaseII superfamily protein. TIGR00162: conserved hypothetical protein. Signal peptide-nonsecretory protein; Transmembrane helices present; Function unclear.


ensembl_gene_id: azo2533
symbol: fliC1
gene_biotype: protein_coding
description:
  Putative flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.


ensembl_gene_id: azo2534
symbol: mdcF2
gene_biotype: protein_coding
description:
  Putative malonate transporter. TREMBL:Q7ML40: 38% identity, 55% similarity SPROT:P56949: 27% identity, 44% similarity subcellular location:integral membrane protein (potential). similarity:belongs to the auxin efflux carrier (tc 2.a.69) family. InterPro:IPR004776; Auxin_eff. Pfam: PF03547; Auxin_eff; GntP_permease;GntP family permease (Pfam) 2a69: Auxin Efflux Carrier Signal P predicted signal peptide and TMHMM predicted 10 transmembrane helices; Specificity unclear.


ensembl_gene_id: azo2535
symbol: yakC
gene_biotype: protein_coding
description:
  Probable aldo-keto reductase. Homology to yakC of S.pombe of 43% (sprot|YAKC_SCHPO). Catalyze the reduction of 2-nitorbenzaldehyde, pyridine-2-aldehyde and 2-phthaladehyde. Pfam: Aldo/Keto reductase signal peptide no TMHs; Family membership.


ensembl_gene_id: azo2536
symbol: ligC
gene_biotype: protein_coding
description:
  Hypothetical oxidoreductase yrbE (EC 1.-.-.-). TREMBL:Q93PS4:90% identity; 93% similarity. This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyze the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and gala [...]


ensembl_gene_id: azo2537
symbol: ligB2
gene_biotype: protein_coding
description:
  Protocatechuate 4,5-dioxygenase beta chain subunit,having 91% similarity(85% identity)to TrEMBL;Q6N0Q9,Protocatechuate 3,4-dioxygenase beta chain [pcaH] [Xanthomonas axonopodis (pv. citri)]Swiss-Prot: P22636;PF02900;IPR004183; Catalytic LigB subunit of aromatic ring-opening dioxygenase.The LigAB enzyme (a protocatechuate 4,5-dioxygenase EC: 1.13.11.8), of Sphingomonas paucimobilis oxidizes protocatechuate (or 3,4-dihydroxybenzoic acid, PCA). The enzyme belongs to the class III extradiol-type catecholic dioxygenase family,which catalyzes the ring-opening reaction of protocatechuate and  [...]


ensembl_gene_id: azo2538
symbol: ligA2
gene_biotype: protein_coding
description:
  [EC:1.13.11.8], Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8) (4,5-PCD)., Aromatic-ring-opening dioxygenase LigAB, LigA subunit; High confidence in function and specificity.


ensembl_gene_id: azo2539
symbol: ligI
gene_biotype: protein_coding
description:
  Probable 2-pyrone-4,6-dicarboxylate hydrolase. Homology to ligI of S. paucimobilis of 55% (tremble:O87170) Pfam: Amidohydrolase no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo2540
symbol: mmsB
gene_biotype: protein_coding
description:
  Putative 3-hydroxyisobutyrate dehydrogenase; Activity:- 3-hydroxy-2-methylpropanoate + NAD = 2-methyl-3-oxopropanoate + NADH2 Entry name SWISSPROT:MMSB_PSEAE InterPro IPR002204; 3hydroxisobut_dh. IPR006115; 6PGD_NAD. Pfam PF03446; NAD_binding_2; 1. Identities = 48/218 (22%) Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0; Family membership.


ensembl_gene_id: azo2542
symbol: fldW
gene_biotype: protein_coding
description:
  4-oxalomesaconate hydratase These proteins are related to the metal-dependent hydrolase superfamily tremblnew|CAE30137: 86% identity, 93% similarity InterPro:IPR006992; Amidohydro_2. Pfam:PF04909; Amidohydro_2 Absence of traansmembrane helices (TMHMM predicted); High confidence in function and specificity.


ensembl_gene_id: azo2543
symbol: pcaK
gene_biotype: protein_coding
description:
  PcaK:4-hydroxybenzoate transporter. TRANSPORTER FOR 4-HYDROXYBENZOATE ALSO REQUIRED FOR CHEMOTAXIS TO AROMATIC ACIDS. Membership of the major facilitator superfamily of transport proteins. 2A0115: benzoate transport; High confidence in function and specificity.


ensembl_gene_id: azo2544
symbol: fldA
gene_biotype: protein_coding
description:
  Hypothetical protein FldA, 78% identity (86% similarity) to TrEMBL;Q6N0R5,Q8PF30(47% identity). 45% identity to ybhH of SwissProt;P75762(E.coli) Has PF04303,Protein of unknown function (DUF453);IPR007400; FldA (Q9L3A0) is thought to be involved in the degradation of the polyaromatic hydrocarbon fluorene by Sphingomonas sp. LB126. Has PF01678, Diaminopimelate epimerase;IPR001653 DAP_epimerase: Diaminopimelate epimerase contains two domains of the same alpha/beta fold, both contained in this family.Diaminopimelate epimerase (EC:5.1.1.7) catalyzes the isomeriazation of L,L- to D,L-meso-di [...]


ensembl_gene_id: azo2545
symbol: bcr1
gene_biotype: protein_coding
description:
  Bicyclomycin resistance protein homolog. Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance. Probable membrane translocase (By similarity). InterPro: General substrate transporters efflux_Bcr_CflA: drug resistance tran Also show similarity to bssH of bssDCABEFGH operon-genes involved in anaerobic degradation of toulene in denitryfing bacterium, Azoarcus strain EbN1; High confidence in function and specificity.


ensembl_gene_id: azo2546
symbol: nac
gene_biotype: protein_coding
description:
  Nitrogen assimilation regulatory protein nac (Nitrogen assimilation control protein). TRANSCRIPTIONAL ACTIVATOR FOR THE HUT PUT AND URE OPERONS AND REPRESSOR FOR THE GDH AND GLTB OPERONS IN RESPONSE TO NITROGEN LIMITATION. NEGATIVE REGULATOR OF ITS OWN EXPRESSION. Similar to SWISSPROT: sprot|NAC_KLEAE (30% Klebsiella aerogenes, nitrogen assimilation regulatory protein nac (nitrogen assimilation control protein)) Pfam: PF00126 Bacterial regulatory helix-turn-helix protein, lysR family. HTH reporting nucleic acid binding motif; Specificity unclear.


ensembl_gene_id: azo2548
symbol: dyp
gene_biotype: protein_coding
description:
  Putative iron-dependent peroxidase; Getrichum candidum Dec1,Dye-decolorizing peroxidase,DyP, that lacks a typical heme-binding region. Responsible for the decoloration of dyes. DyP degraded phenolic compounds, such as 2,6-dimethoxyphenol and guaiacol. Hypothetical protein yfeX. ccoO: cytochrome c oxidase cbb3-type su; High confidence in function and specificity.


ensembl_gene_id: azo2549
symbol: cca2
gene_biotype: protein_coding
description:
  tRNA nucleotidyltransferase (EC 2.7.7.25) (tRNA adenylyltransferase) (tRNA CCA-pyrophosphorylase) (CCA-adding enzyme). This enzyme carries out synthesis of the tRNA CCA terminus without the direction of a template using the multiple accepting and donating subsites within its active site; Family membership.


ensembl_gene_id: azo2550
symbol: mdcF3
gene_biotype: protein_coding
description:
  Putative malonate transporter. TREMBL:Q8ZCU0: 38% identity, 55% similarity SPROT:P56949:23% identity, 41% similarity InterPro:IPR004776; Auxin_eff. Pfam:PF03547; Auxin_ef Signal P predicted nonsecretory protein and TMHMM predicted 9 transmembrane helices. 2a69: Auxin Efflux Carrier; Specificity unclear.


ensembl_gene_id: azo2551
symbol: azo2551
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology with PA3897 of P. aeruginosa of 30%. InterPro: Integral membrane protein DUF6. Tigrfam: 2A78: Carboxylate/Amino Acid/Amine Transport. Pfam: Integral membrane protein DUF6. probable 10 TMHs. no signal peptide; Conserved hypothetical protein.


ensembl_gene_id: azo2552
symbol: pilU1
gene_biotype: protein_coding
description:
  Twitching motility protein; Tfp pilus retraction protein PilU, probable involved in the twitching motility mechanism,; High confidence in function and specificity.


ensembl_gene_id: azo2553
symbol: azo2553
gene_biotype: protein_coding
description:
  Hypothetical secreted protein. no homology to the data bank. no domains predicted. signal peptide. TMH in signal peptide.


ensembl_gene_id: azo2554
symbol: nodT
gene_biotype: protein_coding
description:
  Putative outer membrane efflux protein. Homology to nodT from Rhizobium leguminosarum of 20% over 432 aa. The OEP family (Outer membrane efflux protein)allow export of a variety of substrates in Gram negative bacteria. Most members of NodT family are likely to export primarily small molecules rather than proteins. InterPro: Outer membrane efflux protein. Pfam: Outer membrane efflux protein Signal peptide no TMHs; Family membership.


ensembl_gene_id: azo2555
symbol: azo2555
gene_biotype: protein_coding
description:
  HlyD family secretion protein; Specificity unclear; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: azo2556
symbol: azo2556
gene_biotype: protein_coding
description:
  Hypothetical protein; No Good Homology with any hits in the DB. Conserved Hypothetical Protein,34% similarity to TrEMBL;Q8E9W3. Has PF03160:IPR003644:Calx_beta;Na-Ca exchanger/integrin-beta4:This domain has been found in Na-Ca exchangers and integrin subunit beta4, as well as some cyanobacterial proteins. Has 3 CA(Cadherin repeats)domains;SMART:SM00112;IPR002126:Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Has 1 CADG,Dystrogly [...]


ensembl_gene_id: azo2559
symbol: azo2559
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to Mflag03001539 of Methylobacillus flagellatus of 38% (gi|45521149|ref|ZP_00172671.1|(NBCI ENTREZ)). no domains predicted. signal peptide. no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo2560
symbol: azo2560
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to rsc1124 of R. solanacearum of 59% (trembl|Q8Y0C0). no signal peptide. no TMHs. no domains reported.


ensembl_gene_id: azo2561
symbol: azo2561
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to dr0392 of D. radiodurans of 33% (trembl|Q9RXC3). Pfam: Collagen triple helix repeat (20 copies). Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. Smart: Bacterial OsmY and nodulation domain (BON). The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural  [...]


ensembl_gene_id: azo2562
symbol: ccp
gene_biotype: protein_coding
description:
  Cytochrome c peroxidase (EC 1.11.1.5), an electron-transfer proteins having one or several haem c groups,bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues. The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Signal peptide; High confidence in function and specificity.


ensembl_gene_id: azo2563
symbol: azo2563
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted secreted protein. Homology to bb1301 of B. bronchiseptica of 59% (trembl|Q7WMT9). Pfam: Lipoprotein_15. This family occurs as tandem repeats in a set of lipoproteins. The alignment contains a Y-X4-D motif. signal peptide. no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo2564
symbol: azo2564
gene_biotype: protein_coding
description:
  Putative RNA polymerase sigma factor,57% Identity to TrEMBL;Q7VV01, 49% Identity to TrEMBL;Q8XV48,53% to Q63LJ3. Has PF04542, Sigma-70 region 2; IPR007627,Sigma70_r2; Region 2 of sigma-70 is the most conserved region of the entire protein. All members of this class of sigma-factor contain region 2. The high conservation is due to region 2 containing both the -10 promoter recognition helix and the primary core RNA polymerase binding determinant. The core binding helix, interacts with the clamp domain of the largest polymerase subunit,beta prime. The aromatic residues of the recognition  [...]


ensembl_gene_id: azo2565
symbol: azo2565
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to BB1303 of Bordetella bronchiseptica of 50% (trembl|Q7WMT7). No domains predicted. TMHMM2 reporting 1 TMH present. No signal peptide present; Conserved hypothetical protein.


ensembl_gene_id: azo2566
symbol: azo2566
gene_biotype: protein_coding
description:
  Hypothetical protein,53% identity to TrEMBL:Q8YF53,Hypothetical protein BMEI1674 [BMEI1674] [Brucella melitensis] Has IPR000157:TIR domain; Family membership; ORF6.


ensembl_gene_id: azo2567
symbol: azo2567
gene_biotype: protein_coding
description:
  Putative LysR-family transcriptional regulator protein.62% identity to TrEMBL;Q63NK9,Q8XQV8,Q62B59,Q8VL17. PF00126, Bacterial regulatory helix-turn-helix protein, lysR family;IPR000847, HTH_LysR; Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse,but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family, the lysR family, groups together a range of proteins, including ampR, catM, catR, cynR, cysB, gltC, iciA, ilvY, irgB,lysR, metR, mkaC, mleR, nahR, nhaR, nodD, n [...]


ensembl_gene_id: azo2568
symbol: azo2568
gene_biotype: protein_coding
description:
  Membrane fusion protein; HlyD family secretion protein. The secretion of a number of proteins/molecules require the help of members belonging to the ABC transporter family and a membrane fusion protein belonging to the HlyD family,; Family membership.


ensembl_gene_id: azo2569
symbol: azo2569
gene_biotype: protein_coding
description:
  RND efflux transporter, permease protein; AcrB/AcrD/AcrF family protein. Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer, TREMBL:Q92U15 (38% identity); TREMBL:Q7NE92 (38% identity). InterPro (IPR000731): Sterol-sensing 5TM box. InterPro (IPR004764): Hydrophobe/amphiphile efflux-1 HAE1. InterPro (IPR001036): Acriflavin resistance protein. Pfam (PF00873): AcrB/AcrD/AcrF family. TIGRFAM (TIGR00915): Hydrophob [...]


ensembl_gene_id: azo2570
symbol: opcM2
gene_biotype: protein_coding
description:
  Probable outer membrane efflux protein. Homology to opcM from B. cepacia of 40% Component of an efflux system that confers mutiple antibiotic resistence. InterPro: Outer membrane efflux protein Pfam: Outer membrane efflux protein signal peptide no TMHS; Family membership.


ensembl_gene_id: azo2571
symbol: azo2571
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to VV1824 of V.vulnificus of 37% (trembl:Q7MKG9). No domains predicted. No signal peptide or TMH reported present.


ensembl_gene_id: azo2572
symbol: azo2572
gene_biotype: protein_coding
description:
  Hypothetical membrane protein. no homology to the data bank. no domains predicted. no signal peptide. 1 TMHs.


ensembl_gene_id: azo2573
symbol: fsr
gene_biotype: protein_coding
description:
  A gene conferring resistance to fosmidomycin (Fs) encode a putative polypeptide of 406 amino acids (aa) with a molecular weight of 43303 in E.coli. 23% similarity to B. japonicum fsr. A comparison between the aa sequence of Fsr and sequences in a protein database revealed 18% homology to the bacterial drug-export proteins that mediate resistance to tetracycline and chloramphenicol. Hydropathy analysis of the Fsr protein revealed twelve putative transmembrane segments. Fsr does not have any direct effect on the biosynthesis of isoprenoid in E. coli, and that the mechanism for FsR involv [...]


ensembl_gene_id: azo2576
symbol: dapB
gene_biotype: protein_coding
description:
  DapB protein; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.


ensembl_gene_id: azo2577
symbol: omlA
gene_biotype: protein_coding
description:
  Putative outer membrane lipoprotein OmlA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: azo2578
symbol: fur
gene_biotype: protein_coding
description:
  Ferric uptake regulation protein (Ferric uptake regulator)Fur. Acts as a global negative controlling element employing Fe(2+) as a cofactor to bind the operator of the repressed genes. Regulator for biosynthesis of the siderophore alcaligin E. InterPro: Ferric uptake regulator family TIGR00011: conserved hypothetical protein; High confidence in function and specificity.


ensembl_gene_id: azo2580
symbol: ppnK
gene_biotype: protein_coding
description:
  Probable inorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.


ensembl_gene_id: azo2581
symbol: hrcA
gene_biotype: protein_coding
description:
  Heat-inducible transcriptional repressor; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons.


ensembl_gene_id: azo2582
symbol: hemH
gene_biotype: protein_coding
description:
  Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.


ensembl_gene_id: azo2583
symbol: azo2583
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to rs02279 of R. solanacearum of 53% (trembl|Q8Y388(SRS)). No domains predicted. No signal peptide. 4 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo2587
symbol: mtaD
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Catalyzes the deamination of 5-methylthioadenosine and S- adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine. Belongs to the metallo-dependent hydrolases superfamily. MTA/SAH deaminase family.


ensembl_gene_id: azo2588
symbol: ompA1
gene_biotype: protein_coding
description:
  Outer membrane protein P.III precursor (Gonococcal protein III) (PIII). InterPro: Bacterial outer membrane protein; High confidence in function and specificity.


ensembl_gene_id: azo2589
symbol: ubiG
gene_biotype: protein_coding
description:
  3-demethylubiquinone-9 3-O-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.


ensembl_gene_id: azo2590
symbol: azo2590
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to ebA5327 of Azoarcus sp. EbN1 of 44% (gnl|keqq|eba:ebA5327(KEGG)). Pfam: Polysaccharide pyruvyl transferase Pyruvyl-transferases involved in peptidoglycan-associated polymer biosynthesis. no signal peptide. no TMHs.


ensembl_gene_id: azo2591
symbol: azo2591
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to Daro03002418 of Dechloromonas aromatica of 58% (gi|53730135|ref|ZP_00150721.2|(NBCI ENTREZ)). No domains predicted. No TMHs. signal peptide present.


ensembl_gene_id: azo2592
symbol: azo2592
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to Daro03002419 of Dechloromonas aromatica of 51% (gi|41723832|ref|ZP_00150722.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. no TMHs.


ensembl_gene_id: azo2593
symbol: azo2593
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to Daro03002420 of Dechloromonas aromatica of 39% (gi|41723833|ref|ZP_00150723.1|(NBCI ENTREZ)). no domains predicted. signal peptide. no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo2594
symbol: azo2594
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to CV2219 of Chromobacterium violaceum of 36% (trembl|Q7NVX2(SRS)). no domains predicted. no signal peptide. 1 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo2595
symbol: azo2595
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to Daro03002422 of Dechloromonas aromatica of 63% (gi|41723835|ref|ZP_00150725.1|(NBCI ENTREZ)). No domains predicted. No TMHs. signal peptide present; Conserved hypothetical protein.


ensembl_gene_id: azo2597
symbol: azo2597
gene_biotype: protein_coding
description:
  Hpyothetical protein with TIR domain. no homology to the data bank. Interpro: TIR domain Pfam: TIR doamin. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signaling,whereas box 3 is primarily involved in direc [...]


ensembl_gene_id: azo2598
symbol: azo2598
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to SMb20495 of S.meliloti of 45% (tremble:Q92W68). Has 3 TPR repeats(IPR001440)(SMART:SM00028):The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins. It mediates protein-protein interactions and the assembly of multiprotein complexes. The TPR motif consists of 3 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR [...]


ensembl_gene_id: azo2599
symbol: abp1
gene_biotype: protein_coding
description:
  Auxin-binding protein 1 precursor(ABP).This is probably a receptor for the plant hormone auxin. 34% Auxin_BP.IPR007113; Cupin_sup.IPR000886;ER_target_S. Pfam:PF02041; Auxin_BP; 1; Function unclear.


ensembl_gene_id: azo2600
symbol: azo2600
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family This protein activates the transcription of the lysA gene encoding diaminopimelate decarboxylase. LysR is also a negative regulator of its own expression. 37% 1 helixturnhelix PF03466 LysR_substrate; 1. HTH reporting nucleic acid binding motif; Specificity unclear.


ensembl_gene_id: azo2601
symbol: azo2601
gene_biotype: protein_coding
description:
  Ferredoxin subunits of nitrite reductase. THIS SUBUNIT IS A 2FE-2S FERREDOXIN THAT TRANSFERS ELECTRONS TO IRON SULFUR PROTEIN COMPONENTS (ISP). Similar to nasE,from S.aureus_N315 a naphthalene 12-dioxygenase system ferredoxin component; High confidence in function and specificity.


ensembl_gene_id: azo2602
symbol: infA1
gene_biotype: protein_coding
description:
  Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.


ensembl_gene_id: azo2604
symbol: azo2604
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to ORF62 of Pseudomonas of 60% (trembl|Q936Z8(SRS)). InterPro: Integral membrane protein DUF6. Tigrfam: 2A78: Carboxylate/Amino Acid/Amine Transporter. Pfam: Integral membrane protein DUF6. probable 9 TMHs. signal peptide; Conserved hypothetical protein.


ensembl_gene_id: azo2605
symbol: azo2605
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to cp98 of P. aeruginosa of 33% (tremblnew|AAP22587). no domains predicted. no signal peptide. 2 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo2606
symbol: azo2606
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to gsu0250 of G. sulfurreducens of 46% (tremblnew|AAR33584). no domains predicted. no signal peptide. 3 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo2607
symbol: panE2
gene_biotype: protein_coding
description:
  2-dehydropantoate 2-reductase; Ketopantoate reductase (KPA reductase) (KPR). Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid (By similarity). TIGRFAM: apbA_panE: 2-dehydropantoate 2-reductas; High confidence in function and specificity.


ensembl_gene_id: azo2608
symbol: azo2608
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; 42% Aldolase_II_N.Class II Aldolase and Adducin N-terminal domain. Pfam: PF00596; Aldolase_II; 1. TIGR: PP2871; High confidence in function and specificity.


ensembl_gene_id: azo2609
symbol: azo2609
gene_biotype: protein_coding
description:
  Conserved hypothetical endonuclease/exonuclease/phosphatase family protein. Homology to RPBDRAFT_0804 of Rhodopseudomonas palustris HaA2 of 315. Pfam: Exo_endo_phos. Endonuclease/Exonuclease/phosphatase family. This large family of proteins includes magnesium dependent endonucleases and a large number of phosphatases involved in intracellular signalling. This family includes: AP endonuclease proteins EC:4.2.99.18 e.g APEX1_HUMAN, DNase I proteins EC:3.1.21.1 e.g. DNAS1_HUMAN, Synaptojanin an inositol-1,4,5-trisphosphate phosphatase EC:3.1.3.56 SYNJ1_HUMAN, Sphingomyelinase EC:3.1.4.12  [...]


ensembl_gene_id: azo2611
symbol: azo2611
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to rs00511 of R. solanacearum of 32% (trembl|Q8XUW6(SRS)). No domains predicted. singal peptide. 2 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo2613
symbol: azo2613
gene_biotype: protein_coding
description:
  Hypothetical protein, 50% identity (59% simialrity)to TrEMBL;Q92TJ5. Has PF04828, Protein of unknown function (DUF636);IPR006913, GFA;This family of proteins has no known function, but several strongly conserved cysteine residues. Glutathione-dependent formaldehyde-activating enzymes catalyze the condensation of formaldehyde and glutathione to S-hydroxymethylglutathione. All known members of this family contain 5 strongly conserved cysteine residues. NO Signal peptide or TMH present; Function unclear.


ensembl_gene_id: azo2614
symbol: azo2614
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to Saro02001549 of Novosphingobium aromaticivorans of 37% (gi|48849438|ref|ZP_00303681.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. 4 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo2615
symbol: azo2615
gene_biotype: protein_coding
description:
  Hypothetical protein,45% similarity to TrEMBL;Q6LHM7. No Good homology over entire length in the DB. No signal Peptide or TMH present; Function unclear.


ensembl_gene_id: azo2616
symbol: azo2616
gene_biotype: protein_coding
description:
  Lactoylglutathione lyase; Puatative Glyoxalase sub unit, 37% identitcal to TrEMBL;Q89MF5 Has PF00903, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily;IPR004360, Gly_bleo_diox: Glyoxalase I, catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. This domain is found in other related proteins including the Bleomycin resistance protein and dioxygenases eg. 4-hydroxyphenylpyruv [...]


ensembl_gene_id: azo2617
symbol: azo2617
gene_biotype: protein_coding
description:
  TREMBL:Q89L44: 48% identity.64% similarity. probable haloacid dehalogenase-like hydrolase. InterPro:IPR005834; Hydrolase. Pfam:PF00702; Hydrolase; Phosphoglycolate phosphatase(PGP). TIGR00099: conserved hypothetical prot; Function unclear.


ensembl_gene_id: azo2619
symbol: azo2619
gene_biotype: protein_coding
description:
  Putative methyltransferase; Similar to TREMBL:Q98BY2 (39% identity); TREMBL:Q9A2R1 (40% identity); TREMBL:Q89KG6 (34% identity). Pfam (PF01209): ubiE/COQ5 methyltransferase family; Function unclear.


ensembl_gene_id: azo2620
symbol: azo2620
gene_biotype: protein_coding
description:
  Hypothetical membrane protein. no homology to the data bank. no domains predicted signal peptide. 3 TMHs.


ensembl_gene_id: azo2621
symbol: azo2621
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to VPA0111 of V.parahaemolyticus of 62% (trembl:Q87JY7). Has (IPR010323)PF06041, Bacterial protein of unknown function (DUF924);This family consists of several hypothetical bacterial proteins of unknown function. NO signal peptide or TMH present.


ensembl_gene_id: azo2624
symbol: azo2624
gene_biotype: protein_coding
description:
  Hypothetical truncated transposase. Homology to tnp23 of Azoarcus sp. EbN1 of 86% (gnl|keqq|eba:ebA2478(KEGG)). No domains predicted. No signal peptide. No TMHs.


ensembl_gene_id: azo2625
symbol: azo2625
gene_biotype: protein_coding
description:
  Hypothetical truncated transposase. Homology to tnp23 of Azoarcus sp. EbN1 of 87% (gnl|keqq|eba:ebA2478(KEGG)). No domains predicted. No signal peptide. No TMHs.


ensembl_gene_id: azo2626
symbol: azo2626
gene_biotype: protein_coding
description:
  Hypothetical truncated transposase. Homology to tnp23 of Azoarcus sp. EbN1 of 86% (gnl|keqq|eba:ebA2478(KEGG)). No domains predicted. No signal peptide. No TMHs.,; Family membership.


ensembl_gene_id: azo2627
symbol: azo2627
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to an orf of Polaromanas sp JS666 of 41% No domain predicted. No signal peptide No TMHs.


ensembl_gene_id: azo2628
symbol: azo2628
gene_biotype: protein_coding
description:
  Hypothetical membrane protein. Homology to yptb3870 of Y. pseudotuberculosis of 29% (tremble:Q664A2). No domains predicted. No signal peptide. 1 TMHs.


ensembl_gene_id: azo2629
symbol: azo2629
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to an orf of Exiguobacterium sp. 255-15 (ZP_00355791). No domains predicted. No signal peptide. 2 TMHs.


ensembl_gene_id: azo2630
symbol: azo2630
gene_biotype: protein_coding
description:
  Cobalamin biosynthesis protein, putative; CobN Magnesium Chelatase family protein, by similarity; Family membership.


ensembl_gene_id: azo2631
symbol: azo2631
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to NE0632 of Nitrosomonas europaea of 42% (trembl|Q82WN6(SRS)). no domains predicted. no signal peptide. 1 TMH; Conserved hypothetical protein.


ensembl_gene_id: azo2632
symbol: azo2632
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to PA1924 of P. aeruginosa of 43% (trembl|Q9I2I0(SRS)). No domains predicted. no signal peptide. probable 3TMHS; Conserved hypothetical protein.


ensembl_gene_id: azo2633
symbol: tam
gene_biotype: protein_coding
description:
  Probable trans-aconitate 2-methyltransferase; Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate.


ensembl_gene_id: azo2634
symbol: azo2634
gene_biotype: protein_coding
description:
  Hypothetical membrane protein. no homology to the data bank. no domains predicted. 1 TMHs. no signal peptide.


ensembl_gene_id: azo2636
symbol: azo2636
gene_biotype: protein_coding
description:
  Putative CbbY family protein; TREMBL:Q7MF75: 35% identity; 50% similarity. IPR006323; Phosphonoacetaldehyde hydrolase IPR010976; Beta-phosphoglucomutase hydrolase This group of sequences represent part of one structural subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (IPR005834). The superfamily is defined by the presence of three short catalytic motifs. Hypothetical protein yhcW. InterPro:IPR006402; HAD-SF-IA-v3. IPR005833; Halogease/hydrolase. Pfam: PF00702; Hydrolase Absence of signal peptide (Signal P predicted) and transmembrane helices [...]


ensembl_gene_id: azo2637
symbol: azo2637
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to RSc0334 of R. solanacearum of 59% (sprot:Y334_RALSO). Pfam: Appr-1-p processing enzyme. No signal peptide. No TMHs.


ensembl_gene_id: azo2638
symbol: azo2638
gene_biotype: protein_coding
description:
  Conserved hypothetical ATPase. Homology to rsc1961 of R. solanacearum of 37% (trembl|Q8XY02). Pfam: Atpase familly associated with various cellular activities (domaine 1 from 300 aa to 499 aa, domaine 2 from 543 to 723 aa). no signal peptide. no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo2641
symbol: azo2641
gene_biotype: protein_coding
description:
  Hypothetical protein. No homology to the data base. No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo2642
symbol: azo2642
gene_biotype: protein_coding
description:
  Hypothetical protein, very weak homology with any hits in the database. Has, No domains, repeats, motifs or features could be predicted with confidence above threshold scores.


ensembl_gene_id: azo2644
symbol: draG2
gene_biotype: protein_coding
description:
  Putative ADP-ribosyl-[dinitrogen reductase] hydrolase. Homology to draG of R. rubrum of 24% (sprot|DRAG_RHORU) Involved in the regulation of the nitrogen fixation activity by the reversible ADP-ribosylation of the dinitrogenase reductase component of the nitrogenase enzyme complex. Pfam: ADP-ribosylglycohydrolase no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo2646
symbol: azo2646
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to Bucepa03000629 of Burkholderia cepacia of 47% (gi|46324491|ref|ZP_00224852.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. no TMHs.


ensembl_gene_id: azo2647
symbol: dlhH
gene_biotype: protein_coding
description:
  Putative carboxymethylenebutenolidase; Similar to SWISSPROT:P71505 (50% identity),SWISSPROT:Q8X8L4 (49% identity). Pfam (PF01738): Dienelactone hydrolase family; High confidence in function and specificity.


ensembl_gene_id: azo2651
symbol: azo2651
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to ebD23 of Azoarcus sp. EbN1 of 44% (gnl|keqq|eba:ebD23(KEGG)). No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo2652
symbol: azo2652
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to CC0717 of Caulobacter crescentus of 66% (trembl|Q9AA89(SRS)). Also homology to noduline 21 of G. max of 33% (sprot|NO21_SOYBN(SRS)). Has PF01988,(IPR008217)Integral membrane protein DUF125;This family of predicted integral membrane proteins has no known function. However it does include P47818, that may have a role in regulating calcium levels. no signal peptide. 5 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo2653
symbol: pitA
gene_biotype: protein_coding
description:
  Probable low-affinity phosphate transporter protein, PitA. Involved in phosphate transport depending on the proton motive force in E.coli. Similar to Pho-4, a cation-phosphate symporter in N. crassa. InterPro: Phosphate transporter family Signal peptide; High confidence in function and specificity.


ensembl_gene_id: azo2654
symbol: azo2654
gene_biotype: protein_coding
description:
  Lactoylglutathione lyase; Glyoxalase family protein, 54% identity (67% similarity) to TrEMBL;Q88HB6. Has PF00903,Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily;IPR004360, Gly_bleo_diox: Glyoxalase I catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. This domain is found in other related proteins including the Bleomycin resistance protein and dioxygenases eg. 4-hydroxyp [...]


ensembl_gene_id: azo2655
symbol: azo2655
gene_biotype: protein_coding
description:
  Hypothetical membrane protein. No homology of the entire protein to a protein of similar length. no domains predicted. singal peptie. 6 TMHs.


ensembl_gene_id: azo2656
symbol: azo2656
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to S1719 of Photobacterium profundum of 73% (tremblnew|CAG22368). Has PF02694, Uncharacterized BCR,YnfA/UPF0060 family;IPR003844;This entry describes integral membrane proteins of unknown function. no signal peptide. 4 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo2657
symbol: fpr2
gene_biotype: protein_coding
description:
  Ferredoxin-NADP+ reductase (EC 1.18.1.2) Homology to fpr of A. vinelandii of 75% (sprot|FENR_AZOVI). CATALYTIC ACTIVITY: Reduced ferredoxin + NADP(+) = oxidized ferredoxin + NADPH. Interpro: Oxidoreductase FAD and NAD8P)-binding domain (IPR001433); NADH: cytochrome b5 reductase (CBR) (IPR001834) Pfam: Oxidoreductase FAD-binding doamin; Oxidoreductase NAD-binding domain no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo2658
symbol: trxA2
gene_biotype: protein_coding
description:
  Putative thioredoxin-disulfide reductase. Homology to trxA (ECs4714) of E. coli of 27%. Participates in various redox reactions through the reversible oxidation of the active center dithiol to a dislufide. InterPro: Thioredoxin (IPR006662) no TMHs; Family membership.


