# geneInfo

ensembl_gene_id: Calkr_0001
symbol: dnaA
gene_biotype: protein_coding
description:
  Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.


ensembl_gene_id: Calkr_0002
symbol: ADQ39595.1
gene_biotype: protein_coding
description:
  DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]


ensembl_gene_id: Calkr_0003
symbol: recF
gene_biotype: protein_coding
description:
  DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.


ensembl_gene_id: Calkr_0005
symbol: gyrB
gene_biotype: protein_coding
description:
  DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: Calkr_0007
symbol: gyrA
gene_biotype: protein_coding
description:
  DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: Calkr_0014
symbol: macB
gene_biotype: protein_coding
description:
  ABC transporter related protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.


ensembl_gene_id: Calkr_0021
symbol: ADQ39609.1
gene_biotype: protein_coding
description:
  PFAM: regulator of chromosome condensation RCC1; KEGG: ate:Athe_0956 regulator of chromosome condensation RCC1.


ensembl_gene_id: Calkr_0040
symbol: ADQ39624.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0026 PilT protein domain protein; PFAM: PilT protein domain protein; SMART: Nucleotide binding protein PINc.


ensembl_gene_id: Calkr_0049
symbol: ADQ39627.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2627 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR.


ensembl_gene_id: Calkr_0050
symbol: ADQ39628.1
gene_biotype: protein_coding
description:
  Putative signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: csc:Csac_0511 putative signal transduction histidine kinase.


ensembl_gene_id: Calkr_0058
symbol: ADQ39636.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2620 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.


ensembl_gene_id: Calkr_0059
symbol: ADQ39637.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_0521 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.


ensembl_gene_id: Calkr_0060
symbol: ADQ39638.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_0522 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.


ensembl_gene_id: Calkr_0063
symbol: ADQ39640.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2611 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein.


ensembl_gene_id: Calkr_0069
symbol: ADQ39646.1
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ate:Athe_2606 thioredoxin-disulfide reductase.


ensembl_gene_id: Calkr_0072
symbol: ADQ39649.1
gene_biotype: protein_coding
description:
  Manually curated; TIGRFAM: regulatory protein, FmdB family; KEGG: ate:Athe_2603 regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB.


ensembl_gene_id: Calkr_0074
symbol: ADQ39651.1
gene_biotype: protein_coding
description:
  Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.


ensembl_gene_id: Calkr_0076
symbol: ADQ39653.1
gene_biotype: protein_coding
description:
  PFAM: PP-loop domain protein; KEGG: csc:Csac_0539 PP-loop domain-containing protein; Belongs to the TtcA family.


ensembl_gene_id: Calkr_0077
symbol: ADQ39654.1
gene_biotype: protein_coding
description:
  PFAM: integrase family protein; KEGG: ate:Athe_1029 integrase family protein; Belongs to the 'phage' integrase family.


ensembl_gene_id: Calkr_0079
symbol: ADQ39656.1
gene_biotype: protein_coding
description:
  Helix-turn-helix domain protein; KEGG: csc:Csac_2097 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.


ensembl_gene_id: Calkr_0086
symbol: ADQ39663.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_0575 FliA/WhiG family RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein.


ensembl_gene_id: Calkr_0088
symbol: ADQ39665.1
gene_biotype: protein_coding
description:
  Plasmid maintenance system antidote protein, XRE family; TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: dae:Dtox_1542 XRE family plasmid maintenance system antidote protein; SMART: helix-turn-helix domain protein.


ensembl_gene_id: Calkr_0089
symbol: ADQ39666.1
gene_biotype: protein_coding
description:
  PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: pth:PTH_2135 integrase; Belongs to the 'phage' integrase family.


ensembl_gene_id: Calkr_0091
symbol: ADQ39668.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0744 helix-turn-helix domain protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.


ensembl_gene_id: Calkr_0092
symbol: ADQ39669.1
gene_biotype: protein_coding
description:
  TIGRFAM: DNA binding domain protein, excisionase family; KEGG: aoe:Clos_1051 DNA binding domain-containing protein.


ensembl_gene_id: Calkr_0093
symbol: ADQ39670.1
gene_biotype: protein_coding
description:
  PFAM: DnaB domain protein helicase domain protein; KEGG: csc:Csac_2098 DnaB domain-containing protein.


ensembl_gene_id: Calkr_0095
symbol: ADQ39672.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; KEGG: csc:Csac_0553 helix-turn-helix domain-containing protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Calkr_0100
symbol: ADQ39677.1
gene_biotype: protein_coding
description:
  PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: csc:Csac_0411 cytochrome c biogenesis protein, transmembrane region.


ensembl_gene_id: Calkr_0109
symbol: ADQ39684.1
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; KEGG: csc:Csac_0418 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver.


ensembl_gene_id: Calkr_0110
symbol: ADQ39685.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_0419 integral membrane sensor signal transduction histidine kinase; PFAM: histidine kinase A domain protein; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase A domain protein; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein.


ensembl_gene_id: Calkr_0112
symbol: ADQ39687.1
gene_biotype: protein_coding
description:
  PFAM: nucleoside recognition domain protein; KEGG: ate:Athe_2584 nucleoside recognition domain protein.


