# geneInfo

ensembl_gene_id: azo0001
symbol: dnaA
gene_biotype: protein_coding
description:
  Chromosomal replication initiator protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.


ensembl_gene_id: azo0002
symbol: dnaN
gene_biotype: protein_coding
description:
  DNA-directed DNA polymerase; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of repl [...]


ensembl_gene_id: azo0003
symbol: gyrB
gene_biotype: protein_coding
description:
  DNA topoisomerase (ATP-hydrolysing); A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent [...]


ensembl_gene_id: azo0004
symbol: hsdM
gene_biotype: protein_coding
description:
  Site-specific DNA-methyltransferase (adenine-specific); METHYLATION OF SPECIFIC ADENINE RESIDUES; REQUIRED FOR BOTH RESTRICTION AND MODIFICATION ACTIVITIES (BY SIMILARITY), TREMBL:Q7VCN2 (55% identity). InterPro (IPR002296): N6 adenine-specific DNA methyltransferase,N12 class. InterPro (IPR003356): N-6 DNA methylase. InterPro (IPR003665): Type I restriction-modification system M subunit. Pfam (PF02384): N-6 DNA Methylase. Pfam (PF02506): Type I restriction modification system, M protein; High confidence in function and specificity.


ensembl_gene_id: azo0006
symbol: azo0006
gene_biotype: protein_coding
description:
  Hypothetical protein predicted by Glimmer/Critica. No homology to the data bank no domains predicted no signal peptide no TMHS.


ensembl_gene_id: azo0007
symbol: hsdS
gene_biotype: protein_coding
description:
  Type I site-specific deoxyribonuclease; S subunit, DNA SPECIFICITY SUBUNIT REQUIRED FOR RESTRICTION AND MODIFICATION, TREMBL:Q9AAH7 (31% identity); TREMBL:Q8PIJ8 (28% identity). Pfam (PF01420): Type I restriction modification DNA specificity domain. InterPro (IPR000055): Restriction modification system DNA specificity domain; High confidence in function and specificity.


ensembl_gene_id: azo0008
symbol: azo0008
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to RB11641 of R.baltica of 42% (tremble:Q7TTG8). No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo0009
symbol: azo0009
gene_biotype: protein_coding
description:
  Transcriptional regulatory protein, 35% identity to TrEMBL;Q89JK0. Has Prosite, PS01117; HTH_MARR_1 domain; The marR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH)domain of about 135 amino acids present in transcription regulators of the marR/slyA family,involved in the development of antibiotic resistance; Function unclear.


ensembl_gene_id: azo0010
symbol: hsdR
gene_biotype: protein_coding
description:
  Type I site-specific deoxyribonuclease; SUBUNIT R IS REQUIRED FOR BOTH NUCLEASE AND ATPASE ACTIVITIES BUT NOT FOR MODIFICATION (BY SIMILARITY),TREMBL:Q9AAH5 (64% identity); TREMBL:Q8FUH0 (40% identity). InterPro (IPR001410): DEAD/DEAH box helicase TIGRFAM (TIGR00348): Type I site-specific deoxyribonuclease, HsdR family; High confidence in function and specificity.


ensembl_gene_id: azo0011
symbol: azo0011
gene_biotype: protein_coding
description:
  The short-chain dehydrogenases/reductases family is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases, similarity to SWISSPROT:P37959 (35% identity); TREMBL:Q930L8 (44% identity); TREMBL:Q9I3W5 (41% identity). Pfam (PF00106): Short chain dehydrogenase. InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase; Specificity unclear.


ensembl_gene_id: azo0012
symbol: bdhR
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family,; High confidence in function and specificity; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: azo0013
symbol: rluA1
gene_biotype: protein_coding
description:
  Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil hydrolyase). Responsible for synthesis of pseudouridine from uracil-746 in 23S ribosomal RNA and from uracil-32 in the anticodon stem and loop of transfer RNAs ; Family membership.


ensembl_gene_id: azo0014
symbol: nifF1
gene_biotype: protein_coding
description:
  Probable flavodoxin; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family.


ensembl_gene_id: azo0015
symbol: azo0015
gene_biotype: protein_coding
description:
  Conserved hypothetical protein, 50% identitcal(67% similarity) to TrEMBL;Q888U7.TrEMBL;Q747X0(33% identity). Has PF03473, MOSC domain;IPR005302; The MOSC (MOCO sulfurase C-terminal) domain is a superfamily of beta-strand-rich domains identified in the molybdenum cofactor sulfurase and several other proteins from both prokaryotes and eukaryotes. These MOSC domains contain an absolutely conserved cysteine and occur either as stand-alone forms such as P32157, or fused to other domains such as NifS-like catalytic domain in Molybdenum cofactor sulfurase. The MOSC domain is predicted to be a [...]


ensembl_gene_id: azo0016
symbol: azo0016
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to Daro03002995 of Dechloromonas aromatica of 34% (ZP_00348572.1). No signal peptide present. TMHMM reporting one transmembrane helix. No domains predicted; Conserved hypothetical protein.


ensembl_gene_id: azo0017
symbol: azo0017
gene_biotype: protein_coding
description:
  Hypothetical protein, 28% identity to TrEMBL;Q8E8U4. Has PF07049, Protein of unknown function (DUF1332); IPR010755;This family consists of several hypothetical bacterial proteins of around 165 residues in length. The function of this family is unknown; Function unclear.


ensembl_gene_id: azo0018
symbol: azo0018
gene_biotype: protein_coding
description:
  ThiJ/PfpI family protein; InterPro (IPR002818): ThiJ/PfpI. Pfam (PF01965): DJ-1/PfpI family; Specificity unclear.


ensembl_gene_id: azo0019
symbol: azo0019
gene_biotype: protein_coding
description:
  This family includes extracellular ligand binding domains of a wide range of receptors and it also includes the bacterial amino acid binding proteins of known structure. Similar to trembl|Q8XVG7 (38%). Pfam (PF01094): Receptor family ligand binding region SignalP reporting Signal peptide; Function unclear.


ensembl_gene_id: azo0020
symbol: azo0020
gene_biotype: protein_coding
description:
  Probable transcriptional regulator, LysR family,; Family membership; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: azo0021
symbol: iorA
gene_biotype: protein_coding
description:
  Probable isoquinoline 1-oxidoreductase, alpha subunit Homology to iroA of B. diminuta of 58% (sprot|IORA_BREDI). InterPro: [2Fe-2S] binding domain (IPR002888); Ferredoxin (IPR001041) Pfam: 2FE-2S iron-sulfur cluster binding domein, [2Fe-2S] binding domain no signal peptide no TMHs; Specificity unclear.


ensembl_gene_id: azo0022
symbol: iorB
gene_biotype: protein_coding
description:
  Putative isoquinoline 1-oxidoreductase, beta subunit Homology to iorB of B. diminuta of 34% (sprot|IORB_BREDI). InterPro: Aldehyde oxidase and xanthine dehydrogenase C terminus (IPR000674) Pfam: Aldehyde oxidase and xanthine dehydrogenase signal peptide no TMHs; Family membership.


ensembl_gene_id: azo0023
symbol: azo0023
gene_biotype: protein_coding
description:
  Conserved hypothetical protein (Xanthine like-dehydrogenase accessory factor). Homology to Rsc1464 (hyp. protein) of R. solanacearum of 66% (CAD15165). InterPro: DUF182 Pfam: uncharacterized BCR, COG1975 no signal peptide no TMHs.


ensembl_gene_id: azo0024
symbol: azo0024
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Purine catabolism protein pucB. TREMBL:Q8XZ0: 40% identity, 47% similarity Required for xanthine dehydrogenase activity. Could be involved in formation of the molybdenum cofactor required by xanthine dehydrogenase. FUNCTION: Links a guanosine 5'-phosphate to molydopterin (MPT) forming molybdopterin guanine dinucleotide (MGD) (By similarity). PATHWAY: Molybdenum cofactor biosynthesis. SUBCELLULAR LOCATION: Cytoplasmic (By similarity). SIMILARITY: Belongs to the mobA family. Pfam:UPF0007:Uncharacterized protein family UPF000 ispD: 4-diphosphocytidyl-2C-met [...]


ensembl_gene_id: azo0025
symbol: azo0025
gene_biotype: protein_coding
description:
  Hypothetical protein yddH. TREMBL:Q7NTI1:66% identity, 76% similarity InterPro:IPR002563; Flavin_Reduct. Pfam:PF01613; Flavin_Reduct; InterPro: Flavin reductase-like domain Non-secretory protein with no signal peptide. No transmembrane helices TIGR00357: PilB-related protein; High confidence in function and specificity.


ensembl_gene_id: azo0026
symbol: acbB
gene_biotype: protein_coding
description:
  Putative dTDP-glucose 4-6-dehydratase; dTDP-glucose 4,6-dehydratase, AcbB,probably involved in the biosynthesis of the acarviose moiety of the alpha-glucosidase inhibitor acarbose. Belongs to the sugar epimerase family. dTDP-glucose dehydratase subfamily. 30% dTDP_gluc_dehyt.IPR001509; Epimerase_Dh. Pfam:PF01370; Epimerase; 1. TIGRFAMs:TIGR01181; dTDP_gluc_dehyt; 1; High confidence in function and specificity.


ensembl_gene_id: azo0027
symbol: exoU
gene_biotype: protein_coding
description:
  Glycosyltransferase; Putative glycosyl transferase. Weak Homology with hits spanning the entire length of protein. 24% identitcal to TrEMBL;Q8F209.TrEMBL; Q89D69(33% identity) Has PF00535,Glycosyl transferase:IPR001173;Diverse family,transferring sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids. The biosynthesis of disaccharides,oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These are enzymes that catalyse the trans [...]


ensembl_gene_id: azo0028
symbol: azo0028
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein Homology to cv0580 of C. violaceum of 41% (trembl|Q7P0I7(SRS)) no domains predicted no signal peptide 2 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0029
symbol: azo0029
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein; Similar to a tellurium resistance protein TerC. Belongs to the terC family. This family contains a number of integral membrane proteins that also contains the TerC protein. TerC has been implicated in resistance to tellurium. Similar to a putative membrane protein TerC,80% identity to TrEMBL; Q5P410 from Azoarcus sp EnN1. 50% RNA_rec_mot.IPR005496; TerC. Pfam:PF03741; TerC; 1. TIGR:SPTO2691. TMHelix:5; Conserved hypothetical protein.


ensembl_gene_id: azo0030
symbol: gltR
gene_biotype: protein_coding
description:
  Probable transcriptional regulator, LysR family; HTH-type transcriptional regulator gltR. POSITIVE REGULATOR OF GLUTAMATE BIOSYNTHESIS (GLTAB GENES). NEGATIVELY REGULATES ITS OWN EXPRESSION. Similar to SWISSPROT: sprot|GLTR_BACSU (33% Bacillus subtilis, HTH-type transcriptional regulator GltR) InterPro: IPR000847 HTH_LysR. IPR009058 Winged helix DNA-binding. Pfam: PF00126 Bacterial regulatory helix-turn-helix protein,lysR family. HTH reporting nucleic acid binding motif; High confidence in function and specificity.


ensembl_gene_id: azo0031
symbol: azo0031
gene_biotype: protein_coding
description:
  Permease member of the Major Facilitator Superfamily (MFS).MFS are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. 25% MFS.IPR005828; Sub_transporter. Pfam:PF00083; sugar_tr; 1. TMHelix: 10; High confidence in function and specificity.


ensembl_gene_id: azo0032
symbol: azo0032
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to nfa21510 of Nocardia farcinica of 31% (trembl:Q5YXU4). No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo0033
symbol: azo0033
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to nfa21510 of Nocardia farcinica of 42% (trembl:Q5YXU4). No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo0034
symbol: azo0034
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to PP2042 of P. putida of 34% (TrEMBL;Q88L93) Has PF06980:(IPR010727)Protein of unknown function (DUF1302);This family contains a number of hypothetical bacterial proteins of unknown function that are approximately 600 residues long. Most family members seem to be from Pseudomonas. No TMHs signal peptide present; Conserved hypothetical protein.


ensembl_gene_id: azo0035
symbol: azo0035
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to PA3421 of P. aeruginosa of 50% (TrEMBL;Q9HYI4) Has (IPR010752)PF07044:Protein of unknown function (DUF1329);This family consists of several hypothetical bacterial proteins of around 475 residues in length. The majority of family members are from Pseudomonas species but the family also contains sequences from Shewanella oneidensis and Thauera aromatica. No TMHs signal peptide present; Conserved hypothetical protein.


ensembl_gene_id: azo0036
symbol: azo0036
gene_biotype: protein_coding
description:
  Conserved hypothetical BNR domain protein. Homology to pp3201 of P. putida of 40% (trembl|Q88I01). InterPro: BNR repeat (IPR002860) Pfam: BNR repeat BNR repeats are short repeats never found closer than 40 residues together, which suggests that the repeat is structurally longer. These repeats are found in many glycosyl hydrolases as well as other extracellular proteins of unknown function. singal peptide no TMHs; Function unclear.


ensembl_gene_id: azo0037
symbol: azo0037
gene_biotype: protein_coding
description:
  Probable exporter of RND superfamily; Putative membrane protein MJ1562. TREMBL:Q88LB6: 47% identity, 63% similarity InterPro:IPR000731; SSD_5TM InterPro: HMGCR/Patched 5TM box Pfam:Patched:Patched family 2A067: efflux transporter putative Signal peptide absent. Presence of 12 transmembrane helices; Family membership.


ensembl_gene_id: azo0038
symbol: azo0038
gene_biotype: protein_coding
description:
  The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. EntA,a 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase enzyme,is involved in the third stage of enterobactin biosynthesis and converts isochorismate to 2,3-dihydroxybenzoic acid (DHBA), SWISSPROT:Q10855 (37% identity); TREMBL:Q89M15 (36% identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. InterPro (IPR003560): 2,3-dihydro-2,3-dihydroxybenzoate dehydroge [...]


ensembl_gene_id: azo0039
symbol: azo0039
gene_biotype: protein_coding
description:
  Conservd hypothetical protein, 79% identity(85% similarity) to TrEMBL;Q88GU7. Has PF02566, OsmC-like protein; IPR003718; Osmotically inducible protein C (OsmC) (P23929) is a stress -induced protein found in E. Coli. This family also contains a organic hydroperoxide detoxification protein (O68390) that has a novel pattern of oxidative stress regulation. Has PF02624, YcaO-like fatty acid binding protein;IPR003776, DUF181;This is a family of proteins of unknown function.


ensembl_gene_id: azo0041
symbol: azo0041
gene_biotype: protein_coding
description:
  The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases,TREMBL:Q9I376 (49% identity); SWISSPROT:P50197 (44% identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase; Specificity unclear.


ensembl_gene_id: azo0042
symbol: azo0042
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to bll2189 of B. japonicum of 48% (trembl|Q89T61). Has PF06577, Protein of unknown function (DUF1134);IPR008325,UCP033924; This family consists of several hypothetical bacterial proteins of unknown function. Signal peptide. TMH present in signal peptide; Conserved hypothetical protein.


ensembl_gene_id: azo0043
symbol: pxpA
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.


ensembl_gene_id: azo0044
symbol: azo0044
gene_biotype: protein_coding
description:
  Conserved hypothetical urea amidolyase-related protein. Homology to ybgK of E. coli of 36% (sprot|YBGK_ECOLI). InterPro: DUF183 (IPR003778) Uncharacterized domain in proteins of unknown function. This domain is found in a multifunctional enzyme, urea amidolyase, from yeast. Pfam: DFU182, uncharcterized ACR,COG1984 no signal peptide no TMHs; Function unclear.


ensembl_gene_id: azo0045
symbol: azo0045
gene_biotype: protein_coding
description:
  Conserved hypothetical protein ybgJ. Homology to ybgJ of E. coli of 41% (sprot|YBGJ_ECOLI) InterPro: DUF213 (IPR003833) Pfam: DUF213, uncharacterized ACR, COG2049 no signal peptide no TMHs; Function unclear.


ensembl_gene_id: azo0046
symbol: dehH
gene_biotype: protein_coding
description:
  Hypothetical haloacetate dehalogenase H-1 (EC 3.8.1.3). Haloacetate + H(2)O = glycolate + halide TREMBL:Q8Y2S9: 58% identity, 67% similarity Gene name:dehH from Ralstonia solanacearum genome project. InterPro: Alpha/beta hydrolase fold InterPro:IPR000073; A/b_hydrolase. IPR000379: Ser_estrs. Pfam:PF00561; Abhydrolase_1 nadp_idh_euk: isocitrate dehydrogenase No TMH present absence of signal peptide; Family membership.


ensembl_gene_id: azo0047
symbol: azo0047
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein Homology to pa4487 of P. aeruginosa of 52% (trembl|Q9HVT4(SRS)) no domains predicted signal peptide no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0048
symbol: azo0048
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to rsc3028 of R. solanacearum of 57% (trembl|Q8XV04(SRS)) no domains predicted signal peptide no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0049
symbol: azo0049
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to PA4488 of P. aeruginosa of 47% (trembl|Q9HVT3(SRS)) No domains predicted. No TMHs. Singal Peptide Present; Conserved hypothetical protein.


ensembl_gene_id: azo0050
symbol: phaZ
gene_biotype: protein_coding
description:
  Poly (3-hydroxybutyrate) depolymerase; This protein degrades water-insoluble and water-soluble PHB to monomeric D(-)-3-hydroxybutyrate,TREMBL:Q9LBN6 (35% identity); TREMBL:Q46334 (34% identity). SignalP predicting signal peptide; High confidence in function and specificity.


ensembl_gene_id: azo0051
symbol: azo0051
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to ebA624 of Azoarcus sp. EbN1 of 52% (gnl|keqq|eba:ebA624(KEGG)). no domains predicted. no signal peptide. 3 TMHs.


ensembl_gene_id: azo0052
symbol: azo0052
gene_biotype: protein_coding
description:
  Hypothetical secreted protein. No homology of the entire protein to the data bank. InterPro:Esterase/lipase/thioesterase family active site Pfam:Putative serine esterase (DUF676) This family of proteins are probably serine esterase type enzymes. Signal peptide present (Signal P predicted) No transmembrane helices.


ensembl_gene_id: azo0055
symbol: azo0055
gene_biotype: protein_coding
description:
  ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs, TREMBL:O54136 (41% identity); TREMBL:Q8RCZ7 (40% identity). Pfam (PF00005): ABC transporter. TC (3.A.1): The ATP-binding Cassette (ABC) Superfamily; Family membership.


ensembl_gene_id: azo0056
symbol: azo0056
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to cv3942 of C. violaceum of 30% (trembl|Q7NR42) InterPro: DUF214 (IPR003838) Pfam: Predicted permease This is a family of predicted permeases and hypothetical transmembrane proteins. One member has been shown to transport lipids targeted to the outer membrane across the inner membrane, a step which requires ATP. Signal peptide 3 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0057
symbol: azo0057
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to BPSS2323 of Burkholderia pseudomallei of 45% (trembl:Q63HU7). no domains predicted. singal peptide. no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0058
symbol: azo0058
gene_biotype: protein_coding
description:
  Hypothetical secreted protein. No homology to the data bank. No domains predicted. signal peptide TMHs inside of the signal peptide.


ensembl_gene_id: azo0059
symbol: azo0059
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to rsc3030 of R. solanacearum of 48% (sprot|YU30_RALSO) Pfam: Alpha-2-macroglobulin family Nterminal region (PF01835, PF07703) signal peptide no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0060
symbol: azo0060
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to RS04726 of R. solanacearum of 55% (trembl|Q8XV01(SRS)) Has PF06672;(IPR009558)Protein of unknown function (DUF1175):This family consists of several hypothetical bacterial proteins of around 210 residues in length. The function of this family is unknown. No TMHs signal peptide present; Conserved hypothetical protein.


ensembl_gene_id: azo0061
symbol: azo0061
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to RS04725 of Ralstonia solanacearum of 43% (trembl|Q8XV00(SRS)) No domains predicted. Signal Peptide Present. NO TMH reported present; Conserved hypothetical protein.


ensembl_gene_id: azo0062
symbol: azo0062
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to MCA0287 of Methylococcus capsulatus of 48% (trembl:Q60C24). no domains predicted. no signal peptide. no TMHs.


ensembl_gene_id: azo0063
symbol: azo0063
gene_biotype: protein_coding
description:
  Hypothetical protein. No good homology to the data bank. No domains predicted. No TMHs Probable signal peptide.


ensembl_gene_id: azo0064
symbol: azo0064
gene_biotype: protein_coding
description:
  Probable permease; Hypothetical protein ydiK.Integral membrane protein (potential). similarity:belongs to the upf0118 (perm) family TREMBL:Q7WQ94: 68% identity; 81% similarity. PIR:AD2790; AD2790.C97569; C97569. InterPro:IPR000585; Hemopexin. IPR002549; UPF0118. Pfam: PF01594; UPF0118; 2A0604s01: protein-export membrane pro Pfam: presence of DUF20 domain and branched chain amino acid transport. TIGRFAM: general nitrate transport. Signal P predicted signal peptide and TMHMM predicted transmembrane helices; Function unclear.


ensembl_gene_id: azo0065
symbol: azo0065
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; 64% similarity with ABC-type multidrug transport system, ATPase and permease components [Dechloromonas aromatica RCB]. and.


ensembl_gene_id: azo0066
symbol: azo0066
gene_biotype: protein_coding
description:
  Probable enoyl-CoA hydratase/isomerase; Enoyl-CoA hydratase and 3-2trans-enoyl-CoA isomerase are two enzymes involved in fatty acid metabolism. ECH catalyzes the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA and ECI shifts the 3- double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position.In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA), ECH and ECI are also part of a multifunctional enzyme which contains both a HCDH and a 3-hydroxybutyryl-CoA epimerase domain. InterPro: Enoyl-CoA hydratase/isomerase Entry name TREMBL:Q8PMW0 P [...]


ensembl_gene_id: azo0067
symbol: polC
gene_biotype: protein_coding
description:
  DNA polymerase III polC-type (EC 2.7.7.7) (PolIII). Required for replicative DNA synthesis. This DNA polymerase also exhibits 3 to 5 exonuclease activity (By similarity). InterPro: Exonuclease dnaq: DNA polymerase III epsilon subun; High confidence in function and specificity.


ensembl_gene_id: azo0068
symbol: azo0068
gene_biotype: protein_coding
description:
  Hypothetical protein. No good homology with any hits of this length protein. No Domains/Features/motifs/signal peptide present.


ensembl_gene_id: azo0069
symbol: azo0069
gene_biotype: protein_coding
description:
  Conserved hypothetical globin-like protein. Homology to rpa2719 of R. palustris of 46% (tremblnew|CAE28161). Interpro: IPR009050 Globin-like. Globins are heme-containing proteins involved in binding and/or transporting oxygen. This family of heme binding proteins are found mainly in bacteria. No signal peptide. No TMHs; Function unclear.


ensembl_gene_id: azo0070
symbol: azo0070
gene_biotype: protein_coding
description:
  Hypothetical membrane protein. no homology to the data bank. no domains predicted.signal peptide. 1 TMHs.


ensembl_gene_id: azo0073
symbol: azo0073
gene_biotype: protein_coding
description:
  Putative MFS permease; Permease,member of the Major Facilitator Superfamiliy (MFS)transporters. MFS are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Probable sugar-proton symporter transmembrane protein ProP proline/betaine transporter. Low homology to the hypothetical protein ycxA (ORF5)involved in the biosynthesis of the pepitde antibiotic Bacitracin in B. subtilis. Signal peptide; Specificity unclear.


ensembl_gene_id: azo0074
symbol: azo0074
gene_biotype: protein_coding
description:
  Hypothetical protein yfbK. The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders [1]. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. trembl:Q8P6Q2: 55% identity; 66% similarity InterPro:IPR002016; Peroxidase. IPR002035; VWF_A. Pfam: PF00092; VWA; 1. SMART: SM00327; VWA; 1. cdhD: CO dehydrogenase/acetyl-CoA syn Signal peptide present (0.927 probability); SignalP predicted. No transmembrane helices (TMHMM predicted); Function unclear.


ensembl_gene_id: azo0075
symbol: rpoE
gene_biotype: protein_coding
description:
  Probable RNA polymerase sigma-E factor (sigma-24),; High confidence in function and specificity; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: azo0076
symbol: azo0076
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to BB3269 of Bordetella bronchiseptica of 31% (trembl|Q7WHD9(SRS)). No domains predicted. no signal peptide 1 TMH; Conserved hypothetical protein.


ensembl_gene_id: azo0078
symbol: azo0078
gene_biotype: protein_coding
description:
  Hypothetical protein. Weak homology with hits over entire length. PS50821; PAZ domain present(Prosite).


ensembl_gene_id: azo0079
symbol: rtcB
gene_biotype: protein_coding
description:
  rtcB protein, 57% identical(70% similairty) to TrEMBL;Q7NZ85 TrEMBL;Q8FCS7(56% identity). Has IPR001233;UPF0027(PF01139, Uncharacterized protein family):A number of uncharacterized proteins including Escherichia coli rtcB, Mycobacterium tuberculosis MtCY441.01., Caenorhabditis elegans F16A11.2 and Methanococcus jannaschii MJ0682 belong to this family. Has no Signal peptide or TMH present; High confidence in function and specificity.


ensembl_gene_id: azo0080
symbol: prfC
gene_biotype: protein_coding
description:
  Peptide chain release factor; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.


ensembl_gene_id: azo0081
symbol: azo0081
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to pa4965 ao P. aeruginosa of 50% (trembl|Q9HUK0) Pfam: Retroviral aspartyl protease no signal peptide 1 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0082
symbol: rdgC
gene_biotype: protein_coding
description:
  Recombination associated protein RdgC; May be involved in recombination; Belongs to the RdgC family.


ensembl_gene_id: azo0084
symbol: rsuA
gene_biotype: protein_coding
description:
  Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) (16S pseudouridylate 516 synthase) (16S pseudouridine 516 synthase) (Uracil hydrolyase). Responsible for synthesis of pseudouridine from uracil-516 in 16S ribosomal RNA; Family membership; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: azo0085
symbol: azo0085
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to RS04117 of R.solanacearum of 52% (tremble:Q8Y0H4) No domains predicted. No signal peptide. No TMHs.


ensembl_gene_id: azo0086
symbol: efp
gene_biotype: protein_coding
description:
  Putative elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.


ensembl_gene_id: azo0087
symbol: azo0087
gene_biotype: protein_coding
description:
  Hypothetical secreted protein. Homology to RS00193 of R. solanacearum of 26% (tremble:Q8XVC9) PF02987, Late embryogenesis abundant protein;IPR004238;Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. No TMHs Signal peptide present.


ensembl_gene_id: azo0088
symbol: uvrA1
gene_biotype: protein_coding
description:
  Putative excinuclease ABC subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.


ensembl_gene_id: azo0089
symbol: azo0089
gene_biotype: protein_coding
description:
  Conserved hypothetical hydrogenase cytochrome b-type subunit. Homology to C. vinosum of 56% (trembl|Q46471). Involved in electron transfer from hydrogen to oxygen. probable signal peptide probable 4 TMHs; Family membership.


ensembl_gene_id: azo0090
symbol: cycA1
gene_biotype: protein_coding
description:
  Probable cytochrome c'. Homology to cycA of C. vinosum of 61% (sprot|CYCP_CHRVI). CYTOCHROME C IS THE MOST WIDELY OCCURRING BACTERIAL C-TYPE CYTOCHROME. CYTOCHROMES C ARE HIGH-SPIN PROTEINS AND THE HEME HAS NO SIXTH LIGAND. THEIR EXACT FUNCTION IS NOT KNOWN. Pfam: Cytochrome c. signal peptide no TMHs; Function unclear.


ensembl_gene_id: azo0092
symbol: mucD1
gene_biotype: protein_coding
description:
  Probable serine protease. Homology to mucD of P. aeruginosa of 55% (AAC43718). Pfam: Trypsin; PDZ domain (also known as DHR or GLGF) signal peptide no TMHs; High confidence in function and specificity; Belongs to the peptidase S1C family.


ensembl_gene_id: azo0093
symbol: irgA1
gene_biotype: protein_coding
description:
  Putative TonB-dependent receptor; 23% TonB_boxC. Pfam:PF00593; TonB_dep_Rec; 1; High confidence in function and specificity.


ensembl_gene_id: azo0094
symbol: oxyR
gene_biotype: protein_coding
description:
  oxyR, Hydrogen peroxide-inducible genes activator. BELONGS TO THE LYSR FAMILY OF TRANSCRIPTIONAL REGULATORS REQUIRED FOR THE INDUCTION OF A REGULON OF HYDROGEN PEROXIDE INDUCIBLE GENES SUCH AS CATALASE GLUTATHIONE-REDUCTASE ETC. (BY SIMILARITY). mreB: cell shape determining protein M 51% HTH_LysR. IPR005119; LysR_subst. IPR009058; Wing_hlx_DNA_bnd. PF00126; HTH_1; 1. PF03466; LysR_substrate; 1. HTH reporting nucleic acid binding motif; High confidence in function and specificity.


ensembl_gene_id: azo0095
symbol: azo0095
gene_biotype: protein_coding
description:
  DNA topoisomerase I (EC 5.99.1.2) (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase). THE REACTION CATALYZED BY TOPOISOMERASES LEADS TO THE CONVERSION OF ONE TOPOLOGICAL ISOMER OF DNA TO ANOTHER. MAY PLAY AN IMPORTANT ROLE IN EITHER THE MAINTENANCE OF OR EXPRESSION FROM THE VIRULENCE PLASMID. ITS INFLUENCE ON EXPRESSION COULD BE SPECIFIC TUNING LOCAL SUPERHELICITY OR MORE GENERALLY MODIFYING THE SUPERHELICITY OF THE ENTIRE PLASMID IN RESPONSE TO ENVIRONMENTAL STIMULI THUS COULD BE A FUNDAMENTAL FACTOR INVOLVED IN VIRULENCE. InterPro: Prokaryotic DNA topoisomerase I; High [...]


ensembl_gene_id: azo0096
symbol: smg
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Protein smg homolog, 45% identity (65% similarity) to SwissProt;P30853 43% identity to SwissProt;Q8X8F6,E.coli smg protein. Has PF04361(IPR007456):Protein of unknown function (DUF494);Members of this family of uncharacterised proteins are often named Smg. No signal peptide or TMH reported present; Belongs to the Smg family.


ensembl_gene_id: azo0097
symbol: drpA
gene_biotype: protein_coding
description:
  Putative DNA processing protein DrpA (Smf protein). Homology to drpA of H. influcenzae The SMF family (DNA processing chain A, dprA) are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation InterPro: SMF family Tigerfam: dprA: DNA processing protein DprA,putative Pfam SMF family no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo0098
symbol: azo0098
gene_biotype: protein_coding
description:
  Conseved hypothetical membrane protein. Homology to RSO2271 of R. solanacearum of 36% (trembl|Q8Y3B1(SRS)). Pfam: Lysin motif (SM00257) This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. No signal peptide 1 TMH; Conserved hypothetical protein.


ensembl_gene_id: azo0099
symbol: def1
gene_biotype: protein_coding
description:
  Probable peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.


ensembl_gene_id: azo0100
symbol: fmt
gene_biotype: protein_coding
description:
  Fmt protein; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.


ensembl_gene_id: azo0101
symbol: htpX
gene_biotype: protein_coding
description:
  Putative protease HtpX Homolog to htpX of E. coli of 30% (AAA62779) InterPro: Peptidase family M48 (IPR001915) Pfam: Peptidase family M48 signal peptide TMHs3; Family membership; Belongs to the peptidase M48B family.


ensembl_gene_id: azo0102
symbol: helX
gene_biotype: protein_coding
description:
  Putative thiol:disulfide oxidoreductase. Homology to helX of R. casulata of 35% Periplasmic protein thiol:disulphide oxidoreductase is involved in the biogenesis of c-type cytochromes as well as in disulphide bond formation in some periplasmic proteins. Tigrfam: dsbE: periplasmic protein thiol:disulfide signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo0103
symbol: azo0103
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to SMa0025 of S. meliloti of 46% pir|D95263(SRS). Pfam: Transglutaminase_like Superfamily signal peptide no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0104
symbol: azo0104
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to ebA582 of Azoacrus sp EbN1 (trembl:Q5P8D6). No domains predicted. SignalP reporting signal peptid. no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0105
symbol: tpx
gene_biotype: protein_coding
description:
  Probable thiol peroxidase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Tpx subfamily.


ensembl_gene_id: azo0106
symbol: azo0106
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to an orf of R. palustris (tremblnew|CAE28417). Tigrfam: 2A78: Carboxylate/Amino Acid/Amine Tranporter InterPro: Integral membrane protein DUF6 Pfam: Integral membrane protein DUF6 no signal peptide probable 10 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0107
symbol: azo0107
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.


ensembl_gene_id: azo0108
symbol: azo0108
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to XCC0740 of Xanthomonas campestris of 33% (trembl|Q8PCI6(SRS) Pfam: Glycosyl hydrolases family 2,TIM barrel domain This family contains beta-galactosidase,beta-mannosidase and beta-glucuronidase activities. No TMHs Signal peptide: present; Conserved hypothetical protein.


ensembl_gene_id: azo0109
symbol: yihZ
gene_biotype: protein_coding
description:
  D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family.


ensembl_gene_id: azo0110
symbol: azo0110
gene_biotype: protein_coding
description:
  Probable pirin-related protein; Pirin-like protein. TREMBL:Q8P799: 52% identity,65% similarity. InterPro: DUF209 his region is found the C-terminal half of the Pirin protein. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures. A tomato homologue of human Pirin has been found to be induced during  [...]


ensembl_gene_id: azo0111
symbol: adhA
gene_biotype: protein_coding
description:
  Putative Alcohol dehydrogenase. Homology to adh-HT of B. stearothermophilus (sprot|ADH3_BACST) THERMOSTABLE AND THERMOPHILIC NAD(+)-DEPENDENT ALCOHOL DEHYDROGENASE. BEARS MAINLY AN ETHANOL-DEHYDROGENASE ACTIVITY. CATALYTIC ACTIVITY:An alcohol + NAD(+) = an aldehyde or ketone + NADH. COFACTOR: Binds 2 zinc ions per subunit (By similarity). Pfam: Zinc-binding dehydrogenase Tirgfam: tdh: L-threonine 3-dehydrogenase no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo0112
symbol: gstR1
gene_biotype: protein_coding
description:
  Putative transcriptional regulator. Homology to gstR of R. leguminosarum of 37% (tremble:Q52827). Has PF00126, HTH_1,Bacterial regulatory helix-turn-helix protein, lysR family.IPR000847, HTH_LysR; Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family, the lysR family, groups together a range of proteins, including ampR, catM, catR, cynR, cysB, gltC,iciA, ilvY, irgB, lysR, metR, mkaC, mleR, nahR, nhaR,nodD,  [...]


ensembl_gene_id: azo0113
symbol: gstA
gene_biotype: protein_coding
description:
  Probabe glutathione transferase. Homology to gstA of R. leguminosarum of 58% (sprot:GSTA_RHILE) Conjugation of reduced glutathione to a variety of targets. Pfam: PF02798, GST_N, Glutathione S-transferase, N-terminal domain; PF00043, GST_C, Glutathione S-transferase, C-terminal domain Interpro: IPR004045, GST_Nterm; IPR004046,GST_Cterm; no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo0114
symbol: azo0114
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to bp2124 of B. pertussis of 48% (trembl|Q7VWS5). Pfam: Pyridoxamine 5-phosphate oxidase no signal peptide no TMHs.


ensembl_gene_id: azo0115
symbol: azo0115
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; MaoC protein (Phenylacetic acid degradation protein paaZ). Entry name :- TREMBL:Q8XXS0 Prim. accession # Q8XXS0 InterPro:-IPR002539; MaoC_dehydratas. Pfam:-PF01575; MaoC_dehydratas; 1. Identities = 77/145 (53%) Number of predicted TMHs: 0.


ensembl_gene_id: azo0116
symbol: amn
gene_biotype: protein_coding
description:
  AMP nucleosidase; Catalyzes the hydrolysis of the N-glycosidic bond of AMP to form adenine and ribose 5-phosphate. Involved in regulation of AMP concentrations.


ensembl_gene_id: azo0117
symbol: braF
gene_biotype: protein_coding
description:
  ATP-binding cassette (ABC) transporters are multidomain membrane proteins, responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q8XU49 (72%) and to sprot|BRAF_PSEAE (40%). Pfam: ABC transporter Smart: AAA ATPases; Specificity unclear.


ensembl_gene_id: azo0118
symbol: azo0118
gene_biotype: protein_coding
description:
  ATP-binding cassette (ABC) transporters are multidomain membrane proteins, responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q7W5F6 (63%) and to trembl|Q8U8G7 (59%). Pfam (PF00005): ABC transporter Smart (SM00382): ATPase superfamily; Specificity unclear.


ensembl_gene_id: azo0119
symbol: azo0119
gene_biotype: protein_coding
description:
  ABC transporter substrate binding proteins count to the family of extracellular ligand binding proteins. It is a component of the high affinity amino acid transport system. Similar to trembl|Q8XU51 (58%) and to tremblnew|CAE27314 (45%). Pfam (PF01094): Receptor family ligand binding region SignalP reporting Signal peptide; Specificity unclear.


ensembl_gene_id: azo0120
symbol: azo0120
gene_biotype: protein_coding
description:
  ABC transporter permease protein; Branched-chain amino acid transport system typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system.The integral inner-membrane proteins translocate the substrate across the membrane. Similar to trembl|Q92LQ5 (71%) and to trembl|Q8XU52 (69%). Pfam (PF02653): Binding-system dependent bacterial transporters (araH, livH/limM families) TMHMM reporting eight Tmhelix; Specificity u [...]


ensembl_gene_id: azo0121
symbol: livM1
gene_biotype: protein_coding
description:
  Putative branched-chain amino acid transport permease. Homology to livM of S. typhimurium of 25%. Part of the binding-protein-dependent transport system for branched-chain amino acids. Probably responsible for the translocation of the substrates across the membrane. Pfam: branch-chain amino acid transport system probable signal peptide probable 6 TMHs; Specificity unclear.


ensembl_gene_id: azo0122
symbol: azo0122
gene_biotype: protein_coding
description:
  Probable Fe-S cluster redox enzyme; Region start changed from 140962 to 141091 (129 bases); Belongs to the radical SAM superfamily. RlmN family.


ensembl_gene_id: azo0124
symbol: azo0124
gene_biotype: protein_coding
description:
  Hypothetical secreted protein. no homology to the data bank. no domains predicted signal peptide no TMHs.


ensembl_gene_id: azo0126
symbol: azo0126
gene_biotype: protein_coding
description:
  Conserved hypothetical protein with 74% similarity(57% identity)to Conserved hypothetical protein [Sinorhizobium meliloti]. No Signal peptide reported to be present. No TMH reported to be present. Has PF07045,Protein of unknown function (DUF1330)This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown. TIGRFAM:acolac_sm: acetolactate synthase,small s; Family membership.


ensembl_gene_id: azo0127
symbol: azo0127
gene_biotype: protein_coding
description:
  Hypothetical protein, 40% identity to TrEMBL;Q73S36 Weak Homology with most protein hits in the database. No Domains/Features/Motifs predicted present.


ensembl_gene_id: azo0128
symbol: azo0128
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein, 50% identity (62% similarity) to TrEMBL;Q7NQ67. No domains predicted TMHMM2 reporting 1 TMH's present. No signal peptide reported present; Conserved hypothetical protein.


ensembl_gene_id: azo0129
symbol: tap
gene_biotype: protein_coding
description:
  Putative dipeptide chemoreceptor; The Tap (taxis toward peptides) receptor and the periplasmic dipeptide-binding protein (DBP) of Escherichia coli together mediate chemotactic responses to dipeptides. Similar trembl|Q7P0E0 (32%) and to SWISSPROT:MCPC_SALTY (23%). Pfam(PF00015): Bacterial chemotaxis sensory transducer Pfam (PF00672):HAMP domain TMHMM reporting two TMH. SignalP reporting Signalpeptid; Specificity unclear.


ensembl_gene_id: azo0130
symbol: nahY
gene_biotype: protein_coding
description:
  Putative aromatic hydrocarbon chemotaxis transducer; The ability of bacteria to recognize and swim toward aromatic hydrocarbons is possibly an important prelude to their degradation. In Pseudomonas putida G7,NahY is the receptor required for the chemotaxis to naphthalene. Similar to trembl|Q7NU44 (38%) and to trembl|Q7NY58 (33%). Smart: HAMP domain Pfam (PF00015): Methyl-accepting chemotaxis protein (MCP) signalling domain SignalP reporting Signal Peptide; Specificity unclear.


ensembl_gene_id: azo0131
symbol: dmpI
gene_biotype: protein_coding
description:
  Probable tautomerase lin2709 (EC 5.3.2.2). TREMBL:Q7UE84: 67% identity, 86% similarity InterPro:IPR004370; Taut. ProDom: PD404143 InterPro: 4-oxalocrotonate tautomerase taut: 4-oxalocrotonate tautomerase No signal peptide no TMH's; High confidence in function and specificity.


ensembl_gene_id: azo0132
symbol: azo0132
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family,; Specificity unclear; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: azo0133
symbol: ilvE1
gene_biotype: protein_coding
description:
  Branched-chain-amino-acid transaminase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: azo0134
symbol: ydaM
gene_biotype: protein_coding
description:
  Hypothetical response regulator, TREMBL: trembl|Q7MSI2 (24% Wolinella succinogenes, hypothetical protein ws0414) InterPro: IPR001610 PAC. IPR000014 PAS. IPR001789 Response_reg. IPR000160 GGDEF. Pfam: PF00990 GGDEF domain. PF00072 Response_reg. PF00785 PAC. PF00989 PAS. TIGRFAM: TIGR00254 putative diguanylate cyclase (GGDEF) domain. TIGR00229 PAS domain S-box; Conserved hypothetical protein.