ensembl_gene_id: azo2659
symbol: azo2659
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to PJS6w01001981 of Polaromonas sp. JS666 of 70% (gi|54030965|ref|ZP_00363100.1|(NBCI ENTREZ)). No domains predicted. signal peptide. no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo2660
symbol: ybcL
gene_biotype: protein_coding
description:
  Hypothetical protein TC0109. TREMBL:Q8XTTO: 64% identity, 75% similarity. This entry describes a family of conserved hypothetical proteins with no known function. InterPro:IPR005247; Cons_hypoth481. IPR008914; PEBP. Pfam: PF01161; PBP Absence of signal peptide. Absence of TMH's; Function unclear.


ensembl_gene_id: azo2661
symbol: azo2661
gene_biotype: protein_coding
description:
  Hypothetical protein which carries at the C-terminus a DnaJ N-terminal domain. InterPro: DnaJ N-terminal domain (IPR001623) Pfam: DnaJ domain no signal peptide no TMHs.


ensembl_gene_id: azo2662
symbol: azo2662
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to ebA2897 of Azoarcus sp. EbN1 of 61% (gnl|keqq|eba:ebA2897(KEGG)). Has PF01936, Protein of unknown function DUF88;(IPR002790). This highly conserved bacterial protein has no known function. The alignment contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase (Bateman A pers. obs). Coils2 Program predcit presence of Coiled Coil. No Signal Peptide or TMH present.


ensembl_gene_id: azo2663
symbol: azo2663
gene_biotype: protein_coding
description:
  Conserved hypothetical peroxiredoxin; Conserve peroxiredoxin. Homology to mll2432 of M. loti of 74% (trembl|Q98IF0). Involved in redox regulation of the cell. Can reduce H(2)O(2) and short chain organic fatty acid and phospholipid hydroperoxides. May play a role in the regulation of phospholipid turnover as well as in protection against oxidative injury. Pfam: AhpC/TSA family no TMHs. No signal peptide; Family membership.


ensembl_gene_id: azo2664
symbol: azo2664
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to TdenA01001041 of Thiobacillus denitrificans of 39% (gi|52007163|ref|ZP_00334541.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. no TMHs.


ensembl_gene_id: azo2665
symbol: azo2665
gene_biotype: protein_coding
description:
  Hypothetical secreted protein. No homology of the entire protein to the data bank. no domains predicted signal peptide no TMHs; Belongs to the UPF0312 family.


ensembl_gene_id: azo2668
symbol: nerA
gene_biotype: protein_coding
description:
  Probable glycerol trinitrate reductase. Homology to nerA of A. radiobacter of 66% (trembl|O31246) InterPro: NADH:flavin oxidoreductase/NADH oxidase (IPR001155) Pfam: NADH:flavin oxidoreductase/NADH oxidase no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo2669
symbol: azo2669
gene_biotype: protein_coding
description:
  Conserved hypothetical cytochrome c family protein. Homology to bra0353 of B. suis of 50% (trembl|Q8FWU2). InterPro: Cytochrome c class I (IPR003088). Pfam: cytochrome c. signal peptide. no TMHS; Function unclear.


ensembl_gene_id: azo2670
symbol: azo2670
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to gsu0710 of G. sulfurreducens of 66% (tremblnew|AAR34040). no doamins predicted. signal peptide. no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo2672
symbol: azo2672
gene_biotype: protein_coding
description:
  Conserved hypothetical sensor histidine kinase,MODULATES THE ACTIVITY OF FIXJ A TRANSCRIPTIONAL ACTIVATOR OF NITROGEN FIXATION FIXK GENE. FIXL PROBABLY ACTS AS A KINASE THAT PHOSPHORYLATES FIXJ; Specificity unclear.


ensembl_gene_id: azo2673
symbol: azo2673
gene_biotype: protein_coding
description:
  Hypothetical protein,69% Identity (75% similarity) to TrEMBl;Q8XS84 Has PF06983, 3-demethylubiquinone-9 3-methyltransferase;IPR009725 3-dmu-93-mtfrase;This family represents a conserved region approximately 100 residues long within a number of bacterial and archaeal 3-demethylubiquinone-9 3-methyltransferases (EC:2.1.1.64). Note that some family members contain more than one copy of this region, and that many members are hypothetical proteins; Function unclear.


ensembl_gene_id: azo2674
symbol: azo2674
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to Bcep02002160 of Burkholderia fungorum of 35% (gi|48787369|ref|ZP_00283451.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. 6 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo2675
symbol: azo2675
gene_biotype: protein_coding
description:
  Aminotransferase; Lipopolysaccharide biosynthesis protein rffA. InterPro: DegT/DnrJ/EryC1/StrS family; Specificity unclear; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: azo2676
symbol: azo2676
gene_biotype: protein_coding
description:
  Putative methyltransferase; Similar to TREMBL:Q82SX7 (48% identity, 66% similarity, generic methyl transferase). Pfam (PF01209): ubiE/COQ5 methyltransferase family. TIGRFAM (TIGR00091): conserved hypothetical protein. TMHMM reporting one transmembrane helix; Function unclear.


ensembl_gene_id: azo2677
symbol: azo2677
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to NE2170 of Nitrosomonas europaea of 44% (trembl|Q82SX6(SRS)). Pfam: GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. no signal peptide. 4 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo2679
symbol: azo2679
gene_biotype: protein_coding
description:
  Conserved hypothetical protein, possibly an acyltransferase; InterPro: Bacterial transferase hexapeptide repeat; Function unclear.


ensembl_gene_id: azo2680
symbol: azo2680
gene_biotype: protein_coding
description:
  Glycosyltransferase; Bactoprenol glucosyl transferase (EC 2.4.1.-). Involved in O antigen modification. Catalyzes the transfer of the glucose residue from UDP-glucose to a lipid carrier (By similarity); Specificity unclear.


ensembl_gene_id: azo2682
symbol: azo2682
gene_biotype: protein_coding
description:
  Hypothetical protein predicted by Glimmer/Critica no homology to the data bank no domains predicted no signal peptide no TMHs.


ensembl_gene_id: azo2687
symbol: azo2687
gene_biotype: protein_coding
description:
  Hypothetical secreted protein. no homology to the data bank. no domains predicted. signal peptide present. TMH in signal peptide.


ensembl_gene_id: azo2688
symbol: creA
gene_biotype: protein_coding
description:
  Putative periplasmic protein [creA],59% identity (77% similarity) to SwissProt;P08367. TrEMBL; Q8XZD0(59% identity). Has PF05981, CreA protein;IPR010292, CreA: This family consists of several bacterial CreA proteins, the function of which is unknown; High confidence in function and specificity.


ensembl_gene_id: azo2689
symbol: azo2689
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to Daro03001159 of Dechloromonas aromatica of 50% (gi|41726181|ref|ZP_00152939.1|(NBCI ENTREZ)). Pfam: ProQ activator of osmoprotectant transpoter ProP. This family includes ProQ, which is required for full activation of the osmoprotectant transporter, ProQ, in Escherichia coli. no signal. peptide no TMHs.


ensembl_gene_id: azo2690
symbol: azo2690
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to ebA7139 of Azoarcus sp. EbN1 of 64% (gnl|keqq|eba:ebA7139(KEGG)). No domains predicted. No signal peptide. No TMH present.


ensembl_gene_id: azo2693
symbol: fliC2
gene_biotype: protein_coding
description:
  Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.


ensembl_gene_id: azo2694
symbol: azo2694
gene_biotype: protein_coding
description:
  Nucleotide sugar aminotransferase; InterPro: DegT/DnrJ/EryC1/StrS family; Specificity unclear; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: azo2695
symbol: azo2695
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to BF2580 of Bacteroides fragilis of 47% (gnl|keqq|bfr:BF2580(KEGG)). No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo2696
symbol: azo2696
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to Mmc102000919 of Magnetococcus sp. MC-1 of 48% (gi|48833619|ref|ZP_00290637.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo2697
symbol: azo2697
gene_biotype: protein_coding
description:
  Hypothetical protein. No homology of the entire protein with the data base. InterPro: Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose,dolichol phosphate and teichoic acids. No signal peptide. No TMHs.


ensembl_gene_id: azo2698
symbol: pepM
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate phosphomutase precursor(Phosphoenolpyruvate mutase) (PEP mutase) (PEP phosphomutase).FORMATION OF A CARBON-PHOSPHORUS BOND BY CONVERTING PHOSPHOENOLPYRUVATE (PEP) TO PHOSPHONOPYRUVATE (P-PYR). 34% Isocit_lyase_ph; High confidence in function and specificity.


ensembl_gene_id: azo2699
symbol: azo2699
gene_biotype: protein_coding
description:
  Phosphonopyruvate decarboxylase, putative; 3-phosphonopyruvate decarboxylase (EC 4.1.1.-). InterPro: Thiamine pyrophosphate dependent enzyme acolac_lg: acetolactate synthase large subunit,biosynthetic type; Family membership.


ensembl_gene_id: azo2700
symbol: azo2700
gene_biotype: protein_coding
description:
  Conserved hypothetical alcohol dehydrogenase. Homology to bp2820 of B. pertussis of 29% (TREMBL:Q7VV69). InterPro: Iron-containing alcohol dehydrogenase (IPR001670). Pfam: Iron-containing alcohol dehydrogenase. no signal peptide. no TMHs; Family membership.


ensembl_gene_id: azo2701
symbol: azo2701
gene_biotype: protein_coding
description:
  Hypothetical protein, similar to teichoic acid biosynthesis protein B; Putative CDP-glycerol:glycerophosphate glycerophosphotransferase tarF (EC 2.7.8.-). Catalyzes the addition of a second single glycerol-P residue to the prenolpyrophosphate-linked dissacharide to complete the linkage unit (Potential). PurN: phosphoribosylglycinamide formy; Family membership.


ensembl_gene_id: azo2703
symbol: azo2703
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to magn028431 of M. magnetotacticum of 33% (ZP 00053827). Domain structur: 76 aa - 144 aa TPR; 201 aa - 316 aa TPR; 408 aa - 761 aa COG3914. InterPro: TPR repeat (IPR001440). no signal peptide no TMH.


ensembl_gene_id: azo2705
symbol: flaG
gene_biotype: protein_coding
description:
  Probable flagellar protein; Protein flaG. Although these proteins are known to be important for flagellar their exact function is unknown TREMBL:Q82UA2: 56% identity, 79% similarity. InterPro:IPR005186; FlaG. Pfam:PF03646; FlaG L12: ribosomal protein L7/L12 Nonsecretory protein with low signal peptide probability (0.041): SignalP predicted Transmembrane helices 0; High confidence in function and specificity.


ensembl_gene_id: azo2706
symbol: fliD
gene_biotype: protein_coding
description:
  Flagellar hook-associated protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.


ensembl_gene_id: azo2707
symbol: fliS
gene_biotype: protein_coding
description:
  Flagellar protein fliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. Might be a chaperon for Flic. InterPro: Flagellar protein FliS fliS: flagellar protein FliS Pfam: Flagellar protein FliS no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo2708
symbol: fliT
gene_biotype: protein_coding
description:
  Hypothetical lagellar related protein FliT. Homology to fliT of R. solanacearum of 27% (trembl|Q8XST2). no domains predicted. no signal peptide. no TMHs.


ensembl_gene_id: azo2709
symbol: azo2709
gene_biotype: protein_coding
description:
  Hypothetical protein,42% similarity with TrEMBL;Q82T52. No Signal Peptide or TMH reported present; Family membership.


ensembl_gene_id: azo2710
symbol: azo2710
gene_biotype: protein_coding
description:
  Conserved hypothetical flagellar related protein. Homology to NE2078 of Nitrosomonas europaea of 48% (CAD85989). Tirgfam: flhB_rel(TIGR). This group describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set. No TMHs. No signal peptide; Conserved hypothetical protein.


ensembl_gene_id: azo2711
symbol: ycgR
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)-dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility.


ensembl_gene_id: azo2713
symbol: fliE
gene_biotype: protein_coding
description:
  Flagellar hook-basal body complex protein FliE; Region start changed from 2997519 to 2997495 (-24 bases).


ensembl_gene_id: azo2716
symbol: fliF
gene_biotype: protein_coding
description:
  Flagellar M-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.


ensembl_gene_id: azo2717
symbol: fliG
gene_biotype: protein_coding
description:
  Flagellar motor switch protein fliG. FLIG IS ONE OF THREE PROTEINS (FLIG FLIN FLIM) THAT FORM A SWITCH COMPLEX THAT IS PROPOSED TO BE LOCATED AT THE BASE OF THE BASAL BODY. THIS COMPLEX INTERACTS WITH THE CHEY AND CHEZ CHEMOTAXIS PROTEINS IN ADDITION TO CONTACTING COMPONENTS OF THE MOTOR THAT DETERMINE THE DIRECTION OF FLAGELLAR ROTATION (BY SIMILARITY). fliG: flagellar motor switch protein Pfam: fliG C-terminal domain no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo2718
symbol: fliH
gene_biotype: protein_coding
description:
  Probable Flagellar assembly protein FliH, 38% identity to TrEMBL;Q7VYE7, Q7WJB3, Q8XSS5. Has PF02108,Flagellar assembly protein FliH;IPR000563, Flag_FliH; Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants sh [...]


ensembl_gene_id: azo2719
symbol: fliI
gene_biotype: protein_coding
description:
  ATP synthase (EC 3.6.3.14). Probable catalytic subunit of a protein translocase for flagellum-specific export or a proton translocase involved in local circuits at the flagellum. May be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. InterPro: ATP synthase alpha and beta subunit central region Pfam: ATP synthase alpha/beta family no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo2720
symbol: fliJ
gene_biotype: protein_coding
description:
  Flagellar fliJ protein. FLAGELLAR PROTEIN THAT AFFECTS CHEMOTACTIC EVENTS. Might have a chaperon-like activity InterPro: Flagellar FliJ protein no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo2721
symbol: fliK
gene_biotype: protein_coding
description:
  Flagellar hook-length control protein. Controls the length of the flagellar hook. no TMHs no signal peptide; Family membership.


ensembl_gene_id: azo2722
symbol: fliL
gene_biotype: protein_coding
description:
  Putative flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.


ensembl_gene_id: azo2723
symbol: fliM
gene_biotype: protein_coding
description:
  Flagellar motor switch protein fliM. FLIM IS ONE OF THREE PROTEINS (FLIG FLIN FLIM) THAT FORM A SWITCH COMPLEX THAT IS PROPOSED TO BE LOCATED AT THE BASE OF THE BASAL BODY. THIS COMPLEX INTERACTS WITH THE CHEY AND CHEZ CHEMOTAXIS PROTEINS IN ADDITION TO CONTACTING COMPONENTS OF THE MOTOR THAT DETERMINE THE DIRECTION OF FLAGELLAR ROTATION. InterPro: Flagellar motor switch protein FliM Pfam:Flagellar motor switch protein FliM no TMHs signale peptide: no analysis; High confidence in function and specificity.


ensembl_gene_id: azo2724
symbol: fliN
gene_biotype: protein_coding
description:
  Flagellar motor switch protein fliN (Flagellar motor switch protein mopA) (Fragment). FliN is one of three proteins (FliG FliN FliM) that form a switch complex that is proposed to be located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins in addition to contacting components of the motor that determine the dirction of flagellar rotation (by similarity). InterPro: Surface presentation of antigens (SPOA) protein, Flagellar motor switch FliN protein Pfam: Surface presentation of antigens (SPOA) protein no signal peptide no TMHs; High confid [...]


ensembl_gene_id: azo2725
symbol: fliO
gene_biotype: protein_coding
description:
  Flagellar biosynthesis protein,FliO, 26% identity to TrEMBL;Q8XBA2, Q83ML3. SProt;P22586 Has Signal peptide. Has PF04347, Flagellar biosynthesis protein,FliO;IPR007442; FliO is an essential component of the flagellum-specific protein export apparatus. It is an integral membrane protein. Its precise molecular function is unknown.


ensembl_gene_id: azo2726
symbol: fliP
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.


ensembl_gene_id: azo2727
symbol: fliQ
gene_biotype: protein_coding
description:
  Flagellar biosynthesis protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.


ensembl_gene_id: azo2728
symbol: fliR
gene_biotype: protein_coding
description:
  Flagellar biosynthesis protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.


ensembl_gene_id: azo2730
symbol: flgL
gene_biotype: protein_coding
description:
  Flagellar hook-associated protein 3 (HAP3) (Hook-filament junction protein). no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo2731
symbol: flgK
gene_biotype: protein_coding
description:
  Flagellar hook-filament junction protein 1 (HAP1). no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo2732
symbol: flgJ
gene_biotype: protein_coding
description:
  Peptidoglycan hydrolase flgJ (EC 3.2.1.-) (Muramidase flgJ). Flagellum-specific muramidase which hydrolyses the peptidoglycan layer to assemble the rod structure in the periplasmic space (by similarity). InterPro: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidases Pfam: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidases no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo2733
symbol: flgI
gene_biotype: protein_coding
description:
  Flagellar P-ring protein precursor; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.


ensembl_gene_id: azo2734
symbol: flgH
gene_biotype: protein_coding
description:
  Flagellar L-ring protein precursor; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.


ensembl_gene_id: azo2735
symbol: flgG
gene_biotype: protein_coding
description:
  Flagellar basal-body rod protein flgG (Distal rod protein). The rod has been shown to consist of four different, yet evolutionary related proteins: in the distal portion of the rod there are about 26 subunits of protein flgG and in the proximal portion there are about six subunits each of proteins flgB, flgC, and flgF. These four proteins contain a highly conserved asparagine-rich domain at their N terminus. InterPro: Flagella basal body rod protein no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo2736
symbol: flgF
gene_biotype: protein_coding
description:
  Flagellar basal-body rod protein flgF (Putative proximal rod protein). The rod has been shown to consist of four different, yet evolutionary related proteins: in the distal portion of the rod there are about 26 subunits of protein flgG and in the proximal portion there are about six subunits each of proteins flgB, flgC, and flgF. These four proteins contain a highly conserved asparagine-rich domain at their N terminus. InterPro: Flagella basal body rod protein no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo2737
symbol: flgE
gene_biotype: protein_coding
description:
  Flagellar hook protein flgE. InterPro: Flagella basal body rod protein no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo2738
symbol: flgD
gene_biotype: protein_coding
description:
  Probable basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.


ensembl_gene_id: azo2739
symbol: flgC
gene_biotype: protein_coding
description:
  Flagellar basal-body rod protein flgC. The rod has been shown to consist of four different, yet evolutionary related proteins: in the distal portion of the rod there are about 26 subunits of protein flgG and in the proximal portion there are about six subunits each of proteins flgB, flgC, and flgF. These four proteins contain a highly conserved asparagine-rich domain at their N terminus. InterPro: Flagella basal body rod protein no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo2740
symbol: flgB
gene_biotype: protein_coding
description:
  Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.


ensembl_gene_id: azo2741
symbol: flgA
gene_biotype: protein_coding
description:
  Flagella basal body P-ring formation protein flgA precursor. Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a chaperon protein for the P-ring assembly (by similarity). signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo2742
symbol: azo2742
gene_biotype: protein_coding
description:
  Putative negative regulator of flagellin synthesis FlgM; Region start changed from 3024385 to 3024358 (27 bases).


ensembl_gene_id: azo2743
symbol: flgN
gene_biotype: protein_coding
description:
  Putative chaperon of flagella synthesis. FlgN is an export chaperon of FlgM and FlgK involved in flagellar synthesis. no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo2744
symbol: azo2744
gene_biotype: protein_coding
description:
  Hypothetical secreted protein. Homology to cv0285 of C. violaceum of 25% (trembl|Q7P1C8) no domains predicted signal peptide TMH in signal peptide.


ensembl_gene_id: azo2745
symbol: ompR2
gene_biotype: protein_coding
description:
  Probable DNA-binding response regulator, ITS CARBOXYL-TERMINAL MOIETY MEDIATES THE MULTIMERIZATION OF THE OMPR PROTEIN. AS A MULTIMER IT TURNS ON THE EXPRESSION OF THE OMPC GENE; AS A MONOMER IT TURNS ON THE EXPRESSION OF THE OMPF GENE; High confidence in function and specificity.


ensembl_gene_id: azo2747
symbol: azo2747
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to ebA6852 of Azoarcus sp. EbN1 of 47% (gnl|keqq|eba:ebA6852(KEGG)). No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo2748
symbol: azo2748
gene_biotype: protein_coding
description:
  Putative sensory box histidine kinase, very low similarity to TREMBL: trembl|Q9FD00 (12% Erwinia stewartii, HrpX) InterPro: IPR005467 His_kinase. IPR003661 His_kinA_N. IPR000014 PAS_domain. IPR001610 PAC Pfam: PF02518 HATPase_c. PF00989 PAS. PF00785 PAC. TIGRFAM:TIGR00229 PAS domain S-box; Function unclear.


ensembl_gene_id: azo2750
symbol: glpA
gene_biotype: protein_coding
description:
  Putative glycerol-3-phosphate dehydrogenase. Homology to glpA of B. hermsir of 38% (trembl|Q84I21) FAD-dependent glycerol-3-phosphate dehydrogenase catalyzes the conversion of glycerol-3-phosphate into dihydroxyacetone phosphate: sn-glycerol-3-phosphate + acceptor = glycerone phosphate + reduced acceptor. InterPro: D-amino acid oxidase (IPR000927) Pfam: FAD dependent oxidoreductase no signal peptide no TMHs gidA: glucose-inhibited division prot; Family membership.


ensembl_gene_id: azo2751
symbol: glpK
gene_biotype: protein_coding
description:
  Probable glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.


ensembl_gene_id: azo2752
symbol: azo2752
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology with CV1535 of C. violaceum of 46%. 2A78: Carboxylate/Amino Acid/Amine Tranporter. Pfam: Intergral membrane protein DUF6. probable 9 TMHs. signal peptide; Conserved hypothetical protein.


ensembl_gene_id: azo2753
symbol: azo2753
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to NE1501 of N.europaea of 47% (trembl:Q82UI4). No domains predicted. Signal peptide present. No TMH reported present.


ensembl_gene_id: azo2754
symbol: sseA
gene_biotype: protein_coding
description:
  SseA: putative thiosulfate sulfurtransferase (rhodanese-like protein) [EC:2.8.1.1]. This protein transfers a sulfur ion to cyanide or to other thiol compounds. Also has weak rhodanese activity (130-fold lower). Its participation in detoxification of cyanide may be small. May be involved in the enhancement of serine sensitivity. Probable 3-mercaptopyruvate sulfurtransferase (EC 2.8.1.2) (Rhodanese- like protein) (MST). InterPro: Rhodanese/cdc25 fold; High confidence in function and specificity.


ensembl_gene_id: azo2756
symbol: tyrS
gene_biotype: protein_coding
description:
  TyrS protein; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily.


ensembl_gene_id: azo2759
symbol: rpsI
gene_biotype: protein_coding
description:
  30S ribosomal protein S9; High confidence in function and specificity; Belongs to the universal ribosomal protein uS9 family.


ensembl_gene_id: azo2760
symbol: rplM
gene_biotype: protein_coding
description:
  50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.


ensembl_gene_id: azo2761
symbol: azo2761
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to rsc0489 of R. solanacearum of 73% (trembl|Q8Y247). no signal peptide. no TMH. No domains predicted; Family membership.


ensembl_gene_id: azo2762
symbol: coq7
gene_biotype: protein_coding
description:
  Ubiquinone biosynthesis protein; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.


ensembl_gene_id: azo2763
symbol: azo2763
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to ebA945 of Azoarcus sp. EbN1 of 47% (gnl|keqq|eba:ebA945(KEGG)). No domains predicted. Signal P reporting signal peptide present. No TMH present; Conserved hypothetical protein.


ensembl_gene_id: azo2764
symbol: rppH
gene_biotype: protein_coding
description:
  Probable (di)nucleoside polyphosphate hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily.


ensembl_gene_id: azo2765
symbol: proS
gene_biotype: protein_coding
description:
  Proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacy [...]


ensembl_gene_id: azo2766
symbol: azo2766
gene_biotype: protein_coding
description:
  Probable Membrane-bound lytic murein transglycosylase C precursor (EC 3.2.1.-) (Murein hydrolase C); Function unclear.


ensembl_gene_id: azo2767
symbol: azo2767
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to Daro03000304 of Dechloromonas aromatica of 54% (gi|46140561|ref|ZP_00152132.2|(NBCI ENTREZ)). Has PF04519; Protein of unknown function, DUF583:This family contains several uncharacterised hypothetical proteins. No Signal peptide or TMH reported as present.


ensembl_gene_id: azo2769
symbol: azo2769
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to ebA964 of Azoarcus sp. EbN1 of 33% (gnl|keqq|eba:ebA964(KEGG)). No domains predicted. Signal P reporting signal peptide present. No TMH reported present; Conserved hypothetical protein.


ensembl_gene_id: azo2772
symbol: mnmA
gene_biotype: protein_coding
description:
  tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.


ensembl_gene_id: azo2773
symbol: azo2773
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to ebA988 of Azoarcus sp. EbN1 of 43% (gnl|keqq|eba:ebA988(KEGG)). no domains predicted. signal peptie. no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo2774
symbol: nudJ
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Putative Nudix hydrolase ymfB (EC 3.6.-.-). mutt: mutator mutT protein; Specificity unclear; Belongs to the Nudix hydrolase family. NudJ subfamily.


ensembl_gene_id: azo2776
symbol: azo2776
gene_biotype: protein_coding
description:
  Hypothetical protein, 47% identity to TrEMBL;Q7NW97,TrEMBL;Q7VTV4(56% identity). No domains,repeats, motifs or features present; Function unclear.


ensembl_gene_id: azo2777
symbol: azo2777
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to ne1289 of N. europaea of 49% (trembl|Q82V21). InterPro: Esterase/lipase/thioesterase family active site (IPR000379). no signal peptide. no TMH.


ensembl_gene_id: azo2778
symbol: pgm
gene_biotype: protein_coding
description:
  Phosphomannomutase/phosphoglucomutase (PMM / PGM). The phosphomannomutase activity produces a precursor for alginate polymerization. This enzyme participates in both the breakdown and synthesis of glucose.Catalytic activity: Alpha-D-glucose 1-phosphate = alpha-D-glucose 6-phosphate. 58% PG/PMM_mutase.IPR005844; PG_PMM_ABAI.IPR005845; PG_PMM_ABAII.IPR005846; PG_PMM_ABAIII.IPR005843; PG_PMM_C. Pfam:PF02878; PGM_PMM_I; 1.PF02879; PGM_PMM_II; 1.PF02880; PGM_PMM_III. PF00408; PGM_PMM_IV; 1; High confidence in function and specificity.


ensembl_gene_id: azo2779
symbol: azo2779
gene_biotype: protein_coding
description:
  Conserved hypothetical protein with unknown function. No domains predicted. Similarity to TREMBL: trembl|Q9I6D7 (33% Pseudomonas aeruginosa, hypothetical protein pa0356) / trembl|Q88CQ4 (30% Pseudomonas putida (strain KT2440), pp5126).


ensembl_gene_id: azo2780
symbol: alaS
gene_biotype: protein_coding
description:
  AlaS protein; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.


ensembl_gene_id: azo2781
symbol: azo2781
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to ebA1022 of Azoarcus sp. EbN1 of 86% (gnl|keqq|eba:ebA1022(KEGG)). Has PF01923, Cobalamin adenosyltransferase;IPR002779,DUF80; This family contains the gene products of PduO and EutT which are both cobalamin adenosyltransferases. PduO is a protein with ATP:cob(I)alamin adenosyltransferase activity. The main role of this protein is the conversion of inactive cobalamins to AdoCbl for 1,2-propanediol degradation. The EutT enzyme appears to be an adenosyl transferase, converting CNB12 to AdoB12. No signal peptide or TMH present.


ensembl_gene_id: azo2782
symbol: azo2782
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to am orf of Azotobacter vinelandii of 51% (gi|67087339|gb|EAM06806.1). Pfam: Dinitrogenase iron-molybdenum cofactor. This family contains several NIF (B,Y and X) proteins which are iron-molybdenum cofactors (FeMo-co) in the dinitrogenase enzyme which catalyses the reduction of dinitrogen to ammonium. No signal peptide. No TMHs.


ensembl_gene_id: azo2783
symbol: azo2783
gene_biotype: protein_coding
description:
  DNA repair system specific for alkylated DNA; Probable RNA-directed RNA polymerase (EC 2.7.7.48) (RNA replicase) (216.5 kDa protein) (ORF1). alkb: alkylated DNA repair protein AlkB; Function unclear.


ensembl_gene_id: azo2784
symbol: azo2784
gene_biotype: protein_coding
description:
  Conserved hypothetical monoamine oxidase. Homology to rsp0431 of R. solanacearum of 34% (trembl|Q8XSN6). In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. InterPro: Amine oxidase (IPR002937). Pfam: Flavin containing amine oxidase. probable signal peptide. no TMH; Family membership.


ensembl_gene_id: azo2785
symbol: azo2785
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to SC3D11.05C of Streptomyces coelicolor of 33% (trembl|Q9L1F7(SRS)). Pfam (PF00005): ABC transporter. Pfam (PF00664): ABC transporter transmembrane region. TMHMM reporting three transmembrane helices. No signal peptide; Conserved hypothetical protein.


ensembl_gene_id: azo2786
symbol: dinP
gene_biotype: protein_coding
description:
  DNA-directed DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.


ensembl_gene_id: azo2787
symbol: rumC
gene_biotype: protein_coding
description:
  Conserved hypothetical RumC homolog. Homology to rumC of P.aeruginosa of 43% (gi|20139744|sp|Q9I4U3|RMUC_PSEAE). Pfam: RmuC family. This family contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures. Signal peptide predicted. 2 TMHs.,; Conserved hypothetical protein.


ensembl_gene_id: azo2788
symbol: aroG
gene_biotype: protein_coding
description:
  Phospho-2-dehydro-3-deoxyheptonate aldolase; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP).


ensembl_gene_id: azo2789
symbol: kefC
gene_biotype: protein_coding
description:
  Putative cation/proton antiporter; Glutathione-regulated potassium-efflux system protein kefC (K(+)/H(+) antiporter). Transport system that facilitates potassium-efflux possibly by potassium-proton antiport.Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. KefC subfamily. 23% K_eff.IPR006153; Na_H_porter. Pfam:PF00999; Na_H_Exchanger; 1. TIGRFAMs:TIGR00932; 2a37; 1. TMHelix:11; High confidence in function and specificity.


ensembl_gene_id: azo2790
symbol: msrP
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R [...]


ensembl_gene_id: azo2791
symbol: msrQ
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subu [...]


ensembl_gene_id: azo2792
symbol: mogA
gene_biotype: protein_coding
description:
  Molybdopterin biosynthesis mog protein. Involved in the biosynthesis of a demolybdo-cofactor (molybdopterin) necessary for molybdo-enzymes (By similarity). InterPro: Molybdenum cofactor biosynthesis protein TIGRFAM: molyb_syn: molybdenum cofactor synthesis; High confidence in function and specificity.


ensembl_gene_id: azo2793
symbol: yjgA
gene_biotype: protein_coding
description:
  Hypothetical protein yjgA, 46% identity(59% similarity) to SwissProt;Q8FAF3.SwissProt;Q83P53 Has PF04751, Protein of unknown function (DUF615);IPR006839;This family of bacterial proteins has no known function. NO Signal Peptide or TMH reported present; Function unclear; Belongs to the UPF0307 family.


ensembl_gene_id: azo2794
symbol: pmbA
gene_biotype: protein_coding
description:
  Probable PmbA protein. Homology to pmbA of E. coli of 48% (sprot|PMBA_ECOLI). MAY FACILITATE THE SECRETION OF THE PEPTIDE ANTIBIOTIC MICROCIN B17 (MCCB17) BY COMPLETING ITS MATURATION. SUPPRESSES THE INHIBITORY ACTIVITY OF THE CARBON STORAGE REGULATOR (CSRA). Pfam: Putative modulator of DNA gyrase no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo2795
symbol: azo2795
gene_biotype: protein_coding
description:
  Putative periplasmic substrate binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.