ensembl_gene_id: Calkr_0113
symbol: ADQ39688.1
gene_biotype: protein_coding
description:
  PFAM: nucleoside recognition domain protein; KEGG: ate:Athe_2583 nucleoside recognition domain protein.


ensembl_gene_id: Calkr_0114
symbol: ADQ39689.1
gene_biotype: protein_coding
description:
  PFAM: cobalamin B12-binding domain protein; Methionine synthase B12-binding module cap domain protein; KEGG: ate:Athe_2582 methionine synthase.


ensembl_gene_id: Calkr_0116
symbol: ADQ39691.1
gene_biotype: protein_coding
description:
  PFAM: class II aldolase/adducin family protein; KEGG: ate:Athe_2580 class II aldolase/adducin family protein.


ensembl_gene_id: Calkr_0117
symbol: ADQ39692.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2579 alpha amylase catalytic region; PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein Ig domain protein region domain protein; SMART: alpha amylase catalytic sub domain.


ensembl_gene_id: Calkr_0118
symbol: ADQ39693.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ate:Athe_2578 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Calkr_0119
symbol: ADQ39694.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ate:Athe_2577 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Calkr_0120
symbol: ADQ39695.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2576 alpha-glucan phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35.


ensembl_gene_id: Calkr_0121
symbol: ADQ39696.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LacI family; KEGG: csc:Csac_0430 alanine racemase; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI.


ensembl_gene_id: Calkr_0122
symbol: ADQ39697.1
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: ate:Athe_2574 extracellular solute-binding protein family 1.


ensembl_gene_id: Calkr_0129
symbol: ADQ39701.1
gene_biotype: protein_coding
description:
  SMART: alpha amylase catalytic sub domain; KEGG: ate:Athe_0143 alpha amylase catalytic sub domain protein.


ensembl_gene_id: Calkr_0132
symbol: ADQ39704.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0146 transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR.


ensembl_gene_id: Calkr_0133
symbol: ADQ39705.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0147 1-phosphofructokinase; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.


ensembl_gene_id: Calkr_0134
symbol: ADQ39706.1
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate-protein phosphotransferase; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).


ensembl_gene_id: Calkr_0135
symbol: ADQ39707.1
gene_biotype: protein_coding
description:
  Cephalosporin-C deacetylase; KEGG: ate:Athe_0152 acetyl xylan esterase; PFAM: Acetyl xylan esterase.


ensembl_gene_id: Calkr_0142
symbol: ADQ39714.1
gene_biotype: protein_coding
description:
  Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: csc:Csac_2429 ferric uptake regulator family protein; Belongs to the Fur family.


ensembl_gene_id: Calkr_0143
symbol: ADQ39715.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0165 alpha amylase catalytic region; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.


ensembl_gene_id: Calkr_0144
symbol: plsY
gene_biotype: protein_coding
description:
  Protein of unknown function DUF205; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.


ensembl_gene_id: Calkr_0147
symbol: ADQ39719.1
gene_biotype: protein_coding
description:
  PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; KEGG: ate:Athe_0169 thiamine biosynthesis protein ThiH.


ensembl_gene_id: Calkr_0148
symbol: ADQ39720.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0170 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver.


ensembl_gene_id: Calkr_0150
symbol: rsmI
gene_biotype: protein_coding
description:
  Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.


ensembl_gene_id: Calkr_0151
symbol: ADQ39723.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_2420 AbrB family transcriptional regulator; TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain-containing protein.


ensembl_gene_id: Calkr_0153
symbol: ADQ39725.1
gene_biotype: protein_coding
description:
  KEGG: cpy:Cphy_2278 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI.


ensembl_gene_id: Calkr_0154
symbol: ADQ39726.1
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: ate:Athe_0174 extracellular solute-binding protein family 1.


ensembl_gene_id: Calkr_0155
symbol: ADQ39727.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2418 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Calkr_0156
symbol: ADQ39728.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2417 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Calkr_0159
symbol: ADQ39731.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ate:Athe_0179 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Calkr_0160
symbol: ADQ39732.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ate:Athe_0180 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Calkr_0161
symbol: ADQ39733.1
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: ate:Athe_0181 extracellular solute-binding protein family 1.


ensembl_gene_id: Calkr_0162
symbol: ADQ39734.1
gene_biotype: protein_coding
description:
  KEGG: dth:DICTH_0009 mannan endo-1,4-beta-mannosidase; PFAM: Carbohydrate binding family 6; Belongs to the glycosyl hydrolase 26 family.


ensembl_gene_id: Calkr_0163
symbol: ADQ39735.1
gene_biotype: protein_coding
description:
  Peptidase M23; KEGG: ate:Athe_0190 peptidase M23; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; G5 domain protein; SMART: Peptidoglycan-binding LysM.


ensembl_gene_id: Calkr_0164
symbol: ADQ39736.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_2648 IS605 family transposase OrfB; TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; transposase IS891/IS1136/IS1341 family.


ensembl_gene_id: Calkr_0165
symbol: queC
gene_biotype: protein_coding
description:
  exsB protein; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)).


ensembl_gene_id: Calkr_0166
symbol: ADQ39738.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0192 endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP.


ensembl_gene_id: Calkr_0169
symbol: ADQ39741.1
gene_biotype: protein_coding
description:
  PFAM: PP-loop domain protein; KEGG: ate:Athe_0195 PP-loop domain protein; Belongs to the TtcA family.