ensembl_gene_id: azo0137
symbol: amiC1
gene_biotype: protein_coding
description:
  Aliphatic amidase expression-regulating protein,AmiC regulates the expression of the inducible aliphatic amidase activity in Pseudomonas aeruginosa. Similar to sprot|AMIC_PSEAE (31%) and to trembl|P74390 (50%).Pfam (PF01094): Receptor family ligand binding region SignalP reporting Signal peptide; Specificity unclear.


ensembl_gene_id: azo0138
symbol: azo0138
gene_biotype: protein_coding
description:
  Conserved hypothetical protein.Similarity to b.subtilis bmru and to synechocystis pcc 6803 sll0036. Identities = 29/85 (34%) Entry name SWISSPROT:YEGS_ECOLI Prim. accession # P76407 InterPro IPR005218; Cons_hypoth147. IPR001206; DAGKc. Pfam PF00781; DAGKc; 1. Prediction: Non-secretory protein Signal peptide probability: 0.00 Number of predicted TMHs: 0.


ensembl_gene_id: azo0139
symbol: cpdA
gene_biotype: protein_coding
description:
  Probable phosphodiesterase; Serine/threonine (S/T) phosphatases catalyse the dephosphorylation of phosphoserine and phosphothreonine residues. In mammalian tissues four different types of PP have been identified and are known as PP1, PP2A, PP2B and PP2C. Except for PP2C, these enzymes are evolutionary related. The catalytic regions of the proteins are well conserved TREMBL:Q7VZQ9: 41% identity, 50% similarity InterPro:IPR004843; M-ppestrase. Pfam:PF00149; Metallophos InterPro: Serine/threonine specific protein phosphatase No transmembrane helices sbcd: exonuclease SbcD; High confidence [...]


ensembl_gene_id: azo0140
symbol: azo0140
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to an orf of Ralstonia eutropha of 61% (ZP_00167955). No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo0141
symbol: gidA
gene_biotype: protein_coding
description:
  Glucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.


ensembl_gene_id: azo0142
symbol: gidB
gene_biotype: protein_coding
description:
  Probable methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.


ensembl_gene_id: azo0143
symbol: parA1
gene_biotype: protein_coding
description:
  ParA family protein; Putative chromosome partitioning protein; High confidence in function and specificity.


ensembl_gene_id: azo0144
symbol: azo0144
gene_biotype: protein_coding
description:
  Probable nucleotidyltransferase; Hypothetical protein MJ0435. trembl:Q8DGT1:51% identity, 64% similarity InterPro: IPR002934; NTP_transf. Pfam: PF01909; NTP_transf_2 No signal peptide (Signal P predicted) No transmembrane helices (TMHMM predicted). hstdl_phs_rel: histidinol phosphatase-r; Specificity unclear.


ensembl_gene_id: azo0145
symbol: azo0145
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to TLL2231 of Thermosynechococcus elongatus of 34% (tremble:Q8DGT2). Signal peptide present. No TMH reported present. Has (IPR008201)PF01934 Protein of unknown function DUF86;The function of members of this family is unknown; Conserved hypothetical protein.


ensembl_gene_id: azo0146
symbol: parB
gene_biotype: protein_coding
description:
  Probable chromosome partitioning protein,; High confidence in function and specificity; Belongs to the ParB family.


ensembl_gene_id: azo0147
symbol: azo0147
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to RS05051 of Ralstonia solanacearum of 45% (trembl|Q8Y1A4(SRS)). TMHMM2 reporting the presence of 26 TMH's. Signal P reporting Signal Peptide present. Coils2 program reporting presence of Coiled coil; Conserved hypothetical protein.


ensembl_gene_id: azo0148
symbol: azo0148
gene_biotype: protein_coding
description:
  Putative acyltransferase family protein; Similar to the Aas bifunctional protein [includes: 2-acylglycerophosphoethanolamine acyltransferase (2-acyl-gpe acyltransferase); acyl-acyl carrier protein synthetase (acyl-acp synthetase)].Plays a role in lysophospholipid acylation. 25% Acyltransferase.IPR000873; AMP-bind. Pfam:PF01553; Acyltransferase; 1.PF00501; AMP-binding; 1. TMhelix:10; Function unclear.


ensembl_gene_id: azo0149
symbol: uxuA
gene_biotype: protein_coding
description:
  Putative mannonate dehydratase; tremblnew|AAR36422:35% identity, 46% similarity EMBL:AE017218; AAR36422.1; TIGR:GSU3030; This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6. Interpro:IPR004628;Man_dehyd SignalP predicted signal peptide present. No. of transmembrane helices: 1 (TMHMM predicted) pyrC_dimer: dihydroorotase homodimeric; Specificity unclear.


ensembl_gene_id: azo0150
symbol: aas
gene_biotype: protein_coding
description:
  AAS bifunctional protein [Includes: 2-acylglycerophosphoethanolamine acyltransferase (2-acyl-GPE acyltransferase); Acyl-acyl carrier protein synthetase (Acyl-ACP synthetase)]. PLAYS A ROLE IN LYSOPHOSPHOLIPID ACYLATION. TRANSFERS FATTY ACIDS TO THE 1-POSITION VIA AN ENZYME-BOUND ACYL-ACP INTERMEDIATE IN THE PRESENCE OF ATP AND MG(2+). ITS PHYSIOLOGICAL FUNCTION IS TO REGENERATE PTDETN FROM 2-ACYL-GPE FORMED BY TRANSACYLATION REACTIONS OR DEGRADATION BY PHOSPHOLIPASE A1, TREMBL:Q8FEA6 (52% identity); SWISSPROT:P31119 (52% identity). Pfam (PF00501): AMP-binding enzyme. Pfam (PF01553): Ac [...]


ensembl_gene_id: azo0152
symbol: azo0152
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to BB4612 of Bordetella bronchiseptica of 37% (trembl|Q7WEM2(SRS)). No domains predicted. signal peptide 3 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0153
symbol: atpB
gene_biotype: protein_coding
description:
  Probable ATP synthase A chain; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.


ensembl_gene_id: azo0154
symbol: atpE
gene_biotype: protein_coding
description:
  Probable ATP synthase C chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: azo0155
symbol: atpF
gene_biotype: protein_coding
description:
  Probable ATP synthase B chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: azo0156
symbol: atpH
gene_biotype: protein_coding
description:
  Putative ATP synthase delta chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family.


ensembl_gene_id: azo0157
symbol: atpA
gene_biotype: protein_coding
description:
  ATP synthase alpha chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.


ensembl_gene_id: azo0158
symbol: atpG
gene_biotype: protein_coding
description:
  Probable ATP synthase gamma chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.


ensembl_gene_id: azo0159
symbol: atpD
gene_biotype: protein_coding
description:
  ATP synthase beta chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.


ensembl_gene_id: azo0160
symbol: atpC
gene_biotype: protein_coding
description:
  Probable ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane.


ensembl_gene_id: azo0161
symbol: azo0161
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to rsc0460 of R. solanacearum of 39% (trembl|Q8Y276(SRS) Pfam: DUF1243 This family consists of a number of hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. no signal peptide no TMHs.


ensembl_gene_id: azo0162
symbol: ubiE1
gene_biotype: protein_coding
description:
  Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).


ensembl_gene_id: azo0163
symbol: azo0163
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to rs04443 of R. solanacearum of 69% (trembl|Q8Y279). Pfam: PF06155,Protein of unknown function (DUF971) Interpro: IPR010376; This family consists of several short bacterial proteins and one sequence (Q8RZ62) from Oryza sativa. The function of this family is unknown. No Signal Peptide. No TMH present.


ensembl_gene_id: azo0165
symbol: phoR
gene_biotype: protein_coding
description:
  Phosphate regulon sensor protein, 3 Signal P reporting signal peptide TMHMM reporting 1 transmembrane helices. MEMBER OF THE TWO-COMPONENT REGULATORY SYSTEM PHOR/PHOB INVOLVED IN THE PHOSPHATE REGULON GENES EXPRESSION. PHOR MAY FUNCTION AS A MEMBRANE-ASSOCIATED PROTEIN KINASE THAT PHOSPHORYLATES PHOB IN RESPONSE TO ENVIRONMENTAL SIGNALS; High confidence in function and specificity.


ensembl_gene_id: azo0166
symbol: azo0166
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to ebA3023 of Azoarcus sp. EbN1 of 61% (trembl:Q5P4D4). No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo0167
symbol: azo0167
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; 55% HIT. Pfam:PF01230; HIT; 1. The Histidine Triad (HIT) motif, His-phi-His-phi-His-phi-phi (phi, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms.


ensembl_gene_id: azo0168
symbol: azo0168
gene_biotype: protein_coding
description:
  Conserved hypothetical glutamine amidotransferases class-II (Gn-AT), YafJ-type. Homology to ebA3026 of Azoarcus sp. EbN1 of 75% (gnl|keqq|eba:ebA3026(KEGG)). Pfam: Glutamine amidotransferases class-II. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has an Ntn hydrolase; Conserved hypothetical protein.


ensembl_gene_id: azo0169
symbol: azo0169
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to bll7463 of B. japonicum of 30% (tremble:Q89DH6). No domains predicted. No TMHs. Signal peptide present; Conserved hypothetical protein.


ensembl_gene_id: azo0170
symbol: gatB
gene_biotype: protein_coding
description:
  glutamyl-tRNA(GLN) amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.


ensembl_gene_id: azo0171
symbol: azo0171
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to an orf of Dechloromonas aromatica of 41% (gi|46141061|ref|ZP_00152875.2|(NBCI ENTREZ)). No domains predicted. Signal P reporting signal peptide present. NO TMH present; Conserved hypothetical protein.


ensembl_gene_id: azo0172
symbol: gatA
gene_biotype: protein_coding
description:
  glutamyl-tRNA(GLN) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).


ensembl_gene_id: azo0173
symbol: gatC
gene_biotype: protein_coding
description:
  glutamyl-tRNA(GLN) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.


ensembl_gene_id: azo0174
symbol: mreB
gene_biotype: protein_coding
description:
  Rod shape-determining protein mreB. INVOLVED IN FORMATION OF THE ROD SHAPE OF THE CELL. MAY ACT AS A NEGATIVE REGULATOR OF FTSI. InterPro: Cell shape determining protein MreB/Mrl mreB: cell shape determining protein; High confidence in function and specificity.


ensembl_gene_id: azo0176
symbol: mreD
gene_biotype: protein_coding
description:
  Rod shape-determining protein mreD. Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins; High confidence in function and specificity.


ensembl_gene_id: azo0177
symbol: pbpA
gene_biotype: protein_coding
description:
  Penicillin-binding protein; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.


ensembl_gene_id: azo0178
symbol: rodA
gene_biotype: protein_coding
description:
  Rod shape-determining protein; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.


ensembl_gene_id: azo0179
symbol: rlpA
gene_biotype: protein_coding
description:
  Lipoprotein; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.


ensembl_gene_id: azo0180
symbol: dacC
gene_biotype: protein_coding
description:
  Probable D-alanyl-D-alanine carboxypeptidase. Homology to dacD of E. coli of 41% (sprot|DACD_ECOLI) Removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors. Pfam: D-alanyl-D-alanine carboxypeptidase signal peptide no TMHs; High confidence in function and specificity; Belongs to the peptidase S11 family.


ensembl_gene_id: azo0181
symbol: daaA
gene_biotype: protein_coding
description:
  D-alanine aminotransferase (EC 2.6.1.21) (D-aspartate aminotransferase) (D-amino acid aminotransferase) (D-amino acid transaminase) (DAAT). Acts on the D-isomers of alanine Leucine aspartate glutamate aminobutyrate norvaline and asparagine (By similarity). InterPro: Aminotransferases class-IV; High confidence in function and specificity.


ensembl_gene_id: azo0182
symbol: azo0182
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to RSC0326 of Ralstonia solanacearum of 53% (tremble:Q8Y2K9) Has PF04359;Protein of unknown function (DUF493);This family includes several proteins of uncharacterised function. InterPro;IPR007454 No Signal Peptdie or TMH present; Belongs to the UPF0250 family.


ensembl_gene_id: azo0183
symbol: lipB
gene_biotype: protein_coding
description:
  LipB protein; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.


ensembl_gene_id: azo0184
symbol: lipA
gene_biotype: protein_coding
description:
  Lipoic acid synthetase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.


ensembl_gene_id: azo0185
symbol: azo0185
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to PP1518 of P. putida of 54% (trembl|Q88MQ2(SRS) No domains predicted Signal P reporting signal peptide present. No TMH reported present; Conserved hypothetical protein.


ensembl_gene_id: azo0186
symbol: rep
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase; Rep helicase is a single-stranded DNA-dependent ATPase involved in DNA replication; it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction.


ensembl_gene_id: azo0187
symbol: azo0187
gene_biotype: protein_coding
description:
  Conserved hypothetical cytochrome c5. Homology to vc0168 of V. cloreae of 38% (tremble: Q9KVH8). This basic c-type monoheme cytochrome has an unusally low redox potential compaired with mitochaondrial cytochrome C. It is reactive with cytochrome c oxidase but not with reductase. Pfam: Cytrochrome C probable signal peptide no TMHs; Family membership.


ensembl_gene_id: azo0189
symbol: yueD
gene_biotype: protein_coding
description:
  Putative benzil reductase. Homology to yueD of B. cereus of 32% (trembl|Q8RJ14). Belongs to the short-chain dehydrogenases/reductases (SDR) family. Transform benzil to (S)-benzion. Interpro: short-chain dehydrogenase/reductase SDR (IPR002198) Pfam: short chain dehydrogenase (PF00106) no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo0190
symbol: azo0190
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to an orf of R. oxalatica of 31% (trembl|Q84ES1). Pfam: 37-kD nucleoid-associaed bacterial protein The Escherichia coli nucleoid contains DNA in a condensed but functional form. Analysis of proteins released from isolated spermidine nucleoids after treatment with DNase I reveals significant amounts of two proteins not previously detected in wild-type Escherichia coli. Partial amino-terminal sequencing has identified them as the products of rdgC and yejK. no signal peptide no TMHs.


ensembl_gene_id: azo0191
symbol: azo0191
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Entry name TREMBL:Q988L8 Prim. accession # Q988L8 InterPro IPR002539; MaoC_dehydratas. Identities = 63/131 (48%) Pfam PF01575; MaoC_dehydratas; 1. Number of predicted TMHs: 0 Probable MaoC protein (Phenylacetic acid degradation protein paaZ).


ensembl_gene_id: azo0192
symbol: apbA1
gene_biotype: protein_coding
description:
  2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.


ensembl_gene_id: azo0193
symbol: trxC1
gene_biotype: protein_coding
description:
  Probable protein-disulfide reductase. Homology with trxC of E. coli of 45% (AAB88587). Participates in various redox reactions through the reversible oxidation of the active center dithiol to a disulfide. InterPro: Thioredoxin Tigrfam: redox_disulf_1: redox-active disulfide Pfam: Thioredoxin no TMHs no signal peptide; Family membership.


ensembl_gene_id: azo0194
symbol: hvrA1
gene_biotype: protein_coding
description:
  Putative trans-acting regulatory protein. Homology to hvrA of R. capsulatus of 27% (sprot|HVRA_RHOCA). The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions (e.g. light). Interpro: Histone -like nucleotide-structuring protein H-Ns (IPR001801) Pfam: H-NS histone family no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo0195
symbol: azo0195
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to CV3728 of Chromobacterium violaceum of 57% (tremble:Q7NRQ2) No domains predicted. No TMHs signal peptide present; Conserved hypothetical protein.


ensembl_gene_id: azo0197
symbol: azo0197
gene_biotype: protein_coding
description:
  Hypothetical membrane protein. No homology to the data bank. No domains predicted. Signal peptide. 1 TMHs.


ensembl_gene_id: azo0198
symbol: pabB
gene_biotype: protein_coding
description:
  Para-aminobenzoate synthase component I (EC 4.1.3.-) (ADC synthase). CATALYZES THE BIOSYNTHESIS OF 4-AMINO-4-DEOXYCHORISMATE (ADC) FROM CHORISMATE AND GLUTAMINE. InterPro: Anthranilate synthase component I and chorismate binding enzyme pabB: para-aminobenzoate synthase component I; Specificity unclear.


ensembl_gene_id: azo0199
symbol: sbcD
gene_biotype: protein_coding
description:
  Exonuclease SbcD, putative; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.


ensembl_gene_id: azo0200
symbol: sbcC
gene_biotype: protein_coding
description:
  Exonuclease SbcC, putative; Nuclease sbcCD subunit C. SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3->5 double strand exonuclease that can open hairpins. It also has a 5 single-strand endonuclease activity (By similarity). sbcc: exonuclease SbcC; High confidence in function and specificity.


ensembl_gene_id: azo0201
symbol: azo0201
gene_biotype: protein_coding
description:
  Arylesterase (EC 3.1.1.2) (Aryl-ester hydrolase) pir:C75401:39% identity, 52% similarity:hydrolase-related protein - Deinococcus radiodurans. IS A BIFUNCTIONAL ENZYME CAPABLE OF BOTH ESTER HYDROLYSIS AND HALOGENATION. ACTS ON MANY PHENOLIC ESTERS. Pfam: PF00561: alpha/beta hydrolase fold (74-271) InterPro: IPR000073: Alpha/beta hydrolase fold IPR000379: Esterase/lipase/thioesterase Pfam:Zn binding dehydrogenase mobB: molybdopterin-guanine dinucleotid; Family membership.


ensembl_gene_id: azo0202
symbol: azo0202
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology only to r01975 of S. meliloti of 31% (trembl|Q92P21). no signal peptide no TMHs.


ensembl_gene_id: azo0203
symbol: azo0203
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein; TREMBL:Q82XH5: 33% identity, 44% similarity InterPro:IPR007404; DUF457. Pfam: PF04307; DUF457 fnt: formate/nitrite transporter Non-secretory protein with signal peptide probability of 0.391 TMHMM predicted 4 transmembrane helices; Conserved hypothetical protein.


ensembl_gene_id: azo0204
symbol: bmpA
gene_biotype: protein_coding
description:
  Probable lipoprotein; Description:abc transporter periplasmic binding protein.This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family Probable CD4+ T cell-stimulating antigen precursor. TREMBL: Q8XXD8: 64% identity, 79% similarity InterPro:IPR003760; Bmp. Pfam: PF02608; Bmp Secretory protein with high signal peptide probablity (Signal P predicted). No. of transmembrane helices: 1 (TMHMM pre [...]


ensembl_gene_id: azo0205
symbol: hipO1
gene_biotype: protein_coding
description:
  Hippurate hydrolase (EC 3.5.1.32) (Benzoylglycine amidohydrolase) (Hippuricase). TREMBL:Q7VUP2: 43% identity, 57% similarity InterPro; IPR002933; Peptidase_M20. InterPro; IPR010168; Pept_M20D_amidh. Pfam; PF01546; Peptidase_M20; 1. TIGRFAMs; TIGR01891; amidohydrolases TIGR00003: copper-ion-binding protein No signal peptide (Signal P predicted) No transmembrane helices present; High confidence in function and specificity.


ensembl_gene_id: azo0207
symbol: azo0207
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to bb1472 of B. bronchiseptica of 46% (trembl|Q7WMC0). Interpro: Protein of unknown function DUF861 (IPR008579). Pfam: Cupin_3 (former DUF861) (PFO5899). This family consists of several proteins which seem to be specific to plants and bacteria. The function of this family is unknown. No signal peptide. No TMHs.


ensembl_gene_id: azo0208
symbol: azo0208
gene_biotype: protein_coding
description:
  Hypothetical protein, 45% identity to TrEMBL;Q7U8P5. Weak Homology with hits. No domains,repeats, motifs or features predicted Present; Function unclear.


ensembl_gene_id: azo0209
symbol: agaE
gene_biotype: protein_coding
description:
  Sarcosine oxidase,subunit beta counts to the FAD dependent oxidoreductases. Similar to trembl|Q88AX8 (49%) and to trembl|Q987J9 (43%). Pfam (PF01266): FAD dependent oxidoreductase Pfam (PF01494): FAD binding domain Pfam (PF00070): Pyridine nucleotide-disulphide oxidoreductase; Function unclear.


ensembl_gene_id: azo0210
symbol: ooxA
gene_biotype: protein_coding
description:
  Putative opine oxidase subunit A. Homology to ooxA of A. tumefaciens of 37% (sprot|OOXA_AGRT4). OXIDATIVE CLEAVAGE OF OCTOPINE INTO L-ARGININE AND PYRUVATE (BY SIMILARITY). InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR001327), NAD-bining site (IPR000205) Pfam: Pyridine nucleotide-disulphide oxidoreductase no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo0212
symbol: prp
gene_biotype: protein_coding
description:
  Probable proline dehydrogenase transcriptional activator. Similar to sprot|PUTR_AGRTU (31% Agrobacterium tumefaciens, proline dehydrogenase transcriptional activator prp or putR) InterPro: IPR000485 HTH_AsnC_lrp. Pfam: PF01037 AsnC family. HTH reporting nucleic acid binding motif; High confidence in function and specificity.


ensembl_gene_id: azo0213
symbol: azo0213
gene_biotype: protein_coding
description:
  Aminotransferase, class III; Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) (78-diamino-pelargonic acid aminotransferase) (DAPA aminotransferase). bioA: adenosylmethionine--8-amino-7-oxononanoate aminotransferase; Specificity unclear; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: azo0214
symbol: azo0214
gene_biotype: protein_coding
description:
  Conserved hypothetical acetyltransferase. Homology to putative acetaltransferase (GNAT family) of P. syringae of 42% (trembl|Q88AY8). Pfam: Acetyltransferase (GNAT) family no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo0215
symbol: aldH
gene_biotype: protein_coding
description:
  Putative aldehyde dehydrogenase (NAD+) (EC 1.2.1.3). Homology to adlH of E. coli of 35% (sprot|DHAL_ECOLI). Aldehyde dehydrogenases (EC: 1.2.1.3 and EC: 1.2.1.5) are enzymes which oxidize a wide variety of aliphatic and aromatic aldehydes using NADP as a cofactor. InterPro: Aldehyde dehydrogenase family (IPR002086) Pfam: Aldehyde dehydrogenase family no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo0216
symbol: hadL
gene_biotype: protein_coding
description:
  Probable 2-haloalkanoic acid dehalogenase (EC 3.8.1.2) (L-2-haloacid dehalogenase) (Halocarboxylic acid halidohydrolase). TREMBL:Q92Y68: 68% identity, 82% similarity These proteins catalyze the hydrolytic dehalogenation of small L-2-haloalkanoic acids to yield the corresponding D-2-hydroxyalkanoic acids [1]. They belong to the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases InterPro:IPR006328; HAD_II. IPR006388; HAD_SF_IA_v2. IPR005834; Hydrolase. Pfam PF00702; Hydrolase rpiB_lacA_lacB: sugar-phosphate isomer No signal peptide No transmembrane helices; High  [...]


ensembl_gene_id: azo0217
symbol: ordL
gene_biotype: protein_coding
description:
  This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase,Sarcosine oxidase beta subunit, D-alanine oxidase, D-aspartate oxidase. Similar to trembl|Q88AY5 (61%) and to sprot|ORDL_ECOLI (32%). Pfam (PF01266): D-amino acid oxidase ProSite (PS50205): NAD binding site; Family membership.


ensembl_gene_id: azo0218
symbol: dppA
gene_biotype: protein_coding
description:
  Part of the ABC transporter complex dppABCD involved in dipeptide import. Similar to the dipeptide periplasmic-binding protein dppA in E.coli. DIPEPTIDE-BINDING PROTEIN OF AN OSMOTIC-SHOCKABLE TRANSPORT SYSTEM. DPPA IS ALSO REQUIRED FOR PEPTIDE CHEMOTAXIS. InterPro: Bacterial extracellular solute-binding protein family 5 Signal peptide; Specificity unclear.


ensembl_gene_id: azo0219
symbol: dppB
gene_biotype: protein_coding
description:
  Putative dipeptide transport system, permease protein; Part of the ABC transporter complex dppABCD involved in dipeptide import. Probably responsible for the translocation of the substrate across the membrane. Similar to the dipeptide permease protein, DppB in E.coli; Specificity unclear.


ensembl_gene_id: azo0220
symbol: dppC
gene_biotype: protein_coding
description:
  ABC transporter, permease protein; Part of the ABC transporter complex dppABCD involved in dipeptide import. Probably responsible for the translocation of the substrate across the membrane. Similar to the dipeptide permease protein, DppC in E.coli; Specificity unclear.


ensembl_gene_id: azo0221
symbol: dppD
gene_biotype: protein_coding
description:
  Putative dipeptide transport system, ATP-binding protein; Part of the ABC transporter complex dppABCD involved in dipeptide import. Similar to the dipeptide transport membrane protein, DppD in E.coli Probably responsible for energy coupling to the transport system; Specificity unclear.


ensembl_gene_id: azo0222
symbol: gabD1
gene_biotype: protein_coding
description:
  Probable succinate-semialdehyde dehydrogenase [NAD(P)+]. Homology to gabD of R. eutropha of 68% (AAF19796). Catalysis of the reaction: succinate semialdehyde + NAD(P)+ + H2O = succinate + NAD(P)H + H+. Pfam: Aldehyde dehydrogenase family no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo0223
symbol: azo0223
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to an orf of Polaromonas sp. JS666 of 34% (ZP_00360285). No domains predicted. No TMHs. Signal peptide present; Conserved hypothetical protein.


ensembl_gene_id: azo0224
symbol: azo0224
gene_biotype: protein_coding
description:
  Hypotethical outer membrane efflux protein. Homology to PA2525 of P. aeruginosa of 25%. signal peptide. no TMHs.


ensembl_gene_id: azo0225
symbol: azo0225
gene_biotype: protein_coding
description:
  Hypothetical secreted protein. No homology to the data bank no domains predicted signal peptide no TMHs.


ensembl_gene_id: azo0226
symbol: azo0226
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to cc1787 of C. crescentus of 30% (trembl|Q9A7D6) no domains predicted signal peptide no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0227
symbol: czcA1
gene_biotype: protein_coding
description:
  Cobalt-zinc-cadmium resistance protein CzcA (cation efflux system protein CzcA). In A.eutrophus has a low cation transport activity for cobalt, it is essential for the expression of cobalt, zinc, and cadmium resistance.Czca and Czcb together would act in zinc efflux nearly as effectively as the complete czc efflux system (czcABC).Belongs to the acrb/acrd/acrf family. 41% similarity to the A.eutrophus CzcA protein. SWISSPROT:CZCA_ALCEU:P13511 InterPro: Heavy metal efflux pump CzcA. InterPro:IPR001036; Acrflvin_res.IPR004763: CzcA. Pfam:PF00873; ACR_tran; 1. InterPro:TIGR00914:Heavy meta [...]


ensembl_gene_id: azo0228
symbol: azo0228
gene_biotype: protein_coding
description:
  Hypothetical protein, 32% identity to TrEMBL;Q82T66 No Signal Peptide/Features/Domains/TMH detected.


ensembl_gene_id: azo0229
symbol: fhuA1
gene_biotype: protein_coding
description:
  In E.coli this receptor binds the ferrichrome-iron ligand. It interacts with the tonB protein, which is responsible for energy coupling of the ferrichrome-promoted iron transport system. Acts as a receptor for bacteriophage T5 as well as T1, phi80 and colicin M. Binding of T5 triggers the opening of a high conductance ion channel. Can also transport the antibiotic albomycin. Signal peptide; Specificity unclear.


ensembl_gene_id: azo0230
symbol: azo0230
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to RPA1846 of R.palustris of 39% (trembl:Q6N8Q7). No domains predicted. No TMHs. Signal peptide present; Conserved hypothetical protein.


ensembl_gene_id: azo0231
symbol: azo0231
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to SO1157 of Shewanella oneidensis of 50% (trembl|Q8EHR0(SRS)). No domains predicted. Signal peptide. 7 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0232
symbol: exbB1
gene_biotype: protein_coding
description:
  Putative biopolymer transport protein ExbB. Homology to exbB of B. pertussis of 35%. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane. PFam: MotA/TolQ/ExbB proton channel family signals peptide most probable 4 TMHs; Family membership.


ensembl_gene_id: azo0233
symbol: exbD1
gene_biotype: protein_coding
description:
  Putative biopolymer transport protein ExbD. ExbD is part of the TonB-dependent transduction complex. The TonB complex uses the proton grandient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane. InterPro: Biopolymer transport protein ExbD/TolR Pfam: Biopolymer transport protein ExbD/TolR no signal peptide probable 1 TMH; Family membership.


ensembl_gene_id: azo0234
symbol: exbD2
gene_biotype: protein_coding
description:
  Putative biopolymer transport protein ExbD. Homology to exbD2 of X. campestris of 36% ExbD is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane. InterPro: Biopolymer transport protein ExbD/TolR Pfam: Biopolymer transport protein ExbD/TolR no signal peptide probable 1 TMH; Family membership.


ensembl_gene_id: azo0235
symbol: azo0235
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to an orf of Rubrivivax gelatinosus of 55% (gi|47575633|ref|ZP_00245668.1|(NBCI ENTREZ)). No domains predicted. No signal peptide. 1 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0236
symbol: add
gene_biotype: protein_coding
description:
  Adenosine deaminase; Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism.


ensembl_gene_id: azo0237
symbol: npd1
gene_biotype: protein_coding
description:
  Putative NAD-dependent deacetylase (EC 3.5.1.-) (Regulatory protein SIR2 homolog). Modulates the activities of several enzymes which are inactive in their acetylated form. Similar to SWISSPROT: sprot|NPD_AERPE (27% Aeropyrum pernix, NpdA or aq_2170) Pfam: PF02146 Sir2 family; High confidence in function and specificity.


ensembl_gene_id: azo0238
symbol: azo0238
gene_biotype: protein_coding
description:
  Hypothetical membrane protein no homology to the data bank no domains predicted no signal predicted 7 TMHs.


ensembl_gene_id: azo0239
symbol: azo0239
gene_biotype: protein_coding
description:
  Hypothetical protein, showing only very low similarity to known proteins (SWISSPROT: sprot|FRAH_ANASP; >10% Anabaena sp., FraH). Important Domains are: Pfam: PF00034 Cytochrome c. SMART: SM00438 ZnF_NFX TMHMM reporting 1 transmembrane helices.


ensembl_gene_id: azo0240
symbol: dctP1
gene_biotype: protein_coding
description:
  Putative ABC transporter periplasmic binding protein, DctP: TRAP dicarboxylate transporter.Binds C4-dicarboxylates; part of the binding-protein- dependent transport system for uptake of c4-dicarboxylates. 28% TRAP_transptDctP. Pfam:PF03480; SBP_bac_7; 1. TIGRFAMs:TIGR00787; dctP; 1. Signal peptide:present. TMhelix:1; Specificity unclear.


ensembl_gene_id: azo0241
symbol: dctQ1
gene_biotype: protein_coding
description:
  DctQ1 protein; C4-dicarboxylate transport system,permease small protein,DctQ. The Dct locus encodes a high-affinity transport system for the C4-dicarboxylates malate,succinate, and fumarate. 22% DctQ. Pfam:PF04290; DctQ; 1. TMHelix:4; High confidence in function and specificity.


ensembl_gene_id: azo0242
symbol: dctM1
gene_biotype: protein_coding
description:
  TRAP-type C4-dicarboxylate transport system, large permease component, DctM.The Dct locus encodes a high-affinity transport system for the C4-dicarboxylates malate,succinate, and fumarate. 34% DctM.IPR000252; DedA.IPR004681; TRAP_transptDctM. Pfam:PF06808; DctM; 1.PF00597; DedA; 1. TIGRFAMs:TIGR00786; dctM; 1. Signal peptide: present. TMhelix:11; Specificity unclear.


ensembl_gene_id: azo0244
symbol: azo0244
gene_biotype: protein_coding
description:
  Membrane fusion protein; HlyD family secretion protein. The secretion of a number of proteins/molecules require the help of members belonging to the ABC transporter family and a membrane fusion protein belonging to the HlyD family, TREMBL:Q8XRL2 (55% identity); SWISSPROT:P31223 (53% identity). Pfam (PF00529): HlyD family secretion protein. SignalP predicting signal peptide. TC (8.A.1): The Membrane Fusion Protein (MFP) Family; Family membership.


ensembl_gene_id: azo0245
symbol: azo0245
gene_biotype: protein_coding
description:
  RND efflux transporter, permease protein; Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer, TREMBL:Q8E8H2 (65% identity); SWISSPROT:P31224 (63% identity). InterPro (IPR001036): Acriflavin resistance protein. InterPro (IPR004764): Hydrophobe/amphiphile efflux-1 HAE1. TIGRFAM (TIGR00915): Hydrophobe/Amphiphile Efflux-1 (HAE1) Family protein. TIGRFAM (TIGR00914): Heavy metal efflux pump, CzcA family. Pfam (PF0 [...]


ensembl_gene_id: azo0246
symbol: oprM1
gene_biotype: protein_coding
description:
  Probable outer membrane efflux protein. Homology to oprM of P. aeruginosa of 57%. Component of an efflux system that confers multidrug or multible antibiotic resistence. Pfam: Outer membrane efflux protein signal peptide no TMHS; Family membership.


ensembl_gene_id: azo0248
symbol: dksA1
gene_biotype: protein_coding
description:
  Probable dnaK suppressor protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.


ensembl_gene_id: azo0249
symbol: azo0249
gene_biotype: protein_coding
description:
  Hypothetical protein. No homology to the data bank. No domains predicted. No signal peptide. No TMHS.


ensembl_gene_id: azo0250
symbol: azo0250
gene_biotype: protein_coding
description:
  Hypothetical flavodoxin reductase. Homology to the N-terminal part of bb4317 of B. bronchisptica of 40% (trembl|Q7WFF6). InterPro: Oxidoreductase FAD and NAD(P)-binding domain ((IPR001433); NADH: cytochrome b5 reductase (CBR) (IPR001834) Pfam: Oxidorectase FAD-binding domain; Oxidoreductase NAD-binding domain no signal peptide no TMHs.


ensembl_gene_id: azo0251
symbol: azo0251
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein, 38% similarity to trEMBL;Q7WDT1,Putative membrane protein [BB4906] [Bordetella bronchiseptica (Alcaligenes bronchisepticus)]. TMHMM2 predicts 6 TMH's present. No signal peptide present; Family membership.


ensembl_gene_id: azo0252
symbol: azo0252
gene_biotype: protein_coding
description:
  Conserved hypothetical protein, 54% identity to TrEMBL;Q9JYD1 Hypothetical protein NMB1644 [NMB1644] [Neisseria meningitidis(serogroup B)]. Has PF00009:Elongation factor Tu GTP binding domain:IPR000795 ProtSyn_GTPbind: This domain contains a P-loop motif, also found in several other families such as Ras, Arf and Myosin_head. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesi [...]


ensembl_gene_id: azo0253
symbol: azo0253
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to MCA0921 of Methylococcus capsulatus of 54% (trembl:Q60AE3). N domains predicted. No TMHs. NO signal peptide.


ensembl_gene_id: azo0254
symbol: azo0254
gene_biotype: protein_coding
description:
  Conserved polysaccharide deacetylase. Homology to rs03397 of R. solanacearum of 62% (trembl|Q8Y2A8). Interpro: Polysaccharide deacetylase (IPR002509). Pfam: Polysaccharide deacetylase (PF01522). The family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase. It also includes chitin deacetylase from yeast, and endoxylanases which hydrolyses glucosidic bonds in xylan. No signal peptide. No TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0255
symbol: azo0255
gene_biotype: protein_coding
description:
  Hypothetical protein. No good homology to the data bank. No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo0256
symbol: azo0256
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to rsc0429 of R. solanacearum of 52% (trembl|Q8Y2A7). Tigrfam: 2A0604s01: protein-export membrane protein signal peptide 10 TMHs; Function unclear.


ensembl_gene_id: azo0257
symbol: azo0257
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).


ensembl_gene_id: azo0258
symbol: azo0258
gene_biotype: protein_coding
description:
  Conserved hypothetical acetyltransferase. Homology to rsc0431 of R. solanacearum of 61% (trembl|Q8Y2A5) Pfam: Bacterial lipid A biosynthesis acetyltransferase no signal peptide no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0259
symbol: azo0259
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to xac 4098 of X. axonapodis of 36% (trembl|Q8PF87). No domains predicted. No signal peptide. No TMHs.


ensembl_gene_id: azo0260
symbol: azo0260
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Entry name:- TREMBL:Q87EI7 InterPro:- IPR000873; AMP-bind. Pfam:- PF00501; AMP-binding; 2. Identity :- 45% Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0.


ensembl_gene_id: azo0261
symbol: azo0261
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to rsc3402 of R. solanacearum of 46% (trembl|Q8Y2A3(SRS)) no domains predicted signal peptide 5 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0262
symbol: azo0262
gene_biotype: protein_coding
description:
  Hypothetical protein; Similar to TREMBL:Q9PFA7 (61% identity); TREMBL:Q87AD9 (61% identity); SWISSPROT:Q7VKH6 (34% identity); Function unclear; ORF1.


ensembl_gene_id: azo0263
symbol: azo0263
gene_biotype: protein_coding
description:
  Probable two-component system histidine kinase; Probable sensor protein,; High confidence in function and specificity.


ensembl_gene_id: azo0265
symbol: azo0265
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to bd0091 of B. bacteriovorus of 52% (tremblnew|CAE77770(SRS)). no domains predicted. signal peptide. no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0266
symbol: azo0266
gene_biotype: protein_coding
description:
  Conserved hypothetical cytochrome b561 family protein. Homology to rsc2354 of R. solanacearum of 43% (trembl|Q8XWW6). Involved in electron transfer from hydrogen to oxygene. Pfam: Nickel-dependen hydrogenase b-type cytochrome no signal peptide probable 4 TMHs; Family membership.


ensembl_gene_id: azo0267
symbol: czcB
gene_biotype: protein_coding
description:
  Putative membrane fusion protein. Homology to cnrb of A. eutrophus of 30% (pir|F47056). Proteins of the MFP family function as auxiliary proteins or 'adaptors',connecting a primary porter in the cytoplasmic membrane of a Gram-negative bacterium with an outer membrane factor protein that serves a porin or channel function in the outer membrane. In A. eutrophus is this protein involved in cobalt and nickel resistance. No domains predicted. No signal peptide No TMHs; Family membership.


ensembl_gene_id: azo0270
symbol: azo0270
gene_biotype: protein_coding
description:
  Hypothetical secreted protein. Homology to cnfc of Ralstonia sp CH34 of 28% (tremblnew|CAB82451(SRS). Pfam: outer membrane protein. Interpro: Type I antifreeze protein (IPR000104). singal peptide. no TMHs.


ensembl_gene_id: azo0271
symbol: azo0271
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to Daro03000974 of Dechloromonas aromatica of 68% (gi|46140980|ref|ZP_00152750.2|(NBCI ENTREZ)). Pfam: Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases; Pfam: B12 binding domain. This domain binds to B12 (adenosylcobamide), it is found in several enzymes, such as glutamate mutase Q05488, methionine synthase Q99707 an [...]


ensembl_gene_id: azo0272
symbol: azo0272
gene_biotype: protein_coding
description:
  Hypothetical protein. No homology to protein of similar size in the data bank. No domains predicted. No signal peptide. No TMHs.


ensembl_gene_id: azo0273
symbol: sigW
gene_biotype: protein_coding
description:
  Putative RNA polymerase sigma factor, Myxococcus xanthus carQ; Alcaligenes eutrophus plasmid pMOL28-encoded cnrH; Escherichia coli fecI; Pseudomonas syringae hrpL; rpoE from Escherichia coli, Salmonella typhimurium and Haemophilus influenzae; Streptomyces coelicolor sigE; and Bacillus subtilis sigma factors sigV, sigX, sigY and sigZ; High confidence in function and specificity; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: azo0274
symbol: azo0274
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to XCC0845 of X. campestris of 30% (trembl|Q8PC89). No domains predicted. Signal peptide. No TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0275
symbol: azo0275
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to CC3220 of Caulobacter crescentus of 34% (trembl|Q9A3I4(SRS)) No domains predicted. Signal Peptide present. NO TMH present; Conserved hypothetical protein.


ensembl_gene_id: azo0276
symbol: azo0276
gene_biotype: protein_coding
description:
  Putative Hypothetical protein. No Good homologous hits in the DB. No domains/features/signal peptide or motifs present.


ensembl_gene_id: azo0277
symbol: azo0277
gene_biotype: protein_coding
description:
  Hypothetical protein. Weak Homology. 39% identity to TrEMBL;Q8EWG7. No domains, repeats, motifs or features present.


ensembl_gene_id: azo0279
symbol: azo0279
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to BB1132 of B.bronchiseptica of 42% (tremble:Q7WNA8). No domains predicted. No Signal peptide or TMH present.


ensembl_gene_id: azo0280
symbol: azo0280
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to rs03062 of R. solanacearum of 48% (tremble:Q8XQ05) no domains predicted signal peptide 2 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0281
symbol: azo0281
gene_biotype: protein_coding
description:
  Outer membrane protein A precursor. Homology with hypothetical transmembrane protein and probable outer membrane protein of 56% as well as with motB (flagellar motor protein B) from amino acid 84 of 34%. Pfam: OmpA no signal peptide probable 1 TMH; Conserved hypothetical protein.


ensembl_gene_id: azo0282
symbol: azo0282
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to RS03060 of R.solanacearum of 35% (tremble:Q8XQ03) No domains predicted. No signal peptide or TMH present.


ensembl_gene_id: azo0283
symbol: azo0283
gene_biotype: protein_coding
description:
  Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no TMHs. no signal peptide.