ensembl_gene_id: azo2796
symbol: azo2796
gene_biotype: protein_coding
description:
  Putative large permease component of TRAP-type transporter; Similar to TREMBL:Q7WQP2 (61% identity); TREMBL:Q7W1R6 (61% identity); TREMBL:Q8G2H8 (50% identity). TIGRFAM (TIGR00786): TRAP transporter, DctM subunit. TMHMM predicting 14 transmembrane helices; Specificity unclear.


ensembl_gene_id: azo2797
symbol: azo2797
gene_biotype: protein_coding
description:
  Putative small permease component of TRAP-type transporter; Similar to TREMBL:Q7WQP3 52% identity); TREMBL:Q92P73 (54% identity); TREMBL:Q8UK53 (48% identity). TMHMM reporting four transmembrane helices; Specificity unclear.


ensembl_gene_id: azo2798
symbol: gpmB
gene_biotype: protein_coding
description:
  Probable phosphoglycerate mutase GpmB (phosphoglyceromutase) 0(Pgam). Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate 31% PG/BPGM_mutase. Pfam:PF00300; PGAM; 1; High confidence in function and specificity.


ensembl_gene_id: azo2801
symbol: glyA
gene_biotype: protein_coding
description:
  Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.


ensembl_gene_id: azo2802
symbol: ribX
gene_biotype: protein_coding
description:
  Transcriptional regulator; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.


ensembl_gene_id: azo2803
symbol: ribD
gene_biotype: protein_coding
description:
  AMP deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.


ensembl_gene_id: azo2804
symbol: azo2804
gene_biotype: protein_coding
description:
  Adenylyltransferase, putative; Dinucleotide-utilizing enzyme involved in molybdopterin and/or thiamine biosynthesis Belongs to the hesA/moeB/thiF family, by similarity. TIGR00292: thiazole biosynthesis enzyme; High confidence in function and specificity.


ensembl_gene_id: azo2805
symbol: azo2805
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homlogy to ebA1048 Azoarcus sp. EbN1 of 65% (gnl|keqq|eba:ebA1048(KEGG)). no domains predicted. no signal peptide. no TMHs.


ensembl_gene_id: azo2806
symbol: ctpa
gene_biotype: protein_coding
description:
  Carboxy-terminal processing protease precursor (EC 3.4.21.102) (C- terminal processing protease). prc: carboxyl-terminal protease; High confidence in function and specificity; Belongs to the peptidase S41A family.


ensembl_gene_id: azo2807
symbol: azo2807
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Homology to peptidase, M23/M37 family InterPro: Peptidase family M23/M37.


ensembl_gene_id: azo2808
symbol: gpmA
gene_biotype: protein_coding
description:
  Putative phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.


ensembl_gene_id: azo2810
symbol: azo2810
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to Rhodanese domain protein, a sulphurtransferase involved in cyanide detoxification. Hypothetical protein slr1261. InterPro: Rhodanese/cdc25 fold; Function unclear.


ensembl_gene_id: azo2811
symbol: grxC
gene_biotype: protein_coding
description:
  Probable glutaredoxin; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.


ensembl_gene_id: azo2812
symbol: secB
gene_biotype: protein_coding
description:
  Protein export chaperone SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.


ensembl_gene_id: azo2813
symbol: azo2813
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to CV1128 of Chromobacterium violaceum of 43% (trembl:Q7NYZ4). Has Signal Peptide. Has PF06347, Protein of unknown function (DUF1058);IPR010466; This family consists of several hypothetical bacterial proteins of unknown function. No TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo2814
symbol: gpsA
gene_biotype: protein_coding
description:
  Probable NAD-dependent glycerol-3-phosphate dehydrogenase [NAD(P)+]. Homology to gpsA of B. subtilis of 41% (SWISSPROT:GPDA_BACSU). NAD-dependent glycerol-3-phosphate dehydrogenase catalyzes the reversible reduction of dihydroxyacetone phosphate to glycerol-3-phosphate. InterPro: NAD-dependent glycerol-3-phosphate dehydrogenase (IPR006109) Pfam: NAD-dependent glycerol-3-phosphate dehydrogeanse signal peptide no TMHs apbA_panE: 2-dehydropantoate 2-reductas; High confidence in function and specificity.


ensembl_gene_id: azo2815
symbol: trmL
gene_biotype: protein_coding
description:
  tRNA/rRNA methylase; Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide.


ensembl_gene_id: azo2816
symbol: comF
gene_biotype: protein_coding
description:
  Hypothetical protein yhgH. Members of PRT family are catalytic and regulatory proteins involved in nucleotide synthesis and salvage. The name PRT comes from phosphoribosyltransferase enzymes, which carry out phosphoryl transfer reactions on PRPP, an activated form of ribose-5-phosphate SPROT:P46846: 33% identity, 51% similarity InterPro; IPR000836; PRtransferase. Pfam; PF00156; Pribosyltran; 1 Absence of Signal peptide and Transmembrane helices PPR: pentatricopeptide repeat domain; High confidence in function and specificity.


ensembl_gene_id: azo2817
symbol: bioB
gene_biotype: protein_coding
description:
  Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.


ensembl_gene_id: azo2818
symbol: bioC2
gene_biotype: protein_coding
description:
  Putative biotin synthesis protein; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway.


ensembl_gene_id: azo2819
symbol: ssm
gene_biotype: protein_coding
description:
  Putative hydrolase; TREMBL:Q7NQN9: 48% identity; 66% similarity SPROT:P53078: 28% identity, 47% similarity InterPro :IPR006402; HAD-SF-IA-v3. IPR005833: Hlgnase/hydrlase. IPR005834: Hydrolase. IPR010237; Pyr-5-nucltdase. Pfam PF00702; Hydrolase; 1. PRINTS PR00413; HADHALOGNASE. TIGRFAMs TIGR01509; HAD-SF-IA-v3; 1. TIGR01993; Pyr-5-nucltdase; SSM1 protein. No signal peptide. No transmembrane helices. Could be an enzyme that inactivates 6-azauracil by modifying it. InterPro: Haloacid dehalogenase/epoxide hydrolase family otsB: trehalose-phosphatase; Family membership.


ensembl_gene_id: azo2820
symbol: azo2820
gene_biotype: protein_coding
description:
  Putative acetyltransferase,42% identity to TrEMBL;Q7WFK1, Putative acetyltransferase [BB4270] [Bordetella bronchiseptica(Alcaligenes bronchisepticus)]. Has PF00583:IPR000182;Acetyltransferase (GNAT) family;This family contains proteins with N-acetyltransferase functions.Histone acetylation is carried out by a class of enzymes known as histone acetyltransferases (HATs), which catalyze the transfer of an acetyl group from acetyl-CoA to the lysine E -amino groups on the N-terminal tails of histones. Early indication that HATs were involved in transcription came from the observation that i [...]


ensembl_gene_id: azo2821
symbol: hemB
gene_biotype: protein_coding
description:
  Porphobilinogen synthase; Delta-aminolevulinic acid dehydratase chloroplast precursor (ALADH) (ALAD). InterPro: Delta-aminolevulinic acid dehydratase; High confidence in function and specificity; Belongs to the ALAD family.


ensembl_gene_id: azo2822
symbol: engB
gene_biotype: protein_coding
description:
  Conserved hypothetical GTP-binding protein; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.


ensembl_gene_id: azo2823
symbol: cc42
gene_biotype: protein_coding
description:
  Probable cytochrome c4. Homology to cc4 of A. vinelandii of 42% (sprot|CYC4_AZOVI). Diheme, high potential cytochrome c believed to be an intermediate electron donor to terminal oxidation systems. Pfam: cytochrome C signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo2824
symbol: azo2824
gene_biotype: protein_coding
description:
  Hypothetical protein, 51% identity (59% similarity) to TrEMBL;Q8Y0B0. TrEMBL; Q7NWN1(53% identity). Has PF04305, Protein of unknown function (DUF455).IPR007402. Has no signal Peptide or TMH present; Function unclear.


ensembl_gene_id: azo2825
symbol: moeA2
gene_biotype: protein_coding
description:
  Molybdopterin biosynthesis protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.


ensembl_gene_id: azo2826
symbol: rpiA
gene_biotype: protein_coding
description:
  Putative ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.


ensembl_gene_id: azo2828
symbol: azo2828
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes.


ensembl_gene_id: azo2830
symbol: argA
gene_biotype: protein_coding
description:
  Amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the 'acetylated' ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate. Similar to sprot|ARGA_YERPE (44%) and to sprot|ARGA_ECOLI (43%). Pfam (PF00696): Aspartokinase superfamily Pfam (PF00583): GCN5-related N-acetyltransferase; Specificity unclear.


ensembl_gene_id: azo2831
symbol: azo2831
gene_biotype: protein_coding
description:
  Hypothetical protein, 53% identity (69% similarity) to TrEMBL;Q7NQR2. TREMBL;Q74F81. Has 2 copies of PF03976,IPR005660, Domain of unknown function (DUF344);This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs that are probably functionally important. No Signal Peptide or TMH present.


ensembl_gene_id: azo2832
symbol: azo2832
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.


ensembl_gene_id: azo2833
symbol: suhB2
gene_biotype: protein_coding
description:
  Inositol-1-monophosphatase(IMPase)(Inositol-1- phosphatase)(I-1-Pase).May act by enhancing the synthesis or degradation of phosphorylated messenger molecules. Catalytic activity: myo-inositol 1-phosphate + h(2)o = myo-inositol + phosphate. 36% Inositol_P. Pfam:PF00459; Inositol_P; 1; High confidence in function and specificity.


ensembl_gene_id: azo2834
symbol: azo2834
gene_biotype: protein_coding
description:
  Hypothetical protein, has very weak homology with hits in the database. Has No domains, repeats, motifs or features could be predicted with confidence above threshold scores.


ensembl_gene_id: azo2835
symbol: prkB
gene_biotype: protein_coding
description:
  Probable phosphoribulokinase. Homology to prkB of r. sphaeroides of 59% (sprot|KPP2_RHOSH). Phosphoribulokinase catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms. InterPro: Phosphoribulokinase family (IPR006082) Pfam: Phosphoribulokinase no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo2836
symbol: tkt
gene_biotype: protein_coding
description:
  Putative transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.


ensembl_gene_id: azo2837
symbol: gapA
gene_biotype: protein_coding
description:
  Glyceraldehyde-3-phosphate dehydrogenase(GAPDH)plays an important role in glycolysis and gluconeogenesis by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate.61% GAPDH-I.IPR000173; GAP_dhdrogenase. Pfam:PF02800; Gp_dh_C; 1.PF00044; Gp_dh_N; 1. TIGRFAMs:TIGR01534; GAPDH-I; 1; High confidence in function and specificity.


ensembl_gene_id: azo2838
symbol: azo2838
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to xcc3191 of X. campestris of 41% (trembl|Q8P5Z1). no domains predicted. signal peptide. no TMHs; Function unclear.


ensembl_gene_id: azo2839
symbol: pgk
gene_biotype: protein_coding
description:
  Phosphoglycerate kinaseis an enzyme that catalyses the formation of ATP to ADP and viceversa. In the second step of the second phase in glycolysis, 1,3-diphosphoglycerate is converted to 3-phosphoglycerate,forming one molecule of ATP. If the reverse were to occur,one molecule of ADP would be formed. 59% PGK. Pfam:PF00162; PGK; 1; High confidence in function and specificity.


ensembl_gene_id: azo2840
symbol: azo2840
gene_biotype: protein_coding
description:
  Hypothetical secreted protein. No good homology to the data bank. No domains predicted. Signal peptide reported to be present. No TMH reported present. ssl1: transcription factor ssl1.


ensembl_gene_id: azo2841
symbol: azo2841
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to an orf of the uncultured bacterium 463 of 33% (tremblnew|AAS07979). no domains predicted. no signal peptide. 1 TMH; Conserved hypothetical protein.


ensembl_gene_id: azo2842
symbol: pykA
gene_biotype: protein_coding
description:
  Pyruvate kinase (PK) catalyses the final step in glycolysis, the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP:ADP + phosphoenolpyruvate = ATP + pyruvate. 52% Pyruvate_kinase. Pfam:PF00224; PK; 1.PF02887; PK_C; 1. TIGRFAMs:TIGR01064; pyruv_kin; 1; High confidence in function and specificity.


ensembl_gene_id: azo2843
symbol: fba
gene_biotype: protein_coding
description:
  Putative fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis.


ensembl_gene_id: azo2844
symbol: exaA1
gene_biotype: protein_coding
description:
  Quinoprotein ethanol dehydrogenase precursor (QEDH). Oxidizes primary alcohols and also acts on secondary alcohol, but not highly active on methanol. 73% Bac_PQQ.IPR002372; Bac_PQQ_repeat. Pfam:PF01011; PQQ; 2. Signal peptide:present; High confidence in function and specificity.


ensembl_gene_id: azo2845
symbol: qbdB2
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to qbdB of Pseudomonas putida of 56% (gi|22779360|dbj|BAC15558.1|(NBCI ENTREZ)). No domains predicted. No TMHs. Signal peptide present.,; Conserved hypothetical protein.


ensembl_gene_id: azo2846
symbol: azo2846
gene_biotype: protein_coding
description:
  Sigma-54-dependent transcriptional regulator; Similar to TREMBL:Q9F9U3 (44% identity); TREMBL:Q88H93 (39% identity); SWISSPROT:P28614 (35% identity). InterPro (IPR002078): Sigma-54 factor interaction domain. InterPro (IPR002197): Helix-turn-helix, Fis-type. InterPro (IPR003593): AAA ATPase. Pfam (PF02954): Bacterial regulatory protein, Fis family. Pfam (PF00158): Sigma-54 interaction domain. HTH reporting nucleic acid binding motif; High confidence in function and specificity.


ensembl_gene_id: azo2848
symbol: azo2848
gene_biotype: protein_coding
description:
  Putative AIG2-like protein. Homology to AIG2 of a. thaliana of 27% (sprot|AIG2_ARATH) AIG2 is an Arabidopsis proteins that exhibit RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2. Pfam: AIG2-like family singal peptide no TMHs.


ensembl_gene_id: azo2849
symbol: azo2849
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to AQ_563 of Aquifex aeolicus of 37% (trembl|O66835(SRS)). Has IPR003660;PF00672;HAMP domain:This domain is known as the HAMP domain for histidine kinases, adenylyl cyclases,methyl binding proteins and phosphatases. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. Has IPR000160(GGDEF)domain,this domain is found linked to a wide range of non-homologous domains in a variety of b [...]


ensembl_gene_id: azo2850
symbol: azo2850
gene_biotype: protein_coding
description:
  Putative sugar transport protein; Proline/betaine transporter (Proline porter II) (PPII). STRETCH-INACTIVATED PROLINE/BETAINE TRANSPORTER. PROP IS BOTH AN OSMOSENSOR AND AN OSMOREGULATOR WHICH IS AVAILABLE TO PARTICIPATE EARLY IN THE BACTERIAL OSMOREGULATORY RESPONSE. MEDIATES THE ACTIVE ACCUMULATION OF SOLUTES SUCH AS PROLINE GLYCINE BETAINE STACHYDRINE PIPECOLIC ACID ECTOINE AND TAURINE.PROBABLE MtbA PROTEIN 2A0106: citrate-proton symport; Specificity unclear.


ensembl_gene_id: azo2851
symbol: azo2851
gene_biotype: protein_coding
description:
  Conserved hypothetical glycerophosphoryl diester phosphodiesterase. Homology to TdenA01001091 of Thiobacillus denitrificans of 66% (gnl|keqq|mca:MCA1922(KEGG)).InterPro: Glycerophosphoryl diester phosphodiesterase (IPR004129). Pfam: Glycerophosphoryl diester phosphodiesterase. signal peptide. no TMHs.


ensembl_gene_id: azo2852
symbol: cddD
gene_biotype: protein_coding
description:
  Probable aldehyde dehydrogenase (NAD+). Homology to cddD of R. ruber SC1 of 59% (trembl|Q938F1) Aldehyde dehydrogenases are enzymes which oxidize a wide variety of aliphatic and aromatic aldehydes using NADP as a cofactor. Pfam: Aldehyde dehydrogenase family no TMHs no signal peptide; Family membership.


ensembl_gene_id: azo2853
symbol: azo2853
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to PA3284 of Pseudomonas aeruginosa of 40% (trembl|Q9HYV9(SRS)). No domains predicted. Signal peptide present. No TMH Present; Conserved hypothetical protein.


ensembl_gene_id: azo2854
symbol: azo2854
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to PA3283 of P.aeruginosa of 54% (trembl:Q9HYW0). Has PF05114,Protein of unknown function (DUF692);IPR007801:This family consists of several uncharacterised bacterial proteins. No signal peptide or TMH present.


ensembl_gene_id: azo2855
symbol: azo2855
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to PP2399 of P.putida of 36% (trembl:Q88K92). No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo2856
symbol: azo2856
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to PA4104 of Pseudomonas aeruginosa of 46% (trembl|Q9HWS4(SRS)). No domains predictec. no signal peptide. 4 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo2858
symbol: azo2858
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to CV2972 of C.violaceum of 51% (trembl:Q7NTT1). No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo2859
symbol: estB
gene_biotype: protein_coding
description:
  Probable carboxylesterase. Homology to estB of P. flourescens of 41% (sprot|EST2_PSEFL). Hydrolyzes carboxylic ester bonds with relatively broad substrate specificity. InterPro: Phospholipase/Carboxylesterase(IPR003140); Esterase/lipase/ thioesterase family acitve site (IPR000379) Pfam: Phospolipase/Carboxylesterase no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo2860
symbol: azo2860
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to PJS6w01004232 of Polaromonas sp. JS666 of 53% (gi|54028976|ref|ZP_00361120.1|(NBCI ENTREZ)). InterPro:IPR002035; VWF_A. The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. Pfam:PF00092; VWA; 1. SMART:SM00327; VWA; 1. PROSITE:PS50234; VWFA; MIP: MIP family channel proteins. No signal peptide present. No. of TMH's: 3 (TMHMM predicted); Conserved h [...]


ensembl_gene_id: azo2861
symbol: azo2861
gene_biotype: protein_coding
description:
  Hypothetical protein Rv1480/MT1527/Mb1516. TREMBL:Q7MUE8: 33% identity, 52% similarity. This domain is found in a family of prokaryotic proteins that have no known function. Proteins belonging to this family include hypothetical proteins from eubacteria and archaebacteria. Some of these proteins also contain the Von Willebrand factor, type A domain InterPro: IPR002881; DUF58. Pfam: PF01882; DUF58 Absence of transmembrane helices (TMHMM predicted) cmk: cytidylate kinase; Specificity unclear.


ensembl_gene_id: azo2862
symbol: moxR2
gene_biotype: protein_coding
description:
  MoxR protein, putative; MoxR protein (MxaR protein). MAY BE INVOLVED IN THE REGULATION OF FORMATION OF ACTIVE METHANOL DEHYDROGENASE. TREMBLnew:CAE55395: 54% identity, 71% similarity InterPro:IPR003593; AAA_ATPase. IPR000523; Mg_chelatse_chII. Pfam PF01078; Mg_chelatase; 1. SMART SM00382; AAA; 1 InterPro IPR003593; AAA_ATPas ruvB: Holliday junction DNA helicase Ru; High confidence in function and specificity.


ensembl_gene_id: azo2863
symbol: azo2863
gene_biotype: protein_coding
description:
  Conserved hypothetical serine protease. Homology to PJS6w01004229 of Polaromonas sp. JS666 of 53% (gi|54028973|ref|ZP_00361117.1|(NBCI ENTREZ)). Interpro: HtrA/DegQ protease family (IPR001940); Serine protease,trypsine family (IPR001254). Pfam: Typsin. probable signal peptide. no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo2864
symbol: azo2864
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. TREMBL:Q9CBL9: 33% identity; 52% similarity The von Willebrand factor is a large multimeric glycoprotein found in bloodplasma. Mutant forms are involved in the aetiology of bleeding disorders. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily Hypothetical protein MAV335. InterPro:IPR002035; VWF_A. Pfam:PF00092; VWA; 1. SMART:SM00327; VWA 2_A_01_02: Multidrug resistance protein Presence of Signal peptide (SignalP predicted) Presence of 3 transmembrane helices (TMHMM predicted); Conserved hypothetical protein.


ensembl_gene_id: azo2865
symbol: azo2865
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to CE0355 of C.efficiens of 56% (trembl:Q8FSM8). No domains predicted. No THs. No signal peptide.


ensembl_gene_id: azo2867
symbol: azo2867
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family This protein activates the transcription of the lysA gene encoding diaminopimelate decarboxylase. LysR is also a negative regulator of its own expression. 44% 1 helixturnhelix PF03466 LysR_substrate; 1. HTH reporting nucleic acid binding motif; Specificity unclear.


ensembl_gene_id: azo2868
symbol: ygiD
gene_biotype: protein_coding
description:
  Protocatechuate 4,5-dioxygenase; Putative cytoplasmic protein ygiD, 35% identity to TrEMBL;Q8ZLZ3. TrEMBL;Q8XBP3,Q83JK6. Has PF02900,Catalytic LigB subunit of aromatic ring-opening dioxygenase;IPR004183:The LigAB enzyme (a protocatechuate 4,5-dioxygenase), of Sphingomonas paucimobilis oxidizes protocatechuate (or 3,4-dihydroxybenzoic acid, PCA). The enzyme belongs to the class III extradiol-type catecholic dioxygenase family, which catalyzes the ring-opening reaction of protocatechuate and related compounds; Conserved hypothetical protein.


ensembl_gene_id: azo2869
symbol: azo2869
gene_biotype: protein_coding
description:
  Conserved hypothetical cytochrome B561. Homology to cv3278 of C. violaceum of 69% (trembl|Q7NSZ1). Involved in electronen transport. no domains reported. no signal peptide. 4 TMHs; Family membership.


ensembl_gene_id: azo2870
symbol: azo2870
gene_biotype: protein_coding
description:
  Conserved hypothetical YceI like protein. Homology to CV3277 of C.violaceum of 51% (tremble:Q7NSZ2). Has PF04264, YceI like family;(IPR007372): E. coli YceI is a base-induced periplasmic protein. Its function has not yet been characterised. Signal peptide present. No TMH present; Conserved hypothetical protein; Belongs to the UPF0312 family.


ensembl_gene_id: azo2871
symbol: azo2871
gene_biotype: protein_coding
description:
  Conserved hypothetical YceI like protein. Homology to cv3276 of C. violaceum of 69% (trembl|Q7NSZ3(SRS)) Pfam: YceI like family E. coli. YceI is a base-induced periplasmic protein. Its function has not yet been characterised. signal peptide. no TMHs; Family membership; Belongs to the UPF0312 family.


ensembl_gene_id: azo2872
symbol: azo2872
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to NE1887 of Nitrosomonas europaea of 39% (trembl|Q82TK0). No domains predicted. No signal peptide. TMHMM2 program predicts presence of 1 TMH's; Conserved hypothetical protein.


ensembl_gene_id: azo2873
symbol: purC
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazolesuccinocarboxamide synthase (Phosphoribosylaminoimidazole-succinocarboxamide synthase) (SAICAR synthase); High confidence in function and specificity; Belongs to the SAICAR synthetase family.


ensembl_gene_id: azo2874
symbol: azo2874
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to AGR_C_1551 of A.tumefaciens of 40% (trembl:Q7D0J2). No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo2875
symbol: azo2875
gene_biotype: protein_coding
description:
  Conserved hypothetical protein, 67% similarity to TrEMBL:Q8UH3. No good homology with hits in the DB particularly at the start. Signal peptide reported present. No TMH present; Family membership.


ensembl_gene_id: azo2876
symbol: azo2876
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to cv3790 of C. violaceum of 36% (cvi:CV3790(KEGG). no domains predicted. no signal peptide. 6 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo2877
symbol: prlC
gene_biotype: protein_coding
description:
  Oligopeptidase A counts to the Thimet oligopeptidase family which cleave medium sized peptides. Similar to trembl|Q7VZC9 (49%), to trembl|Q9JX57 (48%) and to sprot|OPDA_ECOLI (51%). Pfam (PF01432): Peptidase family M3; Specificity unclear.


ensembl_gene_id: azo2878
symbol: azo2878
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Low similiraty to glutaredoxin protein Grx. Has a glutathione-disulfide oxidoreductase activity in the presence of nadph and glutathione reductase.Reduces low molecular weight disulfides and proteins (by similarity). Hypothetical protein yjbD. Signal peptide; Function unclear.


ensembl_gene_id: azo2879
symbol: amtE
gene_biotype: protein_coding
description:
  Probable ammonia permease with sensory box/GGDEF domains; Putative ammonium transporter with sensory/GGDEF boxes. TREMBL:Q88M14: 50% identity; 65% similarity; TREMBL:Q7UK31: 46% identity; 58% siilarity InterPro:IPR001633; EAL. IPR000160; GGDEF. IPR001610; PAC. IPR000014; PAS_domain. IPR001905; Ammonium_transpt. IPR003594; ATPbind_ATPase Pfam: PF00563; EAL; PF00990; GGDEF; PF00785; PAC; PF00989; PAS; PF00909; Ammonium_transp SMART SM00267; DUF1; SM00052; DUF2; SM00086; PAC; SM00091; PAS amt: ammonium transporter Nonsecretory protein with signal peptide (SignalP predicted). Presence of 1 [...]


ensembl_gene_id: azo2881
symbol: azo2881
gene_biotype: protein_coding
description:
  Hypothetical protein, has weak homology with other hits in the Database. TrEMBL;Q67LU3(34%). Has Signal Peptide.


ensembl_gene_id: azo2883
symbol: azo2883
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to RPA1091 of R.palustris of 57% (tremble:CAE26534). No domains predicted. No TMH. signal peptide present; Conserved hypothetical protein.


ensembl_gene_id: azo2884
symbol: ksgA
gene_biotype: protein_coding
description:
  Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.


ensembl_gene_id: azo2885
symbol: pdxA
gene_biotype: protein_coding
description:
  4-hydroxythreonine-4-phosphate dehydrogenase; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP).


ensembl_gene_id: azo2886
symbol: surA
gene_biotype: protein_coding
description:
  Putative peptidyl-prolyl cis-trans isomerase; Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation.


ensembl_gene_id: azo2887
symbol: ostA
gene_biotype: protein_coding
description:
  Organic solvent tolerance protein precursor; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.


ensembl_gene_id: azo2888
symbol: azo2888
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to ne0191 of N. europaea of 61% (trembl|Q82XR3). Pfam: DUF227. no signal peptide. no TMHs.


ensembl_gene_id: azo2891
symbol: ubiH
gene_biotype: protein_coding
description:
  Probable 2-octaprenyl-6-methoxyphenol hydroxylase oxidoreductase protein; ubiH; aromatic-ring hydroxylase (flavoprotein monooxygenase) Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone. Ubiquinone biosynthesis pathway, by similarity; High confidence in function and specificity.


ensembl_gene_id: azo2892
symbol: dusB
gene_biotype: protein_coding
description:
  Conserved hypothetical tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily.


ensembl_gene_id: azo2893
symbol: azo2893
gene_biotype: protein_coding
description:
  Putative fis-like DNA-binding protein, 57% Identity to SwissProt;Q8Y231,TrEMBL;Q7P0M2(58% Identity). Has PF02954, Bacterial regulatory protein, Fis family;IPR002197 HTH_Fis; The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli. Some of its functions include inhibiti [...]


ensembl_gene_id: azo2894
symbol: purH
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Bifunctional purine biosynthesis protein purH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) (AICAR transformylase); IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP synthetase) (ATIC)] InterPro: AICARFT/IMPCHase bienzyme; High confidence in function and specificity.


ensembl_gene_id: azo2895
symbol: purD
gene_biotype: protein_coding
description:
  Phosphoribosylamine--glycine ligase (Phosphoribosylglycinamide synthetase) (Glycinamide ribonucleotide synthetase) (GAR synthetase) (GARS); High confidence in function and specificity; Belongs to the GARS family.


ensembl_gene_id: azo2896
symbol: hemF
gene_biotype: protein_coding
description:
  HemF protein; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.


ensembl_gene_id: azo2897
symbol: sulP1
gene_biotype: protein_coding
description:
  Putative sulfate transporter; Sulfate permease, SulP. Permease member of the MFS superfamily, involved in the transport of sulfate. Putative sulfate transporter ychM. InterPro: IPR002645; STAS. IPR001902; Sulph_transpt. Pfam: PF01740; STAS; 1. PF00916; Sulfate_transp; 1. SignalP: present. HIGH-AFFINITY H+/SULFATE COTRANSPORTER THAT MEDIATES THE UPTAKE OF SULFATE BY PLANT ROOTS FROM LOW CONCENTRATIONS OF SULFATE IN THE SOIL SOLUTION; High confidence in function and specificity.


ensembl_gene_id: azo2898
symbol: rpsP
gene_biotype: protein_coding
description:
  30S ribosomal protein S16; High confidence in function and specificity; Belongs to the bacterial ribosomal protein bS16 family.


ensembl_gene_id: azo2899
symbol: rimM
gene_biotype: protein_coding
description:
  Conserved hypothetical 16S rRNA processing protein; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.


ensembl_gene_id: azo2900
symbol: trmD
gene_biotype: protein_coding
description:
  tRNA (guanine-N1-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.


ensembl_gene_id: azo2901
symbol: rplS
gene_biotype: protein_coding
description:
  50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.


ensembl_gene_id: azo2902
symbol: azo2902
gene_biotype: protein_coding
description:
  Probable integral membrane protein; TREMBL:Q8XWQ6: 39% identity, 56% similarity Hypothetical protein HI1703. InterPro: IPR005495; YjgP_YjgQ. Pfam: PF03739;Pfam :DUF214:Predicted permease Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long, contain about 6 transmembrane regions and may be permeases, although there is no verification of this. subcellular location:integral membrane protein (potential). similarity:strong, to h.influenzae hi1703 2a69: Auxin Efflux Carrier TMHMM predicted 6 transmembrane helices; Conserved  [...]


ensembl_gene_id: azo2903
symbol: azo2903
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. TREMBL:Q8XWQ7: 40% identity; 55% similarity: probable integral membrane protein InterPro:IPR005495; YjgP_YjgQ. Pfam:PF03739; YjgP_YjgQ :UbiA : UbiA prenyltransferase family Pfam:DUF112:Integral membrane protein DUF112 Signal peptide present (Signal P predicted). Transmembrane helices: 5 (TMHMM predicted); Conserved hypothetical protein.


ensembl_gene_id: azo2904
symbol: pepA
gene_biotype: protein_coding
description:
  Cytosol aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.


ensembl_gene_id: azo2905
symbol: holC
gene_biotype: protein_coding
description:
  Putative DNA polymerase III chi subunit, 40% Identity to TrEMBL; Q8XWQ9,Q63WC2,Q62LH1. Has PF04364, DNA polymerase III chi subunit, HolC;IPR007459, DNA_pol3_chi; The DNA polymerase III holoenzyme is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either either the tau or gamma product of gene dnax, complexed to delta.delta' and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by incr [...]


ensembl_gene_id: azo2906
symbol: azo2906
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to ebA7176 of Azoarcus sp. EbN1 of 44% (gnl|keqq|eba:ebA7176(KEGG)). no domains predicted. no signal peptide. no TMHs.


ensembl_gene_id: azo2907
symbol: valS
gene_biotype: protein_coding
description:
  ValS protein; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.


ensembl_gene_id: azo2909
symbol: azo2909
gene_biotype: protein_coding
description:
  ABC transporter permease; Similar to TREMBL:Q82VH0 (64% identity); TREMBL:Q9HTW0 (63% identity); TREMBL:Q8FZX1 (64% identity). TMHMM predicting seven transmembrane helices. TC (3.A.1): The ATP-binding Cassette (ABC) Superfamily; Specificity unclear.


ensembl_gene_id: azo2910
symbol: azo2910
gene_biotype: protein_coding
description:
  ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs, TREMBL:Q8FZX0 (58% identity); TREMBL:Q8U6Y9 (59% identity). InterPro (IPR003593): AAA ATPase. InterPro (IPR001687): ATP/GTP-binding site motif A (P-loop). InterPro (IPR003439): ABC transporter. Pfam (PF00005): ABC transpor [...]