ensembl_gene_id: Calkr_0170
symbol: queE
gene_biotype: protein_coding
description:
  Radical SAM domain protein; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.


ensembl_gene_id: Calkr_0172
symbol: ADQ39744.1
gene_biotype: protein_coding
description:
  PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: ate:Athe_0199 2-hydroxyglutaryl-CoA dehydratase D-component.


ensembl_gene_id: Calkr_0173
symbol: ADQ39745.1
gene_biotype: protein_coding
description:
  TIGRFAM: CoA-substrate-specific enzyme activase; KEGG: ate:Athe_0200 CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; 2-hydroxyglutaryl-CoA dehydratase D-component.


ensembl_gene_id: Calkr_0174
symbol: ADQ39746.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_0399 BadM/Rrf2 family transcriptional regulator; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074.


ensembl_gene_id: Calkr_0175
symbol: ADQ39747.1
gene_biotype: protein_coding
description:
  TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; KEGG: csc:Csac_0400 carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane.


ensembl_gene_id: Calkr_0177
symbol: ADQ39749.1
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: csc:Csac_0402 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Calkr_0178
symbol: ADQ39750.1
gene_biotype: protein_coding
description:
  Regulatory protein MarR; KEGG: ate:Athe_0201 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.


ensembl_gene_id: Calkr_0179
symbol: ADQ39751.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0202 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.


ensembl_gene_id: Calkr_0180
symbol: ADQ39752.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0203 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.


ensembl_gene_id: Calkr_0183
symbol: ADQ39755.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0206 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer.


ensembl_gene_id: Calkr_0184
symbol: murA
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.


ensembl_gene_id: Calkr_0186
symbol: birA
gene_biotype: protein_coding
description:
  biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.


ensembl_gene_id: Calkr_0187
symbol: ADQ39759.1
gene_biotype: protein_coding
description:
  TIGRFAM: dihydropteroate synthase; KEGG: ate:Athe_0210 dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS.


ensembl_gene_id: Calkr_0189
symbol: ADQ39761.1
gene_biotype: protein_coding
description:
  TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; KEGG: ate:Athe_0212 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK.


ensembl_gene_id: Calkr_0190
symbol: ADQ39762.1
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ate:Athe_0213 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Calkr_0193
symbol: ADQ39765.1
gene_biotype: protein_coding
description:
  Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: ate:Athe_0216 phage shock protein A, PspA.


ensembl_gene_id: Calkr_0194
symbol: ADQ39766.1
gene_biotype: protein_coding
description:
  Protein serine/threonine phosphatase; PFAM: Stage II sporulation protein E; KEGG: ate:Athe_0217 protein serine/threonine phosphatase; SMART: protein phosphatase 2C domain protein.


ensembl_gene_id: Calkr_0195
symbol: ADQ39767.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0218 stage II sporulation protein D; TIGRFAM: stage II sporulation protein D; SpoIID/LytB domain protein; PFAM: Stage II sporulation protein D.


ensembl_gene_id: Calkr_0202
symbol: nadE
gene_biotype: protein_coding
description:
  NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.


ensembl_gene_id: Calkr_0211
symbol: ADQ39777.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: tex:Teth514_0147 LysR family transcriptional regulator.


ensembl_gene_id: Calkr_0212
symbol: ADQ39778.1
gene_biotype: protein_coding
description:
  PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tex:Teth514_0146 NADH:flavin oxidoreductase/NADH oxidase.


ensembl_gene_id: Calkr_0213
symbol: ADQ39779.1
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, AraC family; KEGG: csc:Csac_0124 response regulator receiver protein; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; Helix-turn-helix, AraC domain.


ensembl_gene_id: Calkr_0214
symbol: ADQ39780.1
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; KEGG: csc:Csac_0125 histidine kinase internal region; PFAM: histidine kinase internal region; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase HAMP region domain protein.


ensembl_gene_id: Calkr_0215
symbol: ADQ39781.1
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: csc:Csac_0126 extracellular solute-binding protein.


ensembl_gene_id: Calkr_0216
symbol: ADQ39782.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_0127 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Calkr_0217
symbol: ADQ39783.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_0128 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Calkr_0218
symbol: ADQ39784.1
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 sugar binding; KEGG: ate:Athe_0227 glycoside hydrolase family 2 sugar binding; Belongs to the glycosyl hydrolase 2 family.


ensembl_gene_id: Calkr_0223
symbol: ADQ39788.1
gene_biotype: protein_coding
description:
  Radical SAM domain protein; KEGG: pmo:Pmob_0677 hypothetical protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: Calkr_0226
symbol: ADQ39791.1
gene_biotype: protein_coding
description:
  Manually curated; PFAM: ABC transporter related; KEGG: cno:NT01CX_2434 ABC transporter, ATP-binding protein; SMART: AAA ATPase.


ensembl_gene_id: Calkr_0230
symbol: ADQ39795.1
gene_biotype: protein_coding
description:
  PFAM: Nucleotidyl transferase; transferase hexapeptide repeat containing protein; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; KEGG: ate:Athe_0233 nucleotidyl transferase.


ensembl_gene_id: Calkr_0231
symbol: ADQ39796.1
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 5; KEGG: csc:Csac_0137 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.