ensembl_gene_id: azo0284
symbol: azo0284
gene_biotype: protein_coding
description:
  Putative Beta-ketoacyl synthase family protein; Pfam (PF02801): Beta-ketoacyl synthase, C-terminal domain. Pfam (PF00109): Beta-ketoacyl synthase, N-terminal domain; Function unclear; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: azo0285
symbol: azo0285
gene_biotype: protein_coding
description:
  Conserved hypothetical acyl carrier protein. Homology to psptO5093 of P. syringae of 44% (trembl|Q87V48). Interpro: Phosphopanteteine-binding (IPR00613). Pfam: Phosphopantetheine attachment site (PF00550) Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. Tigrfam: acyl_carrier: acyl carrier protein. no signal peptide. no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0286
symbol: azo0286
gene_biotype: protein_coding
description:
  Putative ABC transporter permease; Similar to TREMBL:Q7NFQ1 (27% identity); TREMBL:Q97E48 (20% identity); TREMBL:Q8FWI9 (21% identity). TMHMM predicting six transmembrane helices. TC (2.A.6.2): The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Specificity unclear.


ensembl_gene_id: azo0287
symbol: vapC
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.


ensembl_gene_id: azo0289
symbol: azo0289
gene_biotype: protein_coding
description:
  ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs, TREMBL:Q8R788 (35% identity); TREMBL:Q81S77 (37% identity). InterPro (IPR003439): ABC transporter. InterPro (IPR003593): AAA ATPase. InterPro (IPR001687): ATP/GTP-binding site motif A (P-loop). Pfam (PF00005): ABC transpor [...]


ensembl_gene_id: azo0290
symbol: azo0290
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to Daro03001929 of Dechloromonas aromatica of 68% (gi|53730629|ref|ZP_00348881.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo0291
symbol: azo0291
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to Daro03001928 of Dechloromonas aromatica of 59% (gi|41724574|ref|ZP_00151411.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo0292
symbol: darB
gene_biotype: protein_coding
description:
  3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41) (Beta- ketoacyl-ACP synthase III) (KAS III). Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and/or straight-chain of fatty acids (By similarit [...]


ensembl_gene_id: azo0293
symbol: darA
gene_biotype: protein_coding
description:
  Probable dialkylrecorsinol condensing enzyme. Homology to darA of P. aurantiaca of 56% (trembl|Q84H30(SRS)) no domains predicted no signal peptide 1 TMHs; Family membership.


ensembl_gene_id: azo0294
symbol: azo0294
gene_biotype: protein_coding
description:
  Putative penicillin-binding protein; INVOLVED IN CELL WALL BIOSYNTHESIS AND MAY ALSO ACT AS A SENSOR OF EXTERNAL PENICILLINS, TREMBL:Q7UMP8 (30% identity); TREMBL:Q988N4 (27% identity); Family membership.


ensembl_gene_id: azo0295
symbol: azo0295
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to CV2374 of C.violaceum of 31% (tremble:Q7NVG9). No domains predicted. No signal peptide or TMH present.


ensembl_gene_id: azo0296
symbol: azo0296
gene_biotype: protein_coding
description:
  InterPro:IPR001279- Metallo-beta-lactamase superfamily,glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid. TREMBL:Q7WEK1-55% Identity. Pfam-Presence of phosphoribosyltransferase, tissue factor, and GMP reductaseC like domains Signal P predicting signal peptide and TMHMM predicting transmembrane helices. ccoP: cytochrome c oxidase cbb3-type s; High confidence in function and specificity.


ensembl_gene_id: azo0297
symbol: azo0297
gene_biotype: protein_coding
description:
  Conserved hypothetical protein, 66% similarity to TrEMBL; Q6NA86. Signal peptide present. No TMH reported present.


ensembl_gene_id: azo0298
symbol: paaY
gene_biotype: protein_coding
description:
  Probable phenyl acetic acid degradation protein; Pathway:carnitine metabolism (conversion of carnitine to gamma-butyrobetaine). TREMBL:Q9F9V3: 71% identity, 83% similarity similarity:belongs to the transferase hexapeptide repeat family Carnitine operon protein caiE. InterPro:IPR001451; Hexapep_transf. Pfam:PF00132; Hexapep InterPro: Bacterial transferase hexapeptide repeat TIGR00094: conserved hypothetical protein; High confidence in function and specificity.


ensembl_gene_id: azo0299
symbol: paaZ
gene_biotype: protein_coding
description:
  Conserved hypothetical dehydrogenase. Homology to paaZ of A. evansii of 83% (trembl|Q9F9V2). Pfam: Aldehyde dehydrogenase family no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo0300
symbol: paaG1
gene_biotype: protein_coding
description:
  Probable enoyl-CoA hydratase. Homology to paaG of E. coli of 60% (sprot|PAAG_ECOLI(SRS) COULD POSSIBLY OXIDIZES FATTY ACIDS USING SPECIFIC COMPONENTS (BY SIMILARITY). Activity:- (3S)-3-hydroxyacyl-CoA = trans-2(or 3)-enoyl-CoA + H2O. Interpro: Enoyl-CoA hydratase/isomerase (IPR001753) Pfam: Enoyl-CoA hydratase/isomerase no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo0301
symbol: paaH1
gene_biotype: protein_coding
description:
  Probable 3-hydroxybutyryl-CoA dehydrogenase; Activity:-3-acetoacetyl-CoA + NADPH = (S)-3-hydroxybutanoyl-CoA + NADP+ Entry name TREMBL:Q9F9V1 InterPro IPR006108; 3HCDH_C. IPR006176; 3HCDH_N. IPR008927; 6DGDH_C_like. IPR002110; ANK. IPR000205; NAD_BS. Pfam PF00725; 3HCDH; 2. PF02737; 3HCDH_N; 1. Identities = 344/510 (67%) Prediction: Signal peptide Signal peptide probability: 0.660 Number of predicted TMHs: 1; High confidence in function and specificity.


ensembl_gene_id: azo0302
symbol: paaI
gene_biotype: protein_coding
description:
  Phenylacetic acid degradation protein PaaI; Phenylacetic acid aerobic catabolism. Similar to TREMBL:Q9F9V0 (74% identity); SWISSPROT:P76084 (48% identity). InterPro (IPR003736): Phenylacetic acid degradation-related protein. Pfam (DUF157): Uncharacterized protein PaaI, COG2050; High confidence in function and specificity.


ensembl_gene_id: azo0303
symbol: paaK
gene_biotype: protein_coding
description:
  Phenylacetate--CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).


ensembl_gene_id: azo0304
symbol: paaA
gene_biotype: protein_coding
description:
  Phenylacetic acid degradation protein [paaA],86% identity(91% similarity) to TrEMBL;Q9F9U9. 72% identity to TrEMBL;Q7WGX6, Q8XS77 Has PF05138, Phenylacetic acid catabolic protein;IPR007814, PaaA_PaaC; This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid. These proteins may form part of a dioxygenase complex. No Signal Peptide or TMH present; High confidence in function and specificity.


ensembl_gene_id: azo0305
symbol: paaB
gene_biotype: protein_coding
description:
  Phenylacetic acid degradation protein PaaB; May be part of a multicomponent oxygenase involved in phenylacetyl-coa hydroxylation. Phenylacetic acid aerobic catabolism pathway, TREMBL:Q8XS76 (75% identity); SWISSPROT:P76078 (61% identity); High confidence in function and specificity.


ensembl_gene_id: azo0306
symbol: paaC
gene_biotype: protein_coding
description:
  Probable phenylacetic acid degradation protein PaaC. Homology to paaI of P. putida of 46% (trembl|O84983). Part of a catabolic pathway of phenylacetic acid. These proteins forms part of a dioxygenase complex. Interpro: Phenylacetic acid catabolic (IPR007814) Pfam: Phenylacetic acid catabolic protein (PF05138) no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo0307
symbol: paaD
gene_biotype: protein_coding
description:
  Probable pheylacetic acid degradation protein PaaD. Homology to phaH of P. putida of 54% (trembl|Q88HS8) Interpro: Protein of unknown function DUF59 (IPR002744) Pfam: Domain of unknoen function DUF59 (PF01883). Domain of unknown function DUF59;IPR002744; This family includes prokaryotic proteins of unknown function. The family also includes PhaH O84984 from Pseudomonas putida. PhaH forms a complex with PhaF O84982, PhaG O84983 and PhaI O84985,which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid. So members of this family may all be components of ring hydroxylating complex [...]


ensembl_gene_id: azo0308
symbol: paaE
gene_biotype: protein_coding
description:
  Probable phenylacetic acid degradation NADH oxidoreductase paaE. Homology to paaE of E. coli of 50% (sprot|PAAE_ECOLI). Probable PART OF A MULTICOMPONENT OXYGENASE involved in aerobic degradation of phenylacetic acid. InterPro: Oxidoreductase FAD and NAD(P)-binding domain(IPR001433); 2Fe-2S Ferredoxin (IPR006057); Ferredoxin (IPR001041); NADH: cytochrome b5 reductase (CBR) (IPR001834) Pfam: Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain; 2Fe-2S iorn-sulfur cluster binding domain no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo0310
symbol: paaJ1
gene_biotype: protein_coding
description:
  THIOLYTIC CLEAVAGE OF BETA-KETOADIPYL-COA TO SUCCINATE AND ACETYL-COA. Entry name:- TREMBL:Q84HH5 InterPro:- IPR002155; Thiolase. Pfam:- PF02803; Thiolase_C; 1. PF00108; Thiolase_N; 1. Identities = 298/398 (74%) Number of predicted TMHs: 0; High confidence in function and specificity; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: azo0311
symbol: azo0311
gene_biotype: protein_coding
description:
  ABC transporter substrate binding proteins count to the family of extracellular ligand binding proteins. It is a component of the high affinity amino acid transport system. Similar to trembl|Q8XU64 (71%) and to sprot|LIVJ_ECOLI (16%). Pfam (PF01094): Receptor family ligand binding region SignalP reporting Signal peptide; Specificity unclear.


ensembl_gene_id: azo0312
symbol: azo0312
gene_biotype: protein_coding
description:
  ABC transporter permease protein; Branched-chain amino acid transport system typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system.The integral inner-membrane proteins translocate the substrate across the membrane. Similar to trembl|Q7W5E8 (62%), to sprot|BRAD_PSEAE (25%) and to sprot|LIVH_ECOLI (26%). Pfam (PF02653): Branched-chain amino acid transport system / permease component TMHMM reporting nine Tmhe [...]


ensembl_gene_id: azo0313
symbol: azo0313
gene_biotype: protein_coding
description:
  ATP-binding cassette (ABC) transporters are multidomain membrane proteins, responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. The integral inner-membrane proteins translocate the substrate across the membrane. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q8XRX5 (54%) and to trembl|Q8UFI6 (47%). Pfam: ABC transporter Pfam (PF02653): Branched-chain amino acid transport system / permease component Smart : AAA ATPase SignalP reporting Signal pept [...]


ensembl_gene_id: azo0314
symbol: azo0314
gene_biotype: protein_coding
description:
  ATP-binding cassette (ABC) transporters are multidomain membrane proteins, responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q8XRX4 (68%) and to trembl|Q7WCY5 (63%). Smart: AAA ATPases; Specificity unclear.


ensembl_gene_id: azo0315
symbol: hupB
gene_biotype: protein_coding
description:
  DNA-binding protein HU (DNA-binding protein II); Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.


ensembl_gene_id: azo0317
symbol: nusB
gene_biotype: protein_coding
description:
  Putative N utilization substance protein B; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.


ensembl_gene_id: azo0318
symbol: ribH
gene_biotype: protein_coding
description:
  Riboflavin synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.


ensembl_gene_id: azo0319
symbol: ribAB
gene_biotype: protein_coding
description:
  GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.


ensembl_gene_id: azo0320
symbol: ribE
gene_biotype: protein_coding
description:
  Riboflavin synthase alpha chain (EC 2.5.1.9). Riboflavin synthase is a bifunctional enzyme complex catalyzing the formation of riboflavin from 5-amino-6-(1-D)- ribityl-amino-24(1H3H)-pyrimidinedione and L-34-dihydrohy-2- butanone-4-phosphate via 67-dimethyl-8-lumazine. The alpha subunit catalyzes the dismutation of 67-dimethyl-8-lumazine to riboflavin and 5-amino-6-(1-D)-ribityl-amino-24(1H3H)- pyrimidinedione. ribE: riboflavin synthase alpha subunit; High confidence in function and specificity.


ensembl_gene_id: azo0321
symbol: cutA2
gene_biotype: protein_coding
description:
  Putative protein disulfide-isomerase; Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps. Belongs to the thioredoxin family. DsbD subfamily.


ensembl_gene_id: azo0322
symbol: cutA1
gene_biotype: protein_coding
description:
  Periplasmic divalent cation tolerance protein .36% similarity to E.coli CutA1 protein involved in copper tolerance. InterPro:IPR004323; CutA1. Pfam:PF03091; CutA1; 1; High confidence in function and specificity.


ensembl_gene_id: azo0323
symbol: naoA
gene_biotype: protein_coding
description:
  2-nitropropane dioxygenase; TREMBL:Q7MBF3: 80% identity, 89% similarity InterPro:IPR004136; 2nprop_dioxygen. IPR003009; FMN_enzyme. Pfam: PF03060; NPD tim: triosephosphate isomerase Non-secretory protein with no signal peptide. TMHMM predicted no transmembrane helices.; High confidence in function and specificity.


ensembl_gene_id: azo0324
symbol: azo0324
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to GSU0176 of G.sulfurreducens of 42% (tremble:Q74GR9) No domains predicted. No signal peptide or TMH reported present.


ensembl_gene_id: azo0325
symbol: azo0325
gene_biotype: protein_coding
description:
  Putative flavocytochrome protein. 48% FAD_binding_6.IPR001433; Oxred_FAD/NAD(P). Pfam:PF00970; FAD_binding_6; 1.PF00175; NAD_binding_1; 1. TMhelix: 6. Siganl peptide: present; Function unclear.


ensembl_gene_id: azo0326
symbol: azo0326
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to cv0811 of C. violaceum of 43% (trembl|Q7NPT0(SRS) no domains predicted no signal peptide no TMHs.


ensembl_gene_id: azo0328
symbol: livK1
gene_biotype: protein_coding
description:
  Putative leucine-specific binding protein; In enteric bacteria such as E. coli and Salmonella typhimurium, periplasmic binding proteins are found to participate in the transport of amino acids, sugars and ions. Leucine-specific binding protein are coded by livK and livJ. Similar to sprot|LIVK_SALTY (23%) and to trembl|Q8XUX2 (46%). Pfam (PF01094): Receptor family ligand binding region SignalP reporting Signal peptide; Specificity unclear.


ensembl_gene_id: azo0329
symbol: azo0329
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to SCO5300 of Streptomyces coelicolor of 46% (tremble:Q9XAE9). No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo0330
symbol: blaA
gene_biotype: protein_coding
description:
  Probable transcriptional regulator, LysR family; HTH-type transcriptional regulator blaA (Beta-lactamase regulatory protein blaA). Positive regulator of the expression of the gene (blab) for beta-lactamase. Similar to SWISSPROT: sprot|BLAA_PROVU (32% Proteus vulgaris, HTH-type transcriptional regulator BlaA) InterPro: IPR000847 HTH_LysR. IPR009058 Winged helix DNA-binding. Pfam: PF00126 Bacterial regulatory helix-turn-helix protein, lysR family. HTH reporting nucleic acid binding motif; High confidence in function and specificity.


ensembl_gene_id: azo0331
symbol: azo0331
gene_biotype: protein_coding
description:
  Conserved hypothetical protein, 41% similarity to TrEMBL;Q88JC7. Has IPR005544 DUF_HHE:PF03794;Domain of Unknown function:This domain normally occurs as tandem repeats and is found in bacteria, yeast and plants. It contains two fully conserved histidines and one glutamate residue. Members of the family include DnrN, NorA and ScdA, which have been implicated in NO response and cell wall physiology. Has no Signal peptide or TMH reported present.


ensembl_gene_id: azo0332
symbol: azo0332
gene_biotype: protein_coding
description:
  Putative esterase; Hypothetical protein yqhO. This family consists of various patatin glycoproteins from the total soluble protein in potato tubers.Patatin is a storage protein but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids SPROT:P54513: 23% identity, 33% similarity SubtiList: BG11703; yqhO. InterPro:IPR002641; Patatin. Pfam:PF01734; Patatin No signal peptide TMHMM predicted 2 transmembrane helices mobB: molybdopterin-guanine dinucleot; Family membership.


ensembl_gene_id: azo0333
symbol: azo0333
gene_biotype: protein_coding
description:
  Putative esterase; Hypothetical protein Rv1063c/MT1093/Mb1092c. TREMBL:Q89EP5: 29% identity, 42% similarity InterPro:IPR002641; Patatin. Pfam:PF01734; Patatin 2A0108: nitrate transporter Absence of signal peptide No. of TMH's: 2 (TMHMM predicted); Family membership.


ensembl_gene_id: azo0334
symbol: azo0334
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to BPP2140 of Bordetella parapertussis 0f 44% (trembl|Q7W8J3(SRS)) No domains predicted. Signal peptide present. No TMH present. 6PTHBS: 6-pyruvoyl tetrahydrobiopterin; Conserved hypothetical protein.


ensembl_gene_id: azo0335
symbol: azo0335
gene_biotype: protein_coding
description:
  EAL-domain containing protein, ):This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function [1]. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site; Conserved hypothetical protein.


ensembl_gene_id: azo0336
symbol: azo0336
gene_biotype: protein_coding
description:
  PAS/PAC/GGDEF-domain containing protein, suggesting involvement into signalling processes. Similarity to SWISSPROT: sprot|YDAM_ECOLI (24% Escherichia coli, hyp. protein) / TREMBL: trembl|Q887F0 (59% Pseudomonas syringae, hyp. protein) Pfam: PF00990 GGDEF domain. This domain is found linked to a wide range of non-homologous domains in a variety of bacteria. The function of this domain is unknown, however it has been shown to be homologous to the adenylyl cyclase catalytic domain. This prediction correlates with the functional information available on two GGDEF-containing proteins, namel [...]


ensembl_gene_id: azo0337
symbol: azo0337
gene_biotype: protein_coding
description:
  Probable hypothetical Protein. Extremely weak homology with hits in the PDB. No Motif/Features/TMH/ or Signal peptide present.


ensembl_gene_id: azo0338
symbol: pstS1
gene_biotype: protein_coding
description:
  Putative phosphate-binding periplasmic protein; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.


ensembl_gene_id: azo0339
symbol: azo0339
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to an orf of Acinetobacter sp. (strain ADP1) of 43% (tremble:Q6F6W4). no domains predicted. signal peptide. 1 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0340
symbol: azo0340
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. No homology to the data bank No domains predicted No signal peptide 2 TMHs.


ensembl_gene_id: azo0341
symbol: azo0341
gene_biotype: protein_coding
description:
  Putative cytochrome c'. Homology to cytochrome c of R. gelatineosus (sprot|CYCP_RHOGE). CYTOCHROME C IS THE MOST WIDELY OCCURRING BACTERIAL C-TYPE CYTOCHROME. CYTOCHROMES C ARE HIGH-SPIN PROTEINS AND THE HEME HAS NO SIXTH LIGAND. THEIR EXACT FUNCTION IS NOT KNOWN. InterPro: Cytochrome c class II (IPR002321) Pfam: Cytochrome C probable signal peptide no TMHs; Function unclear.


ensembl_gene_id: azo0342
symbol: nhoA
gene_biotype: protein_coding
description:
  N-hydroxyarylamine O-acetyltransferase; Belongs to the arylamine n-acetyltransferase family. Arylamine N-acetyltransferase is a cytosolic enzyme of approximately 30kDa. It facilitates the transfer of an acetyl group from Acetyl Coenzyme A on to a wide range of arylamine, N-hydroxyarylamines and hydrazines. Similar to TREMBL:Q98D42 (47% identity); TREMBL:Q8FHI6 (39% identity); SWISSPROT:P77567 (39% identity). InterPro (IPR001447): N-acetyltransferase Pfam (PF00797): N-acetyltransferase; High confidence in function and specificity.


ensembl_gene_id: azo0343
symbol: parA2
gene_biotype: protein_coding
description:
  Probable ParA family protein; Sporulation initiation inhibitor protein soj. INHIBITS THE INITIATION OF SPORULATION SPO0J ANTAGONIZES THIS INHIBITION. SOJ ULTIMATELY INHIBITS THE ACTIVATION (PHOSPHORYLATION) OF SPO0A. IT IS NOT REQUIRED FOR CHROMOSOME PARTITIONING. InterPro: ParA family ATPase; Function unclear.


ensembl_gene_id: azo0346
symbol: azo0346
gene_biotype: protein_coding
description:
  Putative Na+/H+ antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.


ensembl_gene_id: azo0347
symbol: azo0347
gene_biotype: protein_coding
description:
  Hypothetical secreted protein. No homology to the data bank. No domains predicted. Signal P reporting Signal Peptide present. No TMH reported Present.


ensembl_gene_id: azo0348
symbol: azo0348
gene_biotype: protein_coding
description:
  4-hydroxybenzoate octaprenyltransferase; Prenyltransferase family protein. InterPro: UbiA prenyltransferase; Specificity unclear; Belongs to the UbiA prenyltransferase family.


ensembl_gene_id: azo0349
symbol: azo0349
gene_biotype: protein_coding
description:
  Putative Small Multi-Drug resistant(SMR)family protein, 30% identical to TrEMBL;Q8XZS2. Has PF00893,Small Multidrug Resistance protein;IPR000390, Smr:This family is the Small Multidrug Resistance (SMR) family. Several members have been shown to export a range of toxins, including ethidium bromide and quaternary ammonium compounds, through coupling with proton influx.


ensembl_gene_id: azo0350
symbol: azo0350
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to gll2146 of G. violaceus of 44% (trembl|Q7NIN7(SRS)) no domains predicted signal peptide no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0351
symbol: nodJ
gene_biotype: protein_coding
description:
  ABC transporter permease NodJ; Forms with NodI a membrane transport complex involved in the nodulation process. it probably exports a modified beta-1,4-linked n-acetylglucosamine oligosaccharide. Belongs to the ABC-2 integral membrane protein family, TREMBL:Q7WHD1 (49% identity); SWISSPROT:O52619 (49% identity). InterPro (IPR000412): ABC transporter, family 2. Pfam (PF01061): ABC-2 type transporter. TMHMM reporting six transmembrane helices. TC (3.A.1.102): The Lipooligosaccharide Exporter (LOSE) Family; High confidence in function and specificity.


ensembl_gene_id: azo0352
symbol: azo0352
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to mvpT of E. carotovora of 44% (trembl:Q6D393) No domains predicted. No TMHs No signal peptide.


ensembl_gene_id: azo0353
symbol: azo0353
gene_biotype: protein_coding
description:
  Hypothetical protein predicted by Glimmer/Critica. No homology to the data bank. No domains predicted. No signal peptide No TMHs.


ensembl_gene_id: azo0354
symbol: azo0354
gene_biotype: protein_coding
description:
  Putative methylase; Region start changed from 377491 to 377176 (315 bases); Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.


ensembl_gene_id: azo0355
symbol: azo0355
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to lpg1234 of L.pneumophila of 42% (gnl|keqq|lpn:lpg1234(KEGG)). Has PF04471, Restriction endonuclease;IPR007560, Mrr_cat; Prokaryotic family found in type II restriction enzymes containing the hallmark (D/E)-(D/E)XK active site. Presence of catalytic residues implicates this region in the enzymatic cleavage of DNA. No TMHs. No signal peptide.


ensembl_gene_id: azo0356
symbol: vsr
gene_biotype: protein_coding
description:
  Putative hypothetical very short patch repair endonuclease. Homology to vrs of E. coli of 29% (sprot|VSR_ECOLI) All proteins in this family for which functions are known are G:T mismatch endonucleases that function in a specialized mismatch repair process used usually to repair G:T mismatches in specific sections of the genome. Interpro: DNA mismatch endonuclease vsr (IPR004603) Pfam: DNA mismatch endonuclease Vsr Tigrfam: vsr: DNA mismatch endonuclease no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo0359
symbol: azo0359
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to MS2110 of M.succiniciproducens of 40% (gi|52426165|ref|YP_089302.1|(NBCI ENTREZ)). No domains predicted. No signal peptide. 1 TMHs; Family membership.


ensembl_gene_id: azo0360
symbol: nodI
gene_biotype: protein_coding
description:
  Nod factor export ATP-binding protein. Part of the ABC transporter complex nodIJ (TC 3.A.1.102.1) involved in the export of LCO (lipo-chitin oligosaccharide) and a modified beta-14-linked N- acetylglucosamine oligosaccharide. Responsible for energy coupling to the transport system, TREMBL:Q7W9D3 (58% identity); SWISSPROT:O52618 (53% identity). InterPro (IPR003439): ABC transporter. InterPro (IPR001687): ATP/GTP-binding site motif A (P-loop). InterPro (IPR003593): AAA ATPase. Pfam (PF00005): ABC transporter. TC (3.A.1.102) The Lipooligosaccharide Exporter (LOSE) Family; High confidence  [...]


ensembl_gene_id: azo0361
symbol: azo0361
gene_biotype: protein_coding
description:
  Conserved hypothetical glutathione S-transferase protein. Homology to cv3306 of C. violaceum of 50% (trembl|Q7NSW3). Conjugation of reduced glutathione to a variety of targets. Pfam: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain. no signal peptide. no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0362
symbol: azo0362
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to rsc0328 of R. solanacearum of 59% (trembl|Q8Y2K7). Pfam: Prolyl oligopeptidas family no signal peptide no TMHs.


ensembl_gene_id: azo0363
symbol: fer21
gene_biotype: protein_coding
description:
  Putative ferredoxin 2fe-2s protein. Homology to fer2 of C. pasteruianum of 35% (sprot|FER2_CLOPA). Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo0364
symbol: azo0364
gene_biotype: protein_coding
description:
  Conserved hypothtical membrane protein. Homology to rc03284 of R. solanacearum of 35% (trembl|Q8Y2L8(SRS) Has a weak hit to PF04892(IPR006976;vanZ)in Smart:This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases. VanZ confers low-level resistance to the glycopeptide antibiotic teicoplanin (Te). Analysis of cytoplasmic peptidoglycan precursors, accumulated in the presence of ramoplanin,showed that VanZ-mediated Te resistance does not involve incorporation of a substituent of D-alanine into the peptidoglycan precursors. no signal p [...]


ensembl_gene_id: azo0365
symbol: azo0365
gene_biotype: protein_coding
description:
  Conserved Hypothetical protein, Q82Y48,Rhodanese type protein. Has SMART SM00450 Rhodanese Homology Domain(RHOD)starting at position 47-153aa;Rhodanese, a sulfurtransferase involved in cyanide detoxification (see IPR001307) shares evolutionary relationship with a large family of proteins. No Signal peptide or TMH reported Present; Family membership.


ensembl_gene_id: azo0366
symbol: srpH
gene_biotype: protein_coding
description:
  Probable serine O-acetyltransferase plasmid (EC 2.3.1.30) (SAT). Homology to srpH of Synechococcus of 55% (sprot|SRPH_SYNP7) no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo0368
symbol: mmpI
gene_biotype: protein_coding
description:
  Probable immunodominant 35 kDa protein. Homology to mmpI of Mycobacterium avium of 69% (gi|2498566|sp|Q48899|MMP1_MYCAV(SwissProt (ExPASy)). No domains predicted. No signal peptide. No TMHs.,; High confidence in function and specificity.


ensembl_gene_id: azo0369
symbol: csdB
gene_biotype: protein_coding
description:
  Cysteine desulphurases required for the mobilization of sulphur from cysteine. They are present in all organisms, where they are involved in iron-sulphur (Fe-S) cluster biosynthesis. Similar to sprot|CSD1_MYCLE (54%), to trembl|Q82WT8 (55%) and to tremblnew|BAB21542 (34%). Pfam (PF00266): Aminotransferase class-V Pfam (PF01041): DegT/DnrJ/EryC1/StrS aminotransferase family; Function unclear.


ensembl_gene_id: azo0370
symbol: azo0370
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to NE2493 of Nitrosomonas europaea of 67% (trembl|Q82S65(SRS)). Has PF01169, Uncharacterized protein family UPF0016;IPR001727; This family contains integral membrane proteins of unknown function. Most members of the family contain two copies of a region that contains an EXGD motif. No signal peptide. 5 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0371
symbol: azo0371
gene_biotype: protein_coding
description:
  Hypothetical secreted protein. No homology to the data bank. No domains predicted. No TMHs. Signal peptide present.


ensembl_gene_id: azo0372
symbol: azo0372
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Entry name SWISSPROT:YHBT_ECOLI Prim. accession # P45474 InterPro IPR003033; SCP2. Pfam PF02036; SCP2; 1. Prediction: Non-secretory protein Signal peptide probability: 0.001 Number of predicted TMHs: 0 Identities = 46/107 (42%).


ensembl_gene_id: azo0373
symbol: azo0373
gene_biotype: protein_coding
description:
  Conserved hypothetical peptidase. Homology to Rsp0969 of R. solanacearum of 51% (trembl|Q8XR90). Pfam: Peptidas family U32 no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo0374
symbol: azo0374
gene_biotype: protein_coding
description:
  Conserved hypothetical peptidase. Homology to cv4084 of C. violaceum of 64% (trembl|Q7NQQ39. Pfam: Peptidas family U32 no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo0375
symbol: azo0375
gene_biotype: protein_coding
description:
  probABLE SODIUM/SOLUTE SYMPORTER TRANSMEMBRANE protein; TREMBL:Q8Y273: 59% identity, 72% similarity Osmoregulated proline transporter (Sodium/proline symporter). CATALYZES THE SODIUM-DEPENDENT UPTAKE OF EXTRACELLULAR PROLINE. InterPro: Sodium:solute symporter family InterPro:IPR001734; Na/solut_symport. Pfam:PF00474; SSF; TMHMM predicted transmembrane helices sss: SSS sodium solute transporter sup; Function unclear; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: azo0376
symbol: azo0376
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to ebA3609 of Azoarcus sp. EbN1 of 62% (gnl|keqq|eba:ebA3609(KEGG)). InterPro: Aminotransferase class-III (IPR005814), Arginase family (IPR00594). Pfam: Aminotransferase class-III,Arginase family. Tigrfam: argD: acetylornithine and succinylornithine aminotransferase, GABAtrnsam:4-aminobutyrate aminotransferase. no signal peptide. no TMHs.


ensembl_gene_id: azo0377
symbol: ubiB
gene_biotype: protein_coding
description:
  Probable ubiquinone biosynthesis protein; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis. Belongs to the ABC1 family. UbiB subfamily.


ensembl_gene_id: azo0378
symbol: azo0378
gene_biotype: protein_coding
description:
  Putative TonB-dependent receptor. Homology to bpp0186 ao B. parapertussis of 54% (trembl|Q7W206) The TonB protein interacts with outer membrane receptor proteins that carry out high-affinity binding and energy-dependent uptake of specific substrates into the periplasmic space. These substrates are either poorly permeable through the porin channels or are encountered at very low concentrations. In the absence of TonB these receptors bind their substrates but do not carry out active transport. Interpro: TonB-dependent receptor (IPR000531) Pfam: TonB-dependent receptor (PF00593) signal Pe [...]


ensembl_gene_id: azo0379
symbol: azo0379
gene_biotype: protein_coding
description:
  Hypothetical secreted protein. No homology to the data bank. No domains predicted. signal peptide. No TMHs.


ensembl_gene_id: azo0380
symbol: argS
gene_biotype: protein_coding
description:
  Putative arginine-tRNA ligase (EC 6.1.1.19). Homology to argS of E. coli of 25% (sprot:SYR_ECOLI) CATALYTIC ACTIVITY: ATP + L-arginine + tRNA(Arg) = AMP + diphosphate + L-arginyl-tRNA(Arg). InterPro: Arginyl-tRNA synthetase (IPR001278); Aminoacyl-transfer RNA synthetase class-I (IPR001412) Tigrfam: argS: arginyl-tRNA synthetase Pfam: tRNA synthetases class I no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo0381
symbol: azo0381
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to CV3999 of C.violaceum of 34% (trembl|Q7NQY6(SRS)). Pfam: Sporulation related repeat This 35 residue repeat is found in proteins involved in sporulation and cell division such as FtsN, DedD, and CwlM. This repeat might be involved in binding peptidoglycan (Bateman A pers obs). No TMHs. Signal peptide present; Conserved hypothetical protein.


ensembl_gene_id: azo0382
symbol: dsbA
gene_biotype: protein_coding
description:
  Putative protein disulfide-isomerase. Homology to dsbA of P. flourescens of 34%. Involved in disulfide-bond formation. Acts by transferring its disulfide bond to other proteins. Tigrfam: redox_disulf_1: redox-active disulfid Pfam: DSBA Oxidoreductase signal peptide no TMHS; Family membership.


ensembl_gene_id: azo0383
symbol: azo0383
gene_biotype: protein_coding
description:
  The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases,TREMBL:Q8Y2Q1 (42% identity); SWISSPROT:P25970 (34% identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase; Specificity unclear.


ensembl_gene_id: azo0384
symbol: azo0384
gene_biotype: protein_coding
description:
  Hypothetical protein. No Good homologs in the DB matching the length of the protein. No Significant domains,features,motifs present.


ensembl_gene_id: azo0385
symbol: azo0385
gene_biotype: protein_coding
description:
  Hypothetical membrane protein. Homology to vng2292h of Halobacterium sp. of 25% (trembl|Q9HN16(SRS). no domains predicted .no signal peptide. 10 TMHs.


ensembl_gene_id: azo0386
symbol: azo0386
gene_biotype: protein_coding
description:
  Hypothetical membrane protein. No good homology to a protein of similar length in the data bank. no domains predicted no singal peptide 9 TMHs.


ensembl_gene_id: azo0387
symbol: azo0387
gene_biotype: protein_coding
description:
  Conserved hypothetical periplasmic binding proten. Homology to rs03250 of R. solanacearum of 53% (trembl|Q8Y2Q2). Interpro: Periplasmic binding protein (IPR002491). Pfam: Periplasmic binding protein (PF01497). This family includes bacterial periplasmic binding proteins. Several of which are involved in iron transport. no signal peptide. no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0388
symbol: azo0388
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to ebA3626 of Azoarcus sp. EbN1 of 59% (gnl|keqq|eba:ebA3626(KEGG)). InterPro: Protein of unknown function DUF132 InterPro:IPR002850; DUF132. IPR002716; PIN. IPR006596; PINc. Pfam:PF01850; PIN; SMART:SM00670; PINc; TIGRFAMs:TIGR00305; DUF132 TIGR00305: conserved hypothetical protein T. Non-secretory protein with very low signalpeptide probability (0.003) (Signal P predicted). Absence of transmembrane helices.


ensembl_gene_id: azo0389
symbol: phbC1
gene_biotype: protein_coding
description:
  Probable poly-beta-hydroxybutyrate synthase; Function:-Polymerizes d(-)-3-hydroxybutyryl-CoA to create PHB which consists of thousands of hydroxybutyrate molecules linked end to end. PHB serves as an intracellular energy reserve material when cells grow under conditions of nutrient limitation. Entry name TREMBL:Q8KXD5 Prim. accession # Q8KXD5 Identities = 354/607 (58%) InterPro IPR000073; A/b_hydrolase. IPR010941; PhaC_N. Pfam PF00561; Abhydrolase_1; 1. PF07167; PhaC_N; 1. Number of predicted TMHs: 0; High confidence in function and specificity.


ensembl_gene_id: azo0390
symbol: azo0390
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. TREMBL:Q8Y2Q4-47% identity, 61% similarity. Pfam: Lactamase_B,aminotransferase III, AP2 domain. TMHMM predicted transmembrane helices; Specificity unclear.


ensembl_gene_id: azo0391
symbol: azo0391
gene_biotype: protein_coding
description:
  Putative MerR-family transcriptional regulator,copper efflux regulator / copper export regulator) InterPro: IPR000551 HTH_MerR. HTH reporting nucleic acid binding motif; Family membership.


ensembl_gene_id: azo0392
symbol: azo0392
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to TREMBL:Q8YBL0 (47% identity); TREMBL:Q987R7 (50% identity); TREMBL:Q7WA35 (55% identity). InterPro (IPR003736): Phenylacetic acid degradation-related protein. Pfam (DUF157): Uncharacterized protein PaaI, COG2050; Function unclear.


ensembl_gene_id: azo0393
symbol: fadAx
gene_biotype: protein_coding
description:
  Probable acyl-CoA thiolase. Homology to fadAx of P. putida of 67% (gnl|keqq|ppu:PP2215(KEGG)). IPR002155; Thiolase. Pfam PF02803; Thiolase_C; 1. PF00108; Thiolase_N; 1. Two different types of thiolase are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (EC:2.3.1.9) and 3-ketoacyl-CoA thiolase (EC:2.3.1.16). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid -oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of a [...]


ensembl_gene_id: azo0394
symbol: fadfX
gene_biotype: protein_coding
description:
  Probable acyl-CoA dehydrogenase; Activity:- Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor. Entry name TREMBL:Q9AHX9 Prim. accession # Q9AHX9 InterPro IPR006089; Acyl-CoA_dh. IPR006090; Acyl-CoA_dh_C. IPR006091; Acyl-CoA_dh_M. IPR006092; Acyl-CoA_dh_N. IPR009075; AcylCoADH_C_like. IPR009100; AcylCoA_dehyd_NM. Pfam PF00441; Acyl-CoA_dh; 1. PF02770; Acyl-CoA_dh_M; 1. PF02771; Acyl-CoA_dh_N; 1. Identities = 244/375 (65%) Number of predicted TMHs: 0; Family membership.


ensembl_gene_id: azo0395
symbol: azo0395
gene_biotype: protein_coding
description:
  2-hydroxychromene-2-carboxylate isomerase family protein; Similar to TREMBL:Q8Y2R2 (42% identity); TREMBL:Q7WEK4 (30% identity); TREMBL:Q88IW7 (27% identity). Pfam (HCCA_isomerase): 2-hydroxychromene-2-carboxylate isomerase; Family membership.


ensembl_gene_id: azo0396
symbol: azo0396
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to cc1308 of C. crescentus of 35% (trembl|Q9A8P5). Pfam:DUF1289 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N-terminus. The function of this family is unknown. no signal peptide no TMHs.


ensembl_gene_id: azo0397
symbol: azo0397
gene_biotype: protein_coding
description:
  Hypothetical protein, 54% identity to TrEMBl;Q8YGQ7. Has PF06945, Protein of unknown function (DUF1289);IPR010710;This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N-terminus. The function of this family is unknown.


ensembl_gene_id: azo0398
symbol: azo0398
gene_biotype: protein_coding
description:
  Putative beta lactamase; Probable Hypothetical protein ycbL. TREMBL:Q8Y2S7-43% identity,57% similarity. TIGRFAM:2A0115-Benzoate transport proteins belong to this group. Benzyl alcohol,benzaldehyde, benzoate, and anthranilate are metabolized via catechol, cis,cis-muconate, and the beta-ketoadipate pathway in some bacteria InterPro: Metallo-beta-lactamase superfamily Pfam:Metallo Beta lactamase superfamily, Phage lysozyme TMHMM predicted transmembrane heleces ftsZ: cell division protein FtsZ; Function unclear.


ensembl_gene_id: azo0400
symbol: azo0400
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to TP1032 of Treponema pallidum of 32% (sprot|YA32_TREPA(SRS)). Has PF07009(IPR010739):Protein of unknown function (DUF1312);This family consists of several bacterial proteins of around 120 residues in length. The function of this family is unknown. No singal peptide. 1 TMH; Conserved hypothetical protein.


ensembl_gene_id: azo0401
symbol: azo0401
gene_biotype: protein_coding
description:
  Heptaprenyl diphosphate synthase component I, 23% identity (45% similarity) to TrEMBL;Q896H9. Has PF07456,Heptaprenyl diphosphate synthase component I;IPR010898,Hpre_diP_synt_I: This family contains component I of bacterial heptaprenyl diphosphate synthase (approximately 170 residues long). This is one of the two dissociable subunits that form the enzyme, both of which are required for the catalysis of the biosynthesis of the side chain of menaquinone-7.


ensembl_gene_id: azo0402
symbol: cheB1
gene_biotype: protein_coding
description:
  Probable protein glutamate-methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.


ensembl_gene_id: azo0403
symbol: cheR1
gene_biotype: protein_coding
description:
  Probable chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.


ensembl_gene_id: azo0404
symbol: cheD
gene_biotype: protein_coding
description:
  Conserved hypothetical chemotaxis protein CheD; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.


ensembl_gene_id: azo0405
symbol: cheW1
gene_biotype: protein_coding
description:
  Probable positive regulator of CheA protein activity, CheW. Pfam: PF01584; CheW. SMART: SM00260; CheW. Chemotaxis protein cheW.Involved in the transmission of sensory signals from the chemoreceptors to the flagellar motors. It physically bridges chea to the mcps (methyl-accepting chemotaxis proteins) to allow regulated phosphotransfer to cheY and cheB; High confidence in function and specificity.


ensembl_gene_id: azo0406
symbol: azo0406
gene_biotype: protein_coding
description:
  Methyl-accepting chemotaxis protein, only very low similarity to SWISSPROT: sprot|Y4FA_RHISN (14% Rhizobium sp. (strain NGR234). InterPro: IPR004090; Me_chemotaxis. IPR004089; Chmtaxis_transd. IPR003660; HAMP. Pfam: PF00672; HAMP. PF00015; MCPsignal. SMART: SM00304; HAMP. SM00283; MA. Signal P reporting signal peptide. TMHMM reporting 2 transmembrane helices; Family membership.