ensembl_gene_id: azo2911
symbol: azo2911
gene_biotype: protein_coding
description:
  Membrane fusion protein; HlyD family secretion protein. The secretion of a number of proteins/molecules require the help of members belonging to the ABC transporter family and a membrane fusion protein belonging to the HlyD family, TREMBL:Q8ZLD9 (56% identity); TREMBL:Q8VR08 (56% identity). Pfam (PF00529): HlyD family secretion protein. SignalP reporting signal peptide. TC (8.A.1): The Membrane Fusion Protein (MFP) Family; Family membership.


ensembl_gene_id: azo2912
symbol: oprM3
gene_biotype: protein_coding
description:
  Probable outer membrane efflux protein. Homology to oprM of P. aeruginosa of 47%. Component of an efflux system that confers multidrug or multible antibiotic resistence. InterPro: Outer membrane efflux protein Pfam: Outer membrane efflux protein signal peptide no TMHs; Family membership.


ensembl_gene_id: azo2913
symbol: fimT
gene_biotype: protein_coding
description:
  Putative pre-pilin like protein; In P. aeruginosa fimT and fimU genes contain prepilin-like leader sequences. FimT plays probable a role in fimbrial biogenesis. Similar to trembl|Q87FA9 (30%). Pfam (PF00114): Pilin (bacterial filament) TMHMM reporting one TMH. SignalP reporting Signal peptide; Function unclear.


ensembl_gene_id: azo2914
symbol: pilV
gene_biotype: protein_coding
description:
  Putative prepilin-like protein; In P. aeruginosa the genes pilV and pilE encode prepilin-like proteins involved in type 4 fimbrial biogenesis. Similar to trembl|Q8PJ74 (46%). SignalP reporting Signal Peptide; Function unclear.


ensembl_gene_id: azo2916
symbol: pilX
gene_biotype: protein_coding
description:
  Putative Tfp pilus assembly protein; In P. aeruginosa the PilW and PilX proteins are membrane located, possess the hydrophobic N-terminus characteristic of prepilin-like proteins, and appear to belong to the GspJ and GspK group of proteins that are required for protein secretion in a wide range of Gram-negative bacteria. These genes are involved in the assembly of type 4 fimbriae. Similar to trembl|Q8PJ76 (34%). TMHMM reporting one TMH. SignalP reporting Signal peptide; Function unclear.


ensembl_gene_id: azo2917
symbol: pilY1B
gene_biotype: protein_coding
description:
  Putative Tfp pilus assembly protein; PilY1 is a large protein with C-terminal homology to the PilC2 protein of Neisseria gonorrhoeae, thought to be a fimbrial tip-associated adhesin, and which, like PilY1, is involved in fimbrial assembly. PilY1 appears to be located in both the membrane and the external fimbrial fractions. Similar to pir|H82802 (39%). SignalP reporting Signal peptide; Function unclear.


ensembl_gene_id: azo2918
symbol: pilE
gene_biotype: protein_coding
description:
  Putative prepilin like protein; In P. aeruginosa PilE is probable involved in pilus biogenesis and in twitching motility. Similar to trembl|Q82TX3 (50%) and to pir|G82857 (43%). Pfam (PF00114): Pilin (bacterial filament) SignalP reporting Signal peptide. TMHMM reporting one Tmhelix; Function unclear.


ensembl_gene_id: azo2919
symbol: azo2919
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to rsc0810 of R. solanacearum of 71% (trembl|Q8Y180). InterPro: Uncharacterized protein family UPF0033 (IPR001455). Pfam: Uncharacterized protein family UPF0033. no signal peptide. no TMH; Family membership; Belongs to the sulfur carrier protein TusA family.


ensembl_gene_id: azo2920
symbol: azo2920
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to cv0524 C. violaceum of 42% (trembl|Q7P0P2). Pfam: Peptidase family M48. signal peptide. no TMHs.


ensembl_gene_id: azo2921
symbol: moaC
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein C; Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC family.


ensembl_gene_id: azo2922
symbol: azo2922
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to orf11 of A. vinelandii of 63% (trembl|Q44537). no domains predicted. no signal peptide. no TMHs.


ensembl_gene_id: azo2923
symbol: tupC
gene_biotype: protein_coding
description:
  Probable ATP-binding component of tungstate ABC transporter. Homology to tupC of E. acidaminophilum of 40% (tremble: Q93KD4). PROBABLY PART OF A BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM FOR tungstate. PROBABLY RESPONSIBLE FOR ENERGY COUPLING TO THE TRANSPORT SYSTEM. Pfam: ABC transporter Interpo: ABC-transporter (IPR003439), AAA-ATPase (IPR003593), ATP/GTP-binding site motif A (loopP) (IPR001687) no signal peptide no TMHS; Family membership.


ensembl_gene_id: azo2924
symbol: tupB
gene_biotype: protein_coding
description:
  Probable tungstate permease protein. Homology to tupB of E. acidaminophilum of 40% (tremble: Q93KD5) Permase of an abc-transport system involved in transport of oxyanions. no signal peptide probable 5 TMHs; Family membership.


ensembl_gene_id: azo2925
symbol: azo2925
gene_biotype: protein_coding
description:
  Hypothetical secredted protein. no homology of the entire protein to the data bank. no domains predicted signal peptide no TMHs.


ensembl_gene_id: azo2926
symbol: azo2926
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to orf of P.aeruginosa of 30% (ZP_00137401). No domains predicted. Signal peptide reported present. No TMH reported present; Conserved hypothetical protein.


ensembl_gene_id: azo2927
symbol: azo2927
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to ebA5010 of Azoarcus sp. EbN1 of 40% (gnl|keqq|eba:ebA5010(KEGG)). no domains predicted. no signal peptide. no TMHs.


ensembl_gene_id: azo2928
symbol: azo2928
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to Rgel02003612 of Rubrivivax gelatinosus PM1 of 51% (gi|47572157|ref|ZP_00242203.1|(NBCI ENTREZ)). Pfam: This family ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. This family of proteins have two conserved Glycines at the COOH terminus. MoaD, a protein involved sulphur transfer in molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end. no signal peptide. no TMHs.


ensembl_gene_id: azo2929
symbol: azo2929
gene_biotype: protein_coding
description:
  Putative oxidoreductase. Homology to narC of C. perfringens of 27% (trembl|Q9WX91) InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR001327) Pfam: Pyridine nucleotide-disulfide oxidoreductase no signal peptide no TMHs purD: phosphoribosylamine--glycine lig; Family membership.


ensembl_gene_id: azo2930
symbol: aorA
gene_biotype: protein_coding
description:
  Probable aldehyde ferredoxin oxidoreductase. Homology to aorA of E. acidodaminophilum of 47% (trembl|Q93KC8) InterPro: Aldehyde ferredoxin oxidoreductase (IPR001203) Pfam: Aldehyde ferredoxin oxidoreductase, N-terminus; Aldeyhde ferredoxin oxidoreductase, damains 2&3 no TMHs no signal peptide; High confidence in function and specificity.


ensembl_gene_id: azo2931
symbol: azo2931
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to gsu0911 of G. sulfurreducens of 38% (tremblnew|AAR34238). Pfam: 4Fe-4S binding domain. no signal peptide. no TMHs.


ensembl_gene_id: azo2932
symbol: azo2932
gene_biotype: protein_coding
description:
  Sigma-54 dependent transcriptional regulator; Similar to TREMBL:Q8XUQ7 (42% identity); TREMBL:Q8PPN1 (40% identity); SWISSPROT:P28614 (37% identity). Pfam (PF02954): Bacterial regulatory protein,Fis family. Pfam (PF00158): Sigma-54 interaction domain. HTH reporting nucleic acid binding motif; High confidence in function and specificity.


ensembl_gene_id: azo2933
symbol: exaB1
gene_biotype: protein_coding
description:
  Probable cytochrome c550. Homology to exaB of P. aeruginosa of 57% (trembl|Q9Z4P8) Cytochrome c550 is an essential component of the quinoprotein ethanol oxidation system InterPro: Cytochrome c class I ((IPR003088) Pfam: Cytochrome c signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo2934
symbol: azo2934
gene_biotype: protein_coding
description:
  Conserved hypothetical amino acid-binding protein. Homology to pp2676 of P. putida of 34% (trembl|Q88JH3). PART OF A BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM FOR amino acids. InterPro: Bacterial extracellular solute-binding proteins family 3 (IPR001638); solute binding protein /glutamate receptor (IPR001311). Pfam: Bacterial extracellular solute-binding protein. singal peptide. no TMHs; Specificity unclear.


ensembl_gene_id: azo2935
symbol: azo2935
gene_biotype: protein_coding
description:
  Conserved hypothetical protein TMHMM2 reporting the presence of 1 TMH's. No Signal peptide present. Has 2 WD40 repeats;SMART;SM00320, Beta-transducin (G-beta) is one of the three subunits (alpha, beta, and gamma) of the guanine nucleotide-binding proteins (G proteins) which act as intermediaries in the transduction of signals generated by transmembrane receptors (see IPR001632). The alpha subunit binds to and hydrolyzes GTP; the functions of the beta and gamma subunits are less clear but they seem to be required for the replacement of GDP by GTP as well as for membrane anchoring and re [...]


ensembl_gene_id: azo2936
symbol: azo2936
gene_biotype: protein_coding
description:
  Conserved hypothetical cytochrome B561. Homology to cv3278 of C. violaceum of 41%. Involved in electronen transfer. no domains. no signal peptide. 4 TMHs; Family membership.


ensembl_gene_id: azo2937
symbol: cyt1
gene_biotype: protein_coding
description:
  Probable cytochrome c-552 precursor. Homology to cyt of N. europaea of 50% (sprot|C552_NITEU). ELECTRON DONOR FOR CYTOCHROME CD1 IN NITRITE AND NITRATE RESPIRATION. InterPro: Cytochrome c class I (IPR003088); Cytochrome c, class ID (IPR002324); cytochrome c, class IC (IPR008168) Pfam: cytochrome c signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo2938
symbol: azo2938
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to OB2533 of O.iheyensis of 64% (trembl:Q8ENF0). Has PF05610,Protein of unknown function (DUF779);IPR008497;This family consists of several bacterial proteins of unknown function. No signal peptide or TMH present.


ensembl_gene_id: azo2939
symbol: aldA
gene_biotype: protein_coding
description:
  Aldehyde dehydrogenase (NAD+). Homology to aldA of X. autotrophicus of 76% (trembl|O50203). Aldehyde dehydrogenases are enzymes which oxidize a wide variety of aliphatic and aromatic aldehydes using NADP as a cofactor. InterPro: Aldehyde dehydrogenase family (IPR002086) Pfam: Aldehyde dehydrogenase family no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo2940
symbol: azo2940
gene_biotype: protein_coding
description:
  Sigma-54 dependent transcriptional regulator; Similar to TREMBL:Q7P122 (29% identity); TREMBL:Q87YQ3 (29% identity); SWISSPROT:P28614 (28% identity). Pfam (PF00158): Sigma-54 interaction domain; Specificity unclear.


ensembl_gene_id: azo2941
symbol: zitB
gene_biotype: protein_coding
description:
  Zinc transporter zitB (formaly ybgR).Involved in zinc efflux across the cytoplasmic membrane thus reducing zinc accumulation in the cytoplasm and rendering bacteria more resistant to zinc. It may contribute to zinc homeostasis at low concentrations of zinc (By similarity).The E.coli zitB gene encodes a Zn(II) transporter belonging to the cation diffusion facilitator family; High confidence in function and specificity.


ensembl_gene_id: azo2942
symbol: azo2942
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to PSPTO5055 of P.syringae of 36% (trembl:Q87V84). No domains predicted. No signal peptide or TMH reported present.


ensembl_gene_id: azo2943
symbol: azo2943
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to PSPTO5054 of P.syringae of 35% (trembl:Q87V85). No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo2944
symbol: azo2944
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to ws0556 of W. succinogenes of 51% (trembl|Q7MSD6). Pfam: DUF411. The function of the members of this bacterial protein family is unknown. Some members may be involved in conferring cation resistance. signal peptide. TMH in signal peptide; Conserved hypothetical protein.


ensembl_gene_id: azo2946
symbol: copR
gene_biotype: protein_coding
description:
  Two component response regulator; Transcriptional activator protein,; High confidence in function and specificity.


ensembl_gene_id: azo2947
symbol: azo2947
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to pp5391 of P. putida of 31% (trembl|Q88BZ2). no domains predicted. signal peptide. no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo2948
symbol: azo2948
gene_biotype: protein_coding
description:
  Putative hydrolase; AAH:63279: 42% identity, 55% similarity Anti-oncogene; SH3 domain; Repeat; Description:SAM and SH3 domains containing protein 1 (proline-glutamate repeat-containing protein). Gene name(s) sash1 or pepe1 contains 1 SH3 domain. similarity: contains 2 sterile alpha motif (SAM) domains May have a role in a signaling pathway. Could act as a tumor supressor. InterPro: IPR001660; SAM. IPR001452: SH3. Pfam:PF00536; SAM; 2. PF00018:SH3; 1. SMART:SM00454; SAM; Function unclear.


ensembl_gene_id: azo2949
symbol: czcC
gene_biotype: protein_coding
description:
  Putative outer membrane efflux protein involved in cobalt-zinc-cadmium resistance (Cation efflux system protein czcC). Homology to czcC of R. eutropha of 24%. czcC protein appears to modify the specificity of the system perhaps by acting on the czcB protein. When the czcC protein is added to czcA and czcB the efflux systems gained specificity for Cd(2+)and Co(2+) signal peptide no TMHs; Family membership.


ensembl_gene_id: azo2950
symbol: azo2950
gene_biotype: protein_coding
description:
  Multicopper oxidases are enzymes that possess three spectroscopically differentcopper centers. Similar to TREMBL:Q7X4G1 (71% identity); TREMBL:Q8U8U7 (71% identity); TREMBL:Q92ZC7 (70% identity). InterPro (IPR001117): Multicopper oxidase type 1. Pfam (PF00394): Multicopper oxidase. SignalP reporting signal peptide; Function unclear.


ensembl_gene_id: azo2951
symbol: azo2951
gene_biotype: protein_coding
description:
  CopC: copper tolerance protein.CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm. 43% Cu-oxidase. InterPro:IPR008972; Cupredoxin. Signal pepetide:present. TMhelix:1; Function unclear.


ensembl_gene_id: azo2952
symbol: azo2952
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to SMc02284 of S. meliloti of 38% (trembl|Q92S41(SRS)). Has PF07076:IPR009780;Protein of unknown function (DUF1344):This family consists of several short,hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium,Agrobacterium and Brucella species. The function of this family is unknown. Signal peptide predicted. No TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo2953
symbol: azo2953
gene_biotype: protein_coding
description:
  Conserved hypothetical outer membrane efflux. Homology to ebA2169 Azoarcus sp. EbN1 of 68% (gnl|keqq|eba:ebA2169(KEGG)). Pfam: Outer membrane efflux protein. signal peptide. probable 1 TMH in signal peptide; Conserved hypothetical protein.


ensembl_gene_id: azo2954
symbol: cusB
gene_biotype: protein_coding
description:
  Cation efflux transmembrane protein; Putative membrane fusion protein silB precursor. COMPONENT OF THE SIL CATION-EFFLUX SYSTEM THAT CONFERS RESISTANCE TO SILVER. MAY BE PART OF A THREE-COMPONENT CATION/PROTON ANTIPORTER; High confidence in function and specificity.


ensembl_gene_id: azo2955
symbol: azo2955
gene_biotype: protein_coding
description:
  Putative cation efflux system protein; Region start changed from 3242195 to 3242423 (-228 bases); Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: azo2956
symbol: azo2956
gene_biotype: protein_coding
description:
  Similar to E.coli CopA: copper transporting P-type ATPase protein, involved in the uptake and metabolism of copper(EC 3.6.3.4).Involved in copper transport(By similarity). Putative cation transporting P-type ATPase (EC 3.6.3.-); High confidence in function and specificity.


ensembl_gene_id: azo2957
symbol: azo2957
gene_biotype: protein_coding
description:
  Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs. HTH predicted.


ensembl_gene_id: azo2960
symbol: azo2960
gene_biotype: protein_coding
description:
  Conserved hypothetical transporter; 27% similarity to Hypothetical protein ycxA (ORF5)of Bacillus subtilis. 12 predicted transmembrane helices with signal peptide. 54% identity, 69% similarity to Pseudomonas putida membrane protein. InterPro: General substrate transporters 2A0111: Oxalate/Formate Antiporter; Function unclear.


ensembl_gene_id: azo2961
symbol: azo2961
gene_biotype: protein_coding
description:
  Hypothetical secreted protein. No homology to the data bank. No domains predicted. No TMHs. Has Signal peptide.


ensembl_gene_id: azo2962
symbol: sigZ
gene_biotype: protein_coding
description:
  Putative RNA polymerase sigma factor sigZ. The sigma factor is an initiation factor that promotes attachment of the RNA polymerase to specific initiation sites and then is released. Similar to SWISSPROT: sprot|SIGZ_BACSU (23% Bacillus subtilis, RNA polymerase sigma factor SigZ) / sprot|RPSH_PSEAE (28% Pseudomonas aeruginosa, RNA polymerase sigma-h factor (sigma-30), AlgU or AlgT) InterPro: IPR000838 Sigma70_ECF. Pfam: PF07638 ECF sigma factor; High confidence in function and specificity.


ensembl_gene_id: azo2963
symbol: chrA
gene_biotype: protein_coding
description:
  Probable chromate transport protein.This protein reduces chromate accumulation and is essential for chromate resistance.Integral membrane protein.Induced by chromate. 27% Chromate_transpt. Pfam:PF02417; Chromate_transp; 2. TIGRFAMs:TIGR00937; 2A51; 1. TMHelix: 11. InterPro: Chromat transporter 2A51: Chromate Ion Transporter; High confidence in function and specificity.


ensembl_gene_id: azo2964
symbol: chrB
gene_biotype: protein_coding
description:
  Probable Chromate resistance signal peptide protein, 49% Identity to TrEMBL; Q7NZK1, Q8XSC4. Has Signal Pepride.


ensembl_gene_id: azo2965
symbol: azo2965
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Protein yhhW. SPROT:P46852: 51% identity, 69% similarity entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body InterPro; IPR007113; Cupin_sup. InterPro; IPR003829; Pirin_N. Pfam; PF02678; Pirin; TIGR00292: thiazole biosynthesis enzyme Absence of transmembrane helices (TMHMM predicted); Function unclear.


ensembl_gene_id: azo2966
symbol: azo2966
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to VPA0043 of Vibrio parahaemolyticus of 64% (trembl|Q87K55). Pfam: TQO small subunit DoxD. DoxD is a subunit of the terminal quinol oxidase present in the plasma membrane of Acidianus ambivalens, with calculated molecular mass of 20.4 kDa. Thiosulphate:quinone oxidoreductase (TQO) is one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon Acidianus ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subuni [...]


ensembl_gene_id: azo2967
symbol: hupR
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family,; Family membership; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: azo2968
symbol: wrbA1
gene_biotype: protein_coding
description:
  Probable trp repressor binding protein (flavodoxin); SPROT:Q92PU3: 71% identity; 82% similarity Flavoprotein wrbA1. cofactor:binds 1 fmn per monomer (by similarity). similarity:belongs to the wrba family; contains 1 flavodoxin-like domain. InterPro:IPR008254; Flav_nitox_synth. IPR001226; Flavodoxin. Pfam: PF00258; flavodoxin; 1. Absence of signal peptide (Signal P predicted) and transmembrane helices (TMHMM predicted) met_pdase_I: methionine aminopeptidase t; High confidence in function and specificity.


ensembl_gene_id: azo2969
symbol: azo2969
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to ebA582 of Azoarcus sp. EbN1 of 37% (gnl|keqq|eba:ebA582(KEGG)). No domains predicted. Signal P reporting signal peptide. No TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo2971
symbol: azo2971
gene_biotype: protein_coding
description:
  Putative two-component sensor histidine kinase,only very low similarity to SWISSPROT: sprot|DEGS_BACBR (13% Bacillus brevis, DegS) InterPro: IPR003661 His_kinA_N. Pfam: PF00672 HAMP domain. PF02518 Histidine kinase-, DNA gyrase B-, phytochrome-like ATPase TMHMM reporting 2 transmembrane helices. Sensor protein degS (EC 2.7.3.-). INVOLVED IN A SENSORY TRANSDUCTION PATHWAY THAT AFFECT THE PRODUCTION OF ENZYMES THAT DEGRADE POLYMERIC CARBON AND NITROGEN SOURCES. DEGS PROBABLY ACTS AS A KINASE THAT PHOSPHORYLATES DEGU; Function unclear.


ensembl_gene_id: azo2973
symbol: azo2973
gene_biotype: protein_coding
description:
  Pentapeptide repeat family protein, 36% identity(46% similarity) to TrEMBL;Q88JH6. Signal P reporting Signal Peptide present. Has 3 copies of PF00805,Pentapeptide repeats;IPR001646, 5peptide_repeat;These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid; Conserved hypothetical protein.


ensembl_gene_id: azo2974
symbol: exaB2
gene_biotype: protein_coding
description:
  Putative cytochrome c550. Homology to exaB of P. aeruginosa of 37% (trembl|Q9Z4P8). Cytochrome c550 is an essential component of the quinoprotein ethanol oxidation. InterPro: Cytochrome c class I (IPR003088) Pfam: cytochrome c signal peptide no TMHs; Function unclear.


ensembl_gene_id: azo2975
symbol: exaA3
gene_biotype: protein_coding
description:
  Quinoprotein ethanol dehydrogenase precursor (QEDH). Oxidizes primary alcohols and also acts on secondary alcohol, but not highly active on methanol. 53% Bac_PQQ.IPR002372; Bac_PQQ_repeat. Pfam:PF01011; PQQ; 2. Signal peptide:present. TMhelix:1; High confidence in function and specificity.


ensembl_gene_id: azo2976
symbol: azo2976
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to PP2677 of P. putida of 35% (trembl|Q88JH2(SRS)). No domains predicted. Signal peptide present. No TMH detected; Conserved hypothetical protein.


ensembl_gene_id: azo2977
symbol: cphA
gene_biotype: protein_coding
description:
  Putative beta lactamase precursor; Conserved Hypothetical protein (pir:H95862; 47% identity), putative hydrolase (TREMBL: Q88JH1; 54% identity, 66% similarity) putative cyclase (TREMBL: Q93IZ0) putative alkylsufatase/betalactamase (rba:RB11502) Metallo beta lactamase superfamily (Pfam) Signal P; TMHMM reporting transmembrane helices S18: ribosomal protein S18; High confidence in function and specificity.


ensembl_gene_id: azo2978
symbol: azo2978
gene_biotype: protein_coding
description:
  Putative TonB-dependent receptor; Similar to FepA, an iron regulated outer membrane protein. FepA is a receptor for the siderophore complex ferric enterobactin and for colcins B and D. INVOLVED IN THE INITIAL STEP OF IRON UPTAKE BY BINDING FERRIC ENTEROBACTIN THAT ALLOWS E. COLI TO EXTRACT IRON FROM THE ENVIRONMENT. Probable tonB-dependent receptor yncD precursor. InterPro: TonB-dependent receptor protein; High confidence in function and specificity.


ensembl_gene_id: azo2982
symbol: azo2982
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to an orf of M. magnetotacticum of 33% (ZP_00053175). No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo2983
symbol: azo2983
gene_biotype: protein_coding
description:
  Putative Transposase,38% identity(55% similarity)to TrEMBL;Q877R1, Putative receptor protein (Transposase) [BT1893] [Bacteroides thetaiotaomicron VPI-5482]. Has PF01609:Transposase DDE domain;Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for  [...]


ensembl_gene_id: azo2984
symbol: azo2984
gene_biotype: protein_coding
description:
  Hypothetical secreted protein. no homology to the data bank. Pfam: DUF1555. signal peptide. TMH in signal peptide.


ensembl_gene_id: azo2985
symbol: tnkS
gene_biotype: protein_coding
description:
  Putative tankyrase type protein; Tankyrase 2 (EC 2.4.2.30) (TANK2) (Tankyrase II) (TNKS-2) (TRF1- interacting ankyrin-related ADP-ribose polymerase 2) (Tankyrase-like protein) (Tankyrase-related protein). May regulate vesicle trafficking and modulate the subcellular distribution of SLC2A4/GLUT4-vesicles. Has PARP activity and can modify TRF1 and thereby contribute to the regulation of telomere length. TREMBL:Q800E0:34%; Q8YTG9:36% identity. InterPro: Ankyrin-repeat Mop: molybdenum-pterin binding domain Presence of signal peptide (SignalP) but absence of transmembrane helices; Function  [...]


ensembl_gene_id: azo2986
symbol: azo2986
gene_biotype: protein_coding
description:
  Putative methyltransferase; Similar to TREMBL:Q82SQ0 (50% identity, 67% similarity); Function unclear.


ensembl_gene_id: azo2988
symbol: chrR
gene_biotype: protein_coding
description:
  Probable chromate reductase. Homology to chrR of E. coli of 49% (tremblnew|AAK62985). Reduction of chromate (Cr(VI)) to Cr(III).no no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo2989
symbol: katG
gene_biotype: protein_coding
description:
  Putative catalase/peroxidase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.


ensembl_gene_id: azo2990
symbol: azo2990
gene_biotype: protein_coding
description:
  Putative isochorismatase; Similar to TREMBL:Q88PY7 (90% identity); SWISSPROT:P21367 (87% identity); TREMBL:Q7W0U0 (85% identity). InterPro (IPR000868): Isochorismatase hydrolase. Pfam (PF00857): Isochorismatase family; Specificity unclear.


ensembl_gene_id: azo2991
symbol: azo2991
gene_biotype: protein_coding
description:
  Hypothetical protein PA2418. Pirin related protein of unknown function. TREMBL:Q7VUX8: 69% identity, 81% similarity. InterPro:IPR008778; Pirin_C. IPR003829; Pirin_N. Pfam: PF02678; Pirin; 1. PF05726; Pirin_C InterPro: DUF209 No signal peptide present (Signal P predicted). No transmembrane helices present (TMHMM predicted). hypD: hydrogenase expression/formation pr; Specificity unclear; Belongs to the pirin family.


ensembl_gene_id: azo2995
symbol: azo2995
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to IL2513 of Idiomarina loihiensis of 37% (gnl|keqq|ilo:IL2513(KEGG)). no domains predicted. no signal peptide. 1 TMH; Conserved hypothetical protein.


ensembl_gene_id: azo2996
symbol: azo2996
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to PA2403 of Pseudomonas aeruginosa of 38% (trembl|Q8G8F6). Has 3 copies of PF03929, PepSY-associated TM helix;IPR005625 pEPsy_tm; This domain represents a conserved TM helix found in bacterial proteins. Has PF03413, Peptidase propeptide and YPEB domain; IPR005075,Propep_PepSY:This region is likely to have an protease inhibitory function (personal obs:C Yeats). This region is likely to have an protease inhibitory function (personal obs:C Yeats). This model is likely to miss some members of this family as the separation from signal to no [...]


ensembl_gene_id: azo2997
symbol: fhuF
gene_biotype: protein_coding
description:
  Putative TonB-dependent receptor; Ferrioxamine B receptor precursor, FhuF. Iron-regulated outer membrane protein that bind and uptake ferrioxamine in association with the TonB protein. Involved in the reduction of ferric iron in cytoplasmic ferrioxamine B. Binds 1 2Fe-2S cluster. In e.coli the fhuF gene reacts very sensitive to minor changes of Fe2+ and Fur(Ferric uptake regulator). SWISSPROT: FOXA_SALTY. Prim. accession #:Q56145 EMBL: AE008712; AAL19318.1; AF060876; AAC15464.1; U62282; AAB04552.1; InterPro:IPR000531; TonB_boxC. Pfam: PF00593; TonB_dep_Rec; 1. PROSITE: PS00430; TONB_DE [...]


ensembl_gene_id: azo2998
symbol: azo2998
gene_biotype: protein_coding
description:
  Hypothetical protein predicted by Glimmer/Critica. InterPro: Esterase/lipase/thioesterase family active site (IPR000379), GCN5-realted N-actetyltransferase (IPR000182). no signal peptide. no TMHs.


ensembl_gene_id: azo2999
symbol: azo2999
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to NE2572 of N.europaea of 46% (tremble:Q82RZ3). Has PF05951, Bacterial protein of unknown function (DUF882);IPR010275; This family consists of a series of hypothetical bacterial proteins of unknown function. Signal Peptide Present. No TMH present; Conserved hypothetical protein.


ensembl_gene_id: azo3000
symbol: ycbB
gene_biotype: protein_coding
description:
  Putative periplasmic protein [ycbB], 39% identity(57% similarity) to TrEMBL;Q82RZ2.Q9A853(30% identity) Signal Peptide Present. Has PF01471, Putative peptidoglycan binding domain; IPR002477 PG_binding; This domain, peptidoglycan binding domain 1, may have a general peptidoglycan binding function. It is composed of three helices and is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation. * Muramoyl-pentapeptide carboxypeptidase (EC:3.4.17.8) * N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall) hydrolase, autolysin, EC:3.5.1.28) * A [...]


ensembl_gene_id: azo3001
symbol: azo3001
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to XAC149 of X. axonopodis of 41% (trembl|Q8PLP4(SRS)). Pfam: DedA family. This family combines the DedA related proteins and YIAN/YGIK family. Members of this family are not functionally characterised. These proteins contain multiple predicted transmembrane regions. no signal peptide. 4 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo3002
symbol: hutG
gene_biotype: protein_coding
description:
  Conserved hypothetical formylglutamte amindohyrolase. Homology to hutG of B. bronchiseptica of 53% (trembl|Q7WEA2). Catalyses the terminal reaction in the five-step pathway for histidine utilisation. no signal peptide. no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo3003
symbol: azo3003
gene_biotype: protein_coding
description:
  Conserved hypothetical transcriptional regulator,LysR family. Similar to SWISSPROT: sprot|NTCB_SYNP7 (18% Synechococcus sp. (strain PCC 7942) (Anacystis nidulans R2), nitrogen assimilation transcriptional activator NtcB) Pfam: PF00126 Bacterial regulatory helix-turn-helix protein, lysR family. HTH reporting nucleic acid binding motif; Family membership.


ensembl_gene_id: azo3004
symbol: soxB
gene_biotype: protein_coding
description:
  Sarcosine oxidase, subunit beta counts to the FAD dependent oxidoreductases. Similar to trembl|Q82M71 (29%) and to trembl|Q9V0K7 (26%). Pfam (PF01266): D-amino acid oxidase ProSite (PS50205): NAD binding site ProSite (PS50204): UBA/THIF-type NAD/FAD binding fold; Specificity unclear.


ensembl_gene_id: azo3005
symbol: etfB4
gene_biotype: protein_coding
description:
  Probable electron transfer flavoprotein, beta subunit. Homology to etfB of B. japonicum of 54% (sprot|ETFB_BRAJA). The electron transfer flavoprotein serves as a specific electron acceptor for some dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase)(By similarity). InterPro: Electron transfer flavoprotein beta-subunit (IPR000049) Pfam: Electron transfer flavoprotein beta subunit no signal peptide no TMHS; High confidence in function and specificity.


ensembl_gene_id: azo3006
symbol: etfA4
gene_biotype: protein_coding
description:
  Probable electron transfer flavoprotein, alpha subunit. Homology to etfA of B. japonicum of 49% (sprot|ETFA_BRAJA) The electron transfer flavoprotein serves as a specific electron acceptor for some dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase)(By similarity). InterPro: Electron transfer flavoprotein alpha-subunit (IPR001308) Pfam: Electron transfer flavoprotein alpha subunit no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo3007
symbol: azo3007
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to BB1278 of B.bronchiseptica of 35% (trembl:Q7WMW2). Has PF05962,Bacterial protein of unknown function (DUF886);IPR010282; This family consists of several hypothetical bacterial proteins of unknown function. No signal peptide or TMH present.


ensembl_gene_id: azo3010
symbol: glnT
gene_biotype: protein_coding
description:
  Glutamine synthetase III plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. Similar to trembl|Q98A06 (58%) and to sprot|GLN3_RHILP (38%). Pfam (PF03951): Glutamine synthetase, beta-Grasp domain Pfam(PF00120): Glutamine synthetase, catalytic domain; High confidence in function and specificity.


ensembl_gene_id: azo3011
symbol: glxB
gene_biotype: protein_coding
description:
  Glutamine amidotransferase, class-II protein, glxB (purF). Similar to sprot|GLXB_RHIME (46%) and to trembl|Q882P3 (49%). Glutamine amidotransferase catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase). On the basis of sequence similarities two classes of GATase domains have been identified class-I and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase, which cat [...]