ensembl_gene_id: Calkr_0232
symbol: ADQ39797.1
gene_biotype: protein_coding
description:
  PFAM: VanZ family protein; CO dehydrogenase flavoprotein domain protein; KEGG: csc:Csac_0138 VanZ family protein.


ensembl_gene_id: Calkr_0238
symbol: ADQ39803.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0244 SpoIID/LytB domain protein; TIGRFAM: SpoIID/LytB domain protein; PFAM: Stage II sporulation protein D.


ensembl_gene_id: Calkr_0239
symbol: queA
gene_biotype: protein_coding
description:
  S-adenosylmethionine/tRNA-ribosyltransferase- isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).


ensembl_gene_id: Calkr_0245
symbol: ADQ39810.1
gene_biotype: protein_coding
description:
  KEGG: tjr:TherJR_1349 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein.


ensembl_gene_id: Calkr_0246
symbol: ADQ39811.1
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; KEGG: amt:Amet_3209 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver.


ensembl_gene_id: Calkr_0250
symbol: ADQ39815.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2706 transposase IS200-family protein; manually curated; PFAM: transposase IS200-family protein.


ensembl_gene_id: Calkr_0251
symbol: ADQ39816.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2321 transposase, IS605 OrfB family; TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB.


ensembl_gene_id: Calkr_0253
symbol: ADQ39818.1
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; KEGG: aoe:Clos_0943 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver.


ensembl_gene_id: Calkr_0254
symbol: ADQ39819.1
gene_biotype: protein_coding
description:
  KEGG: cbl:CLK_2842 sensory transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein.


ensembl_gene_id: Calkr_0256
symbol: ADQ39821.1
gene_biotype: protein_coding
description:
  PFAM: transport system permease protein; KEGG: csc:Csac_0174 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: Calkr_0261
symbol: ADQ39825.1
gene_biotype: protein_coding
description:
  PFAM: formylmethanofuran dehydrogenase subunit E region; KEGG: csc:Csac_0177 formylmethanofuran dehydrogenase, subunit E region.


ensembl_gene_id: Calkr_0263
symbol: cheB
gene_biotype: protein_coding
description:
  Response regulator receiver modulated CheB methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.


ensembl_gene_id: Calkr_0266
symbol: comB
gene_biotype: protein_coding
description:
  PFAM: 2-phosphosulfolactate phosphatase; KEGG: ate:Athe_0305 2-phosphosulfolactate phosphatase; Belongs to the ComB family.


ensembl_gene_id: Calkr_0268
symbol: metG
gene_biotype: protein_coding
description:
  methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.


ensembl_gene_id: Calkr_0269
symbol: ADQ39833.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0308 hydrolase, TatD family; TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease.


ensembl_gene_id: Calkr_0274
symbol: ADQ39838.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0314 heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; cadmium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase.


ensembl_gene_id: Calkr_0275
symbol: ADQ39839.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0315 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR.


ensembl_gene_id: Calkr_0277
symbol: ADQ39841.1
gene_biotype: protein_coding
description:
  HAD-superfamily hydrolase, subfamily IIA; Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro; Belongs to the HAD-like hydrolase superfamily. NagD family.


ensembl_gene_id: Calkr_0278
symbol: ADQ39842.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF159; KEGG: ate:Athe_0318 protein of unknown function DUF159; Belongs to the SOS response-associated peptidase family.


ensembl_gene_id: Calkr_0281
symbol: ADQ39845.1
gene_biotype: protein_coding
description:
  Protein of unknown function UPF0052 and CofD; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.


ensembl_gene_id: Calkr_0283
symbol: ADQ39847.1
gene_biotype: protein_coding
description:
  Phosphotransferase system, phosphocarrier protein HPr; KEGG: ate:Athe_0323 phosphocarrier, HPr family; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr.


ensembl_gene_id: Calkr_0285
symbol: ADQ39849.1
gene_biotype: protein_coding
description:
  PFAM: homocysteine S-methyltransferase; methylenetetrahydrofolate reductase; KEGG: ate:Athe_0325 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein.


ensembl_gene_id: Calkr_0286
symbol: ADQ39850.1
gene_biotype: protein_coding
description:
  TIGRFAM: ABC-type bacteriocin transporter; PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; KEGG: ate:Athe_0327 ABC-type bacteriocin transporter; SMART: AAA ATPase.


ensembl_gene_id: Calkr_0287
symbol: ADQ39851.1
gene_biotype: protein_coding
description:
  PFAM: secretion protein HlyD family protein; KEGG: ate:Athe_0252 secretion protein HlyD family protein.


ensembl_gene_id: Calkr_0297
symbol: ADQ39860.1
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: rde:RD1_2369 spermidine/putrescine ABC transporter, periplasmic binding protein, putative.


ensembl_gene_id: Calkr_0299
symbol: ADQ39862.1
gene_biotype: protein_coding
description:
  PFAM: Lanthionine synthetase C family protein; KEGG: cbe:Cbei_4586 lantibiotic modifying -like protein.


ensembl_gene_id: Calkr_0307
symbol: ADQ39868.1
gene_biotype: protein_coding
description:
  TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: csc:Csac_1169 anaerobic ribonucleoside-triphosphate reductase activating protein; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: Calkr_0309
symbol: ADQ39870.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LacI family; KEGG: csc:Csac_1171 alanine racemase; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI.