ensembl_gene_id: azo0407
symbol: azo0407
gene_biotype: protein_coding
description:
  Methyl-accepting chemotaxis protein, only very low similarity to SWISSPROT: sprot|Y4FA_RHISN (14% Rhizobium sp. (strain NGR234). InterPro: IPR004090; Me_chemotaxis. IPR004089; Chmtaxis_transd. IPR003660; HAMP. Pfam: PF00672; HAMP. PF00015; MCPsignal. SMART: SM00304; HAMP. SM00283; MA. Signal P reporting signal peptide. TMHMM reporting 1 transmembrane helices; Family membership.


ensembl_gene_id: azo0408
symbol: cheA1
gene_biotype: protein_coding
description:
  Putative chemotaxis histidine kinase protein,ATPbind_ATPase. IPR004358; Bact_sens_pr_C. IPR002545; CheW. IPR004105; H-kinase_dim. IPR005467; His_kinase. IPR008207; Hpt. IPR008208; Hpt_N. Pfam: PF01584; CheW. PF02895; H-kinase_dim. PF02518; HATPase_c. PF01627; Hpt. SMART: SM00260; CheW. SM00387; HATPase_c. SM00073; HPT. Chemotaxis protein cheA (EC 2.7.3.-). INVOLVED IN THE TRANSMISSION OF SENSORY SIGNALS FROM THE CHEMORECEPTORS TO THE FLAGELLAR MOTORS. CHEA IS AUTOPHOSPHORYLATED; IT CAN TRANSFER ITS PHOSPHATE GROUP TO EITHER CHEB OR CHEY; High confidence in function and specificity.


ensembl_gene_id: azo0409
symbol: azo0409
gene_biotype: protein_coding
description:
  Putative anti-sigma factor antagonists (STAS domain protein), STAS. Pfam: PF01740; STAS. The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function; Function unclear.


ensembl_gene_id: azo0410
symbol: azo0410
gene_biotype: protein_coding
description:
  Putative methyl-accepting chemotaxis protein,Chmtaxis_transd. Pfam: PF00015; MCPsignal. SMART: SM00283; MA. Signal P reporting signal peptide. TMHMM reporting 2 transmembrane helices; Function unclear.


ensembl_gene_id: azo0412
symbol: azo0412
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to rsc0739 of R. solanacearum of 52% (trembl|Q8Y1F1). Pfam: DUF395 This family includes YeeE and YedE from E. coli. These proteins are integral membrane proteins of unknown function. Many of these proteins contain two homologous regions that are represented by this family. This region contains several conserved glycines and an invariant cysteine that is probably an important functional residue. signal peptide 8 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0413
symbol: exsB
gene_biotype: protein_coding
description:
  Conserved hypothetical ExsB protein; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.


ensembl_gene_id: azo0414
symbol: queE
gene_biotype: protein_coding
description:
  Conserved hypothetical radical activating enzyme; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.


ensembl_gene_id: azo0415
symbol: cpoB
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.


ensembl_gene_id: azo0416
symbol: pal
gene_biotype: protein_coding
description:
  Putative peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: azo0417
symbol: tolB
gene_biotype: protein_coding
description:
  Putative translocation protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: azo0418
symbol: tolA
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to tolA of N. europaea of 39% (trembl|Q82XP0). no domains predicted InterPro: Proline-rich region (IPR000694) no signal peptide 1 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0419
symbol: tolR
gene_biotype: protein_coding
description:
  Putative translocation protein TolR. Holomology to tolR of P. aeruginosa of 30% (sprot|TOLR_PSEAE) Involved in eth TonB-independent uptake of proteins. no signal peptide probable 1 TMH; Family membership.


ensembl_gene_id: azo0420
symbol: tolQ
gene_biotype: protein_coding
description:
  Translocation protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: azo0421
symbol: azo0421
gene_biotype: protein_coding
description:
  Conserved hypothetical thioesterase. Homology to bb4233 of B. bronchiseptica of 41% (trembl|Q7WFN8). Tigrfam: TIGR00051: conserved hypothetical protein .Pfam: 4-hydroxybenzol-CoA thioesterase (PF0361). Interpro: 4-hydroxybenzol-CoA thioesterase (IPR006684); thioesterase superfamily (IPR006683) This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl [...]


ensembl_gene_id: azo0422
symbol: azo0422
gene_biotype: protein_coding
description:
  Hypothetical protein; SPROT:P37718: 26% identity, 43% similarity Cellulose synthase operon protein C precursor. Required for maximal bacterial cellulose synthesis. InterPro: STAS domain. The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. InterPro:IPR008410; BCSC_C. IPR003921; Cell_synth_C. Pfam:PF05420; BCSC_C; 1. ant_ant_sig: anti-anti-sigma factor No signal peptide present SignalP pr [...]


ensembl_gene_id: azo0423
symbol: hslV
gene_biotype: protein_coding
description:
  ATP-dependent protease HslV; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.


ensembl_gene_id: azo0424
symbol: hslU
gene_biotype: protein_coding
description:
  ATP-dependent Hsl protease ATP-binding subunit; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis.


ensembl_gene_id: azo0425
symbol: mdcF1
gene_biotype: protein_coding
description:
  Putative malonate transporter. subcellular location:integral membrane protein (potential). similarity: belongs to the auxin efflux carrier (tc 2.a.69) family. SPROT:P56948:24% identity, 41% similarity. InterPro: IPR004776; Auxin_eff. Pfam:PF03547; Auxin_eff 2a69: Auxin Efflux Carrier; Specificity unclear.


ensembl_gene_id: azo0427
symbol: hslR
gene_biotype: protein_coding
description:
  Heat shock protein 15 homolog (HSP15). INVOLVED IN THE RECYCLING OF FREE 50S RIBOSOMAL SUBUNITS THAT STILL CARRY A NASCENT CHAIN. BINDS RNA MORE SPECIFICALLY THAN DNA. BINDS WITH VERY HIGH AFFINITY TO THE FREE 50S RIBOSOMAL SUBUNIT. DOES NOT BIND IT WHEN IT IS PART OF THE 70S RIBOSOME; Conserved hypothetical protein.


ensembl_gene_id: azo0428
symbol: cysN/C
gene_biotype: protein_coding
description:
  Putative sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.


ensembl_gene_id: azo0429
symbol: cysD
gene_biotype: protein_coding
description:
  Putative sulfate adenylyltransferase subunit 2; 84% PAPS_reduct. Pfam:PF01507; PAPS_reduct; 1; High confidence in function and specificity.


ensembl_gene_id: azo0431
symbol: azo0431
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to PA1837 of P.aeruginosa of 50% (tremble:Q9I2Q8). Has PF06073,Bacterial protein of unknown function (DUF934);IPR008318 UCP030820: This family consists of several bacterial proteins of unknown function. One of the members of this family Q8YEW3 is thought to be an oxidoreductase. No signal peptide. No TMHs.


ensembl_gene_id: azo0432
symbol: cysI
gene_biotype: protein_coding
description:
  Putative sulfite reductase; 49% Fd-NiR.IPR011255; NiR_SiRalpha_1/3.IPR006067; Nir_Sir_4Fe4S.IPR005117; NiR_SiR_beta_fer. Pfam:PF01077; NIR_SIR; 2.PF03460; NIR_SIR_ferr; 2; High confidence in function and specificity.


ensembl_gene_id: azo0433
symbol: azo0433
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to bll1489 of B. japonicum of 58% (trembl|Q89UC8(SRS)) InterPro:IPR002781; DUF81. Pfam:PF01925; DUF81 Presence of 8 transmembrane helices (TMHMM predicted) probable transmembrane protein of unknown function) no signal peptide; Conserved hypothetical protein.


ensembl_gene_id: azo0434
symbol: cysB
gene_biotype: protein_coding
description:
  HTH-type transcriptional regulator cysB (Cys regulon transcriptional activator). this protein is a positive regulator of gene expression for the cysteine regulon, a system of 10 or more loci involved in the biosynthesis of l-cysteine from inorganic sulfate. the inducer for cysb is n-acetylserine. cysb inhibits its own transcription; High confidence in function and specificity; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: azo0435
symbol: azo0435
gene_biotype: protein_coding
description:
  Hypothetical secreted protein. No homology to the data bank. No domains predicted. Signal peptide present. No TMHs.


ensembl_gene_id: azo0438
symbol: ansB2
gene_biotype: protein_coding
description:
  Periplasmic L-asparaginase II; L-asparaginase precursor (EC 3.5.1.1) (L-asparagine amidohydrolase) (L-ASNase); High confidence in function and specificity; Belongs to the asparaginase 1 family.


ensembl_gene_id: azo0439
symbol: glnQ1
gene_biotype: protein_coding
description:
  Glutamine transport ATP-binding protein glnQ. Homology with glnQ of B. stearothermophilus of 56% (sprot|GLNQ_BACST). PART OF THE BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM FOR GLUTAMINE. PROBABLY RESPONSIBLE FOR ENERGY COUPLING TO THE TRANSPORT SYSTEM. InterPro: AAA ATPase superfamily (IPR003593), ABC_transporter (IPR003439), ATP/GTP_binding site motif A (P-loop) (IPR001687) Pfam: ABC transporter no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo0440
symbol: glnM
gene_biotype: protein_coding
description:
  Putative glutamine transport permease protein. Homology to glnM of B. subtilis of 30% (TREMBL:O34671) Probably part of the binding-protein-dependent transport system of amino acids. Probably responsible for the translocation of the substrate across the membrane InterPro: Binding-protein-dependent transport systems inner membrane component (IPR000515) Pfam: Binding-protein-dependent transport systems inner membrane component no signal peptide probable 5 TMHs; Family membership.


ensembl_gene_id: azo0441
symbol: glnP
gene_biotype: protein_coding
description:
  Glutamate/aspartate transport system permease protein gltJ. Homology to glnP of B. subtilis of 23% (CAA93320). PART OF THE BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM FOR AMINO ACID; PROBABLY RESPONSIBLE FOR THE TRANSLOCATION OF THE SUBSTRATE ACROSS THE MEMBRANE. InterPro: Binding-protein-dependent transport systems inner membrane component (IPR000515) Pfam: Binding-protein-dependent transport systems inner membrane component HTH-motif probable 4 TMHs no signal peptide; Family membership.


ensembl_gene_id: azo0442
symbol: glnH
gene_biotype: protein_coding
description:
  Putative glutamine-binding protein. Homology to glnH of B. stearothermophilus of 28% (sprot|GLNH_BACST). Involved in glutamine-transport system. Interacts with the glutamine-transport system glnPQM. Pfam: Bacterial extracellular solute binding protein no TMHs signal peptide; Family membership.


ensembl_gene_id: azo0443
symbol: azo0443
gene_biotype: protein_coding
description:
  Beta-lactamase; Conserved Hypothetical protein(Metallo-beta-lactamase superfamily). Has PF00753, Metallo-beta-lactamase superfamily; IPR001279, Blactmase-like;These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor; Family membership.


ensembl_gene_id: azo0444
symbol: lig2
gene_biotype: protein_coding
description:
  DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase [ATP]). This protein seals during DNA replication DNA recombination and DNA repair nicks in double-stranded DNA (By similarity); High confidence in function and specificity.


ensembl_gene_id: azo0445
symbol: azo0445
gene_biotype: protein_coding
description:
  Putative ATP-dependent helicase MTH1802. TREMBL:Q88NV1: 57% identity, 66% similarity InterPro:IPR001410; DEAD/DEAH box helicase IPR001650; Helicase_C. Pfam: PF00270; DEAD; 1. PF00271; Helicase_C; 1. SMART: SM00487; DEXDc; 1. SM00490: HELICc livcs: branched-chain amino acid trans Non secretory protein with low probablity of cleavage site (0.167): Signal P predicted. No transmembrane helices (TMHMM predicted); High confidence in function and specificity.


ensembl_gene_id: azo0446
symbol: azo0446
gene_biotype: protein_coding
description:
  Probable Hypothetical protein MJ0037. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of Escherichia coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal TREMBL:Q88NV2: 46% identity, 59% similarity InterPro:IPR004843; M-ppestrase. Pfam: PF00149; Metallophos; No transmembrane helices TIGR00024: conserved hypothetical prot; Function unclear.


ensembl_gene_id: azo0447
symbol: dctD1
gene_biotype: protein_coding
description:
  C4-dicarboxylate transport transcriptional regulatory protein,; High confidence in function and specificity.


ensembl_gene_id: azo0448
symbol: dctB1
gene_biotype: protein_coding
description:
  Sensor histidine kinase; C4-dicarboxylate transport sensor protein,; High confidence in function and specificity.


ensembl_gene_id: azo0449
symbol: kefB
gene_biotype: protein_coding
description:
  Glutathione-regulated potassium-efflux system protein kefB,(K+/H+ antiporter).Transport system that facilitates potassium-efflux possibly by potassium-proton antiport. 32% K_eff.IPR006153; Na_H_porter.IPR006036;TrkA_Kuptake. IPR003148; TrkA_N. Pfam:PF00999; Na_H_Exchanger; 1.PF02254; TrkA-N; 1. TIGRFAMs:TIGR00932; 2a37; 1. TMHelix:12. Belongs to the monovalent cation:proton antiporter 2 (cpa2) transporter (TC 2.A.37) family. KefB subfamily; High confidence in function and specificity.


ensembl_gene_id: azo0450
symbol: azo0450
gene_biotype: protein_coding
description:
  PAS/PAC/GGDEF-domain containing protein,implicating involvement into signalling processes. Similarity to TREMBL: trembl|Q98JA6 (30% Rhizobium loti,hypothetical protein mlr2027) InterPro: IPR000160 GGDEF. IPR001610 PAC. IPR000700 PAS-assoc_C. IPR000014 PAS_domain. Pfam: PF00990 GGDEF. SMART: SM00086 PAC. SM00091 PAS. TIGRFAM: TIGR00254 GGDEF. TIGR00229 sensory_box.


ensembl_gene_id: azo0451
symbol: azo0451
gene_biotype: protein_coding
description:
  Hypothetical secreted protein. No homology with hits in the Database. No domains predicted. Signal peptide present. No TMHs.


ensembl_gene_id: azo0452
symbol: trxB1
gene_biotype: protein_coding
description:
  Putative thioredoxin reductase. Homology to trxB of S. coelicolor of 25% (sprot|TRXB_STRCO). Catalyse the reaction: thioredoxin + nadp(+) = thioredoxin disulfide + nadph. InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR001327) Pfam: Pyridine nucleotide-disulphide oxidoreductase no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo0453
symbol: atm1
gene_biotype: protein_coding
description:
  Probable composite transport ATP-binding permease protein. Homology to amt1 of S. cereviciae of 48% (sprot|ATM1_YEAST). COULD BE INVOLVED IN THE TRANSPORT OF yet unknow substrates (probable HEME) FROM THE MITOCHONDRIA TO THE CYTOSOL. InterPro: ABC transporter transmembrane region (IPR001140), ATP/GTP-binding site motif A (P loop) (IPR001687), ABC transporter (IPR003439),AAA_ATPase sperfamily (IPR003593) Pfam: ATP transporter,ABC transporter transmembrane region no signal peptide probable 6 TMHs; Specificity unclear.


ensembl_gene_id: azo0454
symbol: azo0454
gene_biotype: protein_coding
description:
  Conserved hypothetical threonine efflux protein. Homology to rsc0148 of R. solanaxearum of 52% (trembl|Q8Y2B8). InterPro: Lysine exporter protein (LYSE/YGGA) (IPR001123) Pfam: LysE type translocator Tigrfam: 2A76: Homoserine/Threonine efflux protein signal peptide Probable 6 TMHs; Family membership.


ensembl_gene_id: azo0455
symbol: azo0455
gene_biotype: protein_coding
description:
  Putative cobalmin snthesis protein; This family of proteins contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans [1]. TREMBL:Q8YJP6: 40% identity, 54% similarity. Pfam:PF02492; Cobalmine synthesis protein; pfkB family carbohydrate kinase; FAD binding domain. TIGRFAM:proC: pyrroline 5 carboxylate reductase. mobB: molybdopterin-guanine dinucleotide; Family membership.


ensembl_gene_id: azo0456
symbol: azo0456
gene_biotype: protein_coding
description:
  Hypothetical secreted protein. No homology to the data bank. No domains predicted. signal peptide. no TMHs.


ensembl_gene_id: azo0459
symbol: amtD
gene_biotype: protein_coding
description:
  Probable ammonia permease; Putative ammonium transporter MJ1343. A number of evolutionarily-related proteins have been found to be involved in the transport of ammonium ions across membranes.Represent a family of high affinity ammonium transporters. These proteins are highly hydrophobic and seem to contain from 10 to 12 transmembrane domain. TREMBL:Q88L29: 73% identity, 84% similarity InterPro: Ammonium transporter family InterPro: IPR001905; Ammonium_transpt. IPR010256; RH_like_transpt. Pfam: PF00909; Ammonium_transp; 1. PROSITE: PS01219; AMMONIUM_TRANSP amt: ammonium transporter Non  [...]


ensembl_gene_id: azo0460
symbol: dnr
gene_biotype: protein_coding
description:
  Putative Dnr-like transcriptional activator. Similar to SWISSPROT: sprot|FIXK_RHIME (28% Rhizobium meliloti, FixK) InterPro: IPR000595 cNMP_binding. IPR001808 HTH_Crp. Pfam: PF00027 cNMP_binding. HTH reporting nucleic acid binding motif; Family membership.


ensembl_gene_id: azo0461
symbol: azo0461
gene_biotype: protein_coding
description:
  Hypthetical secreted protein. No homology to the data bank. No domains predicted. No TMHs. Has signal peptide.


ensembl_gene_id: azo0462
symbol: azo0462
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to an orf of Trichodesmium erythraeum of 45% (gi|48892210|ref|ZP_00325608.1|(NBCI ENTREZ)). No domains predicted. Signal peptide present. No TMH present; Conserved hypothetical protein.


ensembl_gene_id: azo0463
symbol: fadE
gene_biotype: protein_coding
description:
  Probable acyl-CoA dehydrogenase. Homology to fadE of E. coli of 55% (trembl|Q8KTJ8(SRS)) Catalyzes the dehydrogenation of acyl-CoA (By similarity). Reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor. InterPro: Acyl-CoA dehydrogenase (IPR006089) Pfam: Acyl-CoA dehydrogenase, N-terminal domain; Acyl-CoA dehydrogenase, C-terminal domain signal peptide 2 TMHs; High confidence in function and specificity.


ensembl_gene_id: azo0464
symbol: fadA1
gene_biotype: protein_coding
description:
  Probable 3-ketoacyl-CoA thiolase; Subunit of fatty acid oxidation complex, 3-keto-acyl-coa-thiolase. Activity:-acyl-CoA + acetyl-CoA = CoA + 3-oxoacyl-CoA Entry name TREMBL:Q8G967 Prim. accession # Q8G967 Identities = 284/425 (66%) InterPro IPR002155; Thiolase. Pfam PF02803; Thiolase_C; 1. PF00108; Thiolase_N; 1. Number of predicted TMHs: 0 Prediction: Non-secretory protein Signal peptide probability: 0.000; Family membership; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: azo0465
symbol: fadB1
gene_biotype: protein_coding
description:
  Probable enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase; Alpha-subunit of fatty acid oxidation complex. Entry name TREMBL:Q8G968 Prim. accession # Q8G968 Identities = 373/642 (58%) InterPro IPR006108; 3HCDH_C. IPR006176; 3HCDH_N. Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0 IPR008927; 6DGDH_C_like. IPR001753; EnCoA_hydrtse. Pfam PF00725; 3HCDH; 1. PF02737; 3HCDH_N; 1. PF00378; ECH; 1; Family membership.


ensembl_gene_id: azo0466
symbol: azo0466
gene_biotype: protein_coding
description:
  Conserved hypothetical acyl-CoA thioesterase. Homology to an orf of Azoarcus sp. EbN1 (trembl|Q8G9D6). Pfam: cytosolic long-chain acyl-CoA thioesterase Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. Interpro: Thioesterase superfamily (IPR006683) no signal peptide no. TMHs; Family membership.


ensembl_gene_id: azo0467
symbol: fadL
gene_biotype: protein_coding
description:
  Long-chain fatty acid transport protein precursor (Outer membrane fadL protein) (Outer membrane flp protein). Involved in translocation of long-chain fatty acids across the outer membrane. FadL may form a specific channel (By similarity). Entry name:- Q8G9D7 Primary accession number:-Q8G9D7 InterPro:- IPR005017; Toluene_X. Pfam:- PF03349; Toluene_X; 1. identity:- 66% Prediction: Signal peptide Signal peptide probability: 1.0 Number of predicted TMHs: 0; High confidence in function and specificity.


ensembl_gene_id: azo0468
symbol: fadB2
gene_biotype: protein_coding
description:
  Short-chain enoyl-CoA hydratase activity. Activity:- 3S)-3-hydroxyacyl-CoA = trans-2(or 3)-enoyl-CoA + H2O Entry name TREMBL:Q8P986 Prim. accession # Q8P986 InterPro IPR006108; 3HCDH_C. IPR006176; 3HCDH_N. IPR008927; 6DGDH_C_like. IPR001753; EnCoA_hydrtse. IPR000205; NAD_BS. Pfam PF00725; 3HCDH; 1. PF02737; 3HCDH_N; 1. PF00378; ECH; 1. Identities = 468/796 (58%) Prediction: Signal peptide Signal peptide probability: 0.980 Number of predicted TMHs: 0; Family membership.


ensembl_gene_id: azo0469
symbol: fadA2
gene_biotype: protein_coding
description:
  Probable 3-ketoacyl-CoA thiolase; Activity:- acyl-CoA + acetyl-CoA = CoA + 3-oxoacyl-CoA Entry name:- SWISSPROT:THIK_ECOLI Prim. accession # P21151 InterPro:- IPR002155; Thiolase. Pfam:-PF02803; Thiolase_C; 1. PF00108; Thiolase_N; 1. Identities = 177/400 (44%) Number of predicted TMHs: 0; High confidence in function and specificity; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: azo0470
symbol: paaG2
gene_biotype: protein_coding
description:
  Putative enoyl-CoA hydratase; Function:- COULD POSSIBLY OXIDIZES FATTY ACIDS USING SPECIFIC COMPONENTS (BY SIMILARITY). CATALYTIC ACTIVITY:-(3S)-3-hydroxyacyl-CoA = trans-2(or 3)-enoyl-CoA + H(2)O. Entry name SWISSPROT:PAAG_ECOLI Prim. accession # P77467 InterPro:- IPR001753; EnCoA_hydrtse. Pfam:-PF00378; ECH; 1. Identities = 92/265 (34%) Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0; Family membership.


ensembl_gene_id: azo0471
symbol: azo0471
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to cv1508 of C. violaceum of 37% (trembl|Q7NXW8). Pfam: uncharacterized ACR, COG1434. no signal peptide. 2 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0472
symbol: azo0472
gene_biotype: protein_coding
description:
  Probable O-acetylhomoserine aminocarboxypropyltransferase. Homology to cysD of A. nidulans of 54% (sprot|CYSD_EMENI). Transforms O-acetylhomoserine into homocysteine. InterPro: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes (IPR000277) Pfam: Cys/Met metabolism PLP-dependent enzymes no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo0473
symbol: azo0473
gene_biotype: protein_coding
description:
  Hypothetical membrane protein. No good homology to the data bank. No domains predicted. 1 TMHs No signal peptide present.


ensembl_gene_id: azo0474
symbol: azo0474
gene_biotype: protein_coding
description:
  Exported protein with sporulation related repeat. Pfam: Sporulation related repeat. InterPro: Proline-rich region; Function unclear.


ensembl_gene_id: azo0475
symbol: fliW
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum.


ensembl_gene_id: azo0476
symbol: azo0476
gene_biotype: protein_coding
description:
  Conserved hypothetical endoribonuclase L-PSP. Homology to orf1 of A. vineladii of 74% (sprot|YVN1_AZOVI(SRS)) This protein was described initially as an inhibitor of protein synthesis intiation but is now viewed as an endoribonuclease active on single-stranded mRNA. The cleavage of mRNA is responsible for the inhibition of protein synthesis. A role in purine regulation has also been suggested. Tigrfam: Endoribonuclease L-PSP, putative Pfam: Endoribonuclease L-PSP (=YipgF family) no TMHs weak indication for signal peptide; Conserved hypothetical protein.


ensembl_gene_id: azo0477
symbol: recG
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.


ensembl_gene_id: azo0478
symbol: ubiC
gene_biotype: protein_coding
description:
  Putative chorismate:pyruvate lyase; Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4-hydroxybenzoate (4HB) for the ubiquinone pathway; Belongs to the UbiC family.


ensembl_gene_id: azo0479
symbol: ubiA
gene_biotype: protein_coding
description:
  4-hydroxybenzoate octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.


ensembl_gene_id: azo0480
symbol: azo0480
gene_biotype: protein_coding
description:
  Conserved hypothetical irons-sulfur binding oxidase. Homology to cv4235 of C. violaceum of 70% (trembl|Q7NQA5) Pfam: FAD binding domain; FAD linked oxidase, Cterminal domain Tigrfam: glcD: glycolate oxidase subunit GlcD no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo0482
symbol: azo0482
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to yqaA of Nitrosomonas europaea of 50% (trembl|Q82TH7(SRS)) No domains predicted. Signal peptide present. TMHMM2 reporting presence of 2 TMH's; Conserved hypothetical protein.


ensembl_gene_id: azo0483
symbol: azo0483
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to PA4874 of P.aeruginosa of 36% (trembl|Q9HUT9(SRS)) No domains predicted. Signal petide present. No TMH present; Conserved hypothetical protein.


ensembl_gene_id: azo0484
symbol: azo0484
gene_biotype: protein_coding
description:
  FHA domain containing protein. Best similarity to SWISSPROT: sprot|REPB_AGRRH (9% Agrobacterium rhizogenes,possible replication protein b) Pfam: PF00211 Adenylate and Guanylate cyclase catalytic domain. SMART: SM00240 FHA Forkhead associated domain.


ensembl_gene_id: azo0485
symbol: ttcA
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system.


ensembl_gene_id: azo0486
symbol: azo0486
gene_biotype: protein_coding
description:
  Conserved hypothetical short-chain dehydrogenase. Homology to cv4132 of C. violaceum of 60% (trembl:Q7NQK5). Pfam: short-chain dehydorgenase (PF00106). no signal peptide. no TMHs; Family membership.


ensembl_gene_id: azo0487
symbol: azo0487
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to NE1166 of N.europaea of 49% (tremble:Q82VC8) Has PF02636,Uncharacterized ACR, COG1565;IPR003788, DUF185; This family contains several uncharacterised proteins. Q8YI87 has been described as an ATP synthase beta subunit transcription termination factor rho protein. No signal peptide. No TMHs.


ensembl_gene_id: azo0488
symbol: azo0488
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to ebA3372 of Azoarcus sp. EbN1 of 47% (gnl|keqq|eba:ebA3372(KEGG)). No domains predicted. No signal peptide. No TMHs.


ensembl_gene_id: azo0490
symbol: azo0490
gene_biotype: protein_coding
description:
  Putative acetone-cyanohydrin lyase; TREMBL:Q8F3A6: 43% identity, 60% similarity Non-heme chloroperoxidase (EC 1.11.1.10) (Chloride peroxidase) (CPO-P) (Chloroperoxidase P). CHLORINATES AND BROMINATES SUITABLE ORGANIC COMPOUNDS. INVOLVED IN THE BIOSYNTHESIS OF THE ANTIBIOTIC PYRROLNITRIN. InterPro: Alpha/beta hydrolase fold InterPro:IPR000073; A/b_hydrolase. IPR003089: AB_hydrolase. IPR000379: Ser_estrs. Pfam:PF00561; Abhydrolase_1; 1 TIGRFAM:dsbE: periplasmic protein thiol:disulf; Family membership.


ensembl_gene_id: azo0491
symbol: isoJ
gene_biotype: protein_coding
description:
  Probable glutathione S-transferase. Homology to isoJ of Rhodococcus sp AD45 of 48% (trembl|Q9RBP3). Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group. Pfam: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo0492
symbol: azo0492
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to BH1226 of Bacillus halodurans of 40% (pir|B83803) no domains predicted. signal peptide. 1 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0493
symbol: cca1
gene_biotype: protein_coding
description:
  tRNA-nucleotidyltransferase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases.


ensembl_gene_id: azo0494
symbol: sspA1
gene_biotype: protein_coding
description:
  Putative stringent starvation protein A. Homology to sspA of E. coli of 26% (sprot|SSPA_ECOLI). FORMS AN EQUIMOLAR COMPLEX WITH THE RNA POLYMERASE HOLOENZYME (RNAP) BUT NOT WITH THE CORE ENZYME. IT IS SYNTHESIZED PREDOMINANTLY WHEN CELLS ARE EXPOSED TO AMINO ACID STARVATION AT WHICH TIME IT ACCOUNTS FOR OVER 50% OF THE TOTAL PROTEIN SYNTHESIZED. InterPro: Glutathione S-transferase N terminus (IPR001045) Pfam: Glutathione S-transferase, N-terminal domaine no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo0496
symbol: sltY
gene_biotype: protein_coding
description:
  Putative soluble lytic murein transglycosylase. Homology to slt of E. coli of 24% (sprot|SLT_ECOLI). Murein-degrading enzyme. Catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan. May play a role in recycling of muropeptides during cell elongation and/or cell division. InterPro: SLT domain (IPR000189) Pfam: Transglycosylase SLT domain singal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo0497
symbol: azo0497
gene_biotype: protein_coding
description:
  Unnamed protein product; 5-formyltetrahydrofolate cyclo-ligase InterPro: 5-formyltetrahydrofolate cyclo-ligase; Specificity unclear; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.


ensembl_gene_id: azo0498
symbol: azo0498
gene_biotype: protein_coding
description:
  GGDEF/PAS/PAC-domain containing protein. Similarity to SWISSPROT: sprot|Y4LL_RHISN (13% Rhizobium sp. (strain NGR234), hypothetical 91.8 kda protein y4ll) / TREMBL: trembl|Q55955 (14% Synechocystis sp. (strain PCC 6803),sll0779) Pfam: PF00990 GGDEF domain. PF00989 PAS. PF00785 PAC. TIGRFAM: TIGR00254 putative diguanylate cyclase (GGDEF) domain. TIGR00229 PAS domain S-box. TMHMM reporting 2 transmembrane helices.


ensembl_gene_id: azo0499
symbol: pheC
gene_biotype: protein_coding
description:
  Putative cyclohexadienyl dehydratase precursor. Homology to pheC of P. aeruginosa of 36% (sprot|PHEC_PSEAE) FORMS ALTERNATIVE PATHWAY FOR PHENYLALANINE BIOSYNTHESIS. CAN CATALYZE TWO REACTIONS: PREPHENATE DEHYDRATASE AND AROGENATE DEHYDRATASE. MAY HAVE A ROLE IN CHEMOTAXIS OR TRANSPORT. InterPro: Bacterial extracellular solute-binding proteins family 3 (IPR001638), solute-binding protein/glutamate receptor (IPR001311) Pfam: Bacterial extracellular solute-binding proteins signal peptide no TMHs; Function unclear.


ensembl_gene_id: azo0500
symbol: ilvA
gene_biotype: protein_coding
description:
  Probable threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.


ensembl_gene_id: azo0501
symbol: hprK
gene_biotype: protein_coding
description:
  Probable Hpr serine kinase/phosphatase; Catalyzes the ATP- as well as the pyrophosphate-dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK/P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P-Ser-HPr).


ensembl_gene_id: azo0502
symbol: ptsN
gene_biotype: protein_coding
description:
  protein-Npi-phosphohistidine-sugar phosphotransferase; Probable nitrogen regulatory IIA protein,; High confidence in function and specificity.


ensembl_gene_id: azo0504
symbol: rpoN1
gene_biotype: protein_coding
description:
  RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: azo0505
symbol: yhbG
gene_biotype: protein_coding
description:
  Probable ABC transporter ATP-binding protein HI1148. ATP-binding cassette (ABC) transporters are multidomain membrane proteins, responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. TREMBL:Q7NST9: 64% identity,75% similarity InterPro: IPR003593; AAA_ATPase. IPR003439; ABC_transporter. IPR000767; Disease_resist. IPR003016; Lipoyl_BS. Pfam PF00005; ABC_tran; 1 mobB: molybdopterin-guanine dinucleoti TMH's present 0; High confidence in function and specificity.


ensembl_gene_id: azo0507
symbol: recA
gene_biotype: protein_coding
description:
  Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.


ensembl_gene_id: azo0508
symbol: ygaD1
gene_biotype: protein_coding
description:
  Probable CinA-related protein; Hypothetical 17.2 kDa protein 1 in recA 5region. TREMBL:Q9KUH9: 54% identity, 64% similarity CinA is the first gene in the competence-inducible (cin) operon, and is thought to be specifically required at some stage in the process of transformation [1]. This is a C-terminal region of putative competence-damaged proteins from the cin operon InterPro:IPR008136; CinA_C. Pfam: PF02464; CinA cinA_cterm: competence/damage-inducible p No signal peptide. No transmembrane helices; High confidence in function and specificity.


ensembl_gene_id: azo0509
symbol: azo0509
gene_biotype: protein_coding
description:
  Putative phosphatidylglycerophosphatase A; Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG).


ensembl_gene_id: azo0510
symbol: thiL
gene_biotype: protein_coding
description:
  Thiamine-phosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.


ensembl_gene_id: azo0512
symbol: rnfE1
gene_biotype: protein_coding
description:
  Probable electron transport complex protein RnfE; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.


ensembl_gene_id: azo0513
symbol: rnfG1
gene_biotype: protein_coding
description:
  Probable electron transport complex protein RnfG; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family.


ensembl_gene_id: azo0514
symbol: rnfD1
gene_biotype: protein_coding
description:
  Probable electron transport complex protein RnfD; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.


ensembl_gene_id: azo0515
symbol: rnfC1
gene_biotype: protein_coding
description:
  Probable electronen transport complex protein RnfC; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.


ensembl_gene_id: azo0516
symbol: rnfB1
gene_biotype: protein_coding
description:
  Probable electron transport complex protein RnfB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.


ensembl_gene_id: azo0517
symbol: rnfA1
gene_biotype: protein_coding
description:
  Probable electron transport complex protein RnfA; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.


ensembl_gene_id: azo0518
symbol: nifL
gene_biotype: protein_coding
description:
  Nitrogen fixation regulatory protein (EC 2.7.3.-). Required for the inhibition of nifA activity in response to oxygen and low level of fixed nitrogen. Similar to SWISSPROT: sprot|NIFL_AZOVI (41% Azotobacter vinelandii,nitrogen fixation regulatory protein (EC 2.7.3.-), NifL) InterPro: IPR003661 His_kinA_N. The histidine kinase A (phosphoacceptor) N-terminal domain is a dimerisation and phosphoacceptor domain of histidine kinases. It has been found in bacterial sensor protein/histidine kinases. IPR000014 PAS. PAS domains are involved in many signalling proteins where they are used as a s [...]


ensembl_gene_id: azo0519
symbol: nifA
gene_biotype: protein_coding
description:
  Nif-specific regulatory protein. NIFA A TRANSCRIPTIONAL ACTIVATOR IS REQUIRED FOR ACTIVATION OF MOST NIF OPERONS WHICH ARE DIRECTLY INVOLVED IN NITROGEN FIXATION. NIFA INTERACTS WITH SIGMA-54. InterPro: Sigma-54 factor interaction domain; High confidence in function and specificity.


ensembl_gene_id: azo0520
symbol: azo0520
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to Gmet02000900 of Geobacter metallireducens of 45% (gi|48846570|ref|ZP_00300831.1|(NBCI ENTREZ)). No domains predicted. Signal peptide present. No TMH reported present; Conserved hypothetical protein.


ensembl_gene_id: azo0521
symbol: azo0521
gene_biotype: protein_coding
description:
  Hypothetical secreted protein. No Hits in the PDB. No domains predicted. No TMHs. Signal peptide present.


ensembl_gene_id: azo0522
symbol: sodC
gene_biotype: protein_coding
description:
  Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.


ensembl_gene_id: azo0523
symbol: nifB
gene_biotype: protein_coding
description:
  Nitrogen fixation protein; FeMo cofactor biosynthesis protein nifB. PROBABLY INVOLVED IN THE SYNTHESIS OF THE FE-MO COFACTOR; High confidence in function and specificity.


ensembl_gene_id: azo0524
symbol: azo0524
gene_biotype: protein_coding
description:
  Conserved hypothetical ferredoxin. Homology to fdx of P. stuzeri of 57% (trembl|Q93JV5). Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. InterPro: 4Fe-4S ferredoxin iron-sulfur binding domain (IPR001450) Pfam: 4FE-4S binding domain no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo0525
symbol: azo0525
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to an orf of P. stuzeri of 49% (trembl|Q93JV4). Tigrfam: arsC: arsenate reductase. Pfam: ArsC family (PF03960) no signal peptide. no TMHs.


ensembl_gene_id: azo0526
symbol: fprA
gene_biotype: protein_coding
description:
  Probable type A flavoprotein fprA. Homology to frpA of R. capsulatus of 58% (sprot|FPRA_RHOCA) Low-potential electron donor to a number of redox enzymes (Potential). InterPro: Metallo-beta-lactamase superfamily (IPR001279); Flavodoxin (IPR001226) Pfam: Metallo-beta-lactamase superfamily; Flavodoxin no singal peptide no TMHs; Family membership.


ensembl_gene_id: azo0527
symbol: fdxC
gene_biotype: protein_coding
description:
  Ferredoxin IV (FdIV) (Ferredoxin plant-type). Homology to fdxC of R. capsulatus of 62% (FER4_RHOCA). FERREDOXINS ARE IRON-SULFUR PROTEINS THAT TRANSFER ELECTRONS IN A WIDE VARIETY OF METABOLIC REACTIONS. THIS FERREDOXIN PROBABLY PARTICIPATES IN NITROGEN FIXATION. Pfam: 2Fe-2S iron-sulfur clauster binding domain no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo0528
symbol: fdxD
gene_biotype: protein_coding
description:
  Ferredoxin V (FdV) (Ferredoxin plant-type). FERREDOXINS ARE IRON-SULFUR PROTEINS THAT TRANSFER ELECTRONS IN A WIDE VARIETY OF METABOLIC REACTIONS. THIS FERREDOXIN PROBABLY PARTICIPATES IN NITROGEN FIXATION. InterPro: Ferredoxin; High confidence in function and specificity.


ensembl_gene_id: azo0529
symbol: nifQ
gene_biotype: protein_coding
description:
  Putative NifQ protein. Homology to nifQ of A. vinelandii of 33% (sprot|NIFQ_AZOVI(SRS) NifQ is involved in early stages of the biosynthesis of the iron-molybdenum cofactor (FeMo-co), which is an integral part of the active site of dinitrogenase [2]. The conserved C-terminal cysteine residues may be involved in metal binding. Pfam: NifQ no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo0530
symbol: draG1
gene_biotype: protein_coding
description:
  Probable ADP-ribosyl-[dinitrogen reductase] hydrolase. Homology to draG of R. rubrum of 44% (sprot|DRAG_RHORU) Involved in the regulation of the nitrogen fixation activity by the reversible ADP-ribosylation of the dinitrogenase reductase component of the nitrogenase enzyme complex. The ADP-ribosyltransferase (DraT) transfers the ADP-ribose group from NAD to dinitrogenase reductase. The ADP-ribose group is removed through the action of the ADP-ribosylglycohydrolase (DraG). Pfam: ADP-ribosylglycohydrolase no signal peptide no TMHs.


ensembl_gene_id: azo0531
symbol: azo0531
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to PA2778 of P.aeruginosa of 39% (trembl|Q9I065(SRS)) Has Signal Peptide. No TMH present. Has PF03412:Peptidase C39 family;Lantibiotic and non-lantibiotic bacteriocins are synthesised as precursor peptides containing N-terminal extensions (leader peptides) which are cleaved off during maturation. Most non-lantibiotics and also some lantibiotics have leader peptides of the so-called double-glycine type. These leader peptides share consensus sequences and also a common processing site with two conserved glycine residues in positions -1 an [...]


ensembl_gene_id: azo0532
symbol: azo0532
gene_biotype: protein_coding
description:
  Hypothetical membrane protein. No homology of the entire protein with the data bank. No domains predicted. No signal peptide. 1 TMH.


ensembl_gene_id: azo0533
symbol: yjdF
gene_biotype: protein_coding
description:
  Hypothetical protein yjdF,44% identity (56% similarity) to TrEMBL;Q8XDT2. SwissProt;P39270. Signal P reporting Signal peptide present. TMHMM2 reporting 3 TMH's present.


ensembl_gene_id: azo0534
symbol: azo0534
gene_biotype: protein_coding
description:
  Hypothetical membrane protein. TREMBL:Q83LX6: 27% identity, 42% similarity. similarity to E.coli ybeT. some,to yeast skt5 and s.pombe spac24b11.10c InterPro; IPR006597; Sel_like. InterPro; IPR001440; TPR. InterPro; IPR008941; TPR-like Pfam:DsbD:Cytochrome C biogenesis protein trans SMART:SM00671; SEL1 Signal peptide present (Signal P) transmembrane helices: 5 (TMHMM predicted); Function unclear.


ensembl_gene_id: azo0535
symbol: dcrH1
gene_biotype: protein_coding
description:
  Putative hemerythrin-like protein; DcrH: hemerythrin protein,is a transmembrane methyl-accepting protein probably involved in bacterial chemotaxis. 36% Hemerythrin. Hemerythrin family non-heme Pfam:PF01814; Hemerythrin; 1; High confidence in function and specificity.