ensembl_gene_id: azo3012
symbol: glxC
gene_biotype: protein_coding
description:
  Probable protein GlxC. Similar to sprot|GLXC_RHIME (59%) and to pir|A96211 (51%). Pfam (PF01493): GXGXG; Family membership.


ensembl_gene_id: azo3013
symbol: glxD
gene_biotype: protein_coding
description:
  Glutamate synthase, large subunit. Similar to sprot|GLXD_RHIME (87%). Glutamate synthase (GltS) is a complex iron-sulphur flavoprotein that catalyses the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the bacterial, yeast and plant pathways for ammonia assimilation. Pfam: Conserved region in glutamate synthase; Specificity unclear.


ensembl_gene_id: azo3014
symbol: glnY
gene_biotype: protein_coding
description:
  PII-like signal transmitter proteins are involved in the regulation of ammonium assimilation and nitrogen fixation. The PII-like proteins differed from each other in details of N-sensing. They were covalently modified by uridylylation upon nitrogen limitation. Similar to trembl|Q9EZQ4 (100%) and to trembl|Q9RBK0 (78%). Pfam: Nitrogen regulatory protein P-II; High confidence in function and specificity.


ensembl_gene_id: azo3015
symbol: amtY
gene_biotype: protein_coding
description:
  Ammonium transporter 1 member 2 (LeAMT1;2). Involved in high affinity ammonium uptake. TREMBL:Q8RP88: 100% identity (published) InterPro: IPR001905; Ammonium_transpt. IPR010256; RH_like_transpt. Pfam: PF00909; Ammonium_transp amt: ammonium transporter SignalP predicted signal peptide (probability 0.999) TMHMM predicted 11 transmembrane helices; High confidence in function and specificity.


ensembl_gene_id: azo3016
symbol: azo3016
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to ECA3203 of Erwinia carotovora of 58% (tremble:Q6D293). No domains predicted. Signal peptide present. No TMH present; Conserved hypothetical protein.


ensembl_gene_id: azo3017
symbol: azo3017
gene_biotype: protein_coding
description:
  Outer membrane porin protein 32 precursor (OMP32). Forms anion selective channels; Specificity unclear.


ensembl_gene_id: azo3018
symbol: azo3018
gene_biotype: protein_coding
description:
  Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted .no signal peptide. no TMHs.


ensembl_gene_id: azo3019
symbol: azo3019
gene_biotype: protein_coding
description:
  Putative AraC family,transcriptional regulator, 28% Identity to TrEMBL;Q62GH5,Q6QEJ0,Q9HWT4 Has SMART;SM00342,HTH_ARAC, helix_turn_helix, arabinose operon control protein;IPR000005; Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' (HTH) motif. One major subfamily of these proteins is related to the arabinose operon regulatory protein AraC. Except for celD all of these proteins seem to be positive transcriptional factors.Although the sequences belonging to this family differ somewhat in length, in nearly every case the HTH motif is situated towards  [...]


ensembl_gene_id: azo3020
symbol: azo3020
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to aciad2673 of Acinetobacter sp. of 53% (trembl|Q6F937). no domains reported. signal peptide. no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo3021
symbol: thmS2
gene_biotype: protein_coding
description:
  Probable succinate semialdehyde dehydrogenase [NAD(P)+]. Homology to thmS of Pseudonocardia sp. K1 of 46% (trembl|Q9F3V7). Is capable of oxidizing substrates using NADP as cofactor. Pfam: Aldehyde dehydrogenase family no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo3022
symbol: exaA4
gene_biotype: protein_coding
description:
  Quinoprotein ethanol dehydrogenase precursor (QEDH). Oxidizes primary alcohols and also acts on secondary alcohol, but not highly active on methanol. 37% Bac_PQQ.IPR002372; Bac_PQQ_repeat. Pfam:PF01011; PQQ; 2. Signal peptide:present; High confidence in function and specificity.


ensembl_gene_id: azo3023
symbol: azo3023
gene_biotype: protein_coding
description:
  Probable outer membrane receptor TonB-dependent for iron transport. 41% AAC74533.1 InterPro: IPR000531 TonB_receptor.IPR010105; TonB_siderophor. Pfam: PF00593; TonB_dep_Rec; 1. TonB-box domain; High confidence in function and specificity.


ensembl_gene_id: azo3024
symbol: azo3024
gene_biotype: protein_coding
description:
  Hypotheical secreted protein. No homology of the entire protein to the data bank. no domains predicted. no TMHs. signal peptide.


ensembl_gene_id: azo3025
symbol: azo3025
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to ra0176 of S. meliloti of 31% (trembl|Q930L9). Pfam: Uncharacterized ACR, YneC family. no signal peptide. no TMHS.


ensembl_gene_id: azo3026
symbol: azo3026
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to Reut02004453 of Ralstonia metallidurans of 38% (gi|48768314|ref|ZP_00272664.1|(NBCI ENTREZ)). no domains predicted. signal peptide. no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo3027
symbol: azo3027
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to RS04458 of Ralstonia solanacearum of 31% (tremble:Q8Y292). No domains predicted .Signal peptide reported. NO TMH present; Conserved hypothetical protein.


ensembl_gene_id: azo3028
symbol: azo3028
gene_biotype: protein_coding
description:
  Conserved hypothetical peptidase. Homology to rsc0445 of R. solanacearum of 50% (trembl|Q8Y291). Pfam: Peptidas_C39. Lantibiotic and non-lantibiotic bacteriocins are synthesised as precursor peptides containing N-terminal extensions (leader peptides) which are cleaved off during maturation. Most non-lantibiotics and also some lantibiotics have leader peptides of the so-called double-glycine type. These leader peptides share consensus sequences and also a common processing site with two conserved glycine residues in positions -1 and -2. The double- glycine-type leader peptides are unrel [...]


ensembl_gene_id: azo3029
symbol: azo3029
gene_biotype: protein_coding
description:
  Hypothetical secreted protein. No good homology over the entire length in DB. No domains predicted. Signal Peptide present. No TMH present.


ensembl_gene_id: azo3030
symbol: azo3030
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to RS04455 of R.solanacearum of 50% (tremble:Q8Y289). No domains predicted. Signal P reporting signal peptide present. No TMH reported present; Conserved hypothetical protein.


ensembl_gene_id: azo3035
symbol: azo3035
gene_biotype: protein_coding
description:
  Hypothetical membrane protein. no homology to the data bank. no domains predicted. signal peptide. 2 TMHs.


ensembl_gene_id: azo3036
symbol: azo3036
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to Rgel02002356 of Rubrivivax gelatinosus of 47% (gi|47573226|ref|ZP_00243265.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. no TMHs.


ensembl_gene_id: azo3037
symbol: azo3037
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to Rgel02002355 of Rubrivivax gelatinosus of 41% (gi|47573225|ref|ZP_00243264.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. no TMHs.


ensembl_gene_id: azo3038
symbol: fdhA1
gene_biotype: protein_coding
description:
  Probable formate dehydrogenase (NADP+), alpha subunit. Homology to fdh1A of M. extorquens of 60% (trembl|Q8KTI7). InterPro: Prokaryotic molybdopterin oxidoreductases (IPR006655); Respiratory-chain NADH dehydrogenase 75 kD subunit (IPR000283); Ferredoxin (IPR001041); 4Fe-4S ferredoxin, iron-sulfur binding domain (IPR001450) Pfam: 2Fe-2S iron-sulfur cluster binding domain; 4Fe-2S binding doami; Molybdopterin oxidase; Molybdopterin dinucloetide binding no signal peptide no TMHs; High confidence in function and specificity; Belongs to the prokaryotic molybdopterin-containing oxidoreductase [...]


ensembl_gene_id: azo3039
symbol: fdh1B
gene_biotype: protein_coding
description:
  Probable formate dehydrogenase (NADP+), beta subunit Homology to fdh1B of M. extorpuens of 55% (trembl|Q8KTI8) Pfam: Respiratory-chain NADH dehydrogenase 24 kD subunit; Respiratory-chain NADH dehydrogenase 51 kD subunit. no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo3040
symbol: paaH2
gene_biotype: protein_coding
description:
  Probable 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) (Beta- hydroxybutyryl-CoA dehydrogenase) (BHBD). Activity:- 3-acetoacetyl-CoA + NADPH = (S)-3-hydroxybutanoyl-CoA + NADP+ Entry name TREMBL:Q9F9V1 InterPro IPR006108; 3HCDH_C. IPR006176; 3HCDH_N. IPR008927; 6DGDH_C_like. IPR002110; ANK. IPR000205; NAD_BS. Pfam PF00725; 3HCDH; 2. PF02737; 3HCDH_N; 1. Identities = 319/502 (63%) Prediction: Signal peptide Signal peptide probability: 0.906 Number of predicted TMHs: 0; Family membership.


ensembl_gene_id: azo3041
symbol: rubA
gene_biotype: protein_coding
description:
  Probable rubredoxin. Homology to ruba of A. calcoaceticus of 42% (sprot|RUBR_ACIAD). Involved in the hydrocarbon hydroxylating system to convert dodecane to lauric acid, which transfers electrons from NADH to rubredoxin reductase and then through rubredoxin to alkane 1 monooxygenase. Pfam: Rubredoxin no singal peptide no TMHs; Family membership.


ensembl_gene_id: azo3042
symbol: azo3042
gene_biotype: protein_coding
description:
  NADPH quinone oxidoreductase, putative; ZP_00167050: 52% identity; 70% similarity. Quinone oxidoreductase (EC 1.6.5.5) (NADPH:quinone reductase) (Zeta- crystallin). DOES NOT HAVE ALCOHOL DEHYDROGENASE ACTIVITY. BINDS NADP AND ACTS THROUGH A ONE-ELECTRON TRANSFER PROCESS. ORTHOQUINONES ARE THE BEST SUBSTRATES. MAY ACT IN THE DETOXIFICATION OF XENOBIOTICS (BY SIMILARITY). InterPro: Zinc-containing alcohol dehydrogenase superfamily InterPro:IPR002085; Adh_zn_family. Pfam:PF00107; ADH_zinc_N TIGRFAM: 2A0302: arginine/ornithine antiporter tdh: L-threonine 3-dehydrogenase; Function unclear.


ensembl_gene_id: azo3043
symbol: paaG4
gene_biotype: protein_coding
description:
  Putative enoyl-CoA hydratase; COULD POSSIBLY OXIDIZES FATTY ACIDS USING SPECIFIC COMPONENTS (BY SIMILARITY). catalytic activity:-(3s)-3-hydroxyacyl-coa = trans-2(or 3)-enoyl- coa + H(2)o. Entry name:- SWISSPROT:PAAG_ECOLI InterPro:-IPR001753; EnCoA_hydrtse. Pfam:- PF00378; ECH; 1. Identities = 72/262 (27%) Number of predicted TMHs: 0; Family membership; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: azo3044
symbol: ybgC
gene_biotype: protein_coding
description:
  Probable thioesterase; Hypothetical protein HI0386. TREMBL:Q84HI6: 48% identity, 66% similarity 4-hydroxybenzoyl-CoA thioesterase is a protein of 141 amino-acid residues that assemble as an homotetramer. An aspartate in the N-terminal domain is thought to participate in the catalytic mechanism 4-hydroxybenzoyl-CoA + H2 O = 4-hydroxybenzoate + CoA IPR006683; Thioesterase superfamily IPR006684; 4-hydroxybenzoyl-CoA thioesterase Pfam:PF03061; 4HBT; No transmembrane helices (TMHMM predicted) TIGR00051: conserved hypothetical protein; High confidence in function and specificity.


ensembl_gene_id: azo3045
symbol: azo3045
gene_biotype: protein_coding
description:
  Probable lactonase; TREMBL:Q84HI5: 83% identity, 89% similarity from Azoarcus evansii (gene name refereed as ORF2) Haloalkane dehalogenase (EC 3.8.1.5). Catalyzes hydrolytic cleavage of carbon-halogen bonds in halogenated aliphatic compounds leading to the formation of the corresponding primary alcohols halide ions and protons. Has a broad substrate specificity which includes mono- and di- chlorinated and brominated alkanes. The highest activity was found with 12-dibromoethane whereas low activity was measured with the analog 12-dichloroethane. InterPro: Alpha/beta hydrolase fold Descr [...]


ensembl_gene_id: azo3046
symbol: azo3046
gene_biotype: protein_coding
description:
  ATP-binding cassette (ABC) transporters are multidomain membrane proteins, responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q84HI4 (80%) and to trembl|Q89VH8 (45%). Pfam (PF00005): ABC transporter Smart (SM00382): AAA ATPase superfamily ProSite (PS50101): ATP/GTP-binding site motif A (P-loop); Specificity unclear.


ensembl_gene_id: azo3047
symbol: livG1
gene_biotype: protein_coding
description:
  ATP-binding cassette (ABC) transporters are multidomain membrane proteins, responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q84HI3 (79%) and to sprot|LIVG_ECOLI (37%). Pfam (PF00005): ABC transporter ProSite (PS50101): ATP/GTP-binding site motif A (P-loop) Smart (SM00382): AAA ATPase superfamily; Specificity unclear.


ensembl_gene_id: azo3048
symbol: livM3
gene_biotype: protein_coding
description:
  Putative branched-chain amino acid transport permease. Homology to livM of E. coli of 31% as well as genes coding for a new pathway of aerobic benzoate meabolisme in A. evansii (77%). Part of the binding-protein-dependent transport system for branched-chain amino acids. Probably responsible for the translocation of the substrates across the membrane. Pfam: Branched-chain amino acid transport system. probable signal peptide probable 8 TMHs; Specificity unclear.


ensembl_gene_id: azo3049
symbol: azo3049
gene_biotype: protein_coding
description:
  ABC transporter permease protein; Branched-chain amino acid transport system typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system.The integral inner-membrane proteins translocate the substrate across the membrane. Similar to trembl|Q84HI2 (91%), to trembl|Q89VI1 (47%), to sprot|LIVH_ECOLI (27%) and to sprot|BRAD_PSEAE (30%). Pfam (PF02653): Binding-system dependent bacterial transporters (araH, livH/limM  [...]


ensembl_gene_id: azo3050
symbol: livJ
gene_biotype: protein_coding
description:
  Putative leucine-specific binding protein; In enteric bacteria such E. coli and Salmonella typhimurium, periplasmic binding proteins are found to participate in the transport of amino acids, sugars and ions. Leucine-specific binding protein are coded by livK and livJ. Similar trembl|Q93FB9 (84%) and to sprot|LIVJ_ECOLI (21%). Pfam (PF01094): Receptor family ligand binding region Pfam (PF04392): Protein of unknown function (DUF534) SignalP reporting Signal peptide; Specificity unclear.


ensembl_gene_id: azo3051
symbol: azo3051
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology Daro03002253 of Dechloromonas aromatica of 43% (gi|53730397|ref|ZP_00151095.2|(NBCI ENTREZ)). Pfam: Hemerythrin HHE cation binding domain. Iteration of the HHE family found it to be related to Hemerythrin. It also demonstrated that what has been described as a single domain in fact consists of two cation binding domains. Members of this family occur all across nature and are involved in a variety of processes. For instance, in Nereis diversicolor MP2_NERDI binds Cadmium so as to protect the organism from toxicity. However Hemerythrin is classica [...]


ensembl_gene_id: azo3052
symbol: bzdA
gene_biotype: protein_coding
description:
  Probable benzoate-coa ligase; Entry name :- TREMBL:Q84HI0 Entry name :-TREMBL:Q8VUF1 InterPro IPR010071; AA_adenyl_dom. IPR000873; AMP-bind. IPR010192; MenE. Pfam PF00501; AMP-binding; 1 Identities = 414/532 (77%) Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0; Family membership.


ensembl_gene_id: azo3053
symbol: azo3053
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to an orf of A. evnasii of 79% (trembl|Q84HH9). no domains predicted. no signal peptide. no TMHS.


ensembl_gene_id: azo3054
symbol: azo3054
gene_biotype: protein_coding
description:
  Aldehyde dehydrogenase (NAD+). Homology to the aldehyce dehydrogenase of the of the benzoate gene cluster of A. evansii of 81% (trembl|Q84HH8). Aldehyde dehydrogenases are enzymes which oxidize a wide variety of aliphatic and aromatic aldehydes using NADP as a cofactor. Here clustered with genes involved in the aerobic benzoate metabolism. InterPro: Aldehyde dehydrogenase family (IPR002086) Pfam: Aldehyde dehydrogenase family no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo3055
symbol: aroK-2
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.


ensembl_gene_id: azo3056
symbol: azo3056
gene_biotype: protein_coding
description:
  Probable enoyl-coa-hydratase/isomerase; Activity:- (3S)-3-hydroxyacyl-CoA = trans-2(or 3)-enoyl-CoA + H2O Entry name :- TREMBL:Q84HH6 InterPro :-IPR001753; EnCoA_hydrtse. Pfam:- PF00378; ECH; 1. Number of predicted TMHs: 0 Identities = 452/553 (81%); Family membership.


ensembl_gene_id: azo3058
symbol: boxA
gene_biotype: protein_coding
description:
  Benzoyl-CoA oxygenase component A. 84% 4Fe4S_ferredoxin. IPR001709; FPN_cyt_redctse. IPR001433; Oxred_FAD/NAD(P). Pfam:PF00037; Fer4; 2. PF00175; NAD_binding_1; 1; High confidence in function and specificity.


ensembl_gene_id: azo3059
symbol: azo3059
gene_biotype: protein_coding
description:
  Probable 3-ketoadipyl-coa thiolase; Entry name TREMBL:Q84HH5 InterPro IPR002155; Thiolase. Pfam PF02803; Thiolase_C; 1. PF00108; Thiolase_N; 1. Identities = 309/402 (76%) Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0; Family membership; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: azo3060
symbol: azo3060
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to ebA2769 of Azoarcus sp. EbN1 of 56% (gnl|keqq|eba:ebA2769(KEGG)). Pfam: Hemerythrin HHE cation binding domain. Iteration of the HHE family found it to be related to Hemerythrin. It also demonstrated that what has been described as a single domain in fact consists of two cation binding domains. Members of this family occur all across nature and are involved in a variety of processes. For instance, in Nereis diversicolor MP2_NERDI binds Cadmium so as to protect the organism from toxicity. However Hemerythrin is classically described as Oxygen-b [...]


ensembl_gene_id: azo3062
symbol: brkB
gene_biotype: protein_coding
description:
  Exoribonuclease II; Putative Ribonuclease RNASE_BN Protein, 28% identity to TrEMBL;Q8XPH6. Has PF03631, Ribonuclease BN-like family;IPR004664, RNase_BN: This family contains integral membrane proteins with 5 to 6 predicted transmembrane spans. The family include ribonuclease BN that is involved in tRNA maturation P32146. This family of proteins does not seem to contain any completely conserved polar residues that would be expected in a nuclease enzyme, suggesting that many members of this family may not have this catalytic activity; Conserved hypothetical protein.


ensembl_gene_id: azo3063
symbol: azo3063
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to CV2531 of C. violaceum of 37%. Tigrfam: 2A78: Carboxylate/Amino Acid/Amine Tranporter. Pfam: Integral membrane protein DUF6. probable 10 TMHs. probable signal peptide; Conserved hypothetical protein.


ensembl_gene_id: azo3064
symbol: lrp1
gene_biotype: protein_coding
description:
  Leucine-responsive regulatory protein. Mediates a global response to leucine. Exogenous leucine affects the expression of a number of different opreons; Lrp mediates this effect for at least some of these operons. For example it is regulator of the branched-chain amino acid transport genes. Similar to SWISSPROT: sprot|LRP_ECOLI (40% Escherichia coli, leucine-responsive regulatory protein Lrp) InterPro: IPR000485 HTH_AsnC_lrp. Pfam: PF01037 AsnC family. HTH reporting nucleic acid binding motif; High confidence in function and specificity.


ensembl_gene_id: azo3065
symbol: mvaB
gene_biotype: protein_coding
description:
  Hydroxymethylglutaryl-CoA lyase, MvaB. It catalyses the conversion of (S)-3-hydroxy-3-methylglutaryl-CoA to acetyl-CoA and acetoacetate during the final step of ketogenesis and leucine catabolism. Similar to trembl|Q8QGJ4 (60%) and to pir|H83394 (56%). InterPro (PF00682): HMG-CoA Lyase-like family; High confidence in function and specificity.


ensembl_gene_id: azo3066
symbol: fadD3
gene_biotype: protein_coding
description:
  Long-chain fatty-acid-CoA ligase; Esterification, concomitant with transport, of exogenous long-chain fatty acids into metabolically active CoA thioesters for subsequent degradation or incorporation into phospholipids, TREMBL:Q9F9U4 (61% identity); TREMBL:Q7NX49 (69% identity). Pfam (PF00501): AMP-binding enzyme; High confidence in function and specificity.


ensembl_gene_id: azo3067
symbol: ycjD
gene_biotype: protein_coding
description:
  Hypothetical protein ycjD,50% identity(65% similarity) to SwissProt;P45736. Has PF04480, Protein of unknown function (DUF559);IPR007569; No SIgnal Peptide or TMH present. vsr: DNA mismatch endonuclease (vsr).


ensembl_gene_id: azo3068
symbol: accC2
gene_biotype: protein_coding
description:
  This protein is a component of the acetyl coenzyme a carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-coa. Entry name TREMBL:Q8PDU1 InterPro IPR001882; Biotin_BS. IPR005482; Biotin_carb_C. IPR000089; Biotin_lipoyl. IPR005479; CPase_L_D2. IPR005481; CPase_L_N. Pfam PF02785; Biotin_carb_C; 1. PF00364; Biotin_lipoyl; 1. PF00289; CPSase_L_chain; 1. PF02786; CPSase_L_D2; 1. Identities = 382/661 (57%) Preediction: Non-secretory protein Signal peptide probability: 0.000  [...]


ensembl_gene_id: azo3069
symbol: paaG5
gene_biotype: protein_coding
description:
  Probable enoyl-CoA hydratase :- COULD POSSIBLY OXIDIZES FATTY ACIDS USING SPECIFIC COMPONENTS (BY SIMILARITY). Entry name :- SWISSPROT:PAAG_ECOLI InterPro :-IPR001753; EnCoA_hydrtse. Pfam:- PF00378; ECH; 1. Identities = 75/247 (30%) Number of predicted TMHs: 0; Family membership; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: azo3070
symbol: azo3070
gene_biotype: protein_coding
description:
  Probable carboxyltransferase subunit of acetyl-CoA carboxylase; Activity:- ATP + 3-methylcrotonoyl-CoA + HCO3- = ADP + phosphate + 3-methylglutaconyl-CoA Entry name:-TREMBL:Q7WDP0 InterPro:- IPR000022; Carboxyl_trans. Pfam:-PF01039; Carboxyl_trans; 1. Identities = 413/535 (77%) Number of predicted TMHs: 0 Prediction: Non-secretory protein Signal peptide probability: 0.098; Family membership.


ensembl_gene_id: azo3071
symbol: azo3071
gene_biotype: protein_coding
description:
  Hypothetical protein; Region start changed from 3382650 to 3382614 (-36 bases), Changed start codon from att to next gtg.


ensembl_gene_id: azo3073
symbol: azo3073
gene_biotype: protein_coding
description:
  Hypothetical protein. No homology to the data base. Pfam: Protein tyrosine kinase, Protein kinase domain. Interpro: IPR000719 Protein kinase, IPR002290 Serine/threonine protein kinase, IPR001245 Tyrosine protein kinase, IPR011009 Protein kinase-like. No signal peptide. No TMHs.


ensembl_gene_id: azo3076
symbol: azo3076
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to TdenA01001814 of Thiobacillus denitrificans of 40% (gi|52006871|ref|ZP_00334250.1|(NBCI ENTREZ)). Has PF01402, Ribbon-helix-helix protein, copG family; IPR002145 HTH_CopG; The structure of this protein repressor, which is the shortest reported to date and the first isolated from a plasmid, has a homodimeric ribbon-helix-helix arrangement. The helix-turn-helix-like structure is involved in dimerisation and not DNA binding as might have been expected. No TMHs. No signal peptide.


ensembl_gene_id: azo3077
symbol: azo3077
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to xcc3092 of X. campestris of 51% (trembl|Q8P678). Pfam: Plasmid stabilisation system protein. Members of this family are involved in plasmid stabilisation. The exact molecular function of this protein is not known. no signal peptide. no TMHs.


ensembl_gene_id: azo3079
symbol: azo3079
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to stm0409 of S. typhimurium of 46% (tremble:Q7CR38). InterPro: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily. Pfam: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily. no signal peptide. no TMHs.


ensembl_gene_id: azo3081
symbol: azo3081
gene_biotype: protein_coding
description:
  Probable acyl-coa dehydrogenase; Entry name:- TREMBL:Q89LX4 Identities = 310/374 (82%) InterPro IPR006089; Acyl-CoA_dh. IPR006090; Acyl-CoA_dh_C. IPR006091; Acyl-CoA_dh_M. IPR006092; Acyl-CoA_dh_N. IPR009075; AcylCoADH_C_like. IPR009100; AcylCoA_dehyd_NM. Pfam PF00441; Acyl-CoA_dh; 1. PF02770; Acyl-CoA_dh_M; 1. PF02771; Acyl-CoA_dh_N; Family membership.


ensembl_gene_id: azo3083
symbol: azo3083
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein, 44% identity to TrEMBL;Q82UI6. Has PF04247;Invasion gene expression up-regulator, SirB;IPR007360;SirB up-regulates Salmonella typhimurium invasion gene transcription. It is,however, not essential for the expression of these genes. Its function is unknown. No signal peptide. 3 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo3085
symbol: azo3085
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to CV2709 of Chromobacterium violaceum of 40% (trembl|Q7NUI9). Has PF04550;Phage holin family 2:Holins are a diverse family of proteins that cause bacterial membrane lysis during late-protein synthesis. It is thought that the temporal precision of holin-mediated lysis may occur through the buildup of a holin oligomer which causes the lysis. IPR007633;Phage_holin_2. TMHMM2 reporting 12 TMH's Present. no signal peptide; Conserved hypothetical protein.


ensembl_gene_id: azo3086
symbol: azo3086
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to ws1191 of W. succinogenes of 36% (trembl|Q7MRM8). no domains predicted. no signal peptide. no TMHs.


ensembl_gene_id: azo3087
symbol: azo3087
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to CV2710 of C.violaceum of 41% (trembl:Q7NUI8). Pfam: Hemerythrin HHE cation binding domain Iteration of the HHE family found it to be related to Hemerythrin. It also demonstrated that what has been described as a single domain in fact consists of two cation binding domains. Members of this family occur all across nature and are involved in a variety of processes. For instance, in Nereis diversicolor MP2_NERDI binds Cadmium so as to protect the organism from toxicity. However Hemerythrin is classically described as Oxygen-binding through two at [...]


ensembl_gene_id: azo3088
symbol: norC
gene_biotype: protein_coding
description:
  Nitric-oxide reductase subunit C (EC 1.7.99.7) (Nitric oxide reductase cytochrome c subunit) (NOR small subunit).COMPONENT OF THE ANAEROBIC RESPIRATORY CHAIN THAT TRANSFORMS NITRATE TO DINITROGEN (DENITRIFICATION).54% IPR000345; CytC_heme_BS. Pfam; PF00034; Cytochrom_C; 1. SignalP: present TMHelix:1; High confidence in function and specificity.


ensembl_gene_id: azo3089
symbol: norB
gene_biotype: protein_coding
description:
  Nitric-oxide reductase subunit B (EC 1.7.99.7) (Nitric oxide reductase cytochrome b subunit). 69% similarity to the P.stutzeri NorB protein. COMPONENT OF THE ANAEROBIC RESPIRATORY CHAIN THAT TRANSFORMS NITRATE TO DINITROGEN (DENITRIFICATION). NorB IS THE CATALYTIC SUBUNIT OF THE ENZYME COMPLEX. SHOWS PROTON PUMP ACTIVITY ACROSS THE MEMBRANE IN DENITRIFYING BACTERIAL CELLS. THE MONONITROGEN REDUCTION IS PROBABLY COUPLED TO ELECTRON TRANSPORT PHOSPHORYLATION.Belongs to the heme-copper respiratory oxidase family. Swiss Prot: Q59647. IPR000883; COX1. PF00115; COX1; 1. TMHMM:predicted trans [...]


ensembl_gene_id: azo3090
symbol: azo3090
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to RS05091 of R.solanacearum of 76% (trembl:Q8Y1C8). No domains present. No TMHs. No signal peptide.


ensembl_gene_id: azo3091
symbol: trkA1
gene_biotype: protein_coding
description:
  Potassium uptake protein. Part of the constitutive potassium transport systems trkG and trkH. May regulate the transport activity of trkG and trkH systems. Binds to NAD+ and NADH.Peripherally bound to the inner side of the inner membrane via the trkG and trkH proteins. 41% NAD_BS. IPR006037; TrkAC. IPR003148; TrkA_N. Pfam:PF02080; TrkA_C; 1. PF02254; TrkA_N; 1. Pfam:KTN: NAD-binding domain; Specificity unclear.


ensembl_gene_id: azo3092
symbol: trkH1
gene_biotype: protein_coding
description:
  Membrane component of the potassium uptake system. 38% Cat_transpt. IPR004772; K_transptTrk. Pfam: PF02386; TrkH; 1. SignalP.present. TMHelix:9; High confidence in function and specificity.


ensembl_gene_id: azo3093
symbol: azo3093
gene_biotype: protein_coding
description:
  Two component system transcriptional regulatory protein, 53% Identity to TrEMBL;Q7W532,Q8XUU6. Has SMART;SM00448,REC, cheY-homologous receiver domain;IPR001789;CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues. Has OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription] Has PF00486, Transcriptional regulatory protein, C terminal;IPR001867 Trans_reg_C; This domain is almost al [...]


ensembl_gene_id: azo3094
symbol: kdpD2
gene_biotype: protein_coding
description:
  Probable sensor for high-affinity potassium transport system,; High confidence in function and specificity.


ensembl_gene_id: azo3095
symbol: norQ
gene_biotype: protein_coding
description:
  Nitric-oxide reductase ATP/GTP binding component,NorQ. 68% FGGY_kin. TMHMM:present SignalP: present; High confidence in function and specificity.


ensembl_gene_id: azo3096
symbol: azo3096
gene_biotype: protein_coding
description:
  Conserved hypothetical iron-sulfur 4Fe-4S ferredoxin transmembrane protein. Homology to pbprb0648 of P. profundum (tremblnew|CAG22521). Involved in a membrane generated redox signal. Pfam: 4Fe-4S binding domain no signal peptide 4 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo3097
symbol: norD
gene_biotype: protein_coding
description:
  Nitric-oxide reductase accessory cytoplasmic protein; Nitric oxide reductase NorD protein. COMPONENT OF THE ANAEROBIC RESPIRATORY CHAIN THAT TRANSFORMS NITRATE TO DINITROGEN (DENITRIFICATION). FUNCTION UNKNOWN BUT ESSENTIAL FOR THE DENITRIFICATION PROCESS. 35% similarity to B. japonicum NorD. TREMBL:Q89QB3 InterPro:IPR002035; VWF_A. Pfam:PF00092; VWA; 1. InterPro:SM00327:von Willebrand factor type A domain SignalP:present. TMHMM: presence of TMHhelix; High confidence in function and specificity.


ensembl_gene_id: azo3099
symbol: serA
gene_biotype: protein_coding
description:
  D-3-phosphoglycerate dehydrogenase, SerA, is involved in the pathway of serine biosynthesis. Similar to sprot|SERA_ECOLI (61%). InterPro (PF00389): D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain InterPro (PF01842): ACT domain InterPro (PF02826): D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; High confidence in function and specificity.


ensembl_gene_id: azo3100
symbol: rdxB
gene_biotype: protein_coding
description:
  Putative iron-sulfur 4Fe-4S ferredoxin transmembrane protein. Homology to rdxB of R. sphaeroides of 39% (sprot|RDXB_RHOSH). Involved in a membrane generated redox signal; required to maintain repression of photosynthesis gene expression in the presence of oxygen. InterPro: 4Fe-4S ferredoxin iron-sulfur binding domain (IPR001450) Pfam: 4Fe-4S binding doamin no signal peptide probable 5 TMHs; Family membership.