ensembl_gene_id: Calkr_0310
symbol: ADQ39871.1
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: ate:Athe_0344 oxidoreductase domain protein.


ensembl_gene_id: Calkr_0311
symbol: ADQ39872.1
gene_biotype: protein_coding
description:
  PFAM: Xylose isomerase domain-containing protein TIM barrel; AP endonuclease 2 domain protein; KEGG: ate:Athe_0345 xylose isomerase domain protein TIM barrel.


ensembl_gene_id: Calkr_0312
symbol: ADQ39873.1
gene_biotype: protein_coding
description:
  PFAM: AMMECR1 domain protein; Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: ate:Athe_0359 hypothetical protein.


ensembl_gene_id: Calkr_0313
symbol: ADQ39874.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0360 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: Calkr_0314
symbol: dacA
gene_biotype: protein_coding
description:
  Protein of unknown function DUF147; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.


ensembl_gene_id: Calkr_0316
symbol: uvrC
gene_biotype: protein_coding
description:
  Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.


ensembl_gene_id: Calkr_0317
symbol: hprK
gene_biotype: protein_coding
description:
  HPr kinase; Catalyzes the ATP- as well as the pyrophosphate-dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK/P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P-Ser-HPr). The two antagonistic activities of HprK/P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (gluc [...]


ensembl_gene_id: Calkr_0321
symbol: ADQ39881.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0368 thiamine biosynthesis protein ThiS; TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein.


ensembl_gene_id: Calkr_0322
symbol: ADQ39882.1
gene_biotype: protein_coding
description:
  Thiazole biosynthesis family protein; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.


ensembl_gene_id: Calkr_0323
symbol: ADQ39883.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0370 thiamine biosynthesis protein ThiH; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: Calkr_0324
symbol: ADQ39884.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0371 thiamine biosynthesis protein ThiF; TIGRFAM: thiamine biosynthesis protein ThiF; PFAM: UBA/THIF-type NAD/FAD binding protein.


ensembl_gene_id: Calkr_0325
symbol: thiE
gene_biotype: protein_coding
description:
  Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.


ensembl_gene_id: Calkr_0326
symbol: ADQ39886.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0373 thiamine biosynthesis protein ThiC; TIGRFAM: thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC.


ensembl_gene_id: Calkr_0327
symbol: ADQ39887.1
gene_biotype: protein_coding
description:
  TIGRFAM: phosphomethylpyrimidine kinase; KEGG: ate:Athe_0381 phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1.


ensembl_gene_id: Calkr_0328
symbol: tgt
gene_biotype: protein_coding
description:
  Queuine tRNA-ribosyltransferase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form t [...]


ensembl_gene_id: Calkr_0335
symbol: ADQ39895.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0391 preprotein translocase, YajC subunit; TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein.


ensembl_gene_id: Calkr_0336
symbol: rsmA
gene_biotype: protein_coding
description:
  Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.


ensembl_gene_id: Calkr_0337
symbol: pckG
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate carboxykinase (GTP); Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle; Belongs to the phosphoenolpyruvate carboxykinase [GTP] family.


ensembl_gene_id: Calkr_0339
symbol: ADQ39899.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0395 mannose-1-phosphate guanylyltransferase (GDP); PFAM: Nucleotidyl transferase; mannose-6-phosphate isomerase type II.


ensembl_gene_id: Calkr_0340
symbol: ADQ39900.1
gene_biotype: protein_coding
description:
  Sporulation protein YunB; KEGG: ate:Athe_0396 hypothetical protein; TIGRFAM: sporulation protein YunB; PFAM: Sporulation protein YunB-like.


ensembl_gene_id: Calkr_0342
symbol: ADQ39901.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0397 beta-phosphoglucomutase family hydrolase; TIGRFAM: beta-phosphoglucomutase family hydrolase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase.


ensembl_gene_id: Calkr_0343
symbol: ADQ39902.1
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: ate:Athe_0398 kojibiose phosphorylase.


ensembl_gene_id: Calkr_0344
symbol: ADQ39903.1
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; EppA_BapA family protein; KEGG: ate:Athe_0399 extracellular solute-binding protein family 1.


ensembl_gene_id: Calkr_0345
symbol: ADQ39904.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ate:Athe_0400 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Calkr_0346
symbol: ADQ39905.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ate:Athe_0401 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Calkr_0347
symbol: ADQ39906.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0402 transcriptional regulator, LacI family; PFAM: periplasmic binding protein/LacI transcriptional regulator; helix-turn-helix domain protein; SMART: regulatory protein LacI.


ensembl_gene_id: Calkr_0348
symbol: ADQ39907.1
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: ate:Athe_0403 kojibiose phosphorylase.


ensembl_gene_id: Calkr_0353
symbol: ADQ39910.1
gene_biotype: protein_coding
description:
  KEGG: tte:TTE0715 transposase; TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; transposase IS891/IS1136/IS1341 family.


ensembl_gene_id: Calkr_0361
symbol: ADQ39915.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2218 glutamine amidotransferase of anthranilate synthase; TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I.


ensembl_gene_id: Calkr_0362
symbol: ADQ39916.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2217 anthranilate synthase; PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein.


ensembl_gene_id: Calkr_0372
symbol: ADQ39925.1
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: ate:Athe_2206 alcohol dehydrogenase GroES domain protein.