ensembl_gene_id: azo0536
symbol: azo0536
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to an orf of Pseudomonas stutzeri of 52% (tremble:Q9EVM9). No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo0537
symbol: draT
gene_biotype: protein_coding
description:
  Putative NAD(+)-dinitrogen-reductase ADP-D-ribosyltransferase (EC 2.4.2.37) (ADP-ribosyltransferase). Homology to draT of R. rubrum of 39% (sprot|DRAT_RHORU(SRS) Involved in the regulation of the nitrogen fixation activity by the reversible ADP-ribosylation of the dinitrogenase reductase component of the nitrogenase enzyme complex. The ADP-ribosyltransferase transfers the ADP-ribose group from NAD to dinitrogenase reductase. The ADP-ribose group is removed through the action of the ADP-ribosylglycohydrolase (DraG). Pfam: DRAT no signal peptide no TMHs; High confidence in function and s [...]


ensembl_gene_id: azo0538
symbol: nifH
gene_biotype: protein_coding
description:
  Putative nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.


ensembl_gene_id: azo0539
symbol: nifD
gene_biotype: protein_coding
description:
  Nitrogenase molybdenum-iron protein alpha chain (EC 1.18.6.1) (Nitrogenase component I) (Dinitrogenase). The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex which has 2 components: the iron protein and the molybdenum-iron protein; High confidence in function and specificity.


ensembl_gene_id: azo0540
symbol: nifK
gene_biotype: protein_coding
description:
  Nitrogenase molybdenum-iron protein beta chain; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family.


ensembl_gene_id: azo0541
symbol: nifT
gene_biotype: protein_coding
description:
  Nitrogen fixation protein [nifT],51% identity(72% Similarity) to SwissProt;P09427, TrEMBL;Q93JU8,57% identity. Has PF06988:NifT/FixU protein(IPR009727);This family consists of several NifT and FixU bacterial proteins. The function of NifT is unknown although it is thought that the protein may be involved in biosynthesis of the FeMo cofactor of nitrogenase although perturbation of nifT expression in K. pneumoniae has only a limited effect on nitrogen fixation. No Signal peptide or TMH present; High confidence in function and specificity.


ensembl_gene_id: azo0542
symbol: fdxN
gene_biotype: protein_coding
description:
  FdxN protein; Ferredoxin. Pubilication: Egner et al., 2001, J Bacteriol 183, 3752-3760 (trembl|Q9F0V6) Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. InterPro: 4Fe-4S ferredoxin iron-sulfur binding domain (IPR001450) Pfam: 4Fe-4S binding daimain no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo0543
symbol: nifY1
gene_biotype: protein_coding
description:
  NifY protein. Homology to nifY of Azoarcus sp. BH72 of 99% (gi|11493644|gb|AF200742.1|AF200742(NBCI ENTREZ)). Pfam: Dinitrogenase iron-molybdenum cofactor. This family contains several NIF (B, Y and X) proteins which are involved in the synthesis of an iron-molybdenum cofactors (FeMo-co) in the dinitrogenase enzyme which catalyses the reduction of dinitrogen to ammonium. No signal peptide predicted. No TMHs; Function unclear.


ensembl_gene_id: azo0544
symbol: azo0544
gene_biotype: protein_coding
description:
  ORF1; Conserved hypothetical protein. Homology to orf1 of Azoarcus sp. BH72 of 100% (gi|11493650|gb|AAG35591.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo0545
symbol: azo0545
gene_biotype: protein_coding
description:
  Putative methyl-accepting chemotaxis protein,Chmtaxis_transd. Pfam: PF00015; MCPsignal. SMART: SM00283; MA. Signal P reporting signal peptide. TMHMM reporting 2 transmembrane helices; Specificity unclear.


ensembl_gene_id: azo0546
symbol: nifM
gene_biotype: protein_coding
description:
  Probable peptidylprolyl isomerase. Homology with nifM of A. chroococcum of 43% (sprot|NIFM_AZOCH) REQUIRED FOR THE ACTIVATION AND STABILIZATION OF THE IRON-COMPONENT (NIFH) OF NITROGENASE. PROBABLE PPIASE. InterPro: PpiC-type peptidyl-prolyl cis-trans isomerase (IPR000297) Pfam: PPIC-type PPIASE domain no signal peptide no TMHs hydrog_prot: hydrogenase maturation pro; High confidence in function and specificity.


ensembl_gene_id: azo0547
symbol: nifZ
gene_biotype: protein_coding
description:
  Nitrogen Fixation protein[nifZ], 51% identity (67% similarity) SwissProt;P14889,66% similarity to SwissProt;P23124. Has PF04319:NifZ domain;(IPR007415)This short protein is found in the nif (nitrogen fixation) operon. Its function is unknown but is probably involved in nitrogen fixation or regulating some component of this process. This 75 residue region is presumed to be a domain. It is found in isolation in some members and in the amino terminal half of the longer NifZ proteins. No Signal Peptide Or TMH reported Present; High confidence in function and specificity.


ensembl_gene_id: azo0548
symbol: nifW
gene_biotype: protein_coding
description:
  Nitrogen fixation protein NifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.


ensembl_gene_id: azo0549
symbol: azo0549
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to orf8 of Azotobacter vinelandii of 36% (tremble:Q44542). No domains predicted. No Signal peptide or TMH present.


ensembl_gene_id: azo0550
symbol: nifP
gene_biotype: protein_coding
description:
  Serine acetyltransferase (EC 2.3.1.30). Homology to nifP of A. chrooccum of 58% (pir|D43706). PROBABLE SERINE ACETYLTRANSFERASE REQUIRED FOR OPTIMIZING THE EXPRESSION OF NITROGENASE ACTIVITY. NIFP MAY BE REQUIRED TO BOOST RATES OF SYNTHESIS OR INTRACELLULAR CONCENTRATIONS OF CYSTEINE OR METHIONINE. InterPro: Bacterial transferase hexapeptide repeat (IPR001451) no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo0551
symbol: nifV
gene_biotype: protein_coding
description:
  Homocitrate synthase is involved in the biosynthesis of the iron-molybdenum cofactor of nitrogenase and catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate into homocitrate. Similar to sprot|NIFV_AZOVI (51%) and to sprot|NIV1_ANASP (42%). Pfam (PF00682): HMG-CoA Lyase-like family InterPro (PS00815): Alpha-isopropylmalate and homocitrate synthase; High confidence in function and specificity; Belongs to the alpha-IPM synthase/homocitrate synthase family.


ensembl_gene_id: azo0552
symbol: nifS
gene_biotype: protein_coding
description:
  Cysteine desulphurase; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.


ensembl_gene_id: azo0553
symbol: nifU
gene_biotype: protein_coding
description:
  Probable nitrogen fixation protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.


ensembl_gene_id: azo0554
symbol: hesB
gene_biotype: protein_coding
description:
  HesB/yadR/yfhF family protein, 45% identity to TrEMBL;Q9KJL2,Q6HRJ0. SwissProt;P37026(41% identity) Has PF01521, HesB-like domain;IPR000361, HesB_yadR_yfhF;This family includes HesB which may be involved in nitrogen fixation; the hesB gene is expressed only under nitrogen fixation conditions. Other members of this family include various hypothetical proteins of which P46847 and NP31774 also contains NifU-like domains NifU which is also involved in nitrogen fixation. In the gram-negative soil bacterium Rhizobium etli, the hesB-like gene iscN is required for nitrogen fixation; High confi [...]


ensembl_gene_id: azo0555
symbol: azo0555
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to Daro03002610 of Dechloromonas aromatica of 39% (gi|41724013|ref|ZP_00150903.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo0556
symbol: fdxB
gene_biotype: protein_coding
description:
  Probable ferredoxin. Homology to fdxB of R. capsulatus of 45% (sprot|FER3_RHOCA) Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. InterPro: 4Fe-4S ferredoxin iron-sulfur binding domain (IPR001450) Pfam: 4Fe-4S binding domain no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo0557
symbol: azo0557
gene_biotype: protein_coding
description:
  Conserved hypothetical protein Shows similarity to hypothetical 7.7 kDa protein in fixX 3'region (ORF1) of Azorhizobium caulinodans. TIGR00162: conserved hypothetical protein.


ensembl_gene_id: azo0558
symbol: azo0558
gene_biotype: protein_coding
description:
  Conserved hypothetical protein(Has probable Nif-associated protein function)41% identity(62% similarity) to TrEMBL;Q9KJL5. Has PF03270(IPR004952):Protein of unknown function, DUF269;Members of this family may be involved in nitrogen fixation, since they are found within nitrogen fixation operons. NO Signal Peptide or TMH present; Family membership.


ensembl_gene_id: azo0559
symbol: azo0559
gene_biotype: protein_coding
description:
  Hypothetical sigma-E factor regulatory protein,best similarity to SWISSPROT: sprot|Y850_HAEIN (Haemophilus influenzae, hypothetical protein hi0850) / sprot|RSEC_ECOLI (23% Escherichia coli, sigma-e factor regulatory protein RseC). TMHMM reporting 2 transmembrane helices.


ensembl_gene_id: azo0560
symbol: nifX
gene_biotype: protein_coding
description:
  Conserved hypothetical NifX protein. Homology to nifX of Azotobacter vinelandii of 47% (gi|128328|sp|P14887|NIFX_AZOVI(NBCI ENTREZ)). Pfam: Dinitrogenase iron-molybdenum cofactor. This family contains several NIF (B, Y and X) proteins which are involved in the synthesis of an iron-molybdenum cofactors (FeMo-co) in the dinitrogenase enzyme which catalyses the reduction of dinitrogen to ammonium. No signal peptide predicted. No TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0561
symbol: nifN
gene_biotype: protein_coding
description:
  Probable nitrogenase iron-molybdenum cofactor biosynthesis protein NifN. Homology to nifN of A. vielandii of 60% (sprot|NIFN_AZOVI). This protein may play a role in the biosynthesis of the prosthetic group of nitrogenase (FeMo cofactor). InterPro: Oxidoreductase nitrogenase component 1 (IPR000510) Pfam: Nitrogenease component 1 type oxidoreductase probable signal peptide no TMHs; High confidence in function and specificity; Belongs to the NifD/NifK/NifE/NifN family.


ensembl_gene_id: azo0562
symbol: nifE
gene_biotype: protein_coding
description:
  Nitrogenase iron-molybdenum cofactor biosynthesis protein NifE. Homology to nifE of A. vielandii of 70% (sprot|NIFE_AZOVI). This protein may play a role in the biosynthesis of the prosthetic group of nitrogenase (FeMo cofactor). InterPro: Oxidoreductase nitrogenase component 1 (IPR000510) Pfam: Nitrogenease component 1 type oxidoreductase no signal peptide no TMHs; High confidence in function and specificity; Belongs to the NifD/NifK/NifE/NifN family.


ensembl_gene_id: azo0563
symbol: azo0563
gene_biotype: protein_coding
description:
  Probale Hypothetical protein. Very Weak homology spanning the entire length of protein in the data base. No Significant domains,Features,TMH's or Signal Peptide present; Function unclear.


ensembl_gene_id: azo0564
symbol: azo0564
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Has PF05484:LRV protein FeS4 cluster(IPR008665);This Iron sulphur cluster is found at the N-terminus of some proteins containing LRV repeats. Has 6,(IPR004830) PF01816:Leucine rich repeat variant;The function of this repeat is unknown. It has an unusual structure of two helices. One is an alpha helix,the other is the much rarer 3-10 helix; Function unclear.


ensembl_gene_id: azo0566
symbol: azo0566
gene_biotype: protein_coding
description:
  Hypothetical membrane protein. No homology to the data bank. No domains predicted. No signal peptide. 1 TMH.


ensembl_gene_id: azo0567
symbol: azo0567
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to TREMBL:Q82SF8 (45% identity); TREMBL:Q7P0W9 (43% identity); TREMBL:Q8XV73 (40% identity).


ensembl_gene_id: azo0570
symbol: azo0570
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to TREMBL:Q89KB0 (34% identity); TREMBL:Q8XXG5 (34% identity).


ensembl_gene_id: azo0571
symbol: ruvC
gene_biotype: protein_coding
description:
  Crossover junction endodeoxyribonuclease; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.


ensembl_gene_id: azo0572
symbol: ybjQ
gene_biotype: protein_coding
description:
  Conserved hypothetical protein, ybjQ, 65% identity to SwissProt;P75819. SwiisProt;Q8XGV2(66% identity). TrEMBL;Q83LS2(65% identity) Has PF01906, Domain of unknown function DUF74;IPR002765; Members of this protein family have no known function. The domain is about 100 amino acids long and found in prokaryotes; High confidence in function and specificity; Belongs to the UPF0145 family.


ensembl_gene_id: azo0573
symbol: azo0573
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Hamology to PA3358 of P. aeruginosa of 56% InterPro: Integral membrane protein DUF6 Tigrfam: 2A78: Carboxylate/Amino Acid/Amine Transporter Pfam: Integral membrane protein DUF6 no signal peptide probable 10 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0574
symbol: yebC
gene_biotype: protein_coding
description:
  Conserved hypothetical protein,yebC,48% identity (63% similarity) to SwissProt;Q8FGR1,P24237,Q8XFD4. TrEMBL;Q9S4S9. Has PF01709, Domain of unknown function DUF28;IPR002876; This domain is found in bacterial and yeast proteins it compromises the entire length or central region of most of the proteins in the family, all of which are hypothetical with no known function. The average length of this domain is approximately 230 amino acids long; High confidence in function and specificity.


ensembl_gene_id: azo0575
symbol: azo0575
gene_biotype: protein_coding
description:
  Hypothetical secreted protein. No homology to the data bank. No domains predicted. No TMHs. Signal peptide Present.


ensembl_gene_id: azo0576
symbol: azo0576
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to yjgR of E. coli of 66% (sprot|YJGR_ECOLI). no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo0578
symbol: emrY
gene_biotype: protein_coding
description:
  Multidrug resistance protein B homolog. TRANSLOCASE THAT CONFERS RESISTANCE TO SUBSTANCES OF HIGH HYDROPHOBICITY (BY SIMILARITY). Presence of signal peptide and 14 transmembrane helices. Presence of DUF domains,CbiM, and bacterial cytochrome ubiquinol oxidase like domains efflux_EmrB: drug resistance transport; High confidence in function and specificity.


ensembl_gene_id: azo0579
symbol: azo0579
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to RSc2187 of R. solanacerarum of 44%. Tigrfam: 2A78: Carboxylate/Amino Acid/Amine Transporter Pfam: Intergral membrane protein DUF6 no signal peptide probable 6 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0580
symbol: azo0580
gene_biotype: protein_coding
description:
  Putative methyl-accepting chemotaxis transducer,Chmtaxis_transd. Pfam: PF00015; MCPsignal. SMART: SM00283; MA. Signal P reporting signal peptide. TMHMM reporting 1 transmembrane helices. Methyl-accepting chemotaxis serine transducer. CHEMOTACTIC-SIGNAL TRANSDUCERS RESPOND TO CHANGES IN THE CONCENTRATION OF ATTRACTANTS AND REPELLENTS IN THE ENVIRONMENT TRANSDUCE A SIGNAL FROM THE OUTSIDE TO THE INSIDE OF THE CELL AND FACILITATE SENSORY ADAPTATION THROUGH THE VARIATION OF THE LEVEL OF METHYLATION. ATTRACTANTS INCREASE THE LEVEL OF METHYLATION WHILE REPELLENTS DECREASE THE LEVEL OF METHYL [...]


ensembl_gene_id: azo0581
symbol: araJ
gene_biotype: protein_coding
description:
  Putative transmembrane efflux precursor protein; May be involved in either the transport or processing of arabinose polymers.Belongs to the major facilitator superfamily. 36% MFS.IPR005828; Sub_transporter. TMhelix:12; High confidence in function and specificity.


ensembl_gene_id: azo0582
symbol: azo0582
gene_biotype: protein_coding
description:
  Permease,member of the Major Facilitator Superfamiliy (MFS)transporters. MFS are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. 25% MFS.IPR005828; Sub_transporter.IPR005829; Sug_transporter.InterPro: General substrate transporters Pfam:PF00083; sugar_tr; 1. TMHelix: 12; Specificity unclear.


ensembl_gene_id: azo0583
symbol: lysR
gene_biotype: protein_coding
description:
  Putative transcriptional regulator, LysR family,; Family membership; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: azo0584
symbol: metF
gene_biotype: protein_coding
description:
  5,10-methylenetetrahydrofolate reductase (FADH2; 510-methylenetetrahydrofolate reductase InterPro: Methylenetetrahydrofolate reductase fadh2: 510-methylenetetrahydrofolate reductase; High confidence in function and specificity; Belongs to the methylenetetrahydrofolate reductase family.


ensembl_gene_id: azo0585
symbol: tlyA
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Probable hemolysin.46% identity to TrEMBL;Q7NQ39. Has PF01728, FtsJ-like methyltransferase; IPR002877,RrmJFtsJ_mtfrase; This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesised that the N-terminal domain of N [...]


ensembl_gene_id: azo0586
symbol: azo0586
gene_biotype: protein_coding
description:
  Hypothetical protein. Weak Homology with hits in the Database. No domains, repeats, motifs or features could be predicted above threshold value.


ensembl_gene_id: azo0587
symbol: acyH
gene_biotype: protein_coding
description:
  Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.


ensembl_gene_id: azo0588
symbol: azo0588
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to PA0776 of Pseudomonas aeruginosa of 30% (trembl|Q9I5G2(SRS)) No domains predicted Signal Peptide present. No TMH present; Conserved hypothetical protein.


ensembl_gene_id: azo0589
symbol: metK
gene_biotype: protein_coding
description:
  Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.


ensembl_gene_id: azo0590
symbol: htrB
gene_biotype: protein_coding
description:
  Putative lipid A biosynthesis lauroyl acyltransferase. Homology to htrB of E. coli of 27% (sprot|HTRB_ECOLI) ACYLATES THE INTERMEDIATE (KDO)2-LIPID IVA TO FORM (KDO)2-(LAUROYL)-LIPID IVA. HAS 10 FOLD SELECTIVITY FOR LAUROYL- ACP OVER MYRISTOYL-ACP. Pfam: Bacterial lipid A biosynthesis acyltransferase no singal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo0591
symbol: msbBa
gene_biotype: protein_coding
description:
  Putative Lipid A biosynthesis acyltransferase protein Homology to msbB of of E. coli of 27% (AAA24181). Homology only with the N-terminus. no signal peptide. 1 TMH. Tigrfam: lipid_A_htrB, lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase. Pfam: Lip_A_acyltrans,Bacterial lipid A biosynthesis acyltransferase; Family membership.


ensembl_gene_id: azo0592
symbol: msbBb
gene_biotype: protein_coding
description:
  Putative Lipid A biosynthesis acyltransferase protein Homology to.msbB of of E. coli of 27% (AAA24181). Homology only with the N-terminus. no signal peptide. 1 TMH. Tigrfam: lipid_A_htrB, lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase. Pfam: Lip_A_acyltrans,Bacterial lipid A biosynthesis acyltransferase; Function unclear.


ensembl_gene_id: azo0593
symbol: azo0593
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to Daro03000819 of Dechloromonas aromatica of 32% (gi|46140899|ref|ZP_00152594.2|(NBCI ENTREZ)). No domains predicted. signal peptide. 1 TMH; Conserved hypothetical protein.


ensembl_gene_id: azo0594
symbol: dapF
gene_biotype: protein_coding
description:
  DapF protein; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.


ensembl_gene_id: azo0595
symbol: azo0595
gene_biotype: protein_coding
description:
  3',5'-cyclic-nucleotide phosphodiesterase; Conserved hypothetical protein. Coils2 Program reporting presence of 1 Coiled-Coil. Has SMART;SM00065,GAF domain;This domain is present in phytochromes and cGMP-specific phosphodiesterases. cGMP-dependent 3',5'-cyclic phosphodiesterase catalyses the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. A phytochrome is a regulatory photoreceptor which exists in 2 forms that are reversibly interconvertible by light, the PR form that absorbs maximally in the red region of the spectrum, and the PFR form that absorbs maximally  [...]


ensembl_gene_id: azo0596
symbol: xerC
gene_biotype: protein_coding
description:
  Site-specific recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: azo0597
symbol: azo0597
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to ebA3954 of Azoarcus sp. EbN1 of 56% (gnl|keqq|eba:ebA3954(KEGG)). No domains predictied. No signal peptide. No TMHs. helix-turn-helix present.


ensembl_gene_id: azo0598
symbol: azo0598
gene_biotype: protein_coding
description:
  Probable SAM dependent methyl transferase; Hypothetical protein yccW TREMBL:Q8Y3C9: 52% identity, 62% similarity. InterPro; IPR002478; PUA. InterPro; IPR000051; SAM_bind. Pfam:Met_1:Met-10+ like-protein SMART; SM00359 TIGR00095: conserved hypothetical protein No transmembrane helices; High confidence in function and specificity.


ensembl_gene_id: azo0599
symbol: azo0599
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to ebA3957 of Azoarcus sp. EbN1 of 38% (gnl|keqq|eba:ebA3957(KEGG)). No domains predicted. signal peptide. 2 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0600
symbol: azo0600
gene_biotype: protein_coding
description:
  Hypothetical secreted protein. no homology of the entire protein to the data bank. no domains predicted. signal peptide. no TMHs.


ensembl_gene_id: azo0601
symbol: ruvB
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.


ensembl_gene_id: azo0602
symbol: ruvA
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.


ensembl_gene_id: azo0603
symbol: azo0603
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to BP3397 of B. pertussis of 41% (bpe:BP3397(KEGG)). Tigrfam: azlC: azlC protein (azlC). 6 TMHs no signal peptide; Conserved hypothetical protein.


ensembl_gene_id: azo0604
symbol: azo0604
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to RS04896 of Ralstonia solanacearum o 43% (trembl|Q8Y1W8) Has PF06063, Domain of unknown function (DUF931);IPR010337;Family of transmembrane proteins with undetermined function. singal peptide. 2 THMs; Conserved hypothetical protein.


ensembl_gene_id: azo0605
symbol: azo0605
gene_biotype: protein_coding
description:
  Hypothetical protein. Homology to Daro03002672 of Dechloromonas aromatica of 51% (gi|41723577|ref|ZP_00150487.1|(NBCI ENTREZ)). Has PF04023, FeoA domain;IPR007167; This family includes FeoA a small protein, probably involved in Fe2+ transport. This presumed short domain is also found at the C-terminus of a variety of metal dependent transcriptional regulators. This suggests that this domain may be metal-binding. In most cases this is likely to be either iron or manganese. no signal peptide. no TMHs.


ensembl_gene_id: azo0606
symbol: feoB
gene_biotype: protein_coding
description:
  Putative ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.


ensembl_gene_id: azo0607
symbol: azo0607
gene_biotype: protein_coding
description:
  Putative TonB-dependent receptor; Outer membrane TonB-dependent, hydroxamate-type ferrisiderophore receptor. Probably involved in iron transport. 30% TONB_C.IPR000531; TonB_receptor.IPR010105; TonB_siderophor. InterPro: TonB-dependent receptor protein Pfam:PF00593; TonB_dep_Rec; 1. TIGRFAMs:TIGR01783; TonB-siderophor; 1. Signal peptide present; High confidence in function and specificity.


ensembl_gene_id: azo0608
symbol: ybiX
gene_biotype: protein_coding
description:
  Putative PKHD-type hydroxylase protein, 69% Identity(82% simialrity) to SwissProt;P59727,Q8FJM69, (48% identity) Has SMART;SM00702, P4Hc,Prolyl 4-hydroxylase alpha subunit homologues: IPR006620; Pro_4_hyd_alph; Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor. Has PF03171,2OG-Fe(II) oxygenase superfamily;IPR005123;This family contains members of the 2-oxoglutarate  [...]


ensembl_gene_id: azo0609
symbol: gox
gene_biotype: protein_coding
description:
  Probable (S)-2-hydroxy-acid oxidase. Homology to gox of S. oleracea (spinach) of 42% (sprot|GOX_SPIOL). CATALYTIC ACTIVITY: (S)-2-hydroxy-acid + O(2) = 2-oxo acid + H(2)O(2). InterPro: FMN-dependent alpha-hydroxy acid dehydrogenases (IPR000262); Protein binding FMN and related compounds core region (IPR003009) Pfam: FMN-dependent dehydrogenase no signal peptide no TMHs guaA_Cterm: GMP synthase C-terminal d; Family membership.


ensembl_gene_id: azo0610
symbol: oprM2
gene_biotype: protein_coding
description:
  Putative outer membrane efflux protein. Homology to orpM in P. aeruginosa of 36%. Component of an efflux system that confers multidrug or multible antibiotic resistence. Interpro: Outer membran efflux protein Pfam: Outer membran efflux protein signal peptide no TMHs; Family membership.


ensembl_gene_id: azo0611
symbol: macB
gene_biotype: protein_coding
description:
  ATP-binding/permease fusion ABC transporter; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.


ensembl_gene_id: azo0612
symbol: macA
gene_biotype: protein_coding
description:
  Periplasmic component of efflux system; Macrolide-specific efflux protein macA precursor. Efflux transporter for macrolide antibiotics (By similarity). Membrane Fusion Protein (MFP) family; High confidence in function and specificity.


ensembl_gene_id: azo0613
symbol: exbD3
gene_biotype: protein_coding
description:
  Probable fiopolymer transport protein ExbD. Homology to exbD1 of X. campestris of 43%. ExbD is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane. InterPro: Biopolymer transport protein ExbD/TolR Pfam: Biopolymer transport protein ExbD/TolR no signal peptide probable 1 TMH; High confidence in function and specificity.


ensembl_gene_id: azo0614
symbol: exbB2
gene_biotype: protein_coding
description:
  Probable biopolymer transport protein ExbB. Homology to exbB of B. pertussis of 50% ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane. InterPro: MotA/TolQ/ExbB proton channel family Pfam: MotA/TolQ/ExbB proton channel family no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo0615
symbol: tonB1
gene_biotype: protein_coding
description:
  Putative TonB protein. Homology to tonb2 of P. aeruginosa of 39% (TREMBL:Q9RMT3). To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors Pfam: Gram-negative bacterial TonB protein no signal peptide 1 TMH; Function unclear.


ensembl_gene_id: azo0617
symbol: bfd
gene_biotype: protein_coding
description:
  Bacterioferritin-associated ferredoxin. Homology to psto4159 of P. syringae of 33% (trembl|Q87XL9). SEEMS TO ASSOCIATE WITH BFR; COULD BE A GENERAL REDOX AND/OR REGULATORY COMPONENT PARTICIPATING IN THE IRON STORAGE MOBILIZATION FUNCTIONS OF BFR. COULD PARTICIPATE IN THE RELEASE OR THE DELIVERY OF IRON FROM/TO BACTERIOFERRITIN (OR OTHER IRON COMPLEXES). Pfam: BFD-like [2Fe-2S] binding domain no signal peptide no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0618
symbol: azo0618
gene_biotype: protein_coding
description:
  Putative hemin uptake protein; 47% DUF1008. Pfam:PF06228; DUF1008; 1; High confidence in function and specificity.


ensembl_gene_id: azo0619
symbol: azo0619
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to TREMBL:Q8Y2F3 (57% identity); TREMBL:Q7VVV4 (55% identity); TREMBL:Q9I111 (53% identity). Pfam (FAA_hydrolase): Fumarylacetoacetate (FAA) hydrolase family.


ensembl_gene_id: azo0620
symbol: azo0620
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to an orf of G. sulfurreducens of 34% (tremblnew|AAR35905(SRS)). No domains predicted. Signal peptide. No TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0621
symbol: azo0621
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to ebA1833 of Azoarcus sp. EbN1 of 48% (gnl|keqq|eba:ebA1833(KEGG)). No domains predicted. Signal peptide Present. No TMH present; Conserved hypothetical protein.


ensembl_gene_id: azo0622
symbol: azo0622
gene_biotype: protein_coding
description:
  Conserved hypothetical signaling protein. Homology to ebA1830 of Azoarcus sp. EbN1 of 63% (gnl|keqq|eba:ebA1830(KEGG)). Pfam: PF00990 GGDEF domain. PF00989 PAS domain. PF00785 PAC motif. PF00563 EAL domain. PF00672 HAMP. TIGRFAM:TIGR00229 PAS domain S-box. TIGR00254 putative diguanylate cyclase (GGDEF) domain. TMHMM reporting 2 transmembrane helices of which one is in the signal peptide. Signal peptide present; Conserved hypothetical protein.


ensembl_gene_id: azo0623
symbol: matA
gene_biotype: protein_coding
description:
  Putative malonyl-CoA decarboxylase; Catalyzes the conversion of malonyl-CoA to acetyl-CoA. In the fatty acid biosynthesis MCD selectively removes malonyl-CoA and thus assures that methyl-malonyl-CoA is the only chain elongating substrate for fatty acid synthase and that fatty acids with multiple methyl side chains are produced. 40% Malonyl_CoA_deC. Pfam:PF05292; MCD; 1; High confidence in function and specificity.


ensembl_gene_id: azo0624
symbol: azo0624
gene_biotype: protein_coding
description:
  PAS/PAC-domain containing protein, shows good similarity only to parts of other proteins (mostly sensor kinases). This suggests that there normally should be a kinase domain and therefore the protein is not complete. Also the downstream response regulator gives a hint for this suggestion. InterPro: IPR000014 PAS_domain. IPR001610 PAC motif. TIGRFAM: TIGR00229 PAS domain S-box. Signal P reporting signal peptide. TMHMM reporting 2 transmembrane helices.


ensembl_gene_id: azo0625
symbol: azo0625
gene_biotype: protein_coding
description:
  Hypothetical two-component system response regulator, very low similarity to a part of YehT: SWISSPROT: sprot|YEHT_ECOLI (16% Escherichia coli, YehT) Pfam: PF00072 Response_reg.


ensembl_gene_id: azo0626
symbol: lgt
gene_biotype: protein_coding
description:
  Probable prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.


ensembl_gene_id: azo0627
symbol: yceH
gene_biotype: protein_coding
description:
  Conserved hypothetical protein, 47% identity (59% similarity)to TrEMBL;Q8FIR0.TrEMBL;Q83LI7 Has PF04337,Protein of unknown function, DUF480;IPR007432;This family consists of several proteins of uncharacterised function. Coils2 program reporting presence of Coiled-Coil; High confidence in function and specificity; Belongs to the UPF0502 family.


ensembl_gene_id: azo0629
symbol: azo0629
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to Daro03000403 of Dechloromonas aromatica of 37% (gi|46140621|ref|ZP_00152222.2|(NBCI ENTREZ)). InterPro: Bacterial outer membrane protein (IPR006664). Pfam: OmpA family. signal peptide. no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0630
symbol: azo0630
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to PJS6w01004783 of Polaromonas sp. JS666 of 45% (gi|54028512|ref|ZP_00360661.1|(NBCI ENTREZ)). No domains predicted. signal peptide. TMH in signal peptide; Conserved hypothetical protein.


ensembl_gene_id: azo0632
symbol: ilvD
gene_biotype: protein_coding
description:
  Dihydroxy-acid dehydratase catalyzes the fourth step in the biosynthesis of isoleucine and valine, the dehydratation of 2,3-dihydroxy-isovaleic acid into alpha-ketoisovaleric acid. Similar to sprot|ILVD_PSEAE (74%) and sprot|ILVD_ECOL6 (72%). TIGRfam (TIGR00110): Dihydroxy-acid dehydratase Pfam (PF00920): Dihydroxy-acid and 6-phosphogluconate dehydratase; High confidence in function and specificity; Belongs to the IlvD/Edd family.


ensembl_gene_id: azo0633
symbol: azo0633
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to Mflag03001107 of Methylobacillus flagellatus of 42% (gi|53759956|ref|ZP_00350342.1|(NBCI ENTREZ)). No Signal peptide or TMH present. No domains predicted.


ensembl_gene_id: azo0634
symbol: azo0634
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.


ensembl_gene_id: azo0635
symbol: azo0635
gene_biotype: protein_coding
description:
  Hypothetical protein, 72% identity(81% similarity) to TrEMBL;Q82TJ8. TrEMBL;Q8XWR7(62% identity). Has PF04543, Family of unknown function (DUF589);IPR007628; Family of uncharacterised proteins; Function unclear.


ensembl_gene_id: azo0636
symbol: azo0636
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. TREMBL:Q82TJ9: 43% identity, 59% similarity InterPro:IPR002781; DUF81. Pfam:PF01925; DUF81 no signal peptide. 8 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0637
symbol: azo0637
gene_biotype: protein_coding
description:
  Hypothetical protein Extremely poor homology with hits in the DB. NO features/signal Peptide/Domains present.


ensembl_gene_id: azo0638
symbol: azo0638
gene_biotype: protein_coding
description:
  Conserved hypothtecial protein. Homology to Avin02002811 of Azotobacter vinelandii of 50% (gi|23103464|ref|ZP_00089946.1|(NBCI ENTREZ)). InterPro: Domain of unknown function DUF224 (IPR004017). no signal peptide. no TMHs.


ensembl_gene_id: azo0639
symbol: azo0639
gene_biotype: protein_coding
description:
  Hypothetical protein. 22% identity to SwissProt;P45905 No domains, repeats, motifs or features present.


ensembl_gene_id: azo0640
symbol: mntC1
gene_biotype: protein_coding
description:
  Part of the ABC transporter complex mntABC involved in manganese uptake. 41% Similar to the putative periplasmic-binding protein MntC precursor in E.coli. The MntC protein is also involved in the resistance to oxidative stress in N gonorrhoaeae. TREMBL E.coli:Q9F4F6. InterPro:IPR006128; Lipoprotein_4.IPR006127; SBP_bac_9. Pfam:PF01297; SBP_bac_9; 1. Signal peptide present.TMHelix:1 This operon probably is also involved in other cations uptake like Fe,Cu and Zn; High confidence in function and specificity.


ensembl_gene_id: azo0641
symbol: mntB1
gene_biotype: protein_coding
description:
  Putative manganese transport system, permease protein; Part of the ABC transporter complex mntABC involved in manganese import. Probably responsible for the translocation of the substrate across the membrane. Similar to the permease protein, MntB in Synechocystis 6803. 30% IPR001626; ABC_transpt3. Pfam; PF00950; ABC-3; 1. This operon probably is also involved in other cations uptake like Fe,Cu and Zn; High confidence in function and specificity.


ensembl_gene_id: azo0642
symbol: mntA1
gene_biotype: protein_coding
description:
  Manganese transport system ATP-binding protein mntA. This protein is probably a component of a manganese permease a binding protein-dependent ATP-driven transport system (mntABC). Probably responsible for energy coupling to the transport system. 36% AAA_ATPase.IPR003439,AAA ATPase superfamily; ABC_transporter. Pfam: PF00005; ABC_tran; 1. This operon probably is also involved in other cations uptake like Fe,Cu and Zn; High confidence in function and specificity.


ensembl_gene_id: azo0643
symbol: azo0643
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to ebA1811 of Azoarcus sp. EbN1 of 38% (gi|56476415|ref|YP_158004.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. 1 TMH; Conserved hypothetical protein.


ensembl_gene_id: azo0644
symbol: azo0644
gene_biotype: protein_coding
description:
  Putative regulator protein, probably involved in the regulation of cation uptake systems. 32% FUR.IPR009058; Wing_hlx_DNA_bnd. Pfam:PF01475; FUR; 1.Fur family protein 30%; Function unclear.


ensembl_gene_id: azo0645
symbol: azo0645
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Binds the second messenger bis-(3'-5') cyclic dimeric guanosine monophosphate (c-di-GMP). Can bind two c-di-GMP molecules per monomer. May play a role in bacterial second-messenger regulated processes. Binding to c-di-GMP induces a conformational change of the C- and N-termini resulting in the exposure of a highly negative surface on one side of the protein to a possible effector protein.


ensembl_gene_id: azo0646
symbol: azo0646
gene_biotype: protein_coding
description:
  Toxin secretion ABC transporter permease and ATP-binding protein; HlyB-family protein. Similar to TREMBL:Q7WBM7 (50% identity); TREMBL:Q9KKL9 (41% identity); SWISSPROT:P18770 (28% identity). Pfam (PF00005): ABC transporter. Pfam (PF00664): ABC transporter transmembrane region. TMHMM reporting four transmembrane helices. TC (3.A.1.109.3): LapA adhesin protein exporter, LapB; High confidence in function and specificity.


ensembl_gene_id: azo0647
symbol: hylD
gene_biotype: protein_coding
description:
  Putative HylD family secretion protein. Homology to hylD of E. coli of 24% (sprot|HLY4_ECOLI) Involved in the transport of hemolysin A. InterPro: HlyD family secretion protein; Gram-negative bacteril RTX secretion protein D Pfam: HylD family secretion protein no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo0649
symbol: azo0649
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to ebA1795 of Azoarcus sp. EbN1 of 46% (gnl|keqq|eba:ebA1795(KEGG)). No domains predicted. No TMHs.


ensembl_gene_id: azo0650
symbol: azo0650
gene_biotype: protein_coding
description:
  Conserved hypothetical glycosyltransferase. Homology to gsu0991 of G. sulfurreducens of 30% (tremblnew|AAR34318) Pfam: Glycosyl transferase group 1 no signal peptide no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0651
symbol: azo0651
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to ebB52 Azoarcus sp. EbN1 of 40% (gnl|keqq|eba:ebB52(KEGG)). No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo0652
symbol: azo0652
gene_biotype: protein_coding
description:
  Conserved hypothetical GGDF domain protein. Homology to CV0310 of Chromobacterium violaceum of 34% (trembl|Q7P1A3). Has IPR003660_HAMP,SMART;SM00304:This domain is known as the HAMP domain for histidine kinases,adenylyl cyclases, methyl binding proteins and phosphatases. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. Has IPR000160_GGDEF(SMART;SM00267);This domain is found linked to a wide range of non-homologous domains in  [...]


ensembl_gene_id: azo0653
symbol: azo0653
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to BB1185 of Bordetella bronchiseptica of 49% (trembl|Q7WN55(SRS)) Signal peptide present. No TMHs Has PF06035, Bacterial protein of unknown function (DUF920);IPR010319; This family consists of several hypothetical bacterial proteins of unknown function; Conserved hypothetical protein.


ensembl_gene_id: azo0654
symbol: aggA
gene_biotype: protein_coding
description:
  Putative outer membrane efflux protein. Homology to aggA from P. putida of 35%. The OEP family (outer membrane efflux protein) allow export of a variety of substrates in Gram negative bacteria. InterPro: Outer membrane efflux protein Pfam: Outer membrane efflux protein signal peptide no TMHs; Function unclear.


ensembl_gene_id: azo0655
symbol: azo0655
gene_biotype: protein_coding
description:
  Putative two-component sensor histidine kinase protein. TrEMBL; Q87XU6(47% identity, 64% similarity),Q6F9J5(43% identity,61% similarity),Q6NAD6(44% Identity,61% similarity). TMHMM2 reporting 2 TMH's present. No Signal peptide Present. Has PF02133;Permease for cytosine/purines, uracil, thiamine, allantoin: IPR001248;Cyt_pur_permease:The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have [...]


ensembl_gene_id: azo0656
symbol: azo0656
gene_biotype: protein_coding
description:
  Putative transcriptional regulator, LuxR family,Response_reg. IPR000792; HTH_LuxR. Pfam: PF00072; response_reg. PF00196; GerE. SMART: SM00448; REC. SM00421; HTH_LUXR. HTH reporting reporting nucleic acid binding motif; Family membership.


ensembl_gene_id: azo0657
symbol: azo0657
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to Raeut03005995 of Ralstonia eutropha of 34% (gi|53760601|ref|ZP_00350538.1|(NBCI ENTREZ)). No domains predicted. No signal peptide. 10 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0658
symbol: azo0658
gene_biotype: protein_coding
description:
  Hypothetical membrane protein. No homology of the entire protein to the data bank. No domains predicted. No signal peptide. 12 TMHs.


ensembl_gene_id: azo0659
symbol: gor
gene_biotype: protein_coding
description:
  Probable glutathione-disulfide reductase. Homology to gor of E. coli of 53% (sprot|GSHR_ECOLI). Maintain high levels of reduced glutathione in the cytosol. InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR001327); NAD binding site (IPR000205); Pyridine nuclotide-disulfide oxidoreductase dimerisation doamin (IPR004099); Pyridine nucleotide-disulphide oxidoreductase, class I (IPR001100) Pfam: Pyridine nuccleotide-dusulfphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase dimerisation domain no signal peptide no TMHs; High confidence in function and [...]


ensembl_gene_id: azo0660
symbol: azo0660
gene_biotype: protein_coding
description:
  ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs. Similar to TREMBL:Q87G83 (52% identity); TREMBL:Q9K1A3 (61% identity); SWISSPROT:Q57180 (60% identity). Pfam (PF00005): ABC transporter. TMHMM reporting five transmembrane helices. TC (3.A.1): The ATP-binding Cassette (ABC [...]


ensembl_gene_id: azo0661
symbol: azo0661
gene_biotype: protein_coding
description:
  Hypothetical protein ygjP. TREMBL:Q83JJ6: 60% identity,74% similarity (probable metal dependent hydrolase) Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines InterPro:IPR002725; DUF45. Pfam:PF01863; DUF45 Non secretory protein with probability of signal peptide being 0.243 No transmembrane helices gmhA: phosphoheptose isomerase; High confidence in function and specificity.


ensembl_gene_id: azo0662
symbol: azo0662
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to bA4595 of Azoarcus sp. EbN1 of 52% (gnl|keqq|eba:ebA4595(KEGG)). No domains predicted. No TMHs. Signal Peptide present; Conserved hypothetical protein.


ensembl_gene_id: azo0663
symbol: azo0663
gene_biotype: protein_coding
description:
  Probable CDP-alcohol phosphatidyltransferase family protein; Catalysis of the reaction: CDP + alcohol = CMP + phosphatidyl alcohol. Entry name Q8PQ18 Primary accession number: Q8PQ18 InterPro IPR000462; CDP-OH_P_trans. Pfam PF01066; CDP-OH_P_transf; 1. Identities = 114/203 (56%),Prediction: Signal peptide Signal peptide probability: 0.988 Number of predicted TMHs: 3; Family membership.