ensembl_gene_id: azo3103
symbol: nosC
gene_biotype: protein_coding
description:
  Conserved hypothetical cytochrome c5. Homology to nosC of A. eutrophus of 62% (trembl|Q7WX89). This basic c-type monoheme cytochrome has an unusually low redox potential compared with mitochondrial cytochrome c. It is reactive with cytochrome c oxidases but not with reductases. InterPro: Cytochrome c class I (IPR003088) Pfam: Cytorchrome C. signal peptide. no TMHs; Family membership.


ensembl_gene_id: azo3105
symbol: azo3105
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to Rgel02003456 of Rubrivivax gelatinosus of 68% (gi|47572283|ref|ZP_00242328.1|(NBCI ENTREZ)). No domains predicted. No signal peptide. No TMHs.


ensembl_gene_id: azo3106
symbol: azo3106
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to TdenA01000391 of Thiobacillus denitrificans of 42% (gi|52008094|ref|ZP_00335471.1|(NBCI ENTREZ)). no domians predicted. signal peptide. TMH in signal peptide; Conserved hypothetical protein.


ensembl_gene_id: azo3107
symbol: nosL
gene_biotype: protein_coding
description:
  Putative NosL protein. Homology to nosL of S. meliloti of 38% (trembl|O07331). NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster. NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocenter assembly. probable signal peptide no TMHs; Family membership.


ensembl_gene_id: azo3108
symbol: nosY
gene_biotype: protein_coding
description:
  Membrane protein nosY precursor.INVOLVED IN COPPER PROCESSING. Part of the ABC transporter complex nosDFY involved in copper import. Probably responsible for the translocation of the substrate across the membrane. 43% Similar to the copper permease protein, nosY in P.stutzeri. TREMBL:Q9F0W1 InterPro:IPR001117; Cu-oxidase. SignalP: present. Number of predicted TMHs:6; High confidence in function and specificity.


ensembl_gene_id: azo3109
symbol: nosF
gene_biotype: protein_coding
description:
  Copper transport ATP-binding protein nosF.INVOLVED IN COPPER PROCESSING/TRANSPORT.Part of the ABC transporter complex nosDFY involved in copper import. 3% ABC_tran; 1. InterPro:IPR003593; AAA_ATPase. IPR003439; ABC_transporter. InterPro:PS50101:ATP/GTP-binding site motif A (P-loop). InterPro:SM00382:AAA ATPase superfamily; High confidence in function and specificity.


ensembl_gene_id: azo3110
symbol: nosD
gene_biotype: protein_coding
description:
  Copper-binding periplasmic protein precursor. INVOLVED IN COPPER PROCESSING AND TRANSPORT; IN THE ASSEMBLY OF THE COPPER CHROMOPHORES OF NITROUS OXIDE REDUCTASE.Part of the ABC transporter complex nosDFY involved in copper import. Similar to the putative periplasmic-binding protein nosD precursor from: P.fluorescens (36%)TREMBL:Q9F0W3 InterPro:IPR006633; CASH. IPR007742; NosD.IPR006626; PbH1. Pfam:PF05048; NosD; 1. Signal peptide: present; High confidence in function and specificity.


ensembl_gene_id: azo3111
symbol: nosRb
gene_biotype: protein_coding
description:
  Conserved hypothetical transcriptional activator for nitrous-oxide reductase, C-termial domain. Homology to nosr (C-terminal domain) of Azoarcus sp. EbN1 of 74% (gnl|keqq|eba:ebB224(KEGG)). no domains predicted. no signal peptide. probable 3 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo3112
symbol: nosRa
gene_biotype: protein_coding
description:
  Transcriptional activator for nitrous-oxide reductase, N-terminal domain; Regulatory protein nosR. Transcriptional activation of the nitrous-oxide reductase gene nosZ. Similar to SWISSPROT: sprot|NOSR_PSEST (37% Pseudomonas stutzeri (Pseudomonas perfectomarina), regulatory protein NosR). TMHMM reporting 5 transmembrane helices. HTH reporting nucleic acid binding motif; High confidence in function and specificity.


ensembl_gene_id: azo3113
symbol: nosZ
gene_biotype: protein_coding
description:
  Nitrous-oxide reductase. Homology to nosZ of a. eutrophus of 78% (sprot|NOSZ_ALCEU) Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide (By similarity). no domains probable signal peptide no TMHs met_pdase_I: methionine aminopeptidas; High confidence in function and specificity.


ensembl_gene_id: azo3115
symbol: lysC
gene_biotype: protein_coding
description:
  Aspartate kinase (AK) catalyzes the phosphorylation of aspartate. The product of this reaction can then be used in the biosynthesis of lysine or in the pathway leading to homoserine, which participates in the biosynthesis of threonine, isoleucine and methionine. Similar to trembl|Q8RU02 (80%) and to pir|C83531 (74%). Pfam (PF00696): Amino acid kinase family Pfam (PF01842): two ACT domain; High confidence in function and specificity; Belongs to the aspartokinase family.


ensembl_gene_id: azo3116
symbol: azo3116
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to NMA0336 of N.meningitidis of 59% (trembl:Q9JRG4) Has PF01381 Helix-turn-helix:IPR001387:HTH_3;This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases,various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum. No signal peptide or TMH reported present.


ensembl_gene_id: azo3117
symbol: azo3117
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to ne1518 of N. europaea of 43% (trembl|Q82UG8). no domains predicted. no signal peptide. no TMHs.


ensembl_gene_id: azo3118
symbol: azo3118
gene_biotype: protein_coding
description:
  Lyase, putative 6-pyruvoyl tetrahydrobiopterin synthase protein InterPro: 6-pyruvoyl tetrahydropterin synthase TIGRFAM: 6PTHBS: 6-pyruvoyl tetrahydrobiopterin synthase; Specificity unclear.


ensembl_gene_id: azo3119
symbol: azo3119
gene_biotype: protein_coding
description:
  Probable fatty acid desaturase; Entry name:- TREMBL:Q8XWM4 InterPro:- IPR001522; Desaturase. IPR005804; Fa_desat. Pfam:- PF00487; FA_desaturase; 1. Identities = 244/390 (62%) Prediction: Non-secretory protein Signal peptide probability: 0.008 Number of predicted TMHs: 3; Family membership.


ensembl_gene_id: azo3121
symbol: azo3121
gene_biotype: protein_coding
description:
  Putative endonuclease,42% Identity to TrEMBL;Q8XWM2, 33% Identity to TrEMBL;Q8VMF9. Has Signal peptide. Has PLDc, Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodi [...]


ensembl_gene_id: azo3122
symbol: azo3122
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; SUN protein; Specificity unclear; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.


ensembl_gene_id: azo3123
symbol: azo3123
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to ebA651 of Azoarcus sp. EbN1 of 37% (gnl|keqq|eba:ebA651(KEGG)). InterproterPro (IPR000694): Proline-rich region. SignalP reporting signal peptide. no TMHs.


ensembl_gene_id: azo3124
symbol: purN
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.


ensembl_gene_id: azo3125
symbol: azo3125
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to orf58 of Pseudomonas sp. of 42% (trembl|Q937A2(SRS)). No domains predicted. Signal P predicts signal peptide present. No TMH present; Conserved hypothetical protein.


ensembl_gene_id: azo3126
symbol: mutL
gene_biotype: protein_coding
description:
  DNA mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.


ensembl_gene_id: azo3127
symbol: azo3127
gene_biotype: protein_coding
description:
  Hypothetical secreted protein no homology of the entire protein to a protein of similar lengt in the data bank no domains predicted signal peptide no TMHs.


ensembl_gene_id: azo3128
symbol: nikR
gene_biotype: protein_coding
description:
  Nickel responsive regulator protein; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family.


ensembl_gene_id: azo3129
symbol: azo3129
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to orfJ of E. coli of 33% (trembl|O70046). no domains predicted .no signal peptide. no TMHs.


ensembl_gene_id: azo3130
symbol: dnaL
gene_biotype: protein_coding
description:
  DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase [ATP]). CATALYZES EFFICIENT STRAND JOINING ON A SINGLE NICKED DNA. InterPro: ATP-dependent DNA ligase; Specificity unclear.


ensembl_gene_id: azo3131
symbol: miaA
gene_biotype: protein_coding
description:
  MiaA protein; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.


ensembl_gene_id: azo3132
symbol: azo3132
gene_biotype: protein_coding
description:
  Hypothetical protein, 56% identity(71% similarity) with TrEMBL;Q6LK82 Has PF07209, Protein of unknown function (DUF1415);IPR009858; This family consists of several hypothetical bacterial proteins of around 180 residues in length. The function of this family is unknown. Signal peptide or TMH not present. EIIA-man: PTS system fructose subfamily.


ensembl_gene_id: azo3133
symbol: azo3133
gene_biotype: protein_coding
description:
  Hypothetical protein predicted by Glimmer/Critica. no homology of the protein to a protein of similar size. no domains predicted. no signal peptide. no TMHs.


ensembl_gene_id: azo3134
symbol: azo3134
gene_biotype: protein_coding
description:
  RND efflux transporter, permease protein; AcrB/AcrD/AcrF family. Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer, TREMBL:Q9HW27 (38% identity); SWISSPROT:Q57124 (33% identity). InterPro (IPR001036): Acriflavin resistance protein. Pfam (PF00873): AcrB/AcrD/AcrF family. TIGRFAM (TIGR00915): Hydrophobe/Amphiphile Efflux-1 (HAE1) Family protein. TIGRFAM (TIGR00914): Heavy metal efflux pump, CzcA family. TMHMM  [...]


ensembl_gene_id: azo3135
symbol: azo3135
gene_biotype: protein_coding
description:
  Membrane fusion protein; HlyD family secretion protein. The secretion of a number of proteins/molecules require the help of members belonging to the ABC transporter family and a membrane fusion protein belonging to the HlyD family, TREMBL:Q7W437 (52% identity); TREMBL:Q8EFT5 (32% identity). InterPro (IPR006143): Secretion protein HlyD. Pfam (PF00529): HlyD family secretion protein. TMHMM reporting one transmembrane helix. TC (8.A.1): The Membrane Fusion Protein (MFP) Family; Family membership.


ensembl_gene_id: azo3136
symbol: purM
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine cyclo-ligase (Phosphoribosyl-aminoimidazole synthetase) (Phosphoribosylaminoimidazole synthetase) (AIR synthase) (AIR synthetase) (AIRS) InterPro: Phosphoribosylformylglycinamidine cyclo-ligase; High confidence in function and specificity.


ensembl_gene_id: azo3137
symbol: azo3137
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases.It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution. TREMBL:Q82Y01: 39% identity; 58% similarity. TREMBL:Q8XW51: 37% identity; 53% similarity. InterPro:IPR002549 Pfam: PF01594:Protein of unknown function DUF70 Signal P predicted signal peptide and TMHMM predicted transmembrane helices; Conserved hypothetical protein.


ensembl_gene_id: azo3138
symbol: azo3138
gene_biotype: protein_coding
description:
  Putative chromosomal replication initiator protein; Region start changed from 3447165 to 3447246 (-81 bases); Belongs to the DnaA family.


ensembl_gene_id: azo3139
symbol: azo3139
gene_biotype: protein_coding
description:
  Haloacid dehalogenase-like hydrolase family is structurally different from the alpha/beta hydrolase family (abhydrolase). This family includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. Similar to trembl|Q82XZ3 (63%) and to pir|B83604 (47%). Pfam (PF00702): haloacid dehalogenase-like hydrolase; Family membership.


ensembl_gene_id: azo3140
symbol: pcnB
gene_biotype: protein_coding
description:
  Probable poly(A) polymerase; Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control. Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.


ensembl_gene_id: azo3141
symbol: folK
gene_biotype: protein_coding
description:
  2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase (7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase) (HPPK) (6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase) (PPPK). InterPro: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase Pfam:7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; High confidence in function and specificity.


ensembl_gene_id: azo3142
symbol: azo3142
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to PA1577 of Pseudomonas aeruginosa of 69% (trembl|Q9I3E0). Has PF04342, IPR007437;Protein of unknown function, DUF486;This family contains several proteins of uncharacterised function. No signal peptide. 4 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo3143
symbol: azo3143
gene_biotype: protein_coding
description:
  Deoxyguanosine kinase, probable (2.7.1.113) InterPro: Thymidylate kinase DTMP_kinase: thymidylate kinase; Family membership.


ensembl_gene_id: azo3144
symbol: panB
gene_biotype: protein_coding
description:
  3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.


ensembl_gene_id: azo3145
symbol: panC
gene_biotype: protein_coding
description:
  Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.


ensembl_gene_id: azo3147
symbol: pepN
gene_biotype: protein_coding
description:
  PepN protein; Aminopeptidase catalyzes the removal of single amino acids from the amino terminus of small peptides and probable plays a role in their final digestion. Similar to trembl|Q8XXI8 (50%) and to sprot|AMPN_ECOLI (47%). Pfam (PF01433): Aminopeptidase N, APN (CD13); Specificity unclear.


ensembl_gene_id: azo3149
symbol: pma1
gene_biotype: protein_coding
description:
  Probable cation-transporting ATPase protein (EC 3.6.3.-).Could mediate calcium influx.Integral membrane protein.Belongs to the cation transport ATPases family (P-type ATPases). Subfamily IIA. 47% similarity to the cyanobacterium Synechocystis sp. PCC 6803, pma1. protein. SWISSPROT:ATA1_SYNY3.P37367 InterPro:IPR001757; ATPase_E1-E2.IPR006068; Cation_ATPase_C.IPR004014; Cation_ATPase_N.IPR008250; E1-E2_ATPase_reg.IPR000695; H_ATPase.IPR005834; Hydrolase. Pfam:PF00689: Cation_ATPase_C;1. PF00690: Cation_ATPase_N;1. PF00122: E1-E2_ATPase;1. PF00702: Hydrolase; 1. SignalP: present. InterPro [...]


ensembl_gene_id: azo3150
symbol: azo3150
gene_biotype: protein_coding
description:
  Conserved hypothetical RDD family protein. Homology to ne0432 of N. europaea of 42% (trembl|Q82X63(SRS)). Pfam: (by Smart) RDD family This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands. signal peptide.  [...]


ensembl_gene_id: azo3151
symbol: azo3151
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to ebA7126 of Azoarcus sp. EbN1 of 45% (gnl|keqq|eba:ebA7126(KEGG)). No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo3152
symbol: azo3152
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to Daro03002551 of Dechloromonas aromatica of 31% (gi|41723955|ref|ZP_00150845.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. no TMHs.


ensembl_gene_id: azo3153
symbol: azo3153
gene_biotype: protein_coding
description:
  Probable RNA polymerase sigma factor, 62% Identity to TrEMBL;Q8XXN5, Q7P0I2. Has PF04542, Sigma-70 region 2;IPR007627, Sigma70_r2; Region 2 of sigma-70 is the most conserved region of the entire protein. All members of this class of sigma-factor contain region 2. The high conservation is due to region 2 containing both the -10 promoter recognition helix and the primary core RNA polymerase binding determinant. The core binding helix,interacts with the clamp domain of the largest polymerase subunit, beta prime. The aromatic residues of the recognition helix, found at the C-terminus of th [...]


ensembl_gene_id: azo3154
symbol: ilvI
gene_biotype: protein_coding
description:
  Acetolactate synthase isozyme III large subunit (AHAS- III) (Acetohydroxy-acid synthase III large subunit) (ALS-III). InterPro: Acetolactate synthase large subunit biosynthetic type TIGRFAM: acolac_lg: acetolactate synthase large subunit, biosynthetic type; High confidence in function and specificity.


ensembl_gene_id: azo3155
symbol: ilvH
gene_biotype: protein_coding
description:
  Acetolactate synthase small subunit (AHAS) (Acetohydroxy-acid synthase small subunit) (ALS). InterPro: Acetolactate synthase small subunit TIGRFAM: acolac_sm: acetolactate synthase small subunit; High confidence in function and specificity.


ensembl_gene_id: azo3156
symbol: ilvC
gene_biotype: protein_coding
description:
  IlvC protein; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.


ensembl_gene_id: azo3157
symbol: pssA
gene_biotype: protein_coding
description:
  This enzyme, CDP-diacylglycerol--serine O-phosphatidyltransferase, is involved in phospholipid biosynthesis catalyzing the reaction CDP-diacylglycerol + L-serine = CMP + L-1-phosphatidylserine. Entry name:-SWISSPROT:PSS_HELPY identity:- 34% InterPro:-IPR000462; CDP-OH_P_trans. IPR004533; PssA. Pfam:- PF01066; CDP-OH_P_transf; 1. Number of predicted TMHs: 6 Prediction: Non-secretory protein Signal peptide probability: 0.047(YES); Family membership; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: azo3160
symbol: azo3160
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to TREMBL:P95473 (66% identity); TREMBL:Q87X18 (66% identity); TREMBL:Q87TV0 (61% identity).


ensembl_gene_id: azo3161
symbol: inaA
gene_biotype: protein_coding
description:
  Conserved hypothetical InaA protein. Homology to inaA of P. putida of 39% (gnl|keqq|ppu:PP0904(KEGG)). Pfam: Lipopolysaccharide kinase (Kdo/WaaP) family. These lipopolysaccharide kinases are related to protein kinases Pkinase. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of S. e [...]


ensembl_gene_id: azo3162
symbol: leuA1
gene_biotype: protein_coding
description:
  2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily.


ensembl_gene_id: azo3163
symbol: azo3163
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to bb2106 of B. bronchispetica of 55% (trembl|Q7WKK0(SRS)). No domains predicted. signal peptide. 2 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo3164
symbol: wrbA2
gene_biotype: protein_coding
description:
  Probable tryptophan repressor binding protein (flavodoxin); Flavoprotein wrbA. TREMBL:Q8XZ48:63% identity, 73% similarity; Q7NZW0: 61%, 72% WrbA, related to and slightly larger than flavodoxin. In Escherichia coli, this protein is produced during stationary phase, binds to the trp repressor, and makes trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Three copies are found in Sinorhizobium meliloti InterPro: IPR008254; Flav_nitox_synth. IPR001226; Flavodoxin. Pfam PF00258: flavodoxin Absence of signal peptide (Signal P predicted) and Transmem [...]


ensembl_gene_id: azo3165
symbol: azo3165
gene_biotype: protein_coding
description:
  Exoribonuclease II; Putative membrane protein(Ribonuclease BN)36% identity to TrEMBL; Q7NZV9.TrEMBL;Q8XZ47(27% identity). Has PF03631, Ribonuclease BN-like family;IPR004664,RNase_BN;This family contains integral membrane proteins with 5 to 6 predicted transmembrane spans. The family include ribonuclease BN that is involved in tRNA maturation P32146. This family of proteins does not seem to contain any completely conserved polar residues that would be expected in a nuclease enzyme, suggesting that many members of this family may not have this catalytic activity; High confidence in funct [...]


ensembl_gene_id: azo3166
symbol: azo3166
gene_biotype: protein_coding
description:
  Hypothetical Protein,20% identity to TrEMBL;Q9HUK7. Very Bad homology with the hits in the DB over entire length of protein. No substantial good hits available. No signal peptide or TMH reported present.


ensembl_gene_id: azo3167
symbol: rplU
gene_biotype: protein_coding
description:
  50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.


ensembl_gene_id: azo3168
symbol: rpmA
gene_biotype: protein_coding
description:
  50S ribosomal protein L27; High confidence in function and specificity; Belongs to the bacterial ribosomal protein bL27 family.


ensembl_gene_id: azo3169
symbol: obg
gene_biotype: protein_coding
description:
  Probable GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.


ensembl_gene_id: azo3170
symbol: proB
gene_biotype: protein_coding
description:
  Prob protein; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.


ensembl_gene_id: azo3171
symbol: azo3171
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to ne2236 of N. europaea of 58% (trembl:Q82SS1). No domains predicted. No signal peptide. No TMHs.


ensembl_gene_id: azo3172
symbol: azo3172
gene_biotype: protein_coding
description:
  Putative long chain fatty acid coA ligase; It belongs to the ATP-dependent AMP-binding enzyme family. Entry name Q9X7Y5 Primary accession number Q9X7Y5 Identities = 193/609 (31%) InterPro IPR000873; AMP-bind. Pfam PF00501; AMP-binding; 2 Signal peptide probability: 0.006 Number of predicted TMHs: 0; Family membership.


ensembl_gene_id: azo3173
symbol: galE1
gene_biotype: protein_coding
description:
  UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase) (UDP- galactose 4-epimerase). PLAYS AN ESSENTIAL ROLE IN THE INCORPORATION OF GALACTOSE INTO MENINGOCOCCAL LIPOPOLYSACCHARIDE SURFACE MOLECULES WHICH ARE IMPORTANT FOR PATHOGENESIS. hemL: glutamate-1-semialdehyde-21-amin; High confidence in function and specificity.


ensembl_gene_id: azo3174
symbol: azo3174
gene_biotype: protein_coding
description:
  Putative methyltransferase; InterPro (IPR000051): SAM (and some other nucleotide) binding motif. InterPro (IPR001601): Generic methyltransferase. Pfam (PF01209): ubiE/COQ5 methyltransferase family; Function unclear.


ensembl_gene_id: azo3175
symbol: azo3175
gene_biotype: protein_coding
description:
  Hypothetical secreted protein. No homology to the data bank. No domains predicted. Signal Peptide present. No TMH present.


ensembl_gene_id: azo3176
symbol: azo3176
gene_biotype: protein_coding
description:
  Permease component of an ABC-transporter system; Region start changed from 3485680 to 3485581 (99 bases).


ensembl_gene_id: azo3177
symbol: lolE3
gene_biotype: protein_coding
description:
  Permease component of an ABC transporter system; Part of a lipoprotein translocation system (translocates lipoproteins from the inner membrane to periplasmic chaperone, LolA, which transfers the lipoproteins to an outer membrane receptor, LolB, which anchors the lipoprotein to the outer membrane of the Gram-negative bacterial cell envelope); Specificity unclear.


ensembl_gene_id: azo3179
symbol: prpE
gene_biotype: protein_coding
description:
  Probable propionyl-CoA synthetase; Catalysis the synthesis of propionyl-CoA from propionate and CoA. Also converts acetate to acetyl-CoA but with a lower specific activity (By similarity). Catalysis of the reaction:- ATP + propanoate + CoA = AMP + diphosphate + propanoyl-CoA Entry name SWISSPROT:PRPE_SALTY InterPro IPR000873; AMP-bind. Pfam PF00501; AMP-binding; 1. Identities = 372/627 (59%) Number of predicted TMHs: 1; High confidence in function and specificity.


ensembl_gene_id: azo3182
symbol: azo3182
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to Daro03003801 of Dechloromonas aromatica of 44% (gi|41722610|ref|ZP_00149605.1|(NBCI ENTREZ)). No domains predicted. No signal peptide. No TMHs.


ensembl_gene_id: azo3183
symbol: lemA2
gene_biotype: protein_coding
description:
  Conserved hypothetical lemA family protein; Putative cytoplasmic membrane protein, lemA, 41% identity(63% similarity) to TrEMBL;Q9FA50.TrEMBL;Q7CNK7(37% identity). Has PF04011,LemA family;IPR007156;The members of this family are related to the LemA protein P71452. LemA contains an amino terminal predicted transmembrane helix. It has been predicted that the small amino terminus is extracellular. The exact molecular function of this protein is uncertain; Conserved hypothetical protein.


ensembl_gene_id: azo3184
symbol: azo3184
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to NE0281 of Nitrosomonas europaea of 34% (trembl|Q82XI9(SRS)). No domains predicted. no signal peptide. 2 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo3185
symbol: abcZ
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein uup-1. InterPro: AAA ATPase superfamily Presence of SMC domain at N-terminal. Occurence of HypB/UreG nucleotide binding domain. FERM and yrdC domains are also present. Presence of uncharacterized P-loop hydralase domain. Presence of signal peptide and transmembrane helices. 61% identity and 76% similarity to Chromobacterium ABC transporter; Family membership.


ensembl_gene_id: azo3187
symbol: azo3187
gene_biotype: protein_coding
description:
  Conserved hypothetical serine protease. Homology to mucD of N. europaea of 50% (trembl|Q82XA8). InterPro: Serine proteases trypsin family (IPR001254); Chymotrypsin serin protease family (S1) (IPR001314). Pfam: Trypsin. signal peptide. no TMHs; Family membership.


ensembl_gene_id: azo3188
symbol: azo3188
gene_biotype: protein_coding
description:
  Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) (Slt70). Murein-degrading enzyme. Catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N- acetylglucosamine residues in peptidoglycan. May play a role in recycling of muropeptides during cell elongation and/or cell division (By similarity). InterPro: SLT domain; Family membership.


ensembl_gene_id: azo3189
symbol: azo3189
gene_biotype: protein_coding
description:
  NDPsugar dehydrogenase; CapL protein. Required for the biosynthesis of type 1 capsular polysaccharide. InterPro: UDP-glucose/GDP-mannose dehydrogenase family gutA: pts system glucitol/sorbitol-s; Specificity unclear.


ensembl_gene_id: azo3193
symbol: azo3193
gene_biotype: protein_coding
description:
  Glycosyltransferase; Might transfer a sugar moiety directly to a lipd acceptor. Putative colanic biosynthesis UDP-glucose lipid carrier transferase. InterPro: Bacterial sugar transferase; Family membership.


ensembl_gene_id: azo3195
symbol: azo3195
gene_biotype: protein_coding
description:
  Hypothetical protein. No known Domains/Features/Signal Peptide or TMH present. Weak Homology with hits in the database.


ensembl_gene_id: azo3197
symbol: thyA
gene_biotype: protein_coding
description:
  Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis.


ensembl_gene_id: azo3198
symbol: folA
gene_biotype: protein_coding
description:
  FolA protein; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.


ensembl_gene_id: azo3199
symbol: adiA
gene_biotype: protein_coding
description:
  Putative orn/arg/lys decarboxylase. Homology to adiA of E. coli of 37% (sprot|ADIA_ECOLI). This family is composed of ornithine decarboxylases (ODC), arginine decarboxylases (ADC) and lysine decarboxylases (LDC), and belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase domain superfamily (fold I). These enzymes catalyse the decarboxylation of ornithine,arginine, or lysine, respectively using PLP as a co-factor. Pfam: Orn/Lys/Arg decarboxylase no signal peptide no TMHs; Specificity unclear.


ensembl_gene_id: azo3201
symbol: azo3201
gene_biotype: protein_coding
description:
  Putative iron sulfur binding protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.


ensembl_gene_id: azo3202
symbol: azo3202
gene_biotype: protein_coding
description:
  Lipoprotein attached to the membrane by a lipid anchor; Belongs to the ompa family. InterPro: Bacterial outer membrane protein; Function unclear.


ensembl_gene_id: azo3203
symbol: metG
gene_biotype: protein_coding
description:
  MetG protein; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.


ensembl_gene_id: azo3204
symbol: sulP2
gene_biotype: protein_coding
description:
  Putative sulfate transporter; Sulfate permease, SulP. Permease member of the MFS superfamily, involved in the transport of sulfate. Putative sulfate transporter ychM. InterPro: IPR002645; STAS. IPR001902; Sulph_transpt. Pfam: PF01740; STAS; 1. PF00916; Sulfate_transp; 1. SignalP: present; High confidence in function and specificity.


ensembl_gene_id: azo3205
symbol: acyP
gene_biotype: protein_coding
description:
  Conserved hypothetical acylphosphatase. Homology to pf0283 of P. furiosus of 56% (trembl|Q8U414). Acylphosphatase specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates, its substrates including 1,3-diphosphoglycerate and carbamyl phosphate. Although its physiological role is as yet unknown it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis. InterPro: Acylphosphatase (IPR001792). Pfam: Acylphosphatase. no signal peptide. no TMHs; Function unclear.


ensembl_gene_id: azo3207
symbol: azo3207
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to PA1688 of Pseudomonas aeruginosa of 54% (trembl|Q9X6R1(SRS)). No domains predicted. Signal p reporting signal peptide present. NO TMH present; Conserved hypothetical protein.


ensembl_gene_id: azo3208
symbol: dnaE1
gene_biotype: protein_coding
description:
  DNA-directed DNA polymerase; DNA polymerase III alpha subunit. DNA POLYMERASE III IS A COMPLEX MULTICHAIN ENZYME RESPONSIBLE FOR MOST OF THE REPLICATIVE SYNTHESIS IN BACTERIA. THIS DNA POLYMERASE ALSO EXHIBITS 3 TO 5 EXONUCLEASE ACTIVITY. THE ALPHA CHAIN IS THE DNA POLYMERASE (BY SIMILARITY). InterPro: DNA polymerase III alpha subunit TIGRFAM: polc: DNA polymerase III alpha subunit; High confidence in function and specificity.


ensembl_gene_id: azo3209
symbol: qor
gene_biotype: protein_coding
description:
  NADPH:quinone reductase; TREMBL:Q8XXD1: 69% identity, 76% similarity. Quinone oxidoreductase (EC 1.6.5.5). qor, RSc2184; probable NADPH:quinone reductase, zeta-crystallin homolog oxidoreductase protein [EC:1.6.5.5] InterPro: Zinc-containing alcohol dehydrogenase superfamily InterPro:IPR002085; Adh_zn_family. IPR002364:QOR_zeta_crystal. Pfam:PF00107; ADH_zinc_N; 1 tdh: L-threonine 3-dehydrogenase; High confidence in function and specificity.


ensembl_gene_id: azo3210
symbol: azo3210
gene_biotype: protein_coding
description:
  Exported protein similar to outer membrane phospholipases; Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities. Belongs to the phospholipase A1 family.


ensembl_gene_id: azo3211
symbol: maeB2
gene_biotype: protein_coding
description:
  Probable malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+). Homology to dme of S. meliloti of 61% (sprot|MAO1_RHIME). Required for symbiotic nitrogen fixation. Plays a key role in the conversion of malate to acetyl-CoA for efficient tricarboxylic acid cycle function in nitrogen-fixating bacteria. InterPro: Phosphate acetyl/butaryl transferase (IPR002505); Malic enzyme (IPR001891) Pfam: Malic enzyme; Phosphate acetyl/butaryl transferase Tigrfam: pta: phosphotransacetylase no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo3212
symbol: parA3
gene_biotype: protein_coding
description:
  ParA family protein; Sporulation initiation inhibitor protein soj. INHIBITS THE INITIATION OF SPORULATION SPO0J ANTAGONIZES THIS INHIBITION. SOJ ULTIMATELY INHIBITS THE ACTIVATION (PHOSPHORYLATION) OF SPO0A. IT IS NOT REQUIRED FOR CHROMOSOME PARTITIONING. InterPro: ParA family ATPase; Function unclear.


ensembl_gene_id: azo3213
symbol: uvrD
gene_biotype: protein_coding
description:
  DNA helicase II (EC 3.6.1.-). HAS BOTH ATPASE AND HELICASE ACTIVITIES. UNWINDS DNA DUPLEXES WITH 3 TO 5 POLARITY WITH RESPECT TO THE BOUND STRAND AND INITIATES UNWINDING MOST EFFECTIVELY WHEN A SINGLE-STRANDED REGION IS PRESENT. INVOLVED IN THE POSTINCISION EVENTS OF NUCLEOTIDE EXCISION REPAIR AND METHYL-DIRECTED MISMATCH REPAIR. InterPro: UvrD/REP helicase; High confidence in function and specificity.


ensembl_gene_id: azo3214
symbol: azo3214
gene_biotype: protein_coding
description:
  Conserved hypothetical. Homology to Daro03003519 of Dechloromonas aromatica of 32% (gi|41722969|ref|ZP_00149935.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. no TMHs.


ensembl_gene_id: azo3215
symbol: leuS
gene_biotype: protein_coding
description:
  Leucine--tRNA ligase; Unnamed protein product; Region start changed from 3544790 to 3544922 (-132 bases); Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: azo3216
symbol: rlpB
gene_biotype: protein_coding
description:
  Putative lipoprotein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family.


ensembl_gene_id: azo3217
symbol: holA
gene_biotype: protein_coding
description:
  DNA polymerase III delta subunit. DNA polymerase III is a complex multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3 to 5 exonuclease activity. The delta subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; High confidence in function and specificity.


ensembl_gene_id: azo3218
symbol: proA
gene_biotype: protein_coding
description:
  ProA protein; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.


ensembl_gene_id: azo3219
symbol: xerD
gene_biotype: protein_coding
description:
  Integrase/recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: azo3220
symbol: ybaK
gene_biotype: protein_coding
description:
  Putative DNA-dependent transcriptional regulator,YbaK.68% identity (75% similarity) to TrEMBL;Q748B9. TrEMBL; Q8FK79(29% identity to E.coli,ybaK).SwissProt;P37175 Has PF04073, YbaK / prolyl-tRNA synthetases associated domain;IPR007214; This domain of unknown function is found in numerous prokaryote organisms. The structure of YbaK shows a novel fold. This domain also occurs in a number of prolyl-tRNA synthetases (proRS) from prokaryotes. Thus, the domain is thought to be involved in oligo-nucleotide binding, with possible roles in recognition/discrimination or editing of prolyl-tRNA. T [...]