ensembl_gene_id: Calkr_0374
symbol: ADQ39927.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2204 transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI.


ensembl_gene_id: Calkr_0376
symbol: rpmB
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2199 ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.


ensembl_gene_id: Calkr_0377
symbol: bpsA
gene_biotype: protein_coding
description:
  Protein of unknown function DUF43; Involved in the biosynthesis of branched-chain polyamines, which support the growth of thermophiles under high-temperature conditions. Catalyzes the sequential condensation of spermidine with the aminopropyl groups of decarboxylated S-adenosylmethionines to produce N(4)-bis(aminopropyl)spermidine via N(4)-aminopropylspermidine.


ensembl_gene_id: Calkr_0379
symbol: ADQ39932.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2196 GCN5-related N-acetyltransferase; manually curated; PFAM: GCN5-related N-acetyltransferase.


ensembl_gene_id: Calkr_0386
symbol: ADQ39938.1
gene_biotype: protein_coding
description:
  PFAM: DNA polymerase beta domain protein region; KEGG: ate:Athe_2195 DNA polymerase beta domain protein region.


ensembl_gene_id: Calkr_0388
symbol: ADQ39940.1
gene_biotype: protein_coding
description:
  TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; KEGG: ate:Athe_2193 Mg chelatase, subunit ChlI; SMART: AAA ATPase.


ensembl_gene_id: Calkr_0392
symbol: ADQ39944.1
gene_biotype: protein_coding
description:
  Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: ate:Athe_2189 ferric uptake regulator, Fur family.


ensembl_gene_id: Calkr_0393
symbol: ADQ39945.1
gene_biotype: protein_coding
description:
  Regulatory protein ArsR; KEGG: ate:Athe_2186 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR.


ensembl_gene_id: Calkr_0394
symbol: ADQ39946.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2185 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: Calkr_0396
symbol: rtcB
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function UPF0027; KEGG: ate:Athe_2183 protein of unknown function UPF0027; Belongs to the RtcB family.


ensembl_gene_id: Calkr_0397
symbol: ADQ39948.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2182 DNA protecting protein DprA; TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein.


ensembl_gene_id: Calkr_0398
symbol: topA
gene_biotype: protein_coding
description:
  DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]


ensembl_gene_id: Calkr_0399
symbol: trmFO
gene_biotype: protein_coding
description:
  Gid protein; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily.


ensembl_gene_id: Calkr_0400
symbol: hslV
gene_biotype: protein_coding
description:
  20S proteasome A and B subunits; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.


ensembl_gene_id: Calkr_0401
symbol: hslU
gene_biotype: protein_coding
description:
  Heat shock protein HslVU, ATPase subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis.


ensembl_gene_id: Calkr_0402
symbol: codY
gene_biotype: protein_coding
description:
  GTP-sensing pleiotropic transcriptional repressor CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; Belongs to the CodY family.


ensembl_gene_id: Calkr_0403
symbol: ADQ39954.1
gene_biotype: protein_coding
description:
  Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.


ensembl_gene_id: Calkr_0404
symbol: ADQ39955.1
gene_biotype: protein_coding
description:
  Flagellar basal-body rod protein FlgC; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.


ensembl_gene_id: Calkr_0405
symbol: fliE
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2174 flagellar hook-basal body complex subunit FliE; TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE.


ensembl_gene_id: Calkr_0406
symbol: ADQ39957.1
gene_biotype: protein_coding
description:
  Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.


ensembl_gene_id: Calkr_0407
symbol: ADQ39958.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2172 flagellar motor switch protein G; TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; MgtE intracellular region.


ensembl_gene_id: Calkr_0408
symbol: ADQ39959.1
gene_biotype: protein_coding
description:
  PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: ate:Athe_2171 H+-transporting two-sector ATPase, E subunit.


ensembl_gene_id: Calkr_0409
symbol: ADQ39960.1
gene_biotype: protein_coding
description:
  TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: ate:Athe_2170 ATPase, FliI/YscN family; SMART: AAA ATPase.


ensembl_gene_id: Calkr_0412
symbol: ADQ39963.1
gene_biotype: protein_coding
description:
  PFAM: Flagellar hook-length control protein-like, C-terminal domain; KEGG: ate:Athe_2167 flagellar hook-length control protein.


ensembl_gene_id: Calkr_0415
symbol: ADQ39966.1
gene_biotype: protein_coding
description:
  Fagellar hook-basal body protein; KEGG: ate:Athe_2164 protein of unknown function DUF1078 domain protein; TIGRFAM: fagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellar basal body FlaE domain protein.


ensembl_gene_id: Calkr_0417
symbol: ADQ39968.1
gene_biotype: protein_coding
description:
  Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.


ensembl_gene_id: Calkr_0418
symbol: ADQ39969.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2161 flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein.


ensembl_gene_id: Calkr_0419
symbol: ADQ39970.1
gene_biotype: protein_coding
description:
  CheC, inhibitor of MCP methylation / FliN fusion protein; KEGG: ate:Athe_2160 flagellar motor switch protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein.


ensembl_gene_id: Calkr_0420
symbol: ADQ39971.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2159 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver.


ensembl_gene_id: Calkr_0422
symbol: fliP
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.


ensembl_gene_id: Calkr_0423
symbol: fliQ
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.


ensembl_gene_id: Calkr_0424
symbol: ADQ39975.1
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.