ensembl_gene_id: azo0664
symbol: azo0664
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Similar to TREMBL:Q87TY0 (64% identity); TREMBL:Q8PQ17 (61% identity); SWISSPROT:P76092 (55% identity).


ensembl_gene_id: azo0665
symbol: azo0665
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Entry name:- Q9I0U5 Primary accession number:-Q9I0U5 InterPro:- IPR008934; AcPase_VanPerase. IPR000340; DS_phosphatase. IPR000326; PA_PTPase. Number of predicted TMHs: 8 Prediction: Non-secretory protein Signal peptide probability: 0.061 IPR000387; TYR_phosphatase. Pfam PF00782; DSPc; 1. PF01569; PAP2; 1. Identity:- 58%.


ensembl_gene_id: azo0666
symbol: azo0666
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to PA2538 of Pseudomonas aeruginosa of 36% (trembl|Q9I0U6). No domains predicted. No signal peptide. 3 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0667
symbol: azo0667
gene_biotype: protein_coding
description:
  Putative acyltransferase; FUNCTION: Converts lysophosphatidic acid (LPA) into phosphatidic acid by incorporating an acyl moiety at the 2 position. This enzyme can utilize either acyl-CoA or acyl-acyl carrier protein as the fatty acyl donor. CATALYTIC ACTIVITY: Acyl-CoA + 1-acyl-sn-glycerol 3-phosphate = CoA + 1,2-diacyl-sn-glycerol 3-phosphate. Entry name:-SWISSPROT:PLSC_ECOLI Prim. accession # P26647 InterPro:-IPR002123; Acyltransferase. IPR004552; AGP_acyltrn. Pfam:-PF01553; Acyltransferase; 1. Identities = 42/127 (33%) Prediction: Non-secretory protein Signal peptide probability: 0. [...]


ensembl_gene_id: azo0668
symbol: azo0668
gene_biotype: protein_coding
description:
  Conserved hypothetical phoshpatidate cytidyltransferase. Homology to pa2536 of P. aeruginosa (trembl|Q9I0U8). Phosphatidate cytidylyltransferase is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol Pfam: Phospatidate cytidyltransferase signal peptide 7 TMHs InterPro: Phosphatidate cytidylyltransferase stp: serine transporter; Family membership.


ensembl_gene_id: azo0669
symbol: napC1
gene_biotype: protein_coding
description:
  Probable cytochrome c-type protein NapC. Homology to napC of r. sphaeroides of 67% (sprot|NAPC_RHOSH). MEDIATES ELECTRON FLOW FROM QUINONES TO THE NAPAB COMPLEX. signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo0670
symbol: napB1
gene_biotype: protein_coding
description:
  Probable diheme cytochrome C; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family.


ensembl_gene_id: azo0671
symbol: napA1
gene_biotype: protein_coding
description:
  Nitrate reductase; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.


ensembl_gene_id: azo0672
symbol: napD1
gene_biotype: protein_coding
description:
  Putative NapD protein; Chaperone for NapA, the catalytic subunit of the periplasmic nitrate reductase. It binds directly and specifically to the twin- arginine signal peptide of NapA, preventing premature interaction with the Tat translocase and premature export.


ensembl_gene_id: azo0673
symbol: napE
gene_biotype: protein_coding
description:
  Putative periplasmic nitrate reductase accessory protein NapE. Homology to napE of R. sphaeroides of 36% (trembl|O88159). Pfam: Periplasmic nitrate reductase protein NapE (PF06796) This family consists of several bacterial periplasmic nitrate reductase NapE proteins. NapE is thought to be a transmembrane protein of the reductase. Interpro: Periplasmic nitrate reductase protein NapE (IPR010649) no signal peptide 1 TMH; Family membership.


ensembl_gene_id: azo0674
symbol: amiC2
gene_biotype: protein_coding
description:
  Putative aliphatic amidase expression-regulating protein; AmiC regulates the expression of the inducible aliphatic amidase activity in Pseudomonas aeruginosa. Similar to trembl|Q87VQ0 (80%) and to sprot|AMIC_PSEAE (27%). Pfam (PF01094): Receptor family ligand binding region SignalP reporting Signal peptide; Specificity unclear.


ensembl_gene_id: azo0675
symbol: azo0675
gene_biotype: protein_coding
description:
  ABC transporter permease protein; Branched-chain amino acid transport system typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system.The integral inner-membrane proteins translocate the substrate across the membrane. Similar to trembl|Q87VP9 (50%)and to pir|AB0146 (48%). Pfam (PF02653): Binding-system dependent bacterial transporters (araH, livH/limM families) TMHMM reporting nine Tmhelix. SignalP reporting  [...]


ensembl_gene_id: azo0676
symbol: urtC
gene_biotype: protein_coding
description:
  Probable ABC transporter, membrane spanning protein. Homology to urtC of Anabaena sp. of 41% (involved in urea transport). Part of the binding-protein-dependent transport system. Probably responsible for the translocation of the substrates across the membrane. InterPro: Binding-system dependent bacterial transporters (araH livH/limM families) Pfam: Branched-chain amino acid transport system signal peptide probable 9 TMHs; Function unclear.


ensembl_gene_id: azo0677
symbol: urtD
gene_biotype: protein_coding
description:
  Conserved hypothetical ABC transporter, ATP binding protein. Homology to pp4844 of P. putida of 70% (trembl|Q88DI1). Probable component of a branched-chain amino-acid transport system. Pfam: ABC-Transporter no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo0678
symbol: urtE
gene_biotype: protein_coding
description:
  ATP-binding cassette (ABC) transporters are multidomain membrane proteins, responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q88DI0 (59%) and to sprot|BRAG_PSEAE (35%). Pfam: ABC transporter Smart: AAA ATPases; Specificity unclear.


ensembl_gene_id: azo0679
symbol: nodD
gene_biotype: protein_coding
description:
  Probable nodulation protein,; Function unclear; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: azo0680
symbol: caiD
gene_biotype: protein_coding
description:
  Putative Carnitinyl-CoA dehydratase; Function: Catalyzes the reversible dehydration of L-carnitinyl-CoA to crotobetainyl-CoA. Entry name CAID_ECO57 Primary accession number Q8XA35 InterPro IPR001753; EnCoA_hydrtse. Pfam PF00378; ECH; 1. Identities = 30% Prediction: Non-secretory protein Signal peptide probability: 0.003 Number of predicted TMHs: 0; Family membership.


ensembl_gene_id: azo0681
symbol: azo0681
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to PP2796 of P. putida of 44% (trembl|Q88J53) PF04341,Protein of unknown function, DUF485;IPR007436;This family includes several putative integral membrane proteins. signal peptide 1 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0682
symbol: azo0682
gene_biotype: protein_coding
description:
  Conserved hypothetical sodium:solute symporter: Homology to an orf of P. aeruginosa of 72% (trembl|Q9APX1). Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The solutes transported may be sugars, amino acids, nucleosides, inositols, vitamins,urea or anions, depending on the system. InterPro: Sodium:solute sympor [...]


ensembl_gene_id: azo0683
symbol: ytfL1
gene_biotype: protein_coding
description:
  Probable hemolysin; Hypothetical protein ytfL. TREMBL:Q7NQ98: 61% identity, 78% similarity InterPro IPR002550; CBS. IPR000644; CBS_domain. IPR005170; CorC_transpt-asc. Pfam: PF00571; CBS; 2. PF03471; CorC_HlyC; PF01595; DUF21; gntP: gluconate transporter Signal peptide present (Signal P predicted) Transmembrane helices 4 (TMHMM predicted); High confidence in function and specificity.


ensembl_gene_id: azo0685
symbol: mutB
gene_biotype: protein_coding
description:
  Probable Methylmalonyl-CoA mutase large subunit; FUNCTION: Catalyzes the isomerization of succinyl-CoA to methylmalonyl-CoA during synthesis of propionate from tricarboxylic acid-cycle intermediates (By similarity). ACtivity:- (R)-2-Methylmalonyl-CoA = succinyl-CoA Entry name :- MUTB_PORGI Primary accession number :-Q59677 Identities = 467/679 (68%) InterPro :-IPR006159; Acid_CoA_mut_C. IPR006158; B12-binding. IPR006099; MMCoA_mutase. IPR006098; MMCoA_mutase_N. IPR006100; MMCoA_mutase_sub. Pfam PF02310; B12-binding; 1. PF01642; MM_CoA_mutase; 1. Prediction: Non-secretory protein Signal [...]


ensembl_gene_id: azo0686
symbol: argK
gene_biotype: protein_coding
description:
  Putative LAO/AO transport system kinase. Homology to argK of E. coli (sprot|ARGK_ECOLI). In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase. no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo0687
symbol: pccB
gene_biotype: protein_coding
description:
  Probable propionyl-coa carboxylase beta subunit; Activity:- ATP + propanoyl-CoA + HCO3- = ADP + phosphate + (S)-methylmalonyl-CoA Entry name:-TREMBL:Q8U9Y9 Prim. accession # Q8U9Y9 InterPro:-IPR000438; ACoACC_transB. IPR000022; Carboxyl_trans. Pfam:- PF01039; Carboxyl_trans; 1. Identities = 363/511 (71%) Number of predicted TMHs: 0; Family membership.


ensembl_gene_id: azo0688
symbol: pccA
gene_biotype: protein_coding
description:
  Probable propionyl-CoA carboxylase alpha chain; Activity:- ATP + propanoyl-CoA + HCO3- = ADP + phosphate + (S)-methylmalonyl-CoA Entry name :- Q8U9Z4 Primary accession number:- Q8U9Z4 InterPro:- IPR001882; Biotin_BS. IPR005482; Biotin_carb_C. IPR000089; Biotin_lipoyl. IPR005481; CPase_L_N. IPR005479; Cphp_synth_L_D2. Pfam:- PF02785; Biotin_carb_C; 1. PF00364; Biotin_lipoyl; 1. PF00289; CPSase_L_chain; 1. PF02786; CPSase_L_D2; 1. Identities = 400/673 (59%) Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0; Family membership.


ensembl_gene_id: azo0689
symbol: azo0689
gene_biotype: protein_coding
description:
  GGEF/EAL/PAS/PAC-domain containing protein, sym; pNGR234a) / TREMBL: trembl|Q7NYX4 (40% Chromobacterium violaceum, cv1148) InterPro: IPR000160 GGDEF. IPR000014 PAS. IPR000700 PAS-assoc_C. IPR001633 EAL. Pfam: PF00990 GGDEF domain. PF00989 PAS domain. PF00785 PAC motif. PF00563 EAL domain. TIGRFAM:TIGR00229 PAS domain S-box. TIGR00254 putative diguanylate cyclase (GGDEF) domain.


ensembl_gene_id: azo0690
symbol: azo0690
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to PA4929 of P.aeruginosa of 32% (trembl|Q9HUN5(SRS)). Signal P reporting presence of signal peptide. 7 TMHs Has PF07696: 7TMR-DISM extracellular 2; This entry represents one of two distinct types of extracellular domain found in the 7TM-DISM (7TM Receptors with Diverse Intracellular Signalling Modules) bacterial transmembrane proteins. It is possible that this domain adopts a jelly roll fold and acts as a receptor for carbohydrates and their derivatives. Has PF07695:7TM diverse intracellular signalling domain;This entry represents the transmemb [...]


ensembl_gene_id: azo0691
symbol: azo0691
gene_biotype: protein_coding
description:
  Conserved hypothetical metallopeptidase. Homology to bpp2257 of B. parapertussis of 63% (trembl|Q7W887). Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases. Pfam: putaive neutral zinc metallopeptidase no signal peptide 1 TMH; Specificity unclear.


ensembl_gene_id: azo0692
symbol: gloA1
gene_biotype: protein_coding
description:
  Glyoxalase I (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway in the following reaction: glutathione + methylglyoxal = (R)-S-lactoylglutathione,; Function unclear.


ensembl_gene_id: azo0693
symbol: virG
gene_biotype: protein_coding
description:
  Probable DNA-binding response regulator,Response_reg. IPR001867; Trans_reg_C. Pfam: PF00072; response_reg. PF00486; trans_reg_C. SMART: SM00448; REC; Specificity unclear.


ensembl_gene_id: azo0696
symbol: icmF
gene_biotype: protein_coding
description:
  Probable methylmalonyl-coa mutase protein; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.


ensembl_gene_id: azo0697
symbol: azo0697
gene_biotype: protein_coding
description:
  Hypothetical secreted protein. no homology to the data bank. no domains predicted. signal peptide. no TMHs.


ensembl_gene_id: azo0698
symbol: fumC
gene_biotype: protein_coding
description:
  Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.


ensembl_gene_id: azo0699
symbol: azo0699
gene_biotype: protein_coding
description:
  Hypothetical secreted protein. No significant homology to the data bank. no domains pedicted. signal peptide. TMH in signal peptide.


ensembl_gene_id: azo0700
symbol: azo0700
gene_biotype: protein_coding
description:
  Hypothetical protein, 52% identity to TrEMBL;Q8XYG9. Has PF03781, Domain of unknown function (DUF323);IPR005532; This presumed domain is found in bacterial proteins. In some cases these proteins also contain a protein kinase domain. The function of this domain is unknown. The domain has also been found in a eukaryotic protein, required for post-translational sulphatase modification; Function unclear.


ensembl_gene_id: azo0701
symbol: nagZ1
gene_biotype: protein_coding
description:
  Putative beta-hexosaminidase; (N-acetyl-beta-glucosaminidase)(Beta-N- acetylhexosaminidase). Cleaves GlcNAc linked beta-1,4 to MurNAc tripeptides (By similarity). Hydrolyzes rapidly p-nitrophenyl-N-acetyl-beta-D-glucosaminide (PNP-beta-GlcNAc) and 4-methylumbelliferyl-beta-GlcNAc, and slightly active on p-nitrophenyl-beta-GalNAc. May play a role in signal transduction between host and organism. 34% Glyco_hydro_3N. Pfam:PF00933; Glyco_hydro_3; 1. TMhelix:2; High confidence in function and specificity.


ensembl_gene_id: azo0702
symbol: creD
gene_biotype: protein_coding
description:
  Inner membrane protein CreD; CreD confers tolerance to colicin E2. Similar to SWISSPROT:P08369 (35% identity). TMHMM reporting six transmembrane helices; High confidence in function and specificity.


ensembl_gene_id: azo0703
symbol: creC
gene_biotype: protein_coding
description:
  Catabolite repression sensor kinase for PhoB; Sensor protein creC,; High confidence in function and specificity.


ensembl_gene_id: azo0704
symbol: creB
gene_biotype: protein_coding
description:
  Transcriptional regulatory protein creB,Response_reg. IPR001867; Trans_reg_C. Pfam:PF00072; response_reg. PF00486; trans_reg_C. SMART:SM00448; REC. Transcriptional regulatory protein creB. MEMBER OF THE TWO-COMPONENT REGULATORY SYSTEM CREC/CREB INVOLVED IN CATABOLIC REGULATION; High confidence in function and specificity.


ensembl_gene_id: azo0706
symbol: mtgA
gene_biotype: protein_coding
description:
  Probable monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.


ensembl_gene_id: azo0707
symbol: aroE
gene_biotype: protein_coding
description:
  AroE protein; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).


ensembl_gene_id: azo0708
symbol: azo0708
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to ne1626 of N. europaea of 46% (trembl|Q82U75) no domains predicted signal peptide TMH in signal peptide; Conserved hypothetical protein.


ensembl_gene_id: azo0710
symbol: azo0710
gene_biotype: protein_coding
description:
  Putative methyltransferase; Similar to TREMBL:Q8KNG7 (29% identity); TREMBL:Q8UEX8 (27% identity). Pfam (PF01209): ubiE/COQ5 methyltransferase family; Function unclear.


ensembl_gene_id: azo0711
symbol: azo0711
gene_biotype: protein_coding
description:
  Conserrved hypothetical protein. Homology to rsc2781 of R. solanacearum of 51% (trembl|Q8XVP9) Pfam: UPF0227 Despite being classed as uncharacterised proteins,the members of this family are almost certainly enzymes that are distantly related to the Abhydrolase_1. no signal peptide no TMHs.


ensembl_gene_id: azo0712
symbol: uppP
gene_biotype: protein_coding
description:
  Undecaprenol kinase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.


ensembl_gene_id: azo0713
symbol: azo0713
gene_biotype: protein_coding
description:
  Hypothetical protein PA1578.1. TREMBL:Q7W9P0:69% identity, 78% similarity TREMBL: Q8PDJ2: 69% identity, 74% similarity (predicted proteinase inhibitor)) Probable Fe-S cluster bearing oxidoreductase function. InterPro:IPR005358; UPF0153. Pfam:PF03692; UPF0153; High confidence in function and specificity.


ensembl_gene_id: azo0714
symbol: azo0714
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to RPA1001 of R.palustris of 37% (tremble:Q6NB29). No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo0715
symbol: azo0715
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to DP0001 of Desulfotalea psychrophila of 43% (gnl|keqq|dps:DP0001(KEGG)). No domains predicted. No signal peptide. No TMHs.


ensembl_gene_id: azo0716
symbol: hrpA
gene_biotype: protein_coding
description:
  ATP-dependent helicase hrpA. Not yet known. InterPro: DEAD/DEAH box helicase; High confidence in function and specificity.


ensembl_gene_id: azo0717
symbol: azo0717
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to ebA3912 of Azoarcus sp. EbN1 of 45% (gi|56477657|ref|YP_159246.1|(NBCI ENTREZ)). No domains predicted. No TMHs. Signal peptide present; Conserved hypothetical protein.


ensembl_gene_id: azo0719
symbol: priB
gene_biotype: protein_coding
description:
  Putative primosomal replication proteinN; Binds single-stranded DNA at the primosome assembly site (PAS); Belongs to the PriB family.


ensembl_gene_id: azo0720
symbol: rpsR
gene_biotype: protein_coding
description:
  30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.


ensembl_gene_id: azo0722
symbol: dnaB
gene_biotype: protein_coding
description:
  DnaB protein; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.


ensembl_gene_id: azo0723
symbol: azo0723
gene_biotype: protein_coding
description:
  Putative monoxygenase. Pfam: Monoxygenase InterPro: Aromatic-ring hydroxylase (flavoprotein monoxygenase); High confidence in function and specificity.


ensembl_gene_id: azo0724
symbol: dsbC
gene_biotype: protein_coding
description:
  Putative protein disulfide-isomerase; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.


ensembl_gene_id: azo0725
symbol: mltA
gene_biotype: protein_coding
description:
  Putative membrane-bound transglycolase; Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) (Murein hydrolase A) (Mlt38). MUREIN-DEGRADING ENZYME. MAY PLAY A ROLE IN RECYCLING OF MUROPEPTIDES DURING CELL ELONGATION AND/OR CELL DIVISION. OPTIMAL ACTIVITY IS BETWEEN PH 4.0 AND 4.5; LOSES ITS ACTIVITY RAPIDLY AT TEMPERATURES ABOVE 30 DEGREES CELSIUS. DEGRADES MUREIN GLYCAN STRANDS AND INSOLUBLE HIGH-MOLECULAR WEIGHT MUREIN SACCULI. ssl1: transcription factor ssl1; High confidence in function and specificity.


ensembl_gene_id: azo0727
symbol: azo0727
gene_biotype: protein_coding
description:
  Conserved hypothetical ATPase family protein. Homology to bb4427 of B. bronchiseptica of 65% (trembl|Q7WF53). Pfam: ATPase family associated with various cellular activities This large family has the key feature that they share a conserved region of about 220 amino acids that contains an ATP-binding site. no signal peptide no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0728
symbol: azo0728
gene_biotype: protein_coding
description:
  Bifunctional DGTP-pyrophosphohydrolase/Thiamine-phosphate diphosphorylase; NUDIX hydrolase/thiamine phosphate synthase Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate (THZ-P) and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) (By similarity). InterPro: NUDIX hydrolase TIGRFAM: mutt: mutator mutT protein; High confidence in function and specificity.


ensembl_gene_id: azo0729
symbol: yacG
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase.


ensembl_gene_id: azo0730
symbol: yacF
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity.


ensembl_gene_id: azo0731
symbol: coaE
gene_biotype: protein_coding
description:
  CoaE protein; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.


ensembl_gene_id: azo0732
symbol: azo0732
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to rs03277 of R. solanacearum of 30% (TrEMBL:Q8Y2M5). No domains predicted. signal peptide. no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0733
symbol: baf
gene_biotype: protein_coding
description:
  Probable Bvg accessory factor; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis; Belongs to the type III pantothenate kinase family.


ensembl_gene_id: azo0734
symbol: birA
gene_biotype: protein_coding
description:
  biotin--[acetyl-CoA-carboxylase] ligase; BirA bifunctional protein [Includes: Biotin operon repressor; Biotin--[acetyl-CoA-carboxylase] synthetase (EC 6.3.4.15) (Biotin--protein ligase)]. birA acts both as a biotin-operon repressor and as the enzyme that synthesizes the corepressor, acetyl-coa:carbon- dioxide ligase. this protein also activates biotin to form biotinyl-5'-adenylate and transfers the biotin moiety to biotin-accepting proteins. InterPro: Biotin--acetyl-CoA-carboxylase ligase birA_ligase: biotin--acetyl-CoA-carboxyla; Specificity unclear.


ensembl_gene_id: azo0735
symbol: ntrC
gene_biotype: protein_coding
description:
  Nitrogen regulation protein NR(I); Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.


ensembl_gene_id: azo0737
symbol: azo0737
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to cv3590 of C. violaceum of 39% (trembl|Q7NS37(SRS)) no domains predicted signal peptide no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0738
symbol: glnA
gene_biotype: protein_coding
description:
  Glutamine synthetase I (GS) plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. Similar to pir|G83005 (70%) and to pir|AJECQ (66%). Pfam (PF00120): Glutamine synthetase, catalytic domain Pfam (PF03951): Glutamine synthetase, beta-Grasp domain; High confidence in function and specificity.


ensembl_gene_id: azo0739
symbol: czcD1
gene_biotype: protein_coding
description:
  Putative cobalt-zinc-cadmium resistance protein; CzcD: Members of this family (TC 2.A.4) are integral membrane proteins that are found to increase tolerance to divalent metal ions such as cadmium, zinc,and cobalt. These proteins are thought to be efflux pumps that remove these ions from cells. (Slc30a subfamily). Similar to the cobalt-zinc-cadmium resistance protein CzcD (cation efflux system protein) from Alcaligenes eutrophus (Ralstonia eutropha). SWISSPROT:CZCD_ALCEU.P13512. InterPro:IPR002524; Cation_efflux.InterPro: Cation efflux family. Pfam:PF01545; Cation_efflux; 1. TIGRFAMs:TI [...]


ensembl_gene_id: azo0740
symbol: azo0740
gene_biotype: protein_coding
description:
  Similar to Rhodanese domain protein, a sulphurtransferase involved in cyanide detoxification. InterPro: Rhodanese/cdc25 fold; Specificity unclear.


ensembl_gene_id: azo0741
symbol: nadA
gene_biotype: protein_coding
description:
  Quinolinate synthetase; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.


ensembl_gene_id: azo0742
symbol: azo0742
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to rs04427 of R. solanacearum of 55% (trembl|Q8Y267). Pfam: Endonuclease/Exonuclease/phosphatase family (PF03372). Interpro: Endonuclease/Exonuclease/phosphatase family (IPR005135). no signal peptide. no TMHs.


ensembl_gene_id: azo0743
symbol: cls1
gene_biotype: protein_coding
description:
  Putative cardiolipin synthetase; Catalyzes the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol.


ensembl_gene_id: azo0744
symbol: azo0744
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Protein yccU. TREMBL:Q982W3: 50% identity, 70% similarity. This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases. InterPro:IPR003781; CoA_binding. Pfam: PF02629; CoA_binding FRU: PTS enzyme-IIB fructose permease No signal peptide. No transmembrane helices present; Function unclear.


ensembl_gene_id: azo0745
symbol: gluQ
gene_biotype: protein_coding
description:
  Glutamate-tRNA ligase; Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2- cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon; Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily.


ensembl_gene_id: azo0746
symbol: azo0746
gene_biotype: protein_coding
description:
  Hypothetical membrane protein. Homology to la0834 of L. interrogans of 25% (trembl|Q8F7U9). InterPro: Dolichyl-phosphate-mannose-protein mannosyltransferase (IPR003342). Dolichyl-phosphate-mannose-protein mannosyltransferase proteins belong to the glycosyltransferase family 39 and are responsible for O-linked glycosylation of proteins. They catalyse the reaction: Dolichyl phosphate D-mannose + protein -> dolichyl phosphate + O-D-mannosyl-protein. Pfam: Dolichyl-phosphate-mannose-protein mannosyltransferase. signal peptide. 10 TMHs.


ensembl_gene_id: azo0747
symbol: azo0747
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein; 40% GH_BNR. Pfam:PF02012; BNR; 2. TMHelix:1. Signal peptide: present; Function unclear.


ensembl_gene_id: azo0748
symbol: azo0748
gene_biotype: protein_coding
description:
  Probable cellobiose phosphorylase, 31% identity to TrEMBL;Q7NYW4. Has PF04794, YdjC-like protein;IPR006879; Family of YdjC-like proteins. This region is possibly involved in the the cleavage of cellobiose-phosphate; Function unclear.


ensembl_gene_id: azo0749
symbol: azo0749
gene_biotype: protein_coding
description:
  Conserved hypothetical glycosyl transferase. Homology to cc2889 of. C. crescentus (trembl|Q9A4E5). Pfam: Glycosyl transferase family 2(PF00535). Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids. Interpro: Glycosyl transferase family 2 (IPR001173). no signal peptide. 2 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0750
symbol: azo0750
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. TREMBL:Q89QQ8: 34% identity This is a subfamily of bacterial binding-protein-dependent transport systems family, and includes transport system permease proteins involved in the transport across the membrane of several compounds. This entry contains the inner components of this multicomponent transport system InterPro: IPR000522; FecD. Pfam: PF01032; FecCD ncs1: NCS1 nucleoside transporter fam Nonsecretory protein with signal peptide probability 0.203 (Signal P predicted). TMHMM predicted 9 transmembrane helices; Function unclear.


ensembl_gene_id: azo0751
symbol: azo0751
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to PA4820 of P. aeruginosa of 38% (trembl|Q9HUZ0(SRS)) Has PF04138, GtrA-like protein;IPR007267;Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylatio [...]


ensembl_gene_id: azo0752
symbol: ychF
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.


ensembl_gene_id: azo0753
symbol: pth
gene_biotype: protein_coding
description:
  Pth protein; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.


ensembl_gene_id: azo0754
symbol: rplY
gene_biotype: protein_coding
description:
  50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.


ensembl_gene_id: azo0755
symbol: prsA
gene_biotype: protein_coding
description:
  Ribose-phosphate diphosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.


ensembl_gene_id: azo0756
symbol: ispE
gene_biotype: protein_coding
description:
  Probable 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.


ensembl_gene_id: azo0757
symbol: lolB
gene_biotype: protein_coding
description:
  Conserved hypothetical outer membrane lipoprotein; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.


ensembl_gene_id: azo0758
symbol: azo0758
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to cv4061 of C. violaceum of 37% (trembl|Q7NQS6). InterPro: TPR repeat (IPR001440) signal peptide no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0759
symbol: mutM
gene_biotype: protein_coding
description:
  MutM protein; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.


ensembl_gene_id: azo0760
symbol: azo0760
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; TREMBL:Q8Y2D6:42% identity, 59% similarity Hypothetical protein in xynA 3region (ORF6) (Fragment). Pfam:dynamin_2 :Dynamin central region; FH2:Formin Homology 2 Domain surE: stationary-phase survival prote No transmembrane helices(TMHMM predicted); Function unclear.


ensembl_gene_id: azo0761
symbol: fdx1
gene_biotype: protein_coding
description:
  Probable ferredoxin. Homology to fdx of C. vinosum of 67% (sprot|FER_CHRVI). Ferredons are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. Pfam: 4Fe-4S binding domain no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo0762
symbol: coaD
gene_biotype: protein_coding
description:
  Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.


ensembl_gene_id: azo0764
symbol: azo0764
gene_biotype: protein_coding
description:
  Probable Zn dependent peptidase; Hypothetical zinc protease-like protein y4wB. TREMBL:Q8Y2E8: 43% identity; 57% similarity. InterPro: Insulinase family (Peptidase family M16) InterPro:IPR001431; Peptidase_M16. IPR007863: Peptidase_M16_C. Pfam:PF00675; Peptidase_M16 (Insulinase); homoserine_dh; aldehyde dehydrogenase; PF05193:Peptidase_M16_C; precor6x_red: precorrin-6x reductase TIGRFAM:folate/biopterin transporter SignalP predicted signal peptide and TMHMM predicted transmembrane helix; Specificity unclear.


ensembl_gene_id: azo0765
symbol: azo0765
gene_biotype: protein_coding
description:
  Probable Zn dependent peptidase; TREMBL:Q8Y2E9: 55% identity, 68% similarity. Hypothetical zinc protease y4wA. InterPro:IPR001431; Peptidase_M16. IPR007863: Peptidase_M16_C. cofactor:binds 1 zinc ion per subunit (by similarity). belongs to peptidase family m16. similarity:to y4wb. Pfam:PF00675; Peptidase_M16; 1. PF05193:Peptidase_M16_C TIGRFAM: uxuA SignalP predicted signal peptide and TMHMM predicted transmembrane helices menD: 2-succinyl-6-hydroxy-24-cyclohex; Specificity unclear.


ensembl_gene_id: azo0766
symbol: FtsY
gene_biotype: protein_coding
description:
  Probable signal recognition particle-docing protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.


ensembl_gene_id: azo0768
symbol: FtsX
gene_biotype: protein_coding
description:
  Putative cell division protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.


ensembl_gene_id: azo0769
symbol: ahpC
gene_biotype: protein_coding
description:
  Alkyl hydroperoxide reductase subunit C; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.


ensembl_gene_id: azo0770
symbol: ahpF
gene_biotype: protein_coding
description:
  Alkyl hydroperoxide reductase subunit F. Homology to aphF of X. campestris of 71% (sprot|AHPF_XANCH) Serves to protect the cell against DNA damage by alkyl hydroperoxides. It can use either NADH or NADPH as electron donor for direct reduction of redox dyes or of alkyl hydroperoxides when combined with the AHPC protein. Pfam: Pyridine nucleotide-disulphide oxidareductase no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo0773
symbol: azo0773
gene_biotype: protein_coding
description:
  Hypothetical protein, 32% identity to TrEMBL;Q8NZP4 No domains, repeats, motifs or features present.


ensembl_gene_id: azo0775
symbol: azo0775
gene_biotype: protein_coding
description:
  Putative DNA-invertase from lambdoid prophage Rac. InterPro: Site-specific recombinase Pfam: Resolvase; Family membership.


ensembl_gene_id: azo0778
symbol: miaB
gene_biotype: protein_coding
description:
  Conserved Hypothetical protein; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.


ensembl_gene_id: azo0780
symbol: ybeY
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.


ensembl_gene_id: azo0781
symbol: corC
gene_biotype: protein_coding
description:
  Magnesium and cobalt efflux protein corC. Plays a role in the transport of magnesium and cobalt ions. Also mediates transport of cobalt and nickel. 43% CBS_domain.IPR005170; CorC_transpt-asc. Pfam:PF00571; CBS; 2.PF03471; CorC_HlyC; 1. Belongs to the UPF0053 family.Contains 2 cbs domains; High confidence in function and specificity.


ensembl_gene_id: azo0782
symbol: lnt
gene_biotype: protein_coding
description:
  Putative apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.


ensembl_gene_id: azo0783
symbol: azo0783
gene_biotype: protein_coding
description:
  Membrane fusion protein; HlyD family secretion protein. The secretion of a number of proteins/molecules require the help of members belonging to the ABC transporter family and a membrane fusion protein belonging to the HlyD family, TREMBL:Q7NHP0 (27% identity); SignalP predicting signal peptide. TC (8.A.1): The Membrane Fusion Protein (MFP) Family; Family membership.


ensembl_gene_id: azo0784
symbol: azo0784
gene_biotype: protein_coding
description:
  RND efflux transporter, permease protein; AcrB/AcrD/AcrF family protein. Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer, TREMBL:Q9A3K6 (38% identity); TREMBL:Q89XF8 (40% identity). InterPro (IPR001036): Acriflavin resistance protein. Pfam (PF00873): AcrB/AcrD/AcrF family. TIGRFAM (TIGR00914): Heavy metal efflux pump, CzcA family. TIGRFAM (TIGR00915): Hydrophobe/Amphiphile Efflux-1 (HAE1) Family protein. T [...]


ensembl_gene_id: azo0785
symbol: glyQ
gene_biotype: protein_coding
description:
  Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) (Glycine--tRNA ligase alpha chain) (GlyRS); High confidence in function and specificity.


ensembl_gene_id: azo0786
symbol: glyS
gene_biotype: protein_coding
description:
  Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) (Glycine--tRNA ligase beta chain) (GlyRS); High confidence in function and specificity.


ensembl_gene_id: azo0787
symbol: azo0787
gene_biotype: protein_coding
description:
  Putative haloacid dehalogenase-like hydrolase, 60% Identity to TrEMBL;Q7W4K4,Q7WG29,Q7W0Q4. Has PF00702,haloacid dehalogenase-like hydrolase; IPR005834 Dehal_like_hydro; This family are structurally different from the alpha/ beta hydrolase family (Abhydrolase_1). This family includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure of the family consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of P24069. The rest of the fold is composed of the core alpha/beta [...]


ensembl_gene_id: azo0788
symbol: azo0788
gene_biotype: protein_coding
description:
  Probable acyltransferase; Acyl-[acyl-carrier protein] can also acts as acyl donor.The animal enzyme is specific for the transfer of unsaturated fatty acyl groups. Catalytic Activity:-Acyl-CoA + 1-acyl-sn-glycerol 3-phosphate = CoA + 1,2-diacyl-sn-glycerol 3-phosphate. Entry name TREMBL:Q82VB2 Prim. accession # Q82VB2 InterPro:-IPR002123; Acyltransferase. Pfam:- PF01553; Acyltransferase; 1. Identity:- 56% Prediction: Signal peptide Signal peptide probability: 0.907 Number of predicted TMHs: 1; Family membership.


ensembl_gene_id: azo0789
symbol: azo0789
gene_biotype: protein_coding
description:
  Probable phasin. Homology to p8 of Sphingomonas sp. A1 of 69% (gi|51773776|dbj|BAD38885.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide; Family membership.


ensembl_gene_id: azo0790
symbol: paaF1
gene_biotype: protein_coding
description:
  Probable enoyl-CoA hydratase; COULD POSSIBLY OXIDIZES FATTY ACIDS USING SPECIFIC COMPONENTS (BY SIMILARITY). CATALYTIC ACTIVITY: (3S)-3-hydroxyacyl-CoA = trans-2(or 3)-enoyl-CoA + H2O. Entry name :- SWISSPROT:PAAF_ECOLI Prim. accession # P76082 InterPro :- IPR001753; EnCoA_hydrtse. Pfam :- PF00378; ECH; 1. Identities = 109/250 (43%) Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0; Family membership; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: azo0791
symbol: lptA
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane.


ensembl_gene_id: azo0792
symbol: azo0792
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to ebA1318 of Azoarcus sp. EbN1 of 47% (gnl|keqq|eba:ebA1318(KEGG)). Has PF06835, Protein of unknown function (DUF1239);IPR010664;This family consists of several hypothetical bacterial proteins of around 190 residues in length. The function of this family is unknown. No TMHs. Signal peptide; Conserved hypothetical protein.


ensembl_gene_id: azo0793
symbol: azo0793
gene_biotype: protein_coding
description:
  Probable phosphatase (HAD superfamily); Catalyzes the hydrolysis of KDO 8-P to KDO and inorganic phosphate TREMBL:Q9JSU3: 43% identity, 59% similarity InterPro: IPR006549; HAD-SF-IIIA. IPR005834; Hydrolase. IPR008230; Sugar_Ptase. IPR010023; YrbI_phosphatas. Pfam: PF00702; Hydrolase TIGR00099: conserved hypothetical prote Absence of transmembrane helices; Specificity unclear.


ensembl_gene_id: azo0794
symbol: azo0794
gene_biotype: protein_coding
description:
  Arabinose 5-phosphate isomerase (EC 5.3.1.13). Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate (By similarity). InterPro: KpsF/GutQ family protein kpsF: KpsF/GutQ family protein; High confidence in function and specificity; Belongs to the SIS family. GutQ/KpsF subfamily.


ensembl_gene_id: azo0795
symbol: azo0795
gene_biotype: protein_coding
description:
  Probable glutathione-regulated potassium-efflux system protein (K(+)/H(+) antiporter). Transport system that facilitate potassium-efflux possibly by potassium-proton antiport. 50% Na_H_porter.IPR006037; TrkAC.IPR003148; TrkA_N. Pfam: PF00999; Na_H_Exchanger; 1.PF02080; TrkA_C; 1.PF02254; TrkA_N; 1. TMhelix: 11; High confidence in function and specificity; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.


ensembl_gene_id: azo0796
symbol: azo0796
gene_biotype: protein_coding
description:
  Conserved hypothetical membrabe protein. Homology to Mflag03002444 of Methylobacillus flagellatus of 48% (gi|46120631|ref|ZP_00201765.1|(NBCI ENTREZ)). no domains predicted. No signal peptide. 1 TMHs.


ensembl_gene_id: azo0797
symbol: azo0797
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to Daro03002886 of Dechloromonas aromatica of 31% (gi|53729825|ref|ZP_00150246.2|(NBCI ENTREZ)). No domains predicted. No TMHs. Signal peptide.


ensembl_gene_id: azo0799
symbol: azo0799
gene_biotype: protein_coding
description:
  Hypothetical secreted protein. no homology with the data bank. no domains predicted. signal peptide. no TMHS.


ensembl_gene_id: azo0801
symbol: azo0801
gene_biotype: protein_coding
description:
  Hypothetical membrane protein. No homology to the data bank. No domains predicted. Signal peptide present. 1 TMH present.


ensembl_gene_id: azo0804
symbol: azo0804
gene_biotype: protein_coding
description:
  Hypothetical protein. No homology to a protein of similar size. No domains predicted. No signal peptide. No TMHs.


ensembl_gene_id: azo0805
symbol: gspD1
gene_biotype: protein_coding
description:
  General secretion pathway protein D; Type II secretory pathway component D, weak similarity to SWISSPROT:HOFQ_ECOLI (18%). A number of proteins are involved in the general secretion pathway (GSP); one of these is known as protein D (GSPD protein). Protein D is involved in the type II general secretion pathway within Gram-negative bacteria, a signal sequence-dependent process responsible for protein export. InterPro (PF00263): General (type II) secretion pathway (GSP) D protein; Specificity unclear; Belongs to the bacterial secretin family.


ensembl_gene_id: azo0806
symbol: azo0806
gene_biotype: protein_coding
description:
  Conserved hypothetical ABC transporter ATP-binding protein. Homology to rs01335 of R. solanacearum of 67% (trembl|Q8XV69). ATP-binding cassette (ABC) transporters are multidomain membrane proteins, responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. They are minimally composed of four domains, with two transmembrane domains (TMDs) responsible for allocrite binding and transport and two nucleotide-binding domains (NBDs) responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs. Both NBDs are capable of  [...]


ensembl_gene_id: azo0807
symbol: azo0807
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein Similar to TREMBL:Q7P0W7 (65% identity); TREMBL:Q82SF6 (65% identity); TREMBL:Q7VSZ9 (57% identity). InterPro (IPR003453): Domain of unknown function DUF140. Pfam (PF02405): Domain of unknown function DUF140. TIGRFAM (TIGR00056): Conserved hypothetical protein. TMHMM reporting five transmembrane helices.


ensembl_gene_id: azo0808
symbol: azo0808
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Similar to TREMBL:Q8XV71 (59% identity); TREMBL:Q82SF7 (55% identity); TREMBL:Q7VSZ8 (55% identity). Pfam (PF02470): mce related protein. This family of proteins contains the mce (mycobacterial cell entry) proteins from Mycobacterium tuberculosis. The archetype (Rv0169), was isolated as being necessary for colonisation of, and survival within,the macrophage. This family contains proteins of unknown function from other bacteria. SignalP reoprting signal peptide. TMH in signal peptide; Family membership.


ensembl_gene_id: azo0809
symbol: vacJ
gene_biotype: protein_coding
description:
  Putative surface lipoprotein. Homology to vacJ of S. flexneri of 26% (sprot|VACJ_SHIFL) Required for intercellular spreading. Pfam: VacJ like lipoprotein signal peptide no TMHs; Family membership.


ensembl_gene_id: azo0810
symbol: azo0810
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Similar to TREMBL:Q82SF8 (54% identity); TREMBL:Q8XV73 (42% identity); TREMBL:Q7VSZ6 (40% identity). SignalP reporting signal peptide. no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0811
symbol: azo0811
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to rsc2957 of R. solanacearum of 42% (trembl|Q8XV74). Pfam: STAS domain The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. no signal peptide no TMHs.


ensembl_gene_id: azo0812
symbol: azo0812
gene_biotype: protein_coding
description:
  ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs, TREMBL:Q7P0X8 (62% identity); TREMBL:Q82SG0 (58% identity). InterPro (IPR003593): AAA ATPase. InterPro (IPR001687): ATP/GTP-binding site motif A (P-loop). InterPro (IPR003439): ABC transporter. Pfam (PF00005): ABC transpor [...]