ensembl_gene_id: azo3221
symbol: hvrA2
gene_biotype: protein_coding
description:
  Putative trans-acting regulatory protein HvrA. Homology to hvrA of R. capsulatus of 28% (sprot|HVRA_RHOCA) IT IS A DIM-LIGHT TRANS-ACTING ACTIVATOR OF PUF AND PUH EXPRESSION BUT HAS NO EFFECT ON THE EXPRESSION OF THE PUC OPERON. IT IS RESPONSIBLE FOR REGULATING LIGHT-HARVESTING-I AND REACTION CENTER STRUCTURAL GENE EXPRESSION DIFFERENTIALLY FROM THAT OF LIGHT-HARVESTING-II EXPRESSION IN RESPONSE TO ALTERATIONS IN LIGHT. PROPER LIGHT REGULATION OF LIGHT-HARVESTING AND REACTION CENTER POLYPEPTIDE SYNTHESIS IS INDEED AN IMPORTANT PHYSIOLOGICAL TRAIT THAT ENABLES CELLS TO ADAPT TO EVER-CHA [...]


ensembl_gene_id: azo3222
symbol: folB
gene_biotype: protein_coding
description:
  FolB protein; Dihydroneopterin aldolase (DHNA). CATALYZES THE CONVERSION OF 78-DIHYDRONEOPTERIN TO 6-HYDROXYMETHYL-78-DIHYDROPTERIN. InterPro: Dihydroneopterin aldolase TIGRFAM: folB_dom: FolB domain; High confidence in function and specificity.


ensembl_gene_id: azo3223
symbol: plsY
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.


ensembl_gene_id: azo3224
symbol: gcp
gene_biotype: protein_coding
description:
  Probable O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.


ensembl_gene_id: azo3225
symbol: rpsU
gene_biotype: protein_coding
description:
  30S ribosomal protein S21; Function unclear; Belongs to the bacterial ribosomal protein bS21 family.


ensembl_gene_id: azo3226
symbol: dnaG
gene_biotype: protein_coding
description:
  DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.


ensembl_gene_id: azo3227
symbol: rpoD
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.


ensembl_gene_id: azo3228
symbol: gloA2
gene_biotype: protein_coding
description:
  Lactoylglutathione lyase; Glyoxalase I catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid. Similar to trembl|Q9HY85 (74%) and to sprot|LGUL_NEIMA (70%). Pfam (PF00903): Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ProDom (PD002334): Glyoxalase I; High confidence in function and specificity.


ensembl_gene_id: azo3229
symbol: azo3229
gene_biotype: protein_coding
description:
  Putative hydrolase; Probable Hydrogenase expression/formation protein hupH. SIMILARITY:Belongs to the hupH/hyaF family SPROT:P48340: 37% identity, 54% similarity InterPro: IPR002725; DUF45. Pfam: PF01863; DUF45 Nonsecretory protein (Signal P predicted) No transmembrane helices (TMHMM predicted); High confidence in function and specificity.


ensembl_gene_id: azo3230
symbol: azo3230
gene_biotype: protein_coding
description:
  Probable Hypothetical protein Ta0487. trembl:Q7W4W1:50% identity, 62% similarity InterPro:IPR001453; MoCF_biosynth. Pfam: PF00994; MoCF_biosynth; 1. Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon molyb_syn: molybdenum cofactor synthe No signal peptide. No transmembrane helices; Function unclear.


ensembl_gene_id: azo3231
symbol: azo3231
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to ebA4352 of Azoarcus sp. EbN1 of 31% (gnl|keqq|eba:ebA4352(KEGG)). Has PF04401, Protein of unknown function (DUF540); IPR007496 DUF540; Uncharacterised bacterial integral membrane protein,possibly involved in cysteine biosynthesis. Speculated to be involved in sulphate transport. no signal peptide. 6 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo3232
symbol: ffh
gene_biotype: protein_coding
description:
  Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...]


ensembl_gene_id: azo3233
symbol: azo3233
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to ne1459 of N. europaea of 49% (trembl|Q82UM4). Pfam: Cytochrome C assembly protein. no signal peptide. 8 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo3234
symbol: pilB2
gene_biotype: protein_coding
description:
  Pilus assembly protein PilB is a component of the pilus biogenesis apparatus,; High confidence in function and specificity.


ensembl_gene_id: azo3235
symbol: pilC
gene_biotype: protein_coding
description:
  Type 4 pilus biogenesis protein; Pilus assembly protein PilC is a component of the pilus biogenesis apparatus, similarity to pir|B35384 (50%). This apparatus is responsible for the stabilization, translocation and assembly of the monomeric pilin subunits into the pilus organelle. InterPro (IPR001992): Bacterial type II secretion system protein. InterPro (IPR003004): Bacterial general secretion pathway protein F Pfam (PF00482): Bacterial type II secretion system protein TMHMM reporting three TMH; High confidence in function and specificity.


ensembl_gene_id: azo3236
symbol: pilD
gene_biotype: protein_coding
description:
  Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.


ensembl_gene_id: azo3237
symbol: azo3237
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to BB0113 of B.bronchiseptica of 56% (trembl:Q7WR44). No domas predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo3238
symbol: azo3238
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein, 57% identity to TrEMBL;Q7W002. Has PF04367, Protein of unknown function (DUF502);IPR007462; Predicted to be an integral membrane protein. Signal Peptide present. 1 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo3239
symbol: aspS
gene_biotype: protein_coding
description:
  AspS protein; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.


ensembl_gene_id: azo3242
symbol: azo3242
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to XCC2280 of X.campestris of 33% (trembl:Q8P8G2). No domains predicted. No signal Peptide present. No TMH present.


ensembl_gene_id: azo3243
symbol: hsp18
gene_biotype: protein_coding
description:
  Putative small heat shock protein. Homology to hsp18 of C. acetobutylicum of 35% (sprot|HS18_CLOAB) InterPro: Heat shock hsp20 (alpha crystallin) proteins family (IPR002068) Pfam: Hsp20/alpa cystallin family no signal peptide no TMHs; Function unclear.


ensembl_gene_id: azo3244
symbol: argB
gene_biotype: protein_coding
description:
  ArgB protein; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.


ensembl_gene_id: azo3245
symbol: azo3245
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to ebA4328 of Azoarcus sp. EbN1 of 59% (gnl|keqq|eba:ebA4328(KEGG)). no domains predicted. signal peptide. TMH in signal peptide.


ensembl_gene_id: azo3246
symbol: fadD4
gene_biotype: protein_coding
description:
  Long-chain-fatty-acid-CoA ligase; Esterification, concomitant with transport, of exogenous long-chain fatty acids into metabolically active coa thioesters for subsequent degradation or incorporation into phospholipids, TREMBL:Q8UET3 (39% identity); TREMBL:Q988H2 (38% identity). InterPro (IPR000873): AMP-dependent synthetase and ligase Pfam (PF00501): AMP-binding enzyme; High confidence in function and specificity.


ensembl_gene_id: azo3247
symbol: asn
gene_biotype: protein_coding
description:
  Asparagine synthase catalyze the conversion of aspartate to asparagine. Similar to trembl|Q82VG1 (45%) and to trembl|Q7USD1 (27%). Pfam (PF00733): Asparagine synthase; Family membership.


ensembl_gene_id: azo3249
symbol: azo3249
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homolgy to ne2159 of N. europaea of 33% (trembl|Q82SY7). InterPro: TPR repeat (IPR001440). Pfam: TPR domain signal peptide. TMH in signal peptide; Conserved hypothetical protein.


ensembl_gene_id: azo3250
symbol: azo3250
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to ne2161 of N. europaea of 45% (trembl|Q82SY5). Interpro: Esterase/lipase/thioesterase family. no damians predicted. no signal peptide. no TMHs.


ensembl_gene_id: azo3251
symbol: azo3251
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Probable Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase) (Adenylyl cyclase). TREMBL:Q82SY4:40% identity, 57% similarity. InterPro:IPR000379; Ser_estrs Pfam:UPF0007:Uncharacterized protein family UPF000 thiE: thiamine-phosphate pyrophosphorylas No transmembrane helices; Function unclear.


ensembl_gene_id: azo3252
symbol: azo3252
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to ne2163 of N. europaea of 42% (trembl|Q82SY3). Pfam: Poshpopantetheine attachment site. A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. no signal peptide. no TMHS.


ensembl_gene_id: azo3253
symbol: azo3253
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to Mmc102002678 of Magnetococcus sp. MC-1 of 44% (gi|48831833|ref|ZP_00288884.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo3254
symbol: azo3254
gene_biotype: protein_coding
description:
  Hypothetical protein predicted by Glimmer/Critica; May be related to biosynthesos of cell surface carbohydrates / polysaccharides.


ensembl_gene_id: azo3256
symbol: azo3256
gene_biotype: protein_coding
description:
  Conserved hypothetical polysaccharide biosynthesis protein, related to GumJ. Homology to ebA4295 of Azoarcus sp. EbN1 of 42%. Pfam: Polysaccharide biosynthesis protein. Members of this family are integral membrane proteins. Many members of the family are implicated in production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon. The family includes SpoVB from Bacillus subtilis SP5B_BACSU, which is involved in spore cortex biosynthesis. No signal peptide. 10 TMHs; Family membership.


ensembl_gene_id: azo3261
symbol: azo3261
gene_biotype: protein_coding
description:
  Glycosyltransferase; Putative glycosyl transferase ypjH (EC 2.-.-.-). TIGR00022: conserved hypothetical pro; Specificity unclear.


ensembl_gene_id: azo3263
symbol: azo3263
gene_biotype: protein_coding
description:
  Hypothetical secreted protein. No homology to the data bank. No domains predicted. No TMHs. signal peptide present.


ensembl_gene_id: azo3264
symbol: azo3264
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology RB4730 of Rhodopirellula baltica of 36% (trembl|Q7US36). No domains predicted. Signal peptide. No TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo3265
symbol: azo3265
gene_biotype: protein_coding
description:
  Glycosyltransferase; Similar to a gene annotaed to encode a dolichol-phosphate mannosyltransferase, a glycosyltransferase that transfers a suga directly to a lipid carrier. InterPro: Glycosyl transferase family 2; Specificity unclear.


ensembl_gene_id: azo3266
symbol: azo3266
gene_biotype: protein_coding
description:
  Conserved hypothetical polysacchacride deacetylase. Homology to N. europaea of N. europaea of 54% (trembl|Q82W49(SRS)). This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase. It also includes chitin deacetylase from yeast, and endoxylanases which hydrolyses glucosidic bonds in xylan. InterPro:IPR002509; Polysac_deacet. Pfam:PF01522; Polysacc_deac_1; 1. no TMHs no signal peptide; Conserved hypothetical protein.


ensembl_gene_id: azo3267
symbol: azo3267
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to RferDRAFT_3275 of Rhodoferax ferrireducens of 46%. Pfam: O-Antigen Polymerase. This group of bacterial proteins is involved in the synthesis of O-antigen, a lipopolysaccharide found in the outer membrane in gram-negative bacteria. The enzyme is coded for by the gene wzy which is part of the O-antigen gene cluster. No signal peptide. 9 TMHs; Family membership.


ensembl_gene_id: azo3269
symbol: algD
gene_biotype: protein_coding
description:
  [EC:1.1.1.132], UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase) (UDP-GlcDH) (UDPGDH).,UDP-glucose/GDP-mannose dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; High confidence in function and specificity.


ensembl_gene_id: azo3271
symbol: asnB1
gene_biotype: protein_coding
description:
  Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. Similar to trembl|Q7USD1 (35%) and to sprot|ASNB_BACSU (30%). Pfam (PF00310): Glutamine amidotransferase class-II Pfam (PF00733): Asparagine synthase; Specificity unclear.


ensembl_gene_id: azo3273
symbol: asnB2
gene_biotype: protein_coding
description:
  Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. Similar to trembl|Q81ZU7 (64%) and to trembl|Q7USD1 (37%). Pfam (PF00310): Glutamine amidotransferase class-II Pfam (PF00733): Asparagine synthase; Specificity unclear.


ensembl_gene_id: azo3275
symbol: azo3275
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to NE1797 of Nitrosomonas europaea of 33% (trembl|Q82TS7(SRS)). no domains predicted. signal peptide. 7 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo3276
symbol: azo3276
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Possibly related to cell surface polysaccharide biosynthesis, due to the presence of the gene in a polysaccharide synthesis gene cluster; Function unclear.


ensembl_gene_id: azo3277
symbol: azo3277
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; 62% Myb_DNA_binding.IPR002509; Polysac_deacet. Pfam:PF01522; Polysacc_deac_1; 1.


ensembl_gene_id: azo3278
symbol: mnaA
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14) (UDP-GlcNAc-2- epimerase). Catalyzes the reversible epimerization at C-2 of UDP-N- acetylglucosamine (UDP-GlcNAc) and thereby provides bacteria with UDP-N-acetylmannosamine (UDP-ManNAc) the activated donor of ManNAc residues (By similarity). InterPro: UDP-N-acetylglucosamine 2-epimerase; High confidence in function and specificity.


ensembl_gene_id: azo3279
symbol: gspA
gene_biotype: protein_coding
description:
  MSHA biogenesis protein MshM; General secretion pathway protein A. Involved in a general secretion pathway (GSP) for the export of proteins. InterPro: AAA ATPase superfamily POssibly related to the biosynthesis of cell surface polysaccharide due to the presence of the gene in a polysaccharide synthesis gene cluster; High confidence in function and specificity.


ensembl_gene_id: azo3282
symbol: azo3282
gene_biotype: protein_coding
description:
  Conserved hypothetical polysaccharide chain length determinant protein. Homology to ebA4249 of Azoarcus sp. EbN1 of 66%. No signal peptide. 3 TMHS. Pfam: Wzz = Chain length determinant protein. This family includes proteins involved in lipopolysaccharide (lps) biosynthesis. This family comprises the whole length of chain length determinant protein (or wzz protein) that confers a modal distribution of chain length on the O-antigen component of lps. This region is also found as part of bacterial tyrosine kinases such as ETK_ECOLI; Family membership.


ensembl_gene_id: azo3283
symbol: wza
gene_biotype: protein_coding
description:
  Conserved hypothetical polysaccharid export protein. Homology to wza of Azoarcus sp. EbN1 of 80%. Pfam: Polysaccharide biosynthesis/export protein. This is a family of periplasmic proteins involved in polysaccharide biosynthesis and/or export. No TMHs. Signal peptide present., ; Family membership.


ensembl_gene_id: azo3284
symbol: azo3284
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to ne2229 of N. europaea of 38% (trembl|Q82SS7). no domains predicted. no signal peptide. no TMHs.


ensembl_gene_id: azo3285
symbol: azo3285
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to NE2243 of Nitrosomonas europaea of 43% (trembl|Q82SR4(SRS). No domains predicted. Signal peptide present. No TMH reported present; Conserved hypothetical protein.


ensembl_gene_id: azo3286
symbol: azo3286
gene_biotype: protein_coding
description:
  ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs. Similar to TREMBL:Q82SR3 (67% identity); TREMBL:Q92NU9 (48% identity); SWISSPROT:Q58206 (45% identity). InterPro (IPR003439): ABC transporter. InterPro (IPR001687): ATP/GTP-binding site motif A (P-loop). InterPro (IPR00359 [...]


ensembl_gene_id: azo3287
symbol: azo3287
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to NE2245 of Nitrosomonas europaea of 51% (tremble:Q82SR2). No domains predicted. Signal peptide present. No TMH present; Conserved hypothetical protein.


ensembl_gene_id: azo3288
symbol: azo3288
gene_biotype: protein_coding
description:
  Putative exonuclease of the beta-lactamase fold involved in RNA processing, N-terminal fragment; Family membership.


ensembl_gene_id: azo3289
symbol: azo3289
gene_biotype: protein_coding
description:
  Putative exonuclease of the beta-lactamase fold involved in RNA processing, C-terminal fragment; Family membership.


ensembl_gene_id: azo3290
symbol: azo3290
gene_biotype: protein_coding
description:
  Major outer membrane protein P.IB precursor (Protein IB) (PIB) (Porin). Serves as a slightly cation selective porin. InterPro: General diffusion Gram-negative porins L12: ribosomal protein L7/L12; Function unclear.


ensembl_gene_id: azo3291
symbol: azo3291
gene_biotype: protein_coding
description:
  Outer membrane porin protein 32 precursor (OMP32). Forms anion selective channels. InterPro: General diffusion Gram-negative porins 2A0310: amino acid permease (yeast); Function unclear.


ensembl_gene_id: azo3292
symbol: rpoH
gene_biotype: protein_coding
description:
  RNA polymerase sigma-32 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.


ensembl_gene_id: azo3293
symbol: senC
gene_biotype: protein_coding
description:
  SCO1/SenC family protein; SCO2 protein homolog mitochondrial precursor. Acts as a copper chaperone transporting copper to the Cu(A) site on the cytochrome c oxidase subunit II (COX2). InterPro: SCO1/SenC TREMBL:Q8Y2G3: 56% identity, 74% similarity InterPro:IPR003782; SCO1_SenC. Pfam: PF02630; SCO1-SenC dsbE: periplasmic protein thiol:disulf Presence of signal peptide (SignalP predicted) No TMH's present; Family membership.


ensembl_gene_id: azo3294
symbol: coxD
gene_biotype: protein_coding
description:
  Putative protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.


ensembl_gene_id: azo3295
symbol: azo3295
gene_biotype: protein_coding
description:
  Putative Cytochrome aa3 oxidase assembly protein,42% Identity to TrEMBL;Q7P0G1, Q62F60. Has PF02628,Cytochrome oxidase assembly protein; IPR003780,COX15_CtaA; This is a family of integral membrane proteins. CtaA is required for cytochrome aa3 oxidase assembly in Bacillus subtilis. COX15 is required for cytochrome c oxidase assembly in yeast (P40086).


ensembl_gene_id: azo3296
symbol: azo3296
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to RS03338 of Ralstonia solanacearum of 36% (trembl|Q8Y2G6(SRS)). No domains predicted. No signal peptide. 1 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo3297
symbol: azo3297
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to NE1012 of N.europaea of 31% (tremble:Q82VQ4). No domains predicted. Signal peptide present. No TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo3298
symbol: azo3298
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to rs0336 of R. solanacearum of 53% (trembl|Q8Y2G8(SRS)). no domains predicted. signal peptide. 1 TMH; Conserved hypothetical protein.


ensembl_gene_id: azo3299
symbol: coxC
gene_biotype: protein_coding
description:
  Cytochrome c oxidase polypeptide III Subunits I II and III form the functional core of the enzyme complex. InterPro: Cytochrome c oxidase subunit III; High confidence in function and specificity.


ensembl_gene_id: azo3300
symbol: azo3300
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein, 73% similarity to TrEMBL;Q7WE10,Putative membrane protein [BB4828] [Bordetella bronchiseptica(Alcaligenes bronchisepticus). no signal peptide. 1 TMHs.


ensembl_gene_id: azo3301
symbol: coxG
gene_biotype: protein_coding
description:
  CoxG protein; Cytochrome c oxidase assembly protein ctaG. Exerts its effect at some terminal stage of cytochrome c oxidase synthesis probably by being involved in the insertion of the copper B into subunit I (By similarity); High confidence in function and specificity.


ensembl_gene_id: azo3302
symbol: azo3302
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to rsc0364 of R. solanacearum of 42% (trembl|Q8Y2H2) no domains predicted no signal peptide 1 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo3303
symbol: coxA
gene_biotype: protein_coding
description:
  Probable cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.


ensembl_gene_id: azo3304
symbol: coxB
gene_biotype: protein_coding
description:
  Conserved hypothetical cytochrome c oxidase,subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).


ensembl_gene_id: azo3305
symbol: waaE1
gene_biotype: protein_coding
description:
  ADP-heptose synthase; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose.


ensembl_gene_id: azo3306
symbol: azo3306
gene_biotype: protein_coding
description:
  Conserved hypothetical Na+-dependent phosphate transporter protein. Homolg to Bacteroides thetaiotaomicron. TREMBL:Q8A4R9 InterPro:IPR003841; Na/Pi_cotranspt.IPR004633; NaPi_cotransptII. Pfam:PF02690; Na_Pi_cotrans; 1. SignalP: present TMhelix:8 present. InterPro: Na+/Pi-cotransporter NaPi_cotrn_rel: Na/Pi cotransporter II Hypothetical protein yjbB; Specificity unclear.


ensembl_gene_id: azo3307
symbol: cat1
gene_biotype: protein_coding
description:
  Probable coenzyme A transferase. Homology to cat1 of C. kluyveri of 51% (sprot|CAT1_CLOKL). Pfam: Acetyl-CoA hydrolase/transferase no signal peptide no TMHs tal_mycobact: transaldolase; Family membership.


ensembl_gene_id: azo3308
symbol: azo3308
gene_biotype: protein_coding
description:
  Putative MerR-family transcriptional regulator. InterPro: IPR000551 HTH_MerR. HTH reporting nucleic acid binding motif. h_aconitase: homoaconitase.


ensembl_gene_id: azo3309
symbol: azo3309
gene_biotype: protein_coding
description:
  Conserved hypothetical amine oxidoreductase. Homology to atu1977 of A. tumefaciens of 47% (trembl|Q8UDY9). Pfam: Flavine containing amine oxidoreductase no signal peptide 1 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo3310
symbol: azo3310
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to CV3225 of C.violaceum of 50% (trembl:Q7NPR5). Has PF07103,Protein of unknown function (DUF1365);IPR010775; This family consists of several bacterial and plant proteins of around 250 residues in length. The function of this family is unknown. No signal peptide or TMH present.


ensembl_gene_id: azo3311
symbol: cfaA
gene_biotype: protein_coding
description:
  Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79) (Cyclopropane fatty acid synthase) (CFA synthase). InterPro: Cyclopropane-fatty-acyl-phospholipid synthase; High confidence in function and specificity.


ensembl_gene_id: azo3312
symbol: azo3312
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to PP2729 of P.putida of 36% (tremble:Q88JC0). No domains predicted. Signal peptide present. NO TMH reported present; Conserved hypothetical protein.


ensembl_gene_id: azo3313
symbol: azo3313
gene_biotype: protein_coding
description:
  Putative symporter protein; Integral membrane protein.Belongs to the Na/galactoside symporter family. 20% MFS.IPR001927; Na/Gal_symport. TIGRFAMs:TIGR00792; gph; 1. TMHelix:12; Function unclear.


ensembl_gene_id: azo3314
symbol: azo3314
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to PP2730 of P.putida of 48% (tremble:Q88JB9). No domains predicted. Signal peptide present. No TMH present; Conserved hypothetical protein.


ensembl_gene_id: azo3315
symbol: azo3315
gene_biotype: protein_coding
description:
  The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases,TREMBL:Q92PV6 (39 % identity); TREMBL:Q88JB2 (33% identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase; Specificity unclear.


ensembl_gene_id: azo3316
symbol: azo3316
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to CV3228 of C.violaceum of 40% (trembl:Q7NT36). No domains predicted. No Signal peptide present. No TMH reported present.


ensembl_gene_id: azo3317
symbol: yhdH
gene_biotype: protein_coding
description:
  TREMBL:Q881C6:69% identity; 83% similarity. Alcohol dehydrogenase (EC: 1.1.1.1) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD: Ethanol + NAD = Acetaldehyde + NADH Protein yhdH. InterPro:IPR002085; Adh_zn_family. Pfam:PF00107; ADH_zinc_N; FAD binding domain InterPro: Zinc-containing alcohol dehydrogenase superfamily TIGRFAM:tdh: L-threonine 3-dehydrogenase; High confidence in function and specificity.


ensembl_gene_id: azo3318
symbol: recQ
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase recQ (EC 3.6.1.-). INVOLVED IN THE RECF RECOMBINATION PATHWAY; ITS GENE EXPRESSION IS UNDER THE REGULATION OF THE SOS SYSTEM. IT IS A DNA HELICASE. recq: ATP-dependent DNA helicase RecQ; High confidence in function and specificity.


ensembl_gene_id: azo3319
symbol: fkbP
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase. Homology to fkbP of N. meningitidis of 69% (sprot|FKBP_NEIMB) PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. InterPro: FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase)(IPR001179) Pfam: FKBP-type peptidyl-prolyl cis-trans isomerase no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo3320
symbol: msrA
gene_biotype: protein_coding
description:
  Putative peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.


ensembl_gene_id: azo3321
symbol: azo3321
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to rsc2383 of R. solanacearum of 31% (trembl|Q8XWT7(SRS)). no domains predicted .no signal peptide. 1 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo3322
symbol: trpC
gene_biotype: protein_coding
description:
  Indole-3-glycerol phosphate synthase (IGPS). catalytic activity:1-(2-carboxyphenylamino)-1-deoxy-d-ribulose 5-phosphate = 1-(indol-3-yl)glycerol 3-phosphate + co(2) + h(2)o. pathway: tryptophan biosynthesis; fourth step. InterPro: Indole-3-glycerol phosphate synthase; High confidence in function and specificity; Belongs to the TrpC family.


ensembl_gene_id: azo3323
symbol: trpD
gene_biotype: protein_coding
description:
  1,4-alpha-glucan branching enzyme; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).


ensembl_gene_id: azo3324
symbol: trpG
gene_biotype: protein_coding
description:
  Anthranilate synthase component II (Glutamine amido-transferase). catalytic activity: chorismate + l-glutamine = anthranilate + pyruvate + l-glutamate. pathway: tryptophan biosynthesis; first step. TIGRFAM: trpG_papA: glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase; High confidence in function and specificity.


ensembl_gene_id: azo3325
symbol: trpE
gene_biotype: protein_coding
description:
  Anthranilate synthase; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia.


ensembl_gene_id: azo3326
symbol: cbbZ
gene_biotype: protein_coding
description:
  Probable phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.


ensembl_gene_id: azo3327
symbol: rpe
gene_biotype: protein_coding
description:
  Ribulose-phosphate 3-epimerase(also known as pentose-5-phosphate 3-epimerase, PPE or Rpe), is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. 71%Ribul_P_3_epim. Pfam:PF00834; Ribul_P_3_epim; 1. TIGRFAMs:TIGR01163; rpe; 1; High confidence in function and specificity.


ensembl_gene_id: azo3329
symbol: azo3329
gene_biotype: protein_coding
description:
  Putative 3',5'-cyclic-nucleotide phosphodiesterase; Probable 35-cyclic-nucleotide phosphodiesterase precursor (EC 3.1.4.17) (PDEase) (3:5-CNP). TREMBL:Q8ZD92:28% identity, 47% similarity InterPro; IPR001279; Blactmase-like. IPR000396; Pdiesterase2. Pfam: PF00753; Lactamase_B No transmembrane helices TIGR00010: deoxyribonuclease TatD fami; Function unclear.


ensembl_gene_id: azo3330
symbol: azo3330
gene_biotype: protein_coding
description:
  FHA-domain containing protein; Conserved hypothetical protein which may be involved into signal transduction processes. Important Domain: Pfam:PF00498 FHA domain. The forkhead-associated (FHA) domain is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors,RNA-binding proteins and metabolic enzymes.


ensembl_gene_id: azo3332
symbol: sucD
gene_biotype: protein_coding
description:
  Probable succinyl-CoA synthetase, alpha chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.


ensembl_gene_id: azo3333
symbol: sucC
gene_biotype: protein_coding
description:
  Probable succinyl-CoA synthetase, beta chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.


ensembl_gene_id: azo3334
symbol: azo3334
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to BP2542 of B.pertussis of 50% (trembl:Q7VVU4). No domains predicted. No signal peptide. No TMHs.


ensembl_gene_id: azo3335
symbol: fimV2
gene_biotype: protein_coding
description:
  Putative type 4 pilus biogenesis; In Pseudomonas aeruginosa, FimV is probable involved in remodelling of the peptidoglycan layer to enable assembly of the type IV fimbrial structure and machinery. And it is also required for twitching motility. Similar to trembl|O87015 (26%). Pfam (PF05489): Phage Tail Protein X SignalP reporting Signal peptide; Function unclear.


ensembl_gene_id: azo3336
symbol: azo3336
gene_biotype: protein_coding
description:
  Conserved hypothetical protein,ybgI, 48% identity(67% similarity) to SwissProt;P75743(E.coli)SP|Q8XFW7. SwissProt;Q8XVA0(58% identity)Ralstonia solanacearum. TrEMBL;Q82UH6(53% identity)Nitrosomonas europaea. Has PF01784, NIF3 (NGG1p interacting factor 3);IPR002678, DUF34; This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown.


ensembl_gene_id: azo3337
symbol: algW
gene_biotype: protein_coding
description:
  Probable serine protease AlgW. Homology to algW of P. aeruginosa of 48% (trembl|Q51374). InterPro: Serine proteases trypsin family (IPR001254); PDZ domain (Also known as DHR or GLGF) (IPR001478); HtrA/DegQ protease family (IPR001940) Pfam: PDZ domain (Also known as DHR or GLGF); Trypsin no signal peptide 1 TMH; High confidence in function and specificity; Belongs to the peptidase S1C family.


ensembl_gene_id: azo3338
symbol: tatC
gene_biotype: protein_coding
description:
  Probable Sec-independent protein translocase protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.


ensembl_gene_id: azo3339
symbol: tatB
gene_biotype: protein_coding
description:
  Putative Sec-independent protein translocase protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.


ensembl_gene_id: azo3340
symbol: tatA
gene_biotype: protein_coding
description:
  Propable Sec-independent protein translocase protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.


ensembl_gene_id: azo3342
symbol: hisE
gene_biotype: protein_coding
description:
  Phosphoribosyl-ATP pyrophosphatase, catalyzes the second step in the histidine biosynthetic pathway: 5-phosphoribosyl-ATP + H2O = 5-phosphoribosyl-AMP + PPi Similar to sprot|HIS2_PSEAE (51%) and to sprot|HIS2_AZOBR (43%). Pfam: PRA-PH, Phosphoribosyl-ATP pyrophosphohydrolase; High confidence in function and specificity.


ensembl_gene_id: azo3344
symbol: hisF
gene_biotype: protein_coding
description:
  Imidazole glycerol phosphate synthase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.


ensembl_gene_id: azo3345
symbol: hisA
gene_biotype: protein_coding
description:
  Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, HisA. Similar to sprot|HIS4_RALSO (76%) and to sprot|HIS4_AZOBR (52%). Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, involved in the fourth step of histidine biosynthesis. TIGRFAM (TIGR00007): phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase Pfam: Histidine biosynthesis [...]


ensembl_gene_id: azo3346
symbol: hisH
gene_biotype: protein_coding
description:
  Histidine amidotransferase; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.


ensembl_gene_id: azo3347
symbol: hisB
gene_biotype: protein_coding
description:
  HisB protein; Imidazoleglycerol-phosphate dehydratase is the enzyme that catalyzes the seventh step in the biosynthesis of histidine in bacteria, fungi and plants. Similar to sprot|HIS7_RALSO (73%) and to sprot|HI7B_ARATH (54%)and to sprot|HIS7_ECOLI (47%). Pfam: IGPD, Imidazoleglycerol-phosphate dehydratase; Specificity unclear.


ensembl_gene_id: azo3348
symbol: hisC2
gene_biotype: protein_coding
description:
  Histidinol-phosphate aminotransferase, hisC. Similar to sprot|HIS8_PSESM (64%). Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped into class I and class II. InterPro (PF00155): Aminotransferase class I and II; High confidence in function and specificity.


ensembl_gene_id: azo3350
symbol: ampD2
gene_biotype: protein_coding
description:
  N-acetyl-anhydromuramyl-L-alanine amidase; Putative signaling protein in beta-lactamase regulation. AMPD seems not to act as a direct sensor for beta-lactams. It hydrolyzes 16-anhydro-N-acetylmuramoyl-L-alanyl-D-3glutamyl-meso- diaminopimelic acid to the tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate (By similarity), TREMBL:Q8KRJ4 (63% identity); SWISSPROT:P82974 (60% identity). Pfam (PF01510): N-acetylmuramoyl-L-alanine amidase; High confidence in function and specificity.