ensembl_gene_id: Calkr_0425
symbol: flhB
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.


ensembl_gene_id: Calkr_0426
symbol: flhA
gene_biotype: protein_coding
description:
  Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.


ensembl_gene_id: Calkr_0427
symbol: ADQ39978.1
gene_biotype: protein_coding
description:
  TIGRFAM: flagellar biosynthetic protein FlhF; PFAM: GTP-binding signal recognition particle SRP54 G- domain; KEGG: ate:Athe_2152 GTP-binding signal recognition particle SRP54 G-domain protein; SMART: AAA ATPase.


ensembl_gene_id: Calkr_0430
symbol: ADQ39981.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2149 CheA signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; P2 response regulator binding domain protein; Hpt domain protein; Signal transducing histidine kinase homodimeric; CheW domain protein; SMART: CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein.


ensembl_gene_id: Calkr_0433
symbol: cheD
gene_biotype: protein_coding
description:
  CheD; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.


ensembl_gene_id: Calkr_0435
symbol: ADQ39986.1
gene_biotype: protein_coding
description:
  RNA polymerase, sigma 28 subunit, FliA/WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: Calkr_0441
symbol: ADQ39991.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2139 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Calkr_0442
symbol: groS
gene_biotype: protein_coding
description:
  Chaperonin Cpn10; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.


ensembl_gene_id: Calkr_0443
symbol: groL
gene_biotype: protein_coding
description:
  Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.


ensembl_gene_id: Calkr_0446
symbol: ADQ39995.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2136 Cof-like hydrolase; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3.


ensembl_gene_id: Calkr_0449
symbol: ADQ39998.1
gene_biotype: protein_coding
description:
  RNA methyltransferase, TrmH family, group 2; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.


ensembl_gene_id: Calkr_0451
symbol: ADQ40000.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2131 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: Calkr_0453
symbol: ADQ40002.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2129 ribonuclease, Rne/Rng family; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; RNA binding S1 domain protein.


ensembl_gene_id: Calkr_0454
symbol: efp
gene_biotype: protein_coding
description:
  Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.


ensembl_gene_id: Calkr_0456
symbol: ADQ40005.1
gene_biotype: protein_coding
description:
  Serine--glyoxylate transaminase; KEGG: ate:Athe_2126 aminotransferase class V; PFAM: aminotransferase class V.


ensembl_gene_id: Calkr_0457
symbol: ADQ40006.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2125 D-3-phosphoglycerate dehydrogenase; TIGRFAM: D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; amino acid-binding ACT domain protein.


ensembl_gene_id: Calkr_0459
symbol: ADQ40008.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2123 Cof-like hydrolase; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3.


ensembl_gene_id: Calkr_0460
symbol: speH
gene_biotype: protein_coding
description:
  S-adenosylmethionine decarboxylase proenzyme; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine; Belongs to the prokaryotic AdoMetDC family. Type 1 subfamily.


ensembl_gene_id: Calkr_0461
symbol: ADQ40010.1
gene_biotype: protein_coding
description:
  PFAM: filamentation induced by cAMP protein Fic; KEGG: swo:Swol_0160 filamentation induced by cAMP protein Fic.


ensembl_gene_id: Calkr_0463
symbol: ADQ40012.1
gene_biotype: protein_coding
description:
  PFAM: amino acid-binding ACT domain protein; KEGG: csc:Csac_1313 hypothetical protein; Belongs to the UPF0237 family.


ensembl_gene_id: Calkr_0465
symbol: dapF
gene_biotype: protein_coding
description:
  Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.


ensembl_gene_id: Calkr_0468
symbol: ADQ40017.1
gene_biotype: protein_coding
description:
  Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: cce:Ccel_1301 transcriptional repressor, CopY family.


ensembl_gene_id: Calkr_0471
symbol: ADQ40020.1
gene_biotype: protein_coding
description:
  Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.


ensembl_gene_id: Calkr_0472
symbol: ADQ40021.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2109 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain.


ensembl_gene_id: Calkr_0473
symbol: rnr
gene_biotype: protein_coding
description:
  Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.


ensembl_gene_id: Calkr_0474
symbol: dnaX
gene_biotype: protein_coding
description:
  DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.


ensembl_gene_id: Calkr_0476
symbol: hpf
gene_biotype: protein_coding
description:
  Sigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.


ensembl_gene_id: Calkr_0477
symbol: secA
gene_biotype: protein_coding
description:
  Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family.


ensembl_gene_id: Calkr_0478
symbol: prfB
gene_biotype: protein_coding
description:
  Hypothetical protein; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.


ensembl_gene_id: Calkr_0480
symbol: ADQ40029.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_1328 response regulator receiver sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein.


ensembl_gene_id: Calkr_0481
symbol: ADQ40030.1
gene_biotype: protein_coding
description:
  Putative signal transduction protein; KEGG: csc:Csac_1329 response regulator receiver protein; PFAM: Metal-dependent hydrolase HDOD; response regulator receiver; SMART: response regulator receiver.


ensembl_gene_id: Calkr_0482
symbol: ADQ40031.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_1330 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver.


ensembl_gene_id: Calkr_0483
symbol: leuC
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.


ensembl_gene_id: Calkr_0484
symbol: leuD
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 2 subfamily.