ensembl_gene_id: azo0813
symbol: azo0813
gene_biotype: protein_coding
description:
  ABC-2 type transporter permease protein; Similar to TREMBL:Q8XV76 (69% identity); TREMBL:Q7P0X7 (66% identity); TREMBL:Q82SG1 (64% identity). InterPro (IPR000412): ABC transporter, family 2. Pfam (PF01061): ABC-2 type transporter. TMHMM reporting seven transmembrane helices. TC (3.A.1): The ATP-binding Cassette (ABC) Superfamily; Specificity unclear.


ensembl_gene_id: azo0814
symbol: azo0814
gene_biotype: protein_coding
description:
  Conserved hypothetical BolA-like protein. Homology to ne2377 of N. europaea of 47% (trembl|Q82SG2). InterPro: BolA-like protein This family consist of the morphoprotein BolA from E. coli and its various homologues. In E. coli over expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase. BolA is also induced by stress during early stages of growth and may have a general role  [...]


ensembl_gene_id: azo0815
symbol: murA
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.


ensembl_gene_id: azo0816
symbol: rnk
gene_biotype: protein_coding
description:
  Regulator of nucleoside diphosphate kinase. RNK AND SSPA CAN FUNCTIONALLY REPLACE P.AERUGINOSA ALGINATE REGULATORY GENE ALGR2. 49% 1; High confidence in function and specificity.


ensembl_gene_id: azo0817
symbol: hisG
gene_biotype: protein_coding
description:
  HisG protein; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Short subfamily.


ensembl_gene_id: azo0818
symbol: hisD
gene_biotype: protein_coding
description:
  HisD protein; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.


ensembl_gene_id: azo0819
symbol: aspC
gene_biotype: protein_coding
description:
  Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes,such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped into subfamilies; these sequences are defined by the aminotransferases class-I pyridoxal-phosphate attachment site signature, which contains the lysine residue involved in pyridoxal-phosphate binding. Similar to pir|D83057 (55%) and to trembl|Q8P544 (55%). Pfam (PF00155): Aminotransferases class-I pyridoxal-phosphate-binding site H [...]


ensembl_gene_id: azo0820
symbol: pckG
gene_biotype: protein_coding
description:
  Probable phosphoenolpyruvate carboxykinase; Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle; Belongs to the phosphoenolpyruvate carboxykinase [GTP] family.


ensembl_gene_id: azo0821
symbol: maeB1
gene_biotype: protein_coding
description:
  Probable malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) (EC 1.1.1.40) (NADP-ME). Homology to dme of S. meliloti of 60% (sprot|MAO1_RHIME). Required for symbiotic nitrogen fixation. Plays a key role in the conversion of malate to acetyl-CoA for efficient tricarboxylic acid cycle function in nitrogen-fixating bacteria. Tigrfam: pta: phosphotransacetylase Pfam: Malic enzyme; Phosphate acetyl/butaryltransferase no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo0822
symbol: azo0822
gene_biotype: protein_coding
description:
  Probable Hypothetical UPF0028 family protein YML059C. TREMBL:Q82SM1: 50% identity, 68% similariry InterPro:IPR002641; Patatin. Pfam:PF01734; Patatin bioF: 8-amino-7-oxononanoate synthase Signal peptide present (SinalP predicted) TMHMM predicted TMH's; Function unclear.


ensembl_gene_id: azo0823
symbol: pbpG
gene_biotype: protein_coding
description:
  Penicillin-binding protein 5 precursor (PBP-5) (D-alanyl-D-alanine- endopeptidase) (DD-endopeptidase); High confidence in function and specificity; Belongs to the peptidase S11 family.


ensembl_gene_id: azo0824
symbol: allR
gene_biotype: protein_coding
description:
  Probable negative regulator of allantoin and glyoxylate utilization operons,; High confidence in function and specificity.


ensembl_gene_id: azo0825
symbol: azo0825
gene_biotype: protein_coding
description:
  Hypothetical protein. No homology to the data bank. No domains predicted. No signal peptide. No TMHs.


ensembl_gene_id: azo0826
symbol: azo0826
gene_biotype: protein_coding
description:
  Glycerate dehydrogenase (EC 1.1.1.29) (NADH-dependent hydroxypyruvate reductase) (HPR) (GDH) (Hydroxypyruvate dehydrogenase) (Glyoxylate reductase) (HPR-A). PLAYS A CENTRAL ROLE IN ASSIMILATION OF CARBON. IT CONVERTS HYDROXYPYRUVATE TO GLYCERATE AS A KEY STEP IN THE SERINE CYCLE AND MAY ALSO PLAY AN IMPORTANT ROLE IN C2 REACTIONS BY INTERCONVERTING GLYOXYLATE AND GLYCOLATE; Specificity unclear.


ensembl_gene_id: azo0827
symbol: azo0827
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to ORF428 of Roseateles depolymerans of 64% (tremble:BAB1967) Has PF07399:(IPR009978)Protein of unknown function (DUF1504); This family consists of several hypothetical bacterial proteins of around 440 residues in length. The function of this family is unknown; Conserved hypothetical protein.


ensembl_gene_id: azo0828
symbol: azo0828
gene_biotype: protein_coding
description:
  Putative RNA pseudouridylate synthase. Homology with hits in the database only for the first half of protein. Has PF00849, RNA pseudouridylate synthase; IPR006145, PseudoU_synth; Members of this family are involved in modifying bases in RNA molecules. They carry out the conversion of uracil bases to pseudouridine. This family includes RluD P33643, a pseudouridylate synthase that converts specific uracils to pseudouridine in 23S rRNA. RluA from E. coli converts bases in both rRNA and tRNA. Has SMART;SM00363, S4 RNA-binding domain;IPR002942;The S4 domain is a small domain consisting of 6 [...]


ensembl_gene_id: azo0829
symbol: nuoB1
gene_biotype: protein_coding
description:
  Conserved hypothetical NADH-quinone oxidoreductase chain B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient (By similarity).


ensembl_gene_id: azo0831
symbol: azo0831
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to Daro03000467 of Dechloromonas aromatica of 50% (gi|41725519|ref|ZP_00152277.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo0832
symbol: azo0832
gene_biotype: protein_coding
description:
  ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs, TREMBL:Q8DJ46 (29% identity); TREMBL:Q8YZK5 (29% identity). InterPro (IPR003838): Protein of unknown function DUF214. Pfam (DUF214): Predicted permease. TMHMM reporting four transmembrane helices. TC (3.A.1.122.): The Macr [...]


ensembl_gene_id: azo0833
symbol: azo0833
gene_biotype: protein_coding
description:
  ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs, TREMBL:Q8YZK5 (28% identity); TREMBL:Q8DJ46 (29% identity). Pfam (DUF214): Predicted permease. TMHMM reporting five transmembrane helices. TC (3.A.1.122.): The Macrolide Exporter (MacB) Family; Specificity unclear.


ensembl_gene_id: azo0834
symbol: azo0834
gene_biotype: protein_coding
description:
  ABC transporter ATP-binding protein; Putative efflux transporter for macrolide antibiotics (MacB-family). Acts in conjunction with MacA. Similar to TREMBL:Q82W68 (59% identity); TREMBL:Q8RAL4 (46% identity); SWISSPROT:P75831 (41% identity). InterPro (IPR003593): AAA ATPase. InterPro (IPR003439): ABC transporter. InterPro (IPR001687): ATP/GTP-binding site motif A (P-loop). Pfam (PF00005): ABC transporter. TC (3.A.1.122): The Macrolide Exporter (MacB) Family; Family membership.


ensembl_gene_id: azo0835
symbol: azo0835
gene_biotype: protein_coding
description:
  Membrane fusion protein; The secretion of a number of proteins/molecules require the help of members belonging to the ABC transporter family and a membrane fusion protein belonging to the HlyD family,; Family membership.


ensembl_gene_id: azo0836
symbol: glnS
gene_biotype: protein_coding
description:
  Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA ligase) (GlnRS). glnS: glutaminyl-tRNA synthetase; High confidence in function and specificity.


ensembl_gene_id: azo0837
symbol: crcB
gene_biotype: protein_coding
description:
  Conserved hypothetical CrcB family protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.


ensembl_gene_id: azo0838
symbol: azo0838
gene_biotype: protein_coding
description:
  Conserved hypothetical puter membrane protein Homology to cv1891 of c. violaceum of 64% (trembl|Q7NWT8) InterPro: Bacterial outer membrane protein (IPR006664) Pfam: OmpA family signal peptide 2 TMHs; Family membership.


ensembl_gene_id: azo0840
symbol: thiC
gene_biotype: protein_coding
description:
  Thiamine biosynthesis protein; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction.


ensembl_gene_id: azo0841
symbol: thiD1
gene_biotype: protein_coding
description:
  Phosphomethylpyrimidine kinase (EC 2.7.4.7) (HMP-phosphate kinase) (HMP-P kinase). CATALYZES THE PHOSPHORYLATION OF HMP-P TO HMP-PP. TIGRFAM: HMP-P_kinase: phosphomethylpyrimidine kinase; High confidence in function and specificity.


ensembl_gene_id: azo0842
symbol: ecaA
gene_biotype: protein_coding
description:
  Carbonic anhydrase precursor (EC 4.2.1.1) (Carbonate dehydratase).Involved in the reversible hydration of carbon dioxide. 40% Euk_COanhd.IPR000437; Prok_lipoprot_S.IPR006311;Tat. InterPro: belongs to the eukaryotic-type carbonic anhydrase family. Pfam:PF00194; carb_anhydrase; 1. TIGRFAMs:TIGR01409; TAT_signal_seq; 1. Signal peptide present; High confidence in function and specificity.


ensembl_gene_id: azo0843
symbol: azo0843
gene_biotype: protein_coding
description:
  Conserved hypothetical transcriptional regulator. Homology to rsc0989 of r. solanacearum of 47% (CAD14691). Pfam: Bacterial regulatory proteins, gntR family; Aminotransferase class I and II no signal peptide no TMHs bioF: 8-amino-7-oxononanoate synthase; Specificity unclear.


ensembl_gene_id: azo0844
symbol: azo0844
gene_biotype: protein_coding
description:
  Hypothetical secreted protein. No homology to the data base. No domain predicted. No TMHs. Signal peptide.


ensembl_gene_id: azo0845
symbol: azo0845
gene_biotype: protein_coding
description:
  Conserved hypothetical transcriptional regulator. Homology to RSc0698 of alstonia solanacearum of 48% (gnl|keqq|rso:RS01603(KEGG)). InterPro: IPR001647 HTH_TetR. Pfam: PF00440 Bacterial regulatory proteins,tetR family. HTH reporting nucleic acid binding motif. No signal peptide. No TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0846
symbol: azo0846
gene_biotype: protein_coding
description:
  Membrane fusion protein; Similar to TREMBL:Q7NR61 (35% identity); TREMBL:Q8XYV3 (33% identity); TREMBL:Q88MQ4 (32% identity). InterPro (IPR006143): Secretion protein HlyD. SignalP predicting signal peptide. TC (2.A.6.1): The Heavy Metal Efflux (HME) Family; Family membership; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: azo0847
symbol: azo0847
gene_biotype: protein_coding
description:
  RND efflux transporter, permease protein; AcrB/AcrD/AcrF family. Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer, TREMBL:Q9A7D5 (35% identity); TREMBL:Q9HXW4 (55% identity). Pfam (PF00873): AcrB/AcrD/AcrF family. TIGRFAM (TIGR00914): Heavy metal efflux pump, CzcA family. TIGRFAM (TIGR00915): Hydrophobe/Amphiphile Efflux-1 (HAE1) Family protein. TMHMM predicting 12 transmembrane helices. TC (2.A.6.2): The ( [...]


ensembl_gene_id: azo0848
symbol: pcm1
gene_biotype: protein_coding
description:
  Putative protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins (By similarity). InterPro: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (IPR000682), SAM binding motif (IPR000051) Tigrfam: pimt: protein-L-isoaspartate O-methyltransfase Pfam: Protein-L-isoaspartate (D-aspartate) O-methyltransferase no signal peptide no TMHs; High c [...]


ensembl_gene_id: azo0849
symbol: azo0849
gene_biotype: protein_coding
description:
  Conserved hypothetical sulfurtransferase protein; Putative rhodanese-related sulfurtransferase. TIGR:NMB1884. InterPro:IPR001763; Rhodanese-like. InterPro: Rhodanese/cdc25 fold. Pfam:PF00581; Rhodanese; 1; Function unclear.


ensembl_gene_id: azo0850
symbol: tolC
gene_biotype: protein_coding
description:
  Putative outer membrane effluxe protein protein. Homology to tolC from E. coli of 33%. The OEP family (outer membreane effluxe protein) allow export of a variety of substrates in Gram negative bacteria. TolC is believed to be a membre af an ABC transporter system for protein secretion without cleavage of a signal sequence. Pfam: Outer membrane efflux protein Signal peptide no TMHs; Family membership.


ensembl_gene_id: azo0851
symbol: waaA
gene_biotype: protein_coding
description:
  3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.


ensembl_gene_id: azo0852
symbol: wbnF
gene_biotype: protein_coding
description:
  Putative nucleotide sugar epimerase; Probably involved in the biosynthesis of exopolysaccharides. 68% Epimerase_Dh.IPR008089; Nuc_sugar_epim. Pfam:PF01370; Epimerase; 1; High confidence in function and specificity.


ensembl_gene_id: azo0853
symbol: apaH
gene_biotype: protein_coding
description:
  Bis(5'-nucleosyl)-tetraphosphatase (symmetrical); Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.


ensembl_gene_id: azo0854
symbol: plsC
gene_biotype: protein_coding
description:
  Putative 1-acyl-sn-glycerol-3-phosphate acyltransferase; Function:-Converts lysophosphatidic acid (LPA) into phosphatidic acid by incorporating acyl moiety at the 2 position (By similarity). CATALYTIC ACTIVITY: Acyl-CoA + 1-acyl-sn-glycerol 3-phosphate = CoA + 1,2-diacyl-sn-glycerol 3-phosphate. Entry name:- PLSC_NEIGO Primary accession number :- Q59601 InterPro IPR002123; Acyltransferase. IPR004552; AGP_acyltrn. Pfam PF01553; Acyltransferase; 1. Identities = 68/182 (37%) Prediction: Non-secretory protein Signal peptide probability: 0.096 Number of predicted TMHs: 0; Family membership.


ensembl_gene_id: azo0855
symbol: azo0855
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to cv0660 of C. violaceum of 59% (trembl|Q7P0A7) no domains predicted no singal peptide no TMHs.


ensembl_gene_id: azo0856
symbol: azo0856
gene_biotype: protein_coding
description:
  Glycosyltransferase; Similar to amylovoran biosynthesis glycosyl transferase amsK (EC 2.-.-.-). INVOLVED IN THE BIOSYNTHESIS OF AMYLOVORAN WHICH FUNCTIONS AS A VIRULENCE FACTOR. Similar to protein annotated as sulfolipid sulfoquinovosyldiacylglycerol biosynthesis proteins; Family membership.


ensembl_gene_id: azo0858
symbol: slyB
gene_biotype: protein_coding
description:
  Outer membrane lipoprotein SlyB. Homology to slyB of E. coli of 32% (sprot|SLYB_ECOLI) no domains predicted signal peptide no TMHs; Family membership.


ensembl_gene_id: azo0859
symbol: dgkA
gene_biotype: protein_coding
description:
  Probable diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid.


ensembl_gene_id: azo0860
symbol: azo0860
gene_biotype: protein_coding
description:
  Hypothetical protein. No Domains,Features,Signal Pepetide or TMH reported Present. Most top hits suggest the possibillity of Transmembrane protein, but due to non existance of any TMH's domains it cant be considered as a choice; Specificity unclear.


ensembl_gene_id: azo0861
symbol: prmA
gene_biotype: protein_coding
description:
  Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.


ensembl_gene_id: azo0862
symbol: accC1
gene_biotype: protein_coding
description:
  Probable biotin carboxylase (a subunit of acetyl-coa carboxylase); This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: azo0863
symbol: azo0863
gene_biotype: protein_coding
description:
  Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs.


ensembl_gene_id: azo0864
symbol: accB
gene_biotype: protein_coding
description:
  Probable biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: azo0865
symbol: aroQ
gene_biotype: protein_coding
description:
  Probable 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.


ensembl_gene_id: azo0866
symbol: azo0866
gene_biotype: protein_coding
description:
  Hypothetical thioredoxin. Homology with BPP3919 of B. parapertussis of 38%. Participates in various redox reactions through the reversible oxidation of the active center dithiol to a disulfide. Tigrfam: dsbE: periplasmic protein thiol:disulfi signal peptide probable 1 TMHs; Family membership.


ensembl_gene_id: azo0867
symbol: azo0867
gene_biotype: protein_coding
description:
  Conserved hypothetical protein, 39% identity to TrEMBL;Q8XVP7; Signal Peptide present. Coils2 program reporting presence of coiled coil. No TMH present. TIGR00004: endoribonuclease L-PSP putat.


ensembl_gene_id: azo0868
symbol: mpl
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase; Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate by linking it to UDP-N-acetylmuramate. Belongs to the MurCDEF family. Mpl subfamily.


ensembl_gene_id: azo0869
symbol: azo0869
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to rsc3264 of R. solanacearum (trembl|Q8XUC7). Smart: Bacterial OsmY and nodulation domain (BON) The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. signal [...]


ensembl_gene_id: azo0870
symbol: gmhA
gene_biotype: protein_coding
description:
  Putative phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.


ensembl_gene_id: azo0871
symbol: azo0871
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to pa4424 of P. aeruginosa of 44% (pir|H83091). Pfam: Uncharacterised protein family UPF0102 (PF02021). Interpro: Protein of unkown function UPF0102 (IPR003509). no signal peptide. no TMHs.


ensembl_gene_id: azo0872
symbol: rsmI
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.


ensembl_gene_id: azo0873
symbol: pyrC
gene_biotype: protein_coding
description:
  Probable dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.


ensembl_gene_id: azo0874
symbol: azo0874
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to Daro03003273 of Dechloromonas aromatica of 35% (gi|41723286|ref|ZP_00150229.1|(NBCI ENTREZ)). No domains predicted. No TMHs. Signal peptide present; Conserved hypothetical protein.


ensembl_gene_id: azo0876
symbol: mraW
gene_biotype: protein_coding
description:
  SAM dependent methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.


ensembl_gene_id: azo0877
symbol: FtsL
gene_biotype: protein_coding
description:
  Putative cell division protein FtsL; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.


ensembl_gene_id: azo0878
symbol: FtsI
gene_biotype: protein_coding
description:
  Probable peptidoglycan glycosyltransferase; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily.


ensembl_gene_id: azo0879
symbol: murE
gene_biotype: protein_coding
description:
  Probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.


ensembl_gene_id: azo0880
symbol: murF
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.


ensembl_gene_id: azo0881
symbol: mraY
gene_biotype: protein_coding
description:
  phospho-N-acetylmuramoyl-pentapeptide transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.


ensembl_gene_id: azo0882
symbol: murD
gene_biotype: protein_coding
description:
  Probable UDP-N-acetylmuramoylalanine-D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.


ensembl_gene_id: azo0883
symbol: FtsW
gene_biotype: protein_coding
description:
  Cell division protein FtsW; Peptidoglycan polymerase that is essential for cell division. Belongs to the SEDS family. FtsW subfamily.


ensembl_gene_id: azo0884
symbol: murG
gene_biotype: protein_coding
description:
  Probable undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.


ensembl_gene_id: azo0887
symbol: FtsQ
gene_biotype: protein_coding
description:
  Putative cell division protein FtsQ; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly.


ensembl_gene_id: azo0888
symbol: FtsA
gene_biotype: protein_coding
description:
  Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.


ensembl_gene_id: azo0889
symbol: FtsZ
gene_biotype: protein_coding
description:
  Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.


ensembl_gene_id: azo0890
symbol: lpxC
gene_biotype: protein_coding
description:
  Probable UDP-3-O-acyl N-acetylglycosmaine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.


ensembl_gene_id: azo0891
symbol: azo0891
gene_biotype: protein_coding
description:
  Hypothetical membrane protein. No homology to the data bank. No domains predicted. signal peptide. 1 TMH.


ensembl_gene_id: azo0892
symbol: azo0892
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to CV4285 of C.violaceum of 32% (tremble:Q7NQ55). No domains predicted. No TMHs No signal peptide.


ensembl_gene_id: azo0893
symbol: secA
gene_biotype: protein_coding
description:
  Preprotein translocase SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family.


ensembl_gene_id: azo0895
symbol: argJ
gene_biotype: protein_coding
description:
  Probable arginine biosynthesis bifunctional protein ArgJ; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.


ensembl_gene_id: azo0897
symbol: azo0897
gene_biotype: protein_coding
description:
  Hypothetical secreted protein. Homology to pp3428 of P. putida of 26% (tremble:Q88HD2). Domain structure: 111 aa - 157 aa LysM; 232 aa - 313 aa TRP. Pfam: LysM domain; TRP. signal peptide. no TMHs.


ensembl_gene_id: azo0899
symbol: azo0899
gene_biotype: protein_coding
description:
  Hypothetical membrane protein. No good homology to a protein of similar size of the data bank. Pfam: FHA domain (PF00498). The forkhead-associated (FHA) domain is a putative nuclear signalling domain found in a variety of otherwise unrelated proteins. The FHA domain comprise approximately 55 to 75 amino acids and contains three highly conserved blocks separated by divergent spacer regions.To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phos [...]


ensembl_gene_id: azo0900
symbol: apaG
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; ApaG protein. In S.typhimurium mutations in apaG/corD give a phenotype of low-level Co(2+) resistance. They also decrease Mg(2+) efflux but not influx via the corA Mg(2+) transport system. 57% DUF525. Pfam:PF04379; DUF525; 1; High confidence in function and specificity.


ensembl_gene_id: azo0901
symbol: purB
gene_biotype: protein_coding
description:
  Adenylosuccinate lyase (Adenylosuccinase) (ASL); High confidence in function and specificity; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.


ensembl_gene_id: azo0902
symbol: azo0902
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to RS03757 of R.solanacearum of 44% (tremble:Q8XS71). No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo0903
symbol: secF
gene_biotype: protein_coding
description:
  Protein-export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: azo0904
symbol: secD
gene_biotype: protein_coding
description:
  Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: azo0905
symbol: yajC
gene_biotype: protein_coding
description:
  Probable preprotein translocase subunit YajC; The SecYEG-SecDF-YajC-YidC holo-translocon (HTL) protein secretase/insertase is a supercomplex required for protein secretion, insertion of proteins into membranes, and assembly of membrane protein complexes. While the SecYEG complex is essential for assembly of a number of proteins and complexes, the SecDF-YajC-YidC subcomplex facilitates these functions.


ensembl_gene_id: azo0906
symbol: azo0906
gene_biotype: protein_coding
description:
  Conserved hypothetical signal transduction protein. Homology to Daro03002984 of Dechloromonas aromatica of 39% (gi|53729872|ref|ZP_00150342.2|(NBCI ENTREZ)). No domains predicted. No signal peptide. No TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0907
symbol: tgt
gene_biotype: protein_coding
description:
  Queuine tRNA-ribosyltransferase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form th [...]


ensembl_gene_id: azo0908
symbol: queA
gene_biotype: protein_coding
description:
  S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).


ensembl_gene_id: azo0909
symbol: nhaR
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; Transcriptional activator protein nhaR (Na+/H+ antiporter regulatory protein). Plays a role in the positive regulation of nhaA. Similar to SWISSPROT: sprot|NHAR_ECOLI (34% Escherichia coli, and Shigella flexneri, transcriptional activator protein NhaR (na+/h+ antiporter regulatory protein)) InterPro: IPR000847 HTH_LysR. IPR009058 Winged helix DNA-binding. Pfam: PF00126 Bacterial regulatory helix-turn-helix protein,lysR family; High confidence in function and specificity.


ensembl_gene_id: azo0910
symbol: azo0910
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to ebD81 Azoarcus sp. EbN1 of 64% (gnl|keqq|eba:ebD81(KEGG)). No domains predicted. No signal peptid. No TMHs.


ensembl_gene_id: azo0911
symbol: yccA
gene_biotype: protein_coding
description:
  Probable carrier/transport protein; Hypothetical protein PA2604. pir:D85624: 57% identity.73% similarity SIMILARITY:Belongs to the BI1 family. InterPro:Uncharacterized protein family UPF0005 IPR006213; Bax_inhbtr1. IPR006214; UPF0005. Pfam:ZIP: Zinc transporter Probable glutamatereceptor Signal peptide present (SignalP predicted) and transmembrane helices 7 (TMHMM predicted) Pfam:PF01027; UPF0005; InterPro: Uncharacterized protein family UPF0005 2_A_01_02: Multidrug resistance protein; Specificity unclear.


ensembl_gene_id: azo0912
symbol: rosB
gene_biotype: protein_coding
description:
  Putative Potassium/proton antiporter; Probable potassium antiporter, rosB. 38% HPr_SerP_S.IPR004771; K_eff.IPR006153; Na_H_porter. IPR003148; TrkA_N. Pfam:PF00999; Na_H_Exchanger; 1.PF02254; TrkA_N; 1. TIGRFAMs:TIGR00932; 2a37; 1. TMhelix: 12; High confidence in function and specificity; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.


ensembl_gene_id: azo0913
symbol: ytfL2
gene_biotype: protein_coding
description:
  Probable hemolysin; Hypothetical protein sll0260. CBS domains are found in the intracellular regions of a number of different integral membrane proteins. Two CBS domains are found in intracellular loops of several voltage gated chloride channels. A family of magnesium transporters also contain CBS domains. TREMBL:Q8KEZ1: 61% identity, 74% similarity InterPro: Domain of unknown function DUF21 InterPro:IPR002550; CBS. IPR000644: CBS_domain. IPR005170: CorC_transpt-asc. Pfam: PF00571; CBS; 2. PF03471: CorC_HlyC; 1. PF01595: DUF21; gntP: gluconate transporter Signal peptide present Transme [...]


ensembl_gene_id: azo0914
symbol: terC
gene_biotype: protein_coding
description:
  Tellurium resistance protein terC. Could conceivably alter the intracellular level of tellurium in a manner leading to resistance. Alternatively its presence in the membrane may provide a barrier to entry of the tellurium ions.32% TerC. Pfam: PF03741; TerC; 1. TMHelix:9; High confidence in function and specificity.


ensembl_gene_id: azo0915
symbol: accA
gene_biotype: protein_coding
description:
  Probable acetyl-coenzyme a carboxylase carboxyl transferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.


ensembl_gene_id: azo0916
symbol: tilS
gene_biotype: protein_coding
description:
  Putative tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.


ensembl_gene_id: azo0917
symbol: azo0917
gene_biotype: protein_coding
description:
  Two-component response regulator; C4-dicarboxylate transport transcriptional regulatory protein,; High confidence in function and specificity.


ensembl_gene_id: azo0918
symbol: dctS
gene_biotype: protein_coding
description:
  Two-component sensor kinase; C4-dicarboxylate transport sensor protein,; High confidence in function and specificity.


ensembl_gene_id: azo0919
symbol: dctP2
gene_biotype: protein_coding
description:
  Probable c4-dicarboxylate-binding periplasmic protein; TRAP-dicarboxylate transporter. Binds c4-dicarboxylates; part of the binding-protein-dependent transport system for uptake of C4-dicarboxylates. 70% TRAP_transptDctP. Pfam:PF03480; SBP_bac_7; 1. TIGRFAMs:TIGR00787; dctP; 1. Signal peptide: present. TMhelix:1; High confidence in function and specificity.


ensembl_gene_id: azo0920
symbol: dctQ2
gene_biotype: protein_coding
description:
  Putative TRAP-type C4-dicarboxylate transport system, small permease; The dct locus encodes a high-affinity transport system for the C4-dicarboxylates malate,succinate, and fumarate. 45% DctQ. Pfam:PF04290; DctQ; 1. TMhelix:4; High confidence in function and specificity.


ensembl_gene_id: azo0921
symbol: dctM2
gene_biotype: protein_coding
description:
  Putative TRAP-type C4-dicarboxylate transport system, large permease; The dct locus encodes a high-affinity transport system for the C4-dicarboxylates malate,succinate, and fumarate. 60% DctM.IPR000252; DedA.IPR004681; TRAP_transptDctM. Pfam:PF06808; DctM; 1.PF00597; DedA; 1. TIGRFAMs:TIGR00786; dctM; 1. TMhelix:13. Signal peptide: present; High confidence in function and specificity.


ensembl_gene_id: azo0922
symbol: dedA
gene_biotype: protein_coding
description:
  DedA family protein, 57% identity(75% similarity) to TrEMBL;Q88QF4. TrEMBl;Q889M5(57% identity). SwissProt;P09548(55% identity) Has PF00597, DedA family;IPR000252;This family combines the DedA related proteins and YIAN/YGIK family. Members of this family are not functionally characterised. These proteins contain multiple predicted transmembrane regions; High confidence in function and specificity.


ensembl_gene_id: azo0923
symbol: ndk
gene_biotype: protein_coding
description:
  Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.


ensembl_gene_id: azo0924
symbol: rlmN
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.


ensembl_gene_id: azo0926
symbol: azo0926
gene_biotype: protein_coding
description:
  Transcriptional regulator, 36% identity to TrEMBL;Q88PJ8. Weak homology with other proteins spanning entire length. Prosite,PS50943; HTH_CROC1; The cro/C1-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 residues present in transcriptional regulators. The domain is named after the transcriptional repressors cro and C1 of temperate bacteriophages 434 and lambda, respectively; Specificity unclear.


ensembl_gene_id: azo0927
symbol: gcpE
gene_biotype: protein_coding
description:
  Probable 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.


ensembl_gene_id: azo0928
symbol: hisS
gene_biotype: protein_coding
description:
  Histidine--tRNA ligase; Histidyl-tRNA synthetase. hisS, 75% idemtity to TrEMBL;Q5P7B4. Has Pfam;PF00587, tRNA synthetase class II core domain (G, H, P, S and T).Other tRNA synthetase sub-families are too disIPR002314,tRNA-synt_2b. Has Pfam;PF03129,Anticodon binding domain. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases it is probably the anticodon binding domain; High confidence in function and specificity.


ensembl_gene_id: azo0929
symbol: azo0929
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Putative membrane protein, 32% identity to TrEMBL;Q7WHN2. Signal Peptide present; Specificity unclear.


ensembl_gene_id: azo0930
symbol: bamB
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: azo0931
symbol: engA
gene_biotype: protein_coding
description:
  Probable GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.


ensembl_gene_id: azo0932
symbol: hfq
gene_biotype: protein_coding
description:
  RNA-binding regulatory protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.


ensembl_gene_id: azo0933
symbol: hflX1
gene_biotype: protein_coding
description:
  Probable GTP-binding subunit of protease specific for phage lambda; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.


ensembl_gene_id: azo0936
symbol: azo0936
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to NE1283 of Nitrosomonas europaea of 60% (trembl|Q82V27). No domains predicted. Signal peptide. 1 TMH; Conserved hypothetical protein.


ensembl_gene_id: azo0937
symbol: hisZ
gene_biotype: protein_coding
description:
  Conserved hypothetical ATP phosphoribosyltransferase regulatory subunit; Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine.


ensembl_gene_id: azo0938
symbol: purA
gene_biotype: protein_coding
description:
  Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.


ensembl_gene_id: azo0939
symbol: vacB
gene_biotype: protein_coding
description:
  Exoribonuclease II; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.


ensembl_gene_id: azo0942
symbol: nasF
gene_biotype: protein_coding
description:
  Nitrate transport system, periplasmic-binding protein; Part of the ABC transporter complex NasFED involved in nitrate import. 59% Similar to the putative periplasmic-binding protein NasF in Klebsiella oxytoca. TREMBL:Q48466 InterPro:IPR010067; SsuA_fam.IPR006311; Tat. TIGRFAMs:TIGR01728; SsuA_fam; 1.TIGR01409; TAT_signal_seq; 1. Signal peptide present; High confidence in function and specificity.


ensembl_gene_id: azo0943
symbol: nasE
gene_biotype: protein_coding
description:
  Nitrate transport permease protein nasE. 41% Similar to the nitrate permease protein, nrtB in Synechococcus sp.Part of the ABC transporter complex nrtBCD involved in nitrate import.Probably responsible for the translocation of the substrate across the membrane. SWISSPROT:NRTB_SYNP7.P38044. InterPro:IPR000515; BPD_transp.IPR005889; NtrB. Pfam:PF00528; BPD_transp; 1. TIGRFAMs:TIGR01183; ntrB; 1. TMHelix: 4; High confidence in function and specificity.


ensembl_gene_id: azo0944
symbol: nasD
gene_biotype: protein_coding
description:
  Putative nitrate transport system, ATP-binding protein; Part of the ABC transporter complex nasFED involved in nitrate import. 64% Similar to the nitrate transport membrane protein, nasD in Klebsella oxytoca. Probably responsible for energy coupling to the transport system. SWISSPROT:NASD_KLEOX.P39459. InterPro:IPR003593; AAA_ATPase.IPR003439; ABC_transporter.IPR005890; NtrCD. Pfam:PF00005; ABC_tran; 1. TIGRFAMs:TIGR01184; ntrCD; 1; High confidence in function and specificity.


ensembl_gene_id: azo0945
symbol: cobA1
gene_biotype: protein_coding
description:
  Uroporphyrin-III C-methyltransferase (EC 2.1.1.107) (Urogen III methylase) (SUMT) (Uroporphyrinogen III methylase) (UROM). CATALYZES BOTH METHYLATIONS AT C-2 AND C-7 OF UROGEN III LEADING TO PRECORRIN-1 AND PRECORRIN-2; THEIR OXIDATIVE ESTERIFICATION GIVES RESPECTIVELY FACTOR I OCTAMETHYL ESTER AND SIROHYDROCHLORIN (BY SIMILARITY). dph5: diphthine synthase; High confidence in function and specificity.


ensembl_gene_id: azo0946
symbol: nasC
gene_biotype: protein_coding
description:
  Putative nitrate reducatse small subunit. Homology to nasC of K. oxytoca of 38% (trembl|Q48467). NasC probably mediates electron transfer from NADH to NasA, the nitrate reductase. InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR001327) Pfam: Pyridine nucleotide-disulfide oxidoreductase no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo0947
symbol: nasA
gene_biotype: protein_coding
description:
  Probable Nitrate reductase. Homology to nasA of K. oxytoca of 41% (sprot|NASA_KLEOX). Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants fungi and bacteria. InterPro: Prokaryotic molybdopterin oxidoreductases (IPR006655) Pfam: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain no signal peptide no TMH Helixturnhelix motif; High confidence in function and specificity; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.


ensembl_gene_id: azo0949
symbol: azo0949
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to Daro03002329 of Dechloromonas aromatica of 40% (gi|53730441|ref|ZP_00348795.1|(NBCI ENTREZ)). No domains predicted. No TMHs. Signal peptide present; Conserved hypothetical protein.


ensembl_gene_id: azo0951
symbol: azo0951
gene_biotype: protein_coding
description:
  Conserved hypothetical phosphomannose protein; 50%Cupin.IPR007113; Cupin_sup. Pfam:PF00190; Cupin; 1. 28%.


ensembl_gene_id: azo0952
symbol: azo0952
gene_biotype: protein_coding
description:
  Conserved hypothetical protein, 38% identity (50% similarity) to TrEMBL;Q7WXG4 Signal Peptide Present.TMH not Present. Has PF04471:Restriction endonuclease;(IPR007560:Mrr_cat):Prokaryotic family found in type II restriction enzymes containing the hallmark (D/E)-(D/E)XK active site. Presence of catalytic residues implicates this region in the enzymatic cleavage of DNA. PF01396:Topoisomerase DNA binding C4 zinc finger;(IPR000380 DNA_tpisomrase):Prokaryotic topoisomerase I, otherwise known as relaxing enzyme,untwisting enzyme or swivelase, catalyses the ATP-independent breakage of single- [...]


ensembl_gene_id: azo0953
symbol: nfsA
gene_biotype: protein_coding
description:
  Putative oxygen-insensitive NADPH nitroreductase. Homology to snrA of S. typhimurium of 37% (sprot|NFSA_SALTY) REDUCTION OF NITROAROMATIC COMPOUNDS USING NADH. REDUCES NITROFURAZONE BY A PING-PONG BI-BI MECHANISM POSSIBLY TO GENERATE A TWO-ELECTRON TRANSFER PRODUCT. MAJOR COMPONENT OF THE OXYGEN- INSENSITIVE NITROREDUCTASE ACTIVITY IN E.COLI. Pfam: Nitroreductase family no signal peptide no TMHs; Family membership; Belongs to the flavin oxidoreductase frp family.


ensembl_gene_id: azo0955
symbol: gufA
gene_biotype: protein_coding
description:
  Putative GufA protein. 31% Zn_transpt_Zip.InterPro: ZIP Zinc transporter Pfam: PF02535; Zip; 1. TMHelix: 9. Signal peptide present; Specificity unclear.


ensembl_gene_id: azo0956
symbol: cfa1
gene_biotype: protein_coding
description:
  Probable cyclopropane-fatty-acyl-phospholipid synthase. Homology to cfa of E. coli of 54% (Sprot:CFA_ECOLI) TRANSFERS A METHYLENE GROUP FROM S-ADENOSYL-L-METHIONINE TO THE CIS DOUBLE BOND OF AN UNSATURATED FATTY ACID CHAIN RESULTING IN THE REPLACEMENT OF THE DOUBLE BOND WITH A METHYLENE BRIDGE. Pfam: Cyclopropane-fatty-acyl-phosphotlipid no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo0957
symbol: dnaX
gene_biotype: protein_coding
description:
  DNA polymerase III subunit Tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.


ensembl_gene_id: azo0958
symbol: azo0958
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.


ensembl_gene_id: azo0959
symbol: recR
gene_biotype: protein_coding
description:
  Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.


ensembl_gene_id: azo0960
symbol: petA1
gene_biotype: protein_coding
description:
  Probable ubiquinol-cytochrome c reductase iron-sulfur protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.


ensembl_gene_id: azo0961
symbol: petB
gene_biotype: protein_coding
description:
  Ubiquinol-cytochrome c reductase cytochrome b protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.


ensembl_gene_id: azo0962
symbol: petC
gene_biotype: protein_coding
description:
  Conserved hypothetical ubiquinol-cytochrome c reductase cytochrome c1 protein. Homology to petC of R. solanacearum of 52% (trembl|Q8XVA4). Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. c1 functions as an electron donor to cytochrome c. InterPro: Cytochrome c1 (IPR002326) Pfam: Cytochrome_c1 signal peptide 1 TMH; Conserved hypothetical protein.


ensembl_gene_id: azo0963
symbol: sspA2
gene_biotype: protein_coding
description:
  Probable Stringent starvation protein A. Homology to sspA of E. coli of 43% (sprot|SSPA_ECOLI). FORMS AN EQUIMOLAR COMPLEX WITH THE RNA POLYMERASE HOLOENZYME (RNAP) BUT NOT WITH THE CORE ENZYME. IT IS SYNTHESIZED PREDOMINANTLY WHEN CELLS ARE EXPOSED TO AMINO ACID STARVATION AT WHICH TIME IT ACCOUNTS FOR OVER 50% OF THE TOTAL PROTEIN SYNTHESIZED. Pfam: Glutatione S-transferase,N-terminale domaine no TMHs; Family membership; Belongs to the GST superfamily.


ensembl_gene_id: azo0964
symbol: sspB
gene_biotype: protein_coding
description:
  Putative stringent starvation protein B. Homology to sspB of E. coli of 38% (sprot|SSPB_ECOLI) Seems to act in concert with sspA in the regulation of several proteins during exponential and stationary-phase growth. The exact function of sspB is not yet known. Pfam: Stringent starvation protein B no signal peptide no TMHs.


ensembl_gene_id: azo0966
symbol: azo0966
gene_biotype: protein_coding
description:
  Hemerythrin-like protein, 49% Identity to SProt;Q8Y1B3. Has PF01814, Hemerythrin HHE cation binding domain; IPR002063, Hemerythrin; Iteration of the HHE family found it to be related to Hemerythrin. It also demonstrated that what has been described as a single domain in fact consists of two cation binding domains. Members of this family occur all across nature and are involved in a variety of processes. For instance, in Nereis diversicolor P80255 binds Cadmium so as to protect the organism from toxicity. However Hemerythrin is classically described as Oxygen-binding through two attache [...]


ensembl_gene_id: azo0967
symbol: dadA1
gene_biotype: protein_coding
description:
  Probable D-amino acid dehydrogenase small subunit; The L-alanine catabolic pathway proceeds in two steps: racemization of the L-isomer to D-alanine by alanine racemase and oxidative deamination of D-alanine to pyruvate and ammonia by D- amino acid dehydrogenase. Similar to trembl|Q7NRT8 (52%) and to sprot|DADA_ECOLI (40%). Pfam (PF01266): D-amino acid oxidase; Specificity unclear.


ensembl_gene_id: azo0968
symbol: cbbF
gene_biotype: protein_coding
description:
  Putative fructose-1,6-bisphosphatase; Fructose-16-bisphosphatase cytosolic(D-fructose-16-bisphosphate 1-phosphohydrolase) (FBPase).Involved in the reaction: D-fructose 1,6-bisphosphate + H(2)O = D-fructose 6-phosphate + phosphate., 62% In_FB_phphtase. Pfam:PF00316; FBPase; 1; High confidence in function and specificity.


ensembl_gene_id: azo0969
symbol: azo0969
gene_biotype: protein_coding
description:
  Conserved hypothetical outer membrane protein. Homology to ne0930 of N. europaea of 44% (trembl|Q82VX0) Pfam: Bacterial surface protein signal peptide no TMHs; Family membership.