ensembl_gene_id: azo3351
symbol: azo3351
gene_biotype: protein_coding
description:
  ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs, TREMBL:O59091 (37% identity); TREMBL:Q7NDM5 (40% identity). Pfam (PF00005): ABC transporter. TC (3.A.1): The ATP-binding Cassette (ABC) Superfamily; High confidence in function and specificity.


ensembl_gene_id: azo3352
symbol: azo3352
gene_biotype: protein_coding
description:
  Similar to hypothetical protein GSU1500 of Geobacter sulfurreducens PCA (16%). TMHMM2 reporting one TMhelix. Sigcleave reporting one SignalPeptide. Coils2 reporting coiled coil region.


ensembl_gene_id: azo3353
symbol: azo3353
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein; In Myxococcus xanthus pilI are co-transcribed with pilH an ABC transporter homologue required for type IV pilus biogenesis and social gliding. pilI appear to be functionally related to pilH. Similar to membrane protein of Geobacter sulfurreducens PCA (14%) and weak; Conserved hypothetical protein.


ensembl_gene_id: azo3354
symbol: pilB
gene_biotype: protein_coding
description:
  Type IV pilus assembly protein; PilB encodes for a 14.2 kDa polypeptide showing similarity to FimF, a component of type I fimbriae of E. coli. It may be part of the pilus assembly complex or the pilus itself. (Reference: Doerr et al., 1998 Molecular Microbiology); Specificity unclear.


ensembl_gene_id: azo3355
symbol: pilA
gene_biotype: protein_coding
description:
  Tfp structural protein; PilA encodes an unusually short (6.4 kDa)putative pilin precursor showing 100% sequence identity to the conserved N-terminus of the Pseudomonas aeruginosa type IV pilin. (Reference: Doerr et al., 1998 Molecular Microbiology); High confidence in function and specificity.


ensembl_gene_id: azo3358
symbol: azo3358
gene_biotype: protein_coding
description:
  Hypothetical membrane protein. No real homology of the entire protein to the data bank. no domains predicted no signal peptide 1TMH.


ensembl_gene_id: azo3359
symbol: ybdL
gene_biotype: protein_coding
description:
  Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes,such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped into subfamilies; these sequences are defined by the aminotransferases class-I pyridoxal-phosphate attachment site signature, which contains the lysine residue involved in pyridoxal-phosphate binding. Similar to trembl|Q8XXV2 (58%) and to sprot|YBDL_ECOLI (52%). Pfam (PF00155): Aminotransferases class-I pyridoxal-phosphate-binding  [...]


ensembl_gene_id: azo3360
symbol: eif
gene_biotype: protein_coding
description:
  Translation initiation factor eIF-2B alpha subunit; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).


ensembl_gene_id: azo3361
symbol: fucA
gene_biotype: protein_coding
description:
  L-fuculose phosphate aldolase(L-fuculose-1-phosphate aldolase). Involved in the fucose metabolism catalyzing the third step of the pathway, L-fuculose 1-phosphate = glycerone phosphate + (S)-lactaldehyde. 41% Aldolase_II_N.IPR004782; FucA. Pfam:PF00596; Aldolase_II; 1. TIGRFAMs:TIGR01086; fucA; 1; High confidence in function and specificity.


ensembl_gene_id: azo3362
symbol: glxR1
gene_biotype: protein_coding
description:
  Putative 2-hydroxy-3-oxopropionate reductase Homology to glxR of E. coli of 39% (SWISSPROT:GLXR_ECOLI) Activity:- (R)-glycerate + NAD(P)(+) = 2-hydroxy-3-oxopropanoate + NAD(P)H. InterPro: 3-hydroyisobutyrate dehydrogenase (IPR002204) Pfam: Nad binding domain of 6-phosphoglucanate dehydrogenase (PF03446) Tigrfam: gnd_rel: 6-phosphoglucante no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo3363
symbol: glxR2
gene_biotype: protein_coding
description:
  Probable 2-hydroxy-3-oxopropionate reductase Homology to glxR of E. coli of 46% (SWISSPROT:GLXR_ECOLI) Activity:- (R)-glycerate + NAD(P)(+) = 2-hydroxy-3-oxopropanoate + NAD(P)H. InterPro: 3-hydroyisobutyrate dehydrogenase (IPR002204) Pfam: Nad binding domain of 6-phosphoglucanate dehydrogenase (PF03446) Tigrfam: gnd_rel: 6-phosphoglucante no signal peptide no TMHs 0; High confidence in function and specificity.


ensembl_gene_id: azo3364
symbol: azo3364
gene_biotype: protein_coding
description:
  The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, EC: 2.4.2.18) and thymidine phosphorylase (EC: 2.4.2.2). All these proteins can transfer a phosphorylated ribose substrate. Similar to sprot|YBIB_ECOLI (40%) and to sprot|TRPD_SULSO (25%). Pfam (PF02885): Glycosyl transferase, family 3; Family membership.


ensembl_gene_id: azo3365
symbol: modD
gene_biotype: protein_coding
description:
  Putative molybdenum transport protein; Putative pyrophosphorylase modD (EC 2.4.2.-). InterPro: Quinolinate phosphoribosyl transferase; Specificity unclear; Belongs to the NadC/ModD family.


ensembl_gene_id: azo3366
symbol: azo3366
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to rpa3088 of R. palustris of 65% (tremblnew|CAE28529). Pfam: Dinitrogenase iron-molybdenum cofactor. no signal peptide. no TMHs.


ensembl_gene_id: azo3367
symbol: azo3367
gene_biotype: protein_coding
description:
  Putative NifZ Protein homolog, shares 45% similarity to SwissProt:P46040, NifZ protein entry. Has PF04319:IPR007415:NifZ domain;This short protein is found in the nif (nitrogen fixation) operon. Its function is unknown but is probably involved in nitrogen fixation or regulating some component of this process. This 75 residue region is presumed to be a domain. It is found in isolation in some members and in the amino terminal half of the longer NifZ proteins. No Signal peptide present. No TMH Present; High confidence in function and specificity.


ensembl_gene_id: azo3368
symbol: fer22
gene_biotype: protein_coding
description:
  Probable ferredoxin 2fe-2s protein. Homology to fer2 of C. pasteruianum of 43% (sprot|FER2_CLOPA). Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo3369
symbol: azo3369
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Pirin-like protein. TREMBL:8Y1Z6: 68% identity, 80% similarity InterPro: DUF209 InterPro:IPR008778; Pirin_C. IPR003829; Pirin_N. Pfam :PF02678; Pirin; 1. PF05726; Pirin_C TIGR00292: thiazole biosynthesis enzyme No signal peptide (Signal P predicted). No transmembrane helices (TMHMM predicted); Specificity unclear; Belongs to the pirin family.


ensembl_gene_id: azo3370
symbol: acpD
gene_biotype: protein_coding
description:
  Probable acyl carrier protein phosphodiesterase; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family.


ensembl_gene_id: azo3371
symbol: ltrA
gene_biotype: protein_coding
description:
  Putative transcriptional regulator, LysR family,; High confidence in function and specificity; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: azo3372
symbol: dsbB
gene_biotype: protein_coding
description:
  Putative disulfide bond formation protein B; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family.


ensembl_gene_id: azo3373
symbol: azo3373
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to cv1788 of C. violaceum of 33% (trembl|Q7NX41). no domains predicted. no signal peptide. no TMHS.


ensembl_gene_id: azo3374
symbol: azo3374
gene_biotype: protein_coding
description:
  Thiosulfate sulfurtransferase; Homolog to the hypothetical protein ygaP from E.coli. SWISSPROT:YGAP_ECOLI InterPro: IPR001763; Rhodanese-like. Pfam: PF00581; Rhodanese; 1. TMhelix:2 present; Function unclear.


ensembl_gene_id: azo3375
symbol: azo3375
gene_biotype: protein_coding
description:
  RND efflux transporter, permease protein; AcrB/AcrD/AcrF family. Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer, TREMBL:Q8KAV4 (43% identity); SWISSPROT:P25197 (23% identity). InterPro (IPR001036): Acriflavin resistance protein. PFam (PF00873): AcrB/AcrD/AcrF family. TIGRFAM (TIGR00914): Heavy metal efflux pump, CzcA family. TIGRFAM (TIGR00915): Hydrophobe/Amphiphile Efflux-1 (HAE1) Family protein. TMHMM  [...]


ensembl_gene_id: azo3376
symbol: azo3376
gene_biotype: protein_coding
description:
  Membrane fusion protein; HlyD family secretion protein. The secretion of a number of proteins/molecules require the help of members belonging to the ABC transporter family and a membrane fusion protein belonging to the HlyD family. SignalP predicting signal peptide. TC (2.A.6.1): The Heavy Metal Efflux (HME) Family; Family membership.


ensembl_gene_id: azo3377
symbol: azo3377
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to Bcep18194_A5800 of Burkholderia sp. 383 of 53%. Pfam: CbiX. The function of CbiX is uncertain, however it is found in cobalamin biosynthesis operons and so may have a related function. Some CbiX proteins contain a striking histidine-rich region at their C-terminus, which suggests that it might be involved in metal chelation. No signal peptide. No TMHs.


ensembl_gene_id: azo3379
symbol: azo3379
gene_biotype: protein_coding
description:
  Hydroxyacylglutathione hydrolase; Probable metallo betalactamase related protein with 47% identity and 65% similarity (TREMBL:Q82SI4). Pfam: Chitin synthetase, SOR/SNZ family, Thiolase N-terminal domain, phosphotyrosine interaction domain. TMHMM predicted transmembrane helix; Function unclear.


ensembl_gene_id: azo3382
symbol: rcp3
gene_biotype: protein_coding
description:
  Putative two-component system regulatory protein,weak similarity to SWISSPROT: sprot|RCP1_SYNY3 (32% Synechocystis sp., response regulator Rcp1) InterPro: IPR001789 Response_reg. Pfam: PF00072 response_reg. SMART: SM00448 REC. Response regulator rcp1. FORMS A TWO-COMPONENT SYSTEM WITH CPH1 IN WHICH IT ACTS AS RECEIVER SUBSTRATE; Family membership.


ensembl_gene_id: azo3383
symbol: cph2
gene_biotype: protein_coding
description:
  Putative two-component system sensor protein, weak similarity to SWISSPROT: sprot|PHY1_SYNY3 (10% Synechocystis sp., Cph1) InterPro: IPR003594 ATPbind_ATPase. IPR004358 Bact_sens_pr_C. IPR003661 His_kinA_N. IPR005467 His_kinase. IPR003660 HAMP. IPR000014 PAS_domain. IPR001610 PAC motif. Pfam: PF00672 HAMP. PF02518 HATPase_c. PF00512 HisKA. PF00989 PAS domain. PF00785 PAC motif SMART: SM00304 HAMP. SM00387 HATPase_c. SM00388 HisKA. SM00091 PAS. SM00086 PAC. TIGRFAM: TIGR00229 PAS domain S-box. Signal P reporting signal peptide. TMHMM reporting 2 transmembrane helices. Phytochrome-like p [...]


ensembl_gene_id: azo3384
symbol: azo3384
gene_biotype: protein_coding
description:
  Putative aliphatic sulfonates binding protein precursor.PART OF A BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM FOR ALIPHATIC SULFONATES. PUTATIVE BINDING PROTEIN. 22% SBP_bac_3. SMART: SM00062; PBPb; 1; Specificity unclear.


ensembl_gene_id: azo3385
symbol: ssb
gene_biotype: protein_coding
description:
  Single-strand DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.


ensembl_gene_id: azo3386
symbol: azo3386
gene_biotype: protein_coding
description:
  Hypothetical transport protein yajR. InterPro: General substrate transporters 2_A_01_02: Multidrug resistance protein; Specificity unclear.


ensembl_gene_id: azo3387
symbol: uvrA2
gene_biotype: protein_coding
description:
  Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.


ensembl_gene_id: azo3389
symbol: galE2
gene_biotype: protein_coding
description:
  UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase) (UDP- galactose 4-epimerase). InterPro: NAD dependent epimerase/dehydratase family; High confidence in function and specificity; Belongs to the NAD(P)-dependent epimerase/dehydratase family.


ensembl_gene_id: azo3391
symbol: rpoA
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: azo3392
symbol: rpsD
gene_biotype: protein_coding
description:
  30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.


ensembl_gene_id: azo3393
symbol: rpsK
gene_biotype: protein_coding
description:
  30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.


ensembl_gene_id: azo3394
symbol: rpsM
gene_biotype: protein_coding
description:
  30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.


ensembl_gene_id: azo3395
symbol: rpmJ
gene_biotype: protein_coding
description:
  Ribosomal protein L36; High confidence in function and specificity; Belongs to the bacterial ribosomal protein bL36 family.


ensembl_gene_id: azo3397
symbol: secY
gene_biotype: protein_coding
description:
  Preprotein translocase SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.


ensembl_gene_id: azo3398
symbol: rplO
gene_biotype: protein_coding
description:
  50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.


ensembl_gene_id: azo3400
symbol: rpsE
gene_biotype: protein_coding
description:
  30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.


ensembl_gene_id: azo3401
symbol: rplR
gene_biotype: protein_coding
description:
  50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.


ensembl_gene_id: azo3402
symbol: rplF
gene_biotype: protein_coding
description:
  50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.


ensembl_gene_id: azo3403
symbol: rpsH
gene_biotype: protein_coding
description:
  30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.


ensembl_gene_id: azo3404
symbol: rpsN
gene_biotype: protein_coding
description:
  30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.


ensembl_gene_id: azo3405
symbol: rplE
gene_biotype: protein_coding
description:
  50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.


ensembl_gene_id: azo3406
symbol: rplX
gene_biotype: protein_coding
description:
  50S ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.


ensembl_gene_id: azo3407
symbol: rplN
gene_biotype: protein_coding
description:
  50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.


ensembl_gene_id: azo3408
symbol: rpsQ
gene_biotype: protein_coding
description:
  30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.


ensembl_gene_id: azo3409
symbol: rpmC
gene_biotype: protein_coding
description:
  50S ribosomal protein L29; Family membership; Belongs to the universal ribosomal protein uL29 family.


ensembl_gene_id: azo3410
symbol: rplP
gene_biotype: protein_coding
description:
  50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.


ensembl_gene_id: azo3411
symbol: rpsC
gene_biotype: protein_coding
description:
  30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.


ensembl_gene_id: azo3412
symbol: rplV
gene_biotype: protein_coding
description:
  50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).


ensembl_gene_id: azo3413
symbol: rpsS
gene_biotype: protein_coding
description:
  30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.


ensembl_gene_id: azo3414
symbol: rplB
gene_biotype: protein_coding
description:
  50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.


ensembl_gene_id: azo3415
symbol: rplW
gene_biotype: protein_coding
description:
  50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.


ensembl_gene_id: azo3416
symbol: rplD
gene_biotype: protein_coding
description:
  50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.


ensembl_gene_id: azo3417
symbol: rplC
gene_biotype: protein_coding
description:
  50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.


ensembl_gene_id: azo3418
symbol: rpsJ
gene_biotype: protein_coding
description:
  30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.


ensembl_gene_id: azo3419
symbol: tufA
gene_biotype: protein_coding
description:
  Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.


ensembl_gene_id: azo3420
symbol: fusA2
gene_biotype: protein_coding
description:
  Elongation factor EF-G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.


ensembl_gene_id: azo3421
symbol: rpsG
gene_biotype: protein_coding
description:
  30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.


ensembl_gene_id: azo3425
symbol: rplL
gene_biotype: protein_coding
description:
  50S ribosomal subunit protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.


ensembl_gene_id: azo3426
symbol: rplJ
gene_biotype: protein_coding
description:
  50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.


ensembl_gene_id: azo3427
symbol: rplA
gene_biotype: protein_coding
description:
  50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.


ensembl_gene_id: azo3428
symbol: rplK
gene_biotype: protein_coding
description:
  50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.


ensembl_gene_id: azo3429
symbol: nusG
gene_biotype: protein_coding
description:
  Putative transcription antitermination protein; Participates in transcription elongation, termination and antitermination.


ensembl_gene_id: azo3430
symbol: secE
gene_biotype: protein_coding
description:
  Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation; Belongs to the SecE/SEC61-gamma family.


ensembl_gene_id: azo3431
symbol: tufB
gene_biotype: protein_coding
description:
  Elongation factor Tu (EF-Tu). This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; High confidence in function and specificity.


ensembl_gene_id: azo3432
symbol: dld
gene_biotype: protein_coding
description:
  D-lactate dehydrogenase. Homology to dld of Mus musculus of 52% (trembl|Q8CIV4) CATALYZE THE STEREOSPECIFIC OXIDATION OF D-LACTATE TO PYRUVATE. InterPro: FAD linked oxidase C-terminal (IPR004113); FAD linked oxidase, N-terminal (IPR006093) Pfam: FAD binding damian; FAD linked oxidases, C-terminal domain Tigrfam: glcD: glycolate oxidase subunit GlcD no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo3433
symbol: azo3433
gene_biotype: protein_coding
description:
  Conserved hypothetical pyruvate ferredoxin/flavodoxin oxidoreductase. Homology to rsc3122 of R. solanacearum (trembl|Q8XUR3). CATALYZES THE FERREDOXIN-DEPENDENT OXIDATIVE DECARBOXYLATION OF ARYLPYRUVATES (BY SIMILARITY). InterPro: Pyruvate ferredoxin/flavodoxin oxidoreductase (IPR002869). Pfam: Pyruvate ferredoxin/flavodoxin oxidoreductase. no singal peptide. no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo3434
symbol: azo3434
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Similar to TREMBL:Q82Y44 (38% identity); TREMBL:Q7NWG1 (37% identity). TMHMM reporting four transmembrane helices. signal peptide; Conserved hypothetical protein.


ensembl_gene_id: azo3435
symbol: azo3435
gene_biotype: protein_coding
description:
  Hypothetical protein predicted by Glimmer/Critica no homology of the entire protein to the data bank Pfam: CobQ/CobB/MinD/ParA nucleotide binding domain no signal peptide no TMHs.


ensembl_gene_id: azo3437
symbol: azo3437
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to ebA3798 of Azoarcus sp. EbN1 of 42% (gnl|keqq|eba:ebA3798(KEGG)). Pfam: DUF534. This is a family of putative secreted proteins of unknown function. signal peptide. no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo3438
symbol: vsrB
gene_biotype: protein_coding
description:
  Putative virulence regulator protein,ATPbind_ATPase. IPR005467; His_kinase. IPR003661; His_kinA_N. IPR003660; HAMP. IPR001789; Response_reg. Pfam: PF02518; HATPase_c. PF00512; HisKA. PF00672; HAMP. PF00072; Response_reg. SMART: SM00387; HATPase_c. SM00388; HisKA. SM00304; HAMP. SM00448; REC. Signal P reporting signal peptide. TMHMM reporting 2 transmembrane helices; Specificity unclear.


ensembl_gene_id: azo3439
symbol: azo3439
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to ebB122 of Azoarcus sp. EbN1 of 65% (gnl|keqq|eba:ebB122(KEGG)). No domains predicted. NO signal peptide present. No TMH present.


ensembl_gene_id: azo3440
symbol: azo3440
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to pa1188 of P. aeruginosa of 40% (trembl|Q9I4F0). InterPro: CAIB/BAIF family (IPR003673). Pfam: CAIB/BAIF family. no signal peptide. no TMHs. TIGR00106: conserved hypothetical protein.


ensembl_gene_id: azo3441
symbol: azo3441
gene_biotype: protein_coding
description:
  Phenylacetate-coenzyme A ligase (Phenylacetyl-CoA ligase) (PA-CoA ligase). CATALYZES THE ACTIVATION OF PHENYLACETIC ACID TO PHENYLACETYL-COA. InterPro: AMP-dependent synthetase and ligase; Function unclear.


ensembl_gene_id: azo3442
symbol: livF
gene_biotype: protein_coding
description:
  ATP-binding cassette (ABC) transporters are multidomain membrane proteins, responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q7WQU7 (73%) and to trembl|Q89HM3 (54%). Pfam (PF00005): ABC transporter Smart (SM00382): AAA ATPase superfamily ProSite (PS50101): ATP/GTP-binding site motif A (P-loop); Specificity unclear.


ensembl_gene_id: azo3443
symbol: azo3443
gene_biotype: protein_coding
description:
  Conserved hypothetical ABC-type branched-chain amino acid transport systems, periplasmic component. Homology to Raeut03002728 of R. eutropha of 58% (gi|45519901|ref|ZP_00171452.1|(NCBI ENTREZ)). Pfam: Receptor family ligand binding region. This family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure. Signal peptide present. TMH in signal peptide; Family membership.


ensembl_gene_id: azo3444
symbol: livM4
gene_biotype: protein_coding
description:
  Putative branched-chain amino acid transport permease. Homology to livM of E. coli of 27%. Part of the binding-protein-dependent transport system for branched-chain amino acids. Probably responsible for the translocation of the substrates across the membrane. Pfam: Branched-chain amino acid transport system no signal peptide probalbe 10 TMHs; Specificity unclear.


ensembl_gene_id: azo3445
symbol: azo3445
gene_biotype: protein_coding
description:
  ABC transporter permease protein; Branched-chain amino acid transport system typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system.The integral inner-membrane proteins translocate the substrate across the membrane. Similar to trembl|Q881A7 (65%) and to sprot|LIVH_ECOLI (26%). Pfam (PF02653): Binding-system dependent bacterial transporters (araH, livH/limM families) TMHMM reporting eight Tmhelix. SignalP re [...]


ensembl_gene_id: azo3446
symbol: azo3446
gene_biotype: protein_coding
description:
  ATP-binding cassette (ABC) transporters are multidomain membrane proteins, responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q881A6 (55%), to sprot|BRAF_PSEAE (34%) and to sprot|LIVG_ECOLI (33%). Pfam (PF00005): ABC transporter Smart (SM00382): AAA ATPase superfamily ProSite (PS50101): ATP/GTP-binding site motif A (P-loop); Specificity unclear.


ensembl_gene_id: azo3447
symbol: acS2
gene_biotype: protein_coding
description:
  Putative Acetyl-coenzyme A synthetase; Function:-Enables the cell to use acetate during aerobic growth to generate energy via the TCA cycle, and biosynthetic compounds via the glyoxylate shunt. Acetylates cheY, the response regulator involved in flagellar movement and chemotaxis. Activity:- ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA Entry name SWISSPROT:ACSA_ECOLI InterPro:- IPR000873; AMP-bind. Pfam:- PF00501; AMP-binding; 1. Identities = 114/506 (22%) Number of predicted TMHs: 0; Family membership.


ensembl_gene_id: azo3448
symbol: azo3448
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to Daro03001225 of Dechloromonas aromatica of 43% (gi|46141136|ref|ZP_00153001.2|(NBCI ENTREZ)). Pfam: Protein of unknown function. signal peptide. TMH in signal peptide.


ensembl_gene_id: azo3449
symbol: hemL
gene_biotype: protein_coding
description:
  Glutamate-1-semialdehyde 2,1-aminomutase (GSA) (GSA-AT). TIGRFAM: hemL: glutamate-1-semialdehyde-21-ami; High confidence in function and specificity.


ensembl_gene_id: azo3450
symbol: thiE
gene_biotype: protein_coding
description:
  Thiamine-phosphate diphosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.


ensembl_gene_id: azo3451
symbol: thiD2
gene_biotype: protein_coding
description:
  Phosphomethylpyrimidine kinase (HMP-phosphate kinase) (HMP-P kinase). catalyzes the phosphorylation of hmp-p to hmp-pp (by similarity) TIGRFAM: HMP-P_kinase: phosphomethylpyrimidine kinase; Specificity unclear.


ensembl_gene_id: azo3453
symbol: pilG
gene_biotype: protein_coding
description:
  Pilus protein, Response_reg. Pfam: PF00072; Response_reg. SMART: SM00448; REC. PilG protein. IS INVOLVED IN PILUS BIOSYNTHESIS AND TWITCHING MOTILITY. MAY ACT AS A SINGLE-DOMAIN RESPONSE REGULATOR WHOSE FUNCTION MAY BE TO RECEIVE A CERTAIN ENVIRONMENTAL SIGNAL(S) AND THEN TRANSDUCE THAT SIGNAL TO THE PILUS ASSEMBLY MACHINERY VIA SPECIFIC PROTEIN-PROTEIN INTERACTIONS; High confidence in function and specificity.


ensembl_gene_id: azo3454
symbol: pilH
gene_biotype: protein_coding
description:
  Pilus protein, Response_reg. Pfam: PF00072; Response_reg. SMART: SM00448; REC. PilH protein. MAY BE A PART OF A SIGNAL-TRANSDUCTION SYSTEM THAT REGULATES TWITCHING MOTILITY BY CONTROLLING PILUS FUNCTION (EXTENSION AND RETRACTION); High confidence in function and specificity.


ensembl_gene_id: azo3455
symbol: pilI
gene_biotype: protein_coding
description:
  Probable pilus biogenesis protein, CheW. Protein pilI. MAY BE A PART OF A SIGNAL-TRANSDUCTION SYSTEM THAT REGULATES TWITCHING MOTILITY BY CONTROLLING PILUS FUNCTION (EXTENSION AND RETRACTION). InterPro: CheW-like domain; High confidence in function and specificity.


ensembl_gene_id: azo3457
symbol: pilL
gene_biotype: protein_coding
description:
  Putative pilus biogenese protein, ATPbind_ATPase. IPR004358; Bact_sens_pr_C. IPR002545; CheW. IPR004105; H-kinase_dim. IPR005467; His_kinase. IPR008207; Hpt. IPR008208; Hpt_N. IPR001789; Response_reg. Pfam: PF01584; CheW. PF02895; H-kinase_dim. PF02518; HATPase_c. PF01627; Hpt. PF00072; Response_reg. SMART: SM00260; CheW. SM00387; HATPase_c. SM00073; HPT. SM00448; REC. HTH reporting nucleic acid binding motif; Function unclear.


ensembl_gene_id: azo3458
symbol: phrB
gene_biotype: protein_coding
description:
  Deoxyribodipyrimidine photo-lyase; DNA photolyase (Photoreactivating enzyme). THIS ENZYME CATALYZES THE LIGHT-DEPENDENT MONOMERIZATION (300-600 NM) OF CYCLOBUTYL PYRIMIDINE DIMERS (IN CIS-SYN CONFIGURATION) WHICH ARE FORMED BETWEEN ADJACENT BASES ON THE SAME DNA STRAND UPON EXPOSURE TO ULTRAVIOLET RADIATION. TIGRFAM: phr2: deoxyribodipyrimidine photolyase; High confidence in function and specificity.


ensembl_gene_id: azo3460
symbol: yqgF
gene_biotype: protein_coding
description:
  Putative Hollyday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.


ensembl_gene_id: azo3461
symbol: pyrR
gene_biotype: protein_coding
description:
  Phosphoribosyl transferase or bifunctional regulator/uracil phosphoribosyltransferase; High confidence in function and specificity.


ensembl_gene_id: azo3462
symbol: pyrB
gene_biotype: protein_coding
description:
  Aspartate carbamoyltransferase (Aspartate transcarbamylase) (Carbamylaspartotranskinase) (ATCase); High confidence in function and specificity; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.


ensembl_gene_id: azo3463
symbol: pyrX
gene_biotype: protein_coding
description:
  Probable dihydroorotase. Homology to pyrC' of P. putida of 44% (sprot|PYRX_PSEPU) This protein tends to appear in a large, multifunctional complex with aspartate transcarbamoylase. It is inactive but is required as a non-catalytic subunit of aspartate transcarbamoylase. InterPro: Dihydroorotase multifunctional complex type (IPR004722); Dihydroorotase (IPR002195) Tigrfam: pyrC_multi: dihydroorotase multifunctional complex type no signal peptide no TMHS; High confidence in function and specificity.


ensembl_gene_id: azo3464
symbol: yggU
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to vc0458 of V. clholerae of 48% (sprot:Y458_VIBCH). InterPro: DUF167 (IPR003748). Pfam: Uncharacterized ACR, YGGU family, COF1872. no signal peptide. no TMHs; Belongs to the UPF0235 family.


ensembl_gene_id: azo3465
symbol: azo3465
gene_biotype: protein_coding
description:
  Conserved hypothetical YGGT-family protein. Homology to ne0394 of N. europae of 37% (trembl|Q82X94). This family consists of a repeat found in conserved hypothetical integral membrane proteins. The function of this region and the proteins which possess it is unknown. InterPro: YGGT family (IPR003425). Pfam: YGGT family. no signal peptide. 5 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo3466
symbol: proC
gene_biotype: protein_coding
description:
  Probable 1-pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.


ensembl_gene_id: azo3467
symbol: azo3467
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.


ensembl_gene_id: azo3468
symbol: pilT
gene_biotype: protein_coding
description:
  Twitching motility protein; Tfp retraction protein PilT, involved in the twitching motility mechanism together with PilU,; High confidence in function and specificity.


ensembl_gene_id: azo3469
symbol: pilU2
gene_biotype: protein_coding
description:
  Twitching motility protein; Tfp retraction protein PilU is involved in the Twitching Motility mechanism,; High confidence in function and specificity.


ensembl_gene_id: azo3470
symbol: vgrG
gene_biotype: protein_coding
description:
  Probable vgr-related protein, 44% identity(54% similarity) to TrEMBL; Q7P238.TrEMBL;Q8XRU3(44% identity). Signal Peptide Present. Has SMART;SM00438,Repressor of transcription;IPR000967, Znf_NFX1;This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger: C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C,where X can be any amino acid, and numbers in brackets indicate the number of residues. The two position can be either his or cys. This domain is found in the human transcriptional repressor NK-X1, a repressor of HLA-DRA transcription; the Drosoph [...]


ensembl_gene_id: azo3471
symbol: azo3471
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to RS02436 of R.solanacearum of 41% (trembl:Q8XUG9). No domains predicted. No signal peptide present. No TMH reported present.


ensembl_gene_id: azo3472
symbol: azo3472
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to RS02435 of R. solanarcearum of 43% (trembl|Q8XUH0(SRS)). No domains predicted. Signal Peptide present. No TMH reported present; Conserved hypothetical protein.


ensembl_gene_id: azo3473
symbol: azo3473
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to RS02435 of R. solanacearum of 47% (trembl:Q8XUH0). No domains predicted. No signal peptide. No TMHs.


ensembl_gene_id: azo3474
symbol: azo3474
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to RS02435 of R. solanarcearum of 44% (trembl|Q8XUH0(SRS)). No domains predicted. Signal Peptide present. No TMH reported present; Conserved hypothetical protein.


ensembl_gene_id: azo3477
symbol: azo3477
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Predicted N6-adenine-specific DNA methylase; Belongs to the methyltransferase superfamily.


ensembl_gene_id: azo3478
symbol: azo3478
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to rsc2369 of R. solanacearum of 52% (trembl|Q8XWV1). no damians predicted. signal peptide. no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo3479
symbol: fdhC
gene_biotype: protein_coding
description:
  Putative formate dehydrogenase gamma subunit. Homology to fdhC of W. succinogenes of 21% (TREMBL:P28180). Formate dehydrogenase is a membrane-bound complex, formed of at least three different subunits; probable heterotetramer of two FDHA, one FDHB and one FDHC. FdhC probably anchors the enzyme in the membrane and IS PROBABLY THE CYTOCHROME B556(FDO) COMPONENT. no good domains signal peptide 5 TMHs; Family membership.


ensembl_gene_id: azo3480
symbol: azo3480
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to rsc2371 of R. solanacearum of 36% (trembl|Q8XWU9). no doamins predicted. signal peptide. no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo3481
symbol: fdhB
gene_biotype: protein_coding
description:
  Probable formate dehydrogenase iron-sulfur subunit. Homology to fdhB of W. succinogenes of 63% (SWISSPROT:FDHB_WOLSU) THIS CHAIN IS AN ELECTRON TRANSFER UNIT CONTAINING 18 CYSTEINE RESIDUES 16 OF WHICH OCCUR IN THREE CLUSTERS. InterPro: 4Fe-4S ferredoxin iron-sulfur binding domain (IPR001450); 7Fe ferredoxin (IPR000813); 3Fe-4S ferredoxin (IPR001080) Pfam: 4Fe-4S binding domain no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo3482
symbol: fdhA2
gene_biotype: protein_coding
description:
  Probable formate dehydrogenase alpha subunit. Homology to fdha of W. succinogenes of 44% (pir|S18213) The formate dehydrogenase catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The electrons are utilized mainly in the nitrate respiration by nitrate reductase InterPro: Prokaryotic molybdopterin oxidoreductases (IPR006655) Pfam: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain singal peptide no TMHs; High confidence in function and specificity.