ensembl_gene_id: azo0970
symbol: azo0970
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to bb3356 of B. bronchiseptica of 83% (trembl|Q7WH54). Pfam: DUF534 This is a family of putative secreted proteins of unknown function. signal peptide no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo0971
symbol: azo0971
gene_biotype: protein_coding
description:
  Conserved hypothetical ABC transporter, permease protein. PART OF THE BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM. PROBABLY RESPONSIBLE FOR THE TRANSLOCATION OF THE SUBSTRATE ACROSS THE MEMBRANE. InterPro: Binding-system dependent bacterial transporters (araH livH/limM families) (IPR001851) Pfam: Branched-chain amino acid transport system/permease component no signal peptide 8 TMHs 2A78: Carboxylate/Amino Acid/Amine Tran; Specificity unclear.


ensembl_gene_id: azo0972
symbol: azo0972
gene_biotype: protein_coding
description:
  Probable ABC transporter, ATP-binding protein; Thiamine transport ATP-binding protein thiQ. PART OF THE BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM TBPA-THIPQ FOR THIAMINE AND TPP. PROBABLY RESPONSIBLE FOR ENERGY COUPLING TO THE TRANSPORT SYSTEM. TREMBL:Q7WH56: 84% identity, 92% similarity Description:putative abc-transporter atp-binding component InterPro: IPR003593; AAA_ATPase. IPR003439; ABC_transporter. Pfam:PF00005; ABC_tran; ProDom PD000006; ABC_transporter; 1. SMART SM00382; AAA recf: DNA replication and repair protein NO transmembrane helices; Function unclear.


ensembl_gene_id: azo0973
symbol: groES1
gene_biotype: protein_coding
description:
  Chaperonin GroES; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.


ensembl_gene_id: azo0974
symbol: groEL1
gene_biotype: protein_coding
description:
  Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.


ensembl_gene_id: azo0975
symbol: basR
gene_biotype: protein_coding
description:
  Probable two-component response regulatory protein,Response_reg. IPR001867; Trans_reg_C. Pfam: PF00072; response_reg. PF00486; trans_reg_C. SMART: SM00448; REC; Specificity unclear.


ensembl_gene_id: azo0977
symbol: azo0977
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to XCC4058 of Xanthomonas campestris of 55% (trembl|Q8P3L3) Has PF04341, Protein of unknown function,DUF485; IPR007436;This family includes several putative integral membrane proteins. no signal peptide 1 TMH; Conserved hypothetical protein.


ensembl_gene_id: azo0978
symbol: azo0978
gene_biotype: protein_coding
description:
  Conserved hypothetical sodium:solute symporter. Homology to an orf of R. capsulata of 81% (trembl|O68042). Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The solutes transported may be sugars, amino acids, nucleosides,inositols, vitamins, urea or anions, depending on the system. Tigrfam: sss: SSS sodium solute [...]


ensembl_gene_id: azo0979
symbol: tctD
gene_biotype: protein_coding
description:
  Probable transcriptional regulatory protein,Response_reg. IPR001867; Trans_reg_C. Pfam: PF00072; response_reg. PF00486; trans_reg_C. SMART: SM00448; REC. Transcriptional regulatory protein tctD. TRANSCRIPTIONAL ACTIVATOR OF THE TCTI TRICARBOXYLATE TRANSPORT SYSTEM OPERON; Specificity unclear.


ensembl_gene_id: azo0980
symbol: hemA
gene_biotype: protein_coding
description:
  HemA protein; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).


ensembl_gene_id: azo0981
symbol: prfA
gene_biotype: protein_coding
description:
  Peptide chain release factor; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.


ensembl_gene_id: azo0982
symbol: hemK
gene_biotype: protein_coding
description:
  HemK protein; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.


ensembl_gene_id: azo0983
symbol: azo0983
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to ne1911 of N. europaea of 67%. InterPro: Glutaredoxin-related protein (IPR004480) TIGR00365: glutaredoxin-related protein no signal peptide no TMHs; Belongs to the glutaredoxin family. Monothiol subfamily.


ensembl_gene_id: azo0984
symbol: azo0984
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to NE1634 of Nitrosomonas europaea of 34% (trembl|Q82U71(SRS)) No domains predicted. No TMHs Signal peptide present; Conserved hypothetical protein.


ensembl_gene_id: azo0985
symbol: azo0985
gene_biotype: protein_coding
description:
  Conserved hypothetical protein, 35% identity (56% similarity) to TrEMBL;Q82U70. Signal peptide Present. No TMH reported Present.


ensembl_gene_id: azo0986
symbol: azo0986
gene_biotype: protein_coding
description:
  Hypothetical Protein. No Good functional or similar proteins matching in the database. No domains, repeats,motifs or features present.


ensembl_gene_id: azo0987
symbol: azo0987
gene_biotype: protein_coding
description:
  Hypothetical protein predicted by Glimmer/Critica. No homology to data bank. no domains predicted. no signal peptide. no TMHs.


ensembl_gene_id: azo0989
symbol: argH
gene_biotype: protein_coding
description:
  ArgH protein; Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase) (ASAL); High confidence in function and specificity.


ensembl_gene_id: azo0991
symbol: algR
gene_biotype: protein_coding
description:
  Probable alginate biosynthesis regulatory protein AlgR,; High confidence in function and specificity.


ensembl_gene_id: azo0992
symbol: ppc
gene_biotype: protein_coding
description:
  Probable phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.


ensembl_gene_id: azo0993
symbol: hemC
gene_biotype: protein_coding
description:
  Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.


ensembl_gene_id: azo0994
symbol: hemD
gene_biotype: protein_coding
description:
  HemD protein; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.


ensembl_gene_id: azo0995
symbol: hemX
gene_biotype: protein_coding
description:
  Putative uroporphyrin-III C-methyltransferase. catalytic activity: 2 s-adenosyl-l-methionine + uroporphyrin iii = 2 s-adenosyl-l-homocysteine + sirohydrochlorin. pathway: siroheme and cobalamin biosynthesis; Specificity unclear.


ensembl_gene_id: azo0996
symbol: hemY
gene_biotype: protein_coding
description:
  HemY protein. involved in a late step of protoheme ix synthesis; High confidence in function and specificity.


ensembl_gene_id: azo0998
symbol: glcD1
gene_biotype: protein_coding
description:
  Probable glycolate oxidase subunit glcD. Homology to glcD of E. coli of 64% (sprot|GLCD_ECOLI) InterPro: FAD linked oxidase C-terminal (IPR004113); FAD linked oxidase N-terminal (IPR006093) Pfam: FAD binding domain; FAD linked oxidase, C-terminal domain Tigrfam: glcD: glycolate oxidase subunit GlcD no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo0999
symbol: azo0999
gene_biotype: protein_coding
description:
  Hypothetical membrane protein. No homology to the data bank. No domains predicted. No signal pepitde. 1 TMH.


ensembl_gene_id: azo1000
symbol: glcE
gene_biotype: protein_coding
description:
  Probable glycolate oxidase subunit GlcE. Homology to glcE of E. coli of 47% (sprot|GLCE_ECOLI) InterPro: FAD linked oxidase N-terminal (IPR006093) Pfam: FAD binding domain Tigrfam: glcD: glycolate oxidase subunit GlcD no singla peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo1001
symbol: glcF
gene_biotype: protein_coding
description:
  Probable glycolate oxidase iron-sulfur subunit. Homology to glcF of E. coli of 56% (sprot|GLCF_ECOLI) Pfam: Domain of unknown function (DUF224) (192-256 aa; 329-391 aa) no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo1003
symbol: pntAA
gene_biotype: protein_coding
description:
  Probable NAD(P) transhydrogenase, subunit alpha part 1. Homology to pntAA of R. rubrum of 44% (sprot|PNAA_RHORU). The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane. Tirfam: pntA: NAD(P) transhydrogenase alpha subunit Pfam: Alanine dehydrogenase/pyridine nucleotide dehydrogenase no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo1004
symbol: pntAB
gene_biotype: protein_coding
description:
  Conserved hypothetical NAD(P) transhydrogenase,subunit alpha part 2. Homology to pntA of X. axonopodis of 74% (trembl|Q8PNW6). The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane. 3 TMHs no signal peptide; High confidence in function and specificity.


ensembl_gene_id: azo1005
symbol: pntB
gene_biotype: protein_coding
description:
  Probable NAD(P) transhydrogenase, subunit beta; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.


ensembl_gene_id: azo1008
symbol: rhlE2
gene_biotype: protein_coding
description:
  Putative ATP-dependent RNA helicase rhlE; Family membership; Belongs to the DEAD box helicase family.


ensembl_gene_id: azo1009
symbol: rlmM
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily.


ensembl_gene_id: azo1010
symbol: tas
gene_biotype: protein_coding
description:
  Probable oxidoreductase Tas. Homology to tas of E. coli of 51% (sprot|TAS_ECOLI). InterPro: Aldo/keto reductase family (IPR001395) Pfam: Aldo/keto reductase family no signal peptide no TMHs; Function unclear.


ensembl_gene_id: azo1011
symbol: azo1011
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to Rgel02001790 of Rubrivivax gelatinosus of 45% (gi|47573892|ref|ZP_00243929.1|(NBCI ENTREZ)). No domains predicted. No TMHs. Signal peptide present; Conserved hypothetical protein.


ensembl_gene_id: azo1012
symbol: ugpB
gene_biotype: protein_coding
description:
  Glycerol-3-phosphate-binding periplasmic protein precursor. SN-glycerol-3-phosphate and glycerophosphoryl diester-binding protein interacts with the binding protein-dependent transport system ugpACE. 30% SBP_bac_1.IPR006061; SBP_dom1. Pfam:PF01547; SBP_bac_1; 1. Signal peptide:present; High confidence in function and specificity.


ensembl_gene_id: azo1013
symbol: ugpQ
gene_biotype: protein_coding
description:
  Probable glycerophosphodiester phosphodiesterase. Homology to ugpQ of E. coli of 45% (sprot|UGPQ_ECOLI). GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE HYDROLYZES DEACYLATED PHOSPHOLIPIDS TO G3P AND THE CORRESPONDING ALCOHOLS. Pfam: Glycerophosporyl diester phosphodiesterase no signal peptide; High confidence in function and specificity.


ensembl_gene_id: azo1014
symbol: ispB
gene_biotype: protein_coding
description:
  Octaprenyl-diphosphate synthase; Polyprenyl synthetase,82% identity to TrEMBL;Q5P1Y1. Has Pfam;PF00348, Polyprenyl synthetase.(IPR000092,Polyprenyl_synt)A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of  [...]


ensembl_gene_id: azo1016
symbol: lldA
gene_biotype: protein_coding
description:
  L-lactate dehydrogenase. Homology to lldA of N. meningitidis of 72% (trembl|Q51135). InterPro: FMN-dependent alpha-hydroxy acid dehydrogenases (IPR000262); Proteins binding FMN and related compounds core region (IPR003009 Pfam: FMN-dependent dehydrogenase no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo1017
symbol: comL
gene_biotype: protein_coding
description:
  Probable competence lipoprotein precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: azo1018
symbol: rluD
gene_biotype: protein_coding
description:
  Pseudouridylate synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: azo1019
symbol: azo1019
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to CV2191 of C.violaceum of 64% (tremble:Q7NVZ9). Has PF02578,Uncharacterised ACR, YfiH family COG1496. InterPro;IPR003730. No signal peptide. No TMHs. TIGR00726: conserved hypothetical protein; Belongs to the multicopper oxidase YfiH/RL5 family.


ensembl_gene_id: azo1020
symbol: azo1020
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to RS03993 of R.solanacearum of 48% (trembl|Q8XYX6(SRS)). No domains. No signal peptide. 1 TMH; Conserved hypothetical protein.


ensembl_gene_id: azo1021
symbol: phaC
gene_biotype: protein_coding
description:
  Probable polyhydroxyalkanoate synthase; Entry name :- TREMBL:Q9ZB54 Prim. accession # Q9ZB54 Identities = 290/560 (51%) InterPro:- IPR000073; A/b_hydrolase. IPR010941; PhaC_N. Pfam:- PF00561; Abhydrolase_1; 1. PF07167; PhaC_N; 1. Prediction: Signal peptide Signal peptide probability: 0.999 Number of predicted TMHs: 0; Family membership.


ensembl_gene_id: azo1022
symbol: phbB1
gene_biotype: protein_coding
description:
  The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases,SWISSPROT:P14697 (60% identity); TREMBL:Q8XYX3 (59% identity). Pfam (PF00106): Short chain dehydrogenase; High confidence in function and specificity.


ensembl_gene_id: azo1023
symbol: phbB2
gene_biotype: protein_coding
description:
  The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases,SWISSPROT:P14697 (62% identity); TREMBL:Q8XYX3 (62% identiy). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase. SignalP reporting signal peptide; High confidence in function and specificity.


ensembl_gene_id: azo1024
symbol: phbF
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; phbF protein, 57% identity to TrEMBL;Q7NYA7. Has 2 copies of PF05233, PHB accumulation regulatory domain;IPR007897, PHB_accumulat: The proteins this domain is found in are typically involved in regulating polymer accumulation in bacteria, particularly poly-beta-hydroxybutyrate (PHB); High confidence in function and specificity.


ensembl_gene_id: azo1025
symbol: rimO
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.


ensembl_gene_id: azo1026
symbol: ychK
gene_biotype: protein_coding
description:
  Probable esterase; Hypothetical protein ychK. TREMBL:Q89IT4: 42% identity, 58% similarity InterPro: Uncharacterized protein family UPF0028 InterPro:IPR002641; Patatin. Pfam:PF01734; Patatin hypA: hydrogenase expression/formation Non-secretory protein with signalpeptide probability:0.141 (SignalP predicted) Absence of TMH's; Family membership.


ensembl_gene_id: azo1027
symbol: glcD2
gene_biotype: protein_coding
description:
  Putative glycolate oxidase subunit GlcD. Homology to glcD of E. coli of 32% (sprot|GLCD_ECOLI). InterPro: FAD linked oxidase C-terminal (IPR004113);m FAD linked oxidas, N-terminal (IPR006093) Pfam: FAD binding domain; FAD linked oxidase, C-terminal domain Tigrfam: glcD: glycolate oxidase subunit GlcD no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo1028
symbol: hbdA
gene_biotype: protein_coding
description:
  Probable 3-hydroxybutyryl-CoA dehydrogenase; Activity:- (S)-3-hydroxybutanoyl-CoA + NADP+ = 3-acetoacetyl-CoA + NADPH + H+ Entry name :- TREMBL:Q89GX2 Prim. accession # Q89GX2 Identities = 177/280 (63%) InterPro:- IPR006108; 3HCDH_C. IPR006176; 3HCDH_N. IPR008927; 6DGDH_C_like. IPR000205; NAD_BS. Pfam :-PF00725; 3HCDH; 1. PF02737; 3HCDH_N; 1. Prediction: Signal peptide Signal peptide probability: 0.873 Number of predicted TMHs: 0; Family membership.


ensembl_gene_id: azo1029
symbol: rho
gene_biotype: protein_coding
description:
  Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.


ensembl_gene_id: azo1030
symbol: trxA1
gene_biotype: protein_coding
description:
  Thioredoxin-disulfide reductase. Homology to trxA of T. ferrooxidans of 69% (THIO_THIFE). Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide. InterPro: Thioredoxin (IPR006662) Pfam: Thioredoxin no signal peptide no TMHs; Specificity unclear.


ensembl_gene_id: azo1031
symbol: fdxA
gene_biotype: protein_coding
description:
  Probable ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.


ensembl_gene_id: azo1032
symbol: azo1032
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; TREMBL:Q8XZ43; 52% identity, 70% similarity. TREMBL:Q8F5Y8; 30% identity, 56% similarity. Protein At5g10860 mitochondrial precursor. IPR000644: CBS domain Pfam:PF00571 - GARS_N TIGRFAM: rrf2 family, KpsF/GutQ family (by similarity) kpsF: KpsF/GutQ family protein; Specificity unclear.


ensembl_gene_id: azo1033
symbol: fadD1
gene_biotype: protein_coding
description:
  Long-chain-fatty-acid-CoA ligase; Esterification concomitant with transport of exogenous long-chain fatty acids into metabolically active CoA thioesters for subsequent degradation or incorporation into phospholipids, TREMBL:Q7NY16 (61% identity); TREMBL:Q7WLG0 (63% identity). InterPro (IPR000873): AMP-dependent synthetase and ligase Pfam (PF00501): AMP-binding enzyme; High confidence in function and specificity.


ensembl_gene_id: azo1034
symbol: ilvB
gene_biotype: protein_coding
description:
  Acetolactate synthase isozyme I large subunit (AHAS-I) (Acetohydroxy-acid synthase I large subunit) (ALS-I). InterPro: Acetolactate synthase large subunit biosynthetic type acolac_lg: acetolactate synthase large subunit,biosynthetic type; High confidence in function and specificity.


ensembl_gene_id: azo1035
symbol: ilvN
gene_biotype: protein_coding
description:
  Acetolactate synthase isozyme I small subunit (EC 2.2.1.6) (AHAS-I) (Acetohydroxy-acid synthase I small subunit) (ALS-I). InterPro: Acetolactate synthase small subunit acolac_sm: acetolactate synthase small subunit; High confidence in function and specificity.


ensembl_gene_id: azo1036
symbol: aroC
gene_biotype: protein_coding
description:
  AroC protein; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.


ensembl_gene_id: azo1037
symbol: azo1037
gene_biotype: protein_coding
description:
  Putative transport protein. Similarity to sugar transporters (lacY): lactose permease 2A0105.Similar to POT family of proteins with DUF domains and 12 transmembrane helices. 31% identity and 47% similarity to putative MFS metabolite transporter from Pseudomonas aeruginosa PA01; Family membership.


ensembl_gene_id: azo1038
symbol: azo1038
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to bb2112 of B. bronchiseptica of 55% (trembl|Q7WKJ4). Pfam: Peptidase family M48 signal peptide no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo1039
symbol: leuC
gene_biotype: protein_coding
description:
  LeuC protein; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.


ensembl_gene_id: azo1040
symbol: leuD
gene_biotype: protein_coding
description:
  LeuD protein; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.


ensembl_gene_id: azo1041
symbol: leuB
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.


ensembl_gene_id: azo1042
symbol: asd
gene_biotype: protein_coding
description:
  Asd protein; Aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. Similar to sprot|DHAS_ECOLI (67%) and to trembl|Q845W2 (75%). Pfam: Semialdehyde dehydrogenase,dimerisation Pfam: Semialdehyde dehydrogenase, NAD binding; High confidence in function and specificity.


ensembl_gene_id: azo1043
symbol: fimV1
gene_biotype: protein_coding
description:
  Putative type 4 pilus biogenesis; In Pseudomonas aeruginosa, FimV ist probable involved in remodelling of the peptidoglycan layer to enable assembly of the type IV fimbrial structure and machinery. And it is also required for twitching motility. Similar to trembl|O87015 (28%). Pfam (PF01476): LysM domain Pfam (PF04102): SlyX, may be a coiled-coil structure SignalP reporting Signal peptide; Function unclear.


ensembl_gene_id: azo1044
symbol: azo1044
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to ebA4769 of Azoarcus sp. EbN1 of 53% (gnl|keqq|eba:ebA4769(KEGG)). Pfam: Cobalt transport protein. signal peptide. 3 TMHs; Family membership.


ensembl_gene_id: azo1045
symbol: truA
gene_biotype: protein_coding
description:
  Pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.


ensembl_gene_id: azo1046
symbol: trpF
gene_biotype: protein_coding
description:
  N-(5-phosphoribosyl)anthranilate isomerase (PRAI) catalyzes the third step of tryptophan biosynthesis. Similar to sprot|TRPF_RALSO (56%) and to sprot|TRPF_PSEAE (58%). Pfam (PF00697): N-(5'phosphoribosyl)anthranilate isomerase (PRAI); High confidence in function and specificity.


ensembl_gene_id: azo1047
symbol: trpB
gene_biotype: protein_coding
description:
  TrpB protein; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.


ensembl_gene_id: azo1048
symbol: trpA
gene_biotype: protein_coding
description:
  TrpA protein; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.


ensembl_gene_id: azo1049
symbol: accD
gene_biotype: protein_coding
description:
  Probable acetyl-coenzyme A carboxylase carboxyl transferase subunit b; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.


ensembl_gene_id: azo1050
symbol: folC
gene_biotype: protein_coding
description:
  Dihydrofolate synthase / Tetrahydrofolylpolyglutamate synthase; FolC bifunctional protein [Includes: Folylpolyglutamate synthase (EC 6.3.2.17) (Folylpoly-gamma-glutamate synthetase) (FPGS); Dihydrofolate synthase (EC 6.3.2.12)]. Conversion of folates to polyglutamate derivatives; High confidence in function and specificity.


ensembl_gene_id: azo1051
symbol: azo1051
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane proteine. Homology to BB2598 of Bordetella bronchiseptica of 37% (trembl|Q7WJA1(SRS)). Has 2 copies of PF05036, Sporulation related repeat;IPR007730, SPOR; This 35 residue repeat is found in proteins involved in sporulation and cell division such as FtsN, DedD, and CwlM. This repeat might be involved in binding peptidoglycan (Bateman A pers obs). FtsN is an essential cell division protein with a simple bitopic topology, a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. These repeats  [...]


ensembl_gene_id: azo1052
symbol: cvpA
gene_biotype: protein_coding
description:
  Colicin V production protein (dedE protein) (Pur regulon 18 kDa protein). REQUIRED FOR COLICIN V PRODUCTION FROM PLASMID INCFI COLV3-K30. TREMBL:Q82WH7: 29% identity,38% similarity InterPro:IPR003825; Colicin_V. Pfam:PF02674; Colicin_V TIGR00304: conserved hypothetical protei Signal peptide present (Signal P predicted) TMH's 4 (TMHMM predicted); High confidence in function and specificity.


ensembl_gene_id: azo1053
symbol: purF
gene_biotype: protein_coding
description:
  Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.


ensembl_gene_id: azo1054
symbol: metZ
gene_biotype: protein_coding
description:
  Cys/Met metabolism pyridoxal-phosphate-dependent enzyme; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.


ensembl_gene_id: azo1055
symbol: lpxH
gene_biotype: protein_coding
description:
  Putative UDP-2,3-diacylglucosamine hydrolase; Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: azo1056
symbol: ppiB
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase B; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.


ensembl_gene_id: azo1057
symbol: ppiA
gene_biotype: protein_coding
description:
  Probable peptidyl-prolyl cis-trans isomerase A; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.


ensembl_gene_id: azo1058
symbol: azo1058
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted proteins. Homology to of Dechloromonas aromatica of 56% (gi|41723709|ref|ZP_00150619.1|(NBCI ENTREZ)). Signal Peptide Present. No TMH present. Has PF03734:(IPR005490)ErfK/YbiS/YcfS/YnhG;This family of proteins are found in a range of bacteria. The conserved region contains a conserved histidine and cysteine,suggesting that these proteins have an enzymatic activity. Several members of this family contain peptidoglycan binding domains. So these proteins may use peptidoglycan or a precursor as a substrate; Conserved hypothetical protein.


ensembl_gene_id: azo1059
symbol: azo1059
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to Daro03002816 of Dechloromonas aromatica of 42% (gi|53730051|ref|ZP_00348646.1|(NBCI ENTREZ)). domain structure: 59 aa - 92 aa TRP; 93 aa- 126 aa TRP; 127 aa -155 aa TRP. InterPro: TPR repeat (IPR001440); Type I antifreeze protein (IPR000104). Pfam: TRP Domain. signal peptide. no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo1060
symbol: cysS
gene_biotype: protein_coding
description:
  CysS protein; Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA ligase) (CysRS). InterPro: Cysteinyl-tRNA synthetase cysS: cysteinyl-tRNA synthetase; High confidence in function and specificity; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: azo1061
symbol: azo1061
gene_biotype: protein_coding
description:
  This family includes extracellular ligand binding domains of a wide range of receptors and it also includes the bacterial amino acid binding proteins of known structure. Similar to trembl|Q8XQ39 (40%) and to trembl|Q89G00 (32%). Pfam (PF01094): Receptor family ligand binding region SignalP reporting Signal peptide; Family membership.


ensembl_gene_id: azo1062
symbol: dnaJ1
gene_biotype: protein_coding
description:
  Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]


ensembl_gene_id: azo1064
symbol: grpE
gene_biotype: protein_coding
description:
  Probable heat shock protein GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several round [...]


ensembl_gene_id: azo1065
symbol: azo1065
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to an orf of Polaromonas sp. JS666 of 43% (ZP_00361754). No domains predicted. No singal peptide. No TMHs.


ensembl_gene_id: azo1067
symbol: serC
gene_biotype: protein_coding
description:
  Phosphoserine transaminase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.


ensembl_gene_id: azo1068
symbol: pheA
gene_biotype: protein_coding
description:
  Bifunctional chorismate mutase/prephenate dehydratase P-protein, pheA,; High confidence in function and specificity.


ensembl_gene_id: azo1069
symbol: hisC1
gene_biotype: protein_coding
description:
  Histidinol-phosphate aminotransferase 2,; High confidence in function and specificity; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.


ensembl_gene_id: azo1070
symbol: tyrA
gene_biotype: protein_coding
description:
  Prephenate dehydrogenases are involved in tyrosine biosynthesis. Similar to trembl|Q7NSL5 (54%) and to trembl|Q82XD9 (47%). Pfam: PDH, Prephenate dehydrogenase. TMHMM reporting one Tmhelix. SignalP reporting Signal peptide; Specificity unclear.


ensembl_gene_id: azo1071
symbol: aroA
gene_biotype: protein_coding
description:
  3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate; Belongs to the cytidylate kinase family. Type 1 subfamily.


ensembl_gene_id: azo1072
symbol: rpsA
gene_biotype: protein_coding
description:
  30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.


ensembl_gene_id: azo1073
symbol: ihfB
gene_biotype: protein_coding
description:
  Probable integration host factor, beta-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.


ensembl_gene_id: azo1074
symbol: azo1074
gene_biotype: protein_coding
description:
  38% identity with Hypothetical protein from Chromobacterium violaceum TrEMBL:Q7NTL0,Genename CV3044 Signal Peptide present TMHMM reporting for transmembrane helices:2 present; Conserved hypothetical protein.


ensembl_gene_id: azo1075
symbol: lapB
gene_biotype: protein_coding
description:
  Conserved hypothetical transferase protein; Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane; Belongs to the LapB family.


ensembl_gene_id: azo1076
symbol: ugd
gene_biotype: protein_coding
description:
  UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase) (UDP-GlcDH) (UDPGDH); High confidence in function and specificity.


ensembl_gene_id: azo1077
symbol: cysM
gene_biotype: protein_coding
description:
  Cysteine synthase chloroplast precursor,; High confidence in function and specificity; Belongs to the cysteine synthase/cystathionine beta- synthase family.


ensembl_gene_id: azo1078
symbol: azo1078
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Probable DNA polymerase epsilon catalytic subunit A (EC 2.7.7.7) (DNA polymerase II subunit A). TIGR00099: conserved hypothetical protein; Function unclear.


ensembl_gene_id: azo1079
symbol: thrS
gene_biotype: protein_coding
description:
  ThrS protein; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). Also edits incorrectly charged L-seryl-tRNA(Thr).


ensembl_gene_id: azo1080
symbol: infC
gene_biotype: protein_coding
description:
  Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.


ensembl_gene_id: azo1081
symbol: rpmI
gene_biotype: protein_coding
description:
  50S ribosomal protein L35; Family membership; Belongs to the bacterial ribosomal protein bL35 family.


ensembl_gene_id: azo1082
symbol: rplT
gene_biotype: protein_coding
description:
  50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.


ensembl_gene_id: azo1083
symbol: pheS
gene_biotype: protein_coding
description:
  Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) (Phenylalanine--tRNA ligase alpha chain) (PheRS). InterPro: Phenylalanyl-tRNA synthetase alpha subunit pheS: phenylalanyl-tRNA synthetase a; High confidence in function and specificity; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.


ensembl_gene_id: azo1084
symbol: pheT
gene_biotype: protein_coding
description:
  Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) (Phenylalanine--tRNA ligase beta chain) (PheRS); High confidence in function and specificity; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.


ensembl_gene_id: azo1085
symbol: ihfA
gene_biotype: protein_coding
description:
  Integration host factor alpha-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.


ensembl_gene_id: azo1086
symbol: azo1086
gene_biotype: protein_coding
description:
  Putative MerR-family transcriptional regulator,similar toTREMBL: trembl|Q83C17 (51% Coxiella burnetii,cbu1319) Pfam: PF00376 MerR family regulatory protein. HTH reporting nucleic acid binding motif.


ensembl_gene_id: azo1087
symbol: surE
gene_biotype: protein_coding
description:
  Phosphoric-monoester phosphohydrolase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.


ensembl_gene_id: azo1088
symbol: pcm2
gene_biotype: protein_coding
description:
  protein-L-isoaspartate (D-aspartate) O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.


ensembl_gene_id: azo1089
symbol: nlpD
gene_biotype: protein_coding
description:
  Conserved hypothetical lipoprotein. Homology to nlpD of R. gelatinosus of 43% (trembl|Q9JP90) InterPro: Peptidase family M23/M37 (IPR002886); LysM motif (IPR002482) Pfam: LysM domain; Peptidase family m23/M27 signal peptide no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo1090
symbol: rpoS
gene_biotype: protein_coding
description:
  Putative RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response.


ensembl_gene_id: azo1091
symbol: mltB
gene_biotype: protein_coding
description:
  Putative membrane-bound lytic murein transglycosylase. homology to mltb of E. coli of 38% (sprot|MLTB_ECOLI) Murein-degrading enzyme. Catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N- acetylglucosamine residues in peptidoglycan. May play a role in recycling of muropeptides during cell elongation and/or cell division. no domains prediced signal peptide no TMHs; Family membership.


ensembl_gene_id: azo1092
symbol: azo1092
gene_biotype: protein_coding
description:
  Conserved hypotetical membrane protein. Homology to RSp0111 of R. solanacearum of 41% (trembl|Q8XTJ7(SRS)) Pfam: Transglutaminase-like superfamily signal peptide probable 4 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo1093
symbol: azo1093
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein. Homology to RS03012 of Ralstonia solanacearum of 40% (trembl|Q8XTJ8) InterPro: Protein of unknown function DUF58 This domain is found in a family of prokaryotic proteins that have no known function. Proteins belonging to this family include hypothetical proteins from eubacteria and archaebacteria. Some of these proteins also contain the Von Willebrand factor, type A domain InterterPro: IPR002881; DUF58. Pfam: PF01882; DUF58; Non-secretory with low signal peptide probability (Signal P predicted). TMHMM predicted 2 transmembrane helices; Conserved [...]


ensembl_gene_id: azo1094
symbol: moxR1
gene_biotype: protein_coding
description:
  MoxR protein (MxaR protein). MAY BE INVOLVED IN THE REGULATION OF FORMATION OF ACTIVE METHANOL DEHYDROGENASE. TREMBL:Q883V0: 60% identity, 73% similarity SMART: SM00382; AAA InterPro: IPR003593; AAA_ATPase. IPR001270; Chaprnin_clpA/B. IPR003442; UPF0079. Pfam: PF02367; UPF0079; Pfam: Mg_chelatase:Magnesium chelatase, subunit ChlI ruvB: Holliday junction DNA helicase Ru No signal peptide and transmembrane helices; High confidence in function and specificity.


ensembl_gene_id: azo1095
symbol: azo1095
gene_biotype: protein_coding
description:
  Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of an ancient protein superfamily, TREMBL:Q7VZF1 (58% identity); TREMBL:Q7NRU4 (57% identity). InterPro (IPR000286): Histone deacetylase family Pfam (PF00850): Histone deacetylase domain; Family membership.


ensembl_gene_id: azo1096
symbol: dapA
gene_biotype: protein_coding
description:
  Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).


ensembl_gene_id: azo1097
symbol: nlpB
gene_biotype: protein_coding
description:
  Putative lipoprotein. Homology to nlpB of E. coli of 20% (sprot|NLPB_ECOLI) This family consists of a number of bacterial lipoproteins often known as NlpB or DapX. This lipoprotein is detected in outer membrane vesicles in Escherichia coli and appears to be nonessential. Pfam: NlpB/DapX lipoprotein singal peptide no TMHs; Family membership.


ensembl_gene_id: azo1098
symbol: azo1098
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to NMB1523 of N.meningitidis of 50% (tremble:Q9JYL7) No domains predicted. No TMHs Signal Peptide present; Conserved hypothetical protein.


ensembl_gene_id: azo1099
symbol: azo1099
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to CV3581 of C.violaceum of 48% (tremble:Q7NS46) SM00558;JmjC:Probable enzymes, but of unknown functions,that regulate chromatin reorganisation processes. No signal peptide or TMH present. lytR_cpsA_psr: cell envelope-related fu.


ensembl_gene_id: azo1100
symbol: rlmD
gene_biotype: protein_coding
description:
  Putative 23S rRNA (Uracil-5-) methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.


ensembl_gene_id: azo1101
symbol: azo1101
gene_biotype: protein_coding
description:
  Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70) (Uracil hydrolyase). Responsible for synthesis of pseudouridine from uracil-2457 in 23S ribosomal RNA; Family membership; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: azo1102
symbol: azo1102
gene_biotype: protein_coding
description:
  Conserved hypothetical secreted protein. Homology to rsc2494 of R. solanacearum of 48% (trembl|Q8XWI0(SRS)). Pfam: DUF192 signal peptide no TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo1103
symbol: flhB
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.


ensembl_gene_id: azo1104
symbol: flhA
gene_biotype: protein_coding
description:
  Flagellar biosynthesis protein flhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.


ensembl_gene_id: azo1105
symbol: flhF
gene_biotype: protein_coding
description:
  Putative flagellar biosynthesis protein flhF (Flagella associated GTP-binding protein). Necessary for flagellar priosinthesis. May be involved in translocation of the flagellum (by similarity). Belongs to the family of of subunits of the signal recognition particale in bacteria like FtsY, the pilA protein and the flagellar biosynthesis protein flhF. InterPro: AAA ATPase superfamily, GTP-binding signal recognition particell (SRP54) G-domain no signal peptide no TMHs; Family membership.


ensembl_gene_id: azo1106
symbol: fleN
gene_biotype: protein_coding
description:
  Hypothetical flagellar related protein FleN. Homology to fleN of Pseudomonas fluorescens of 27% (AAN03366). No domains predicted. No signal peptide. No TMHs.


ensembl_gene_id: azo1107
symbol: fliA
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily.


ensembl_gene_id: azo1108
symbol: azo1108
gene_biotype: protein_coding
description:
  Flagellar motor protein MotA (Chemotaxis motA protein). Required for rotation of the flagellar motor. Probable transmembrane proton channel (By similarity). Pfam: MotA/TolQ//ExbB proton channel family signal peptide probable 4 TMHs; High confidence in function and specificity.


ensembl_gene_id: azo1109
symbol: tar
gene_biotype: protein_coding
description:
  Putative aspartate chemoreceptor protein; E. coli uses five MCP-family receptors to promote chemotactic movements toward different attractant compounds: Tar is the aspartate and maltose chemoreceptor. Methyl-accepting chemotaxis protein,; Specificity unclear.


ensembl_gene_id: azo1110
symbol: motB1
gene_biotype: protein_coding
description:
  Flagellar motor protein MotB (Chemotaxis motB protein. Required for the rotation of the flagellar motor. Might be a linker that fastens the torque-generating machinery to the cell wall. Pfam: OmpA family no signal peptide probable 1 TMH; High confidence in function and specificity.


ensembl_gene_id: azo1111
symbol: dcrH2
gene_biotype: protein_coding
description:
  Putative hemerythrin-like protein; DcrH:hemerythrin protein, is transmembrane methyl-accepting protein probably involved in bacterial chemotaxis. 31% Hemerythrin. Pfam:PF01814; Hemerythrin; 1; High confidence in function and specificity.


ensembl_gene_id: azo1112
symbol: parC
gene_biotype: protein_coding
description:
  DNA topoisomerase IV subunit A; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.


ensembl_gene_id: azo1113
symbol: azo1113
gene_biotype: protein_coding
description:
  Conserved hypothetical protein. Homology to Bucepa03000705 of Burkholderia cepacia of 33% (gi|46323973|ref|ZP_00224335.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.


ensembl_gene_id: azo1114
symbol: lhpp
gene_biotype: protein_coding
description:
  Phospholysine phosphohistidine inorganic pyrophosphate phosphatase. Enzyme that hydrolyzes not only oxygen-phosphorus bonds in inorganic pyrophosphate but also nitrogen-phosphorus bonds in phospholysine,phosphohistidine and imidodiphosphate in vitro. 38% HAD_SF_IIA.IPR006355; HAD_SF_IIA_hyp2.IPR005834; Hydrolase. Pfam:PF00702;Hydrolase; 1. TIGRFAMs:TIGR01460; HAD-SF-IIA; 1.TIGR01458; HAD-SF-IIA-hyp3; 1. TMHelix:1; High confidence in function and specificity.


ensembl_gene_id: azo1115
symbol: parE
gene_biotype: protein_coding
description:
  Topoisomerase IV subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily.


ensembl_gene_id: azo1116
symbol: azo1116
gene_biotype: protein_coding
description:
  Conserved hypothetical membrane protein,TrEMBL;Q8NSJ9(49% identity,73% similarity),TrEMBL;Q7VSN7(53% identity, 72% similarity). Has 2 PF03458(IPR005115):UPF0126 domain;Domain always found as pair in bacterial membrane proteins of unknown function. This domain contains three transmembrane helices. The conserved glycines are suggestive of an ion channel (C. Yeats unpublished obs.). signal peptide 6 TMHs; Conserved hypothetical protein.


ensembl_gene_id: azo1117
symbol: aceA
gene_biotype: protein_coding
description:
  AceA protein; Isocitrate lyase. Homology to aceA of E. coli of 73% (sprot|ACEA_ECOLI). Isocitrate lyase is an enzyme that catalyzes the conversion of isocitrate to succinate and glyoxylate. This is the first step in the glyoxylate bypass, an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. InterPro: Isocitrate lyase (IPR000918) Pfam: Isocitrate lyase family no signal peptide no TMHs; High confidence in function and specificity.


ensembl_gene_id: azo1119
symbol: crtI
gene_biotype: protein_coding
description:
  Phytoene dehydrogenase (EC 1.14.99.-) (Phytoene desaturase). Phytoene dehydrogenase (phytoene desaturase) is an enzyme of carotenoid biosynthesis that converts phytoene into zeta-carotene via the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene, TREMBL:Q8XYC4 (50% identity); SWISSPROT:P06108 (26% identity). InterPro (IPR008150): Bacterial-type phytoene dehydrogenase Pfam (Phytoene_dh): Phytoene dehydrogenase related enzyme; High confidence in function and specificity.


ensembl_gene_id: azo1120
symbol: azo1120
gene_biotype: protein_coding
description:
  The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases,TREMBL:Q8XYC0 (36% identity); TREMBL:Q9EX74 (34% identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase; Specificity unclear.


ensembl_gene_id: azo1121
symbol: azo1121
gene_biotype: protein_coding
description:
  This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoatesynthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, TREMBL:Q9HZE2 (34% identity); TREMBL:Q8XSM9 (39% identity). Pfam (PF00857): Isochorismatase family; Family membership.


ensembl_gene_id: azo1122
symbol: carBa1
gene_biotype: protein_coding
description:
  Putative dioxygenase, hydroxylase small component; Ring hydroxylating dioxygenases are multicomponent 1,2-dioxygenase complexes that convert closed-ring structures to non-aromatic cis-diols. The beta subunit is may be responsible for the substrate specificity of the enzyme. Putative 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase, CarBa. Involved in the aerobic degradation of carbazole by P.resinovorans sp. strain CA10. XlyY: Benzene 12-dioxygenase beta subunit (EC 1.14.12.3), involved in benzoate degradation.Degradation of benzoate to 2-hydro-12-dihydroxybenzoate (dhb).; Conserved hypotheti [...]


ensembl_gene_id: azo1123
symbol: carBb1
gene_biotype: protein_coding
description:
  Putative dioxygenase hydroxylase large component; Ring hydroxylating dioxygenases are multicomponent 1,2-dioxygenase complexes that convert closed-ring structures to non-aromatic cis-diols. Hydroxylase large component of 1,2-dioxygenase protein complex, involved in aromatic compounds degradation. 81% simialr to a Putative 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase, CarBb. Involved in the aerobic degradation of carbazole by Pseudomonas resinovorans sp. strain CA10. TREMBL:Q8GI28 InterPro:IPR005806; Rieske_reg.IPR001663; Ring_hydroxyl_A. Pfam:PF00355; Rieske; 1. PF00848; Ring_hydroxyl_A;  [...]


ensembl_gene_id: azo1124
symbol: vanB1
gene_biotype: protein_coding
description:
  Probable vanillate O-demethylase oxidoreductase (Vanillate degradation ferredoxin-like protein). Homology to vanB of P. sp HR199 of 40% (sprot|VANB_PSEUH). The vanillate demethylase (EC:1.14.13.82) consists of two proteins: an oxygenase and an oxygenase reductase (VanA and VanB). This enzyme is involved in the vanillate degradation, a key intermediate in the degradation of lignin. InterPro: NADH:cytochrome b5 reductase (CBR)(IPR001834); Ferredoxin (IPR001041); Oxidoreductase FAD and NAD(P) binding domain (IPR001433) Pfam: Oxidoredutase FAD-binding domain; Oxidoreductase NAD-binding dom [...]


ensembl_gene_id: azo1125
symbol: azo1125
gene_biotype: protein_coding
description:
  ABC transporter permease protein; Branched-chain amino acid transport system typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system.The integral inner-membrane proteins translocate the substrate across the membrane. Similar to trembl|Q7W060 (64%) and to sprot|LIVH_ECOLI (24%). Pfam (PF02653): Branched-chain amino acid transport system / permease component TMHMM reporting eight Tmhelix; Specificity unclear.