ensembl_gene_id: Calkr_0485
symbol: leuB
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.


ensembl_gene_id: Calkr_0488
symbol: ADQ40037.1
gene_biotype: protein_coding
description:
  Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.


ensembl_gene_id: Calkr_0489
symbol: rpsR
gene_biotype: protein_coding
description:
  Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.


ensembl_gene_id: Calkr_0492
symbol: ADQ40040.1
gene_biotype: protein_coding
description:
  TIGRFAM: glycerate kinase; KEGG: ate:Athe_2071 glycerate kinase; PFAM: glycerate kinase; Belongs to the glycerate kinase type-1 family.


ensembl_gene_id: Calkr_0493
symbol: rplM
gene_biotype: protein_coding
description:
  Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.


ensembl_gene_id: Calkr_0494
symbol: rpsI
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein S9; KEGG: csc:Csac_1343 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.


ensembl_gene_id: Calkr_0496
symbol: ADQ40044.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2068 ammonium transporter; TIGRFAM: ammonium transporter; PFAM: ammonium transporter.


ensembl_gene_id: Calkr_0499
symbol: radA
gene_biotype: protein_coding
description:
  DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.


ensembl_gene_id: Calkr_0502
symbol: ADQ40050.1
gene_biotype: protein_coding
description:
  Polysaccharide pyruvyl transferase CsaB; Catalyzes the conversion of GlcNAc-PP-undecaprenol into ManNAc-GlcNAc-PP-undecaprenol, the first committed lipid intermediate in the de novo synthesis of teichoic acid.


ensembl_gene_id: Calkr_0503
symbol: ADQ40051.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function DUF2179; protein of unknown function DUF161; KEGG: ate:Athe_2061 protein of unknown function DUF161.


ensembl_gene_id: Calkr_0505
symbol: ADQ40053.1
gene_biotype: protein_coding
description:
  PFAM: Transketolase central region; Transketolase domain-containing protein; KEGG: csc:Csac_1352 transketolase, central region.


ensembl_gene_id: Calkr_0506
symbol: ADQ40054.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2058 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Calkr_0507
symbol: ADQ40055.1
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 31; KEGG: ate:Athe_2057 alpha-xylosidase YicI; Belongs to the glycosyl hydrolase 31 family.


ensembl_gene_id: Calkr_0508
symbol: ADQ40056.1
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; KEGG: ate:Athe_2056 putative sensor with HAMP domain; PFAM: histidine kinase internal region; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein.


ensembl_gene_id: Calkr_0509
symbol: ADQ40057.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2055 two component transcriptional regulator, AraC family; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; response regulator receiver.


ensembl_gene_id: Calkr_0511
symbol: ADQ40059.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ate:Athe_2054 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Calkr_0512
symbol: ADQ40060.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ate:Athe_2053 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Calkr_0513
symbol: ADQ40061.1
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: ate:Athe_2052 extracellular solute-binding protein family 1.


ensembl_gene_id: Calkr_0515
symbol: ADQ40063.1
gene_biotype: protein_coding
description:
  PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: ate:Athe_2050 Orn/Lys/Arg decarboxylase major region.


ensembl_gene_id: Calkr_0516
symbol: mrnC
gene_biotype: protein_coding
description:
  Ribonuclease III; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family.


ensembl_gene_id: Calkr_0518
symbol: fabZ
gene_biotype: protein_coding
description:
  Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs.


ensembl_gene_id: Calkr_0521
symbol: thyX
gene_biotype: protein_coding
description:
  Thymidylate synthase, flavin-dependent; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant.


ensembl_gene_id: Calkr_0522
symbol: ADQ40070.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2043 RNA methyltransferase, TrmH family, group 3; TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: Calkr_0524
symbol: ADQ40072.1
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: ate:Athe_2041 RNA polymerase factor sigma-70; TIGRFAM: RNA polymerase sigma-H factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2.


ensembl_gene_id: Calkr_0525
symbol: ADQ40073.1
gene_biotype: protein_coding
description:
  PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; KEGG: ate:Athe_2040 phosphomannomutase.


ensembl_gene_id: Calkr_0531
symbol: ADQ40079.1
gene_biotype: protein_coding
description:
  PFAM: ferredoxin-dependent glutamate synthase; KEGG: ate:Athe_2034 ferredoxin-dependent glutamate synthase.


ensembl_gene_id: Calkr_0536
symbol: ADQ40084.1
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ate:Athe_0530 diguanylate cyclase; SMART: GGDEF domain containing protein.


ensembl_gene_id: Calkr_0539
symbol: ADQ40087.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0533 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; Rhodanese domain protein; SMART: Rhodanese domain protein.


ensembl_gene_id: Calkr_0541
symbol: ADQ40089.1
gene_biotype: protein_coding
description:
  PFAM: 3D domain-containing protein; G5 domain protein; protein of unknown function DUF348; KEGG: ate:Athe_0535 3D domain protein.


ensembl_gene_id: Calkr_0544
symbol: ADQ40092.1
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: ate:Athe_0537 alcohol dehydrogenase GroES domain protein.


ensembl_gene_id: Calkr_0545
symbol: ADQ40093.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0538 signal transduction histidine kinase regulating citrate/malate metabolism; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein.


ensembl_gene_id: Calkr_0548
symbol: ADQ40096.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0541 spore coat protein, CotS family; TIGRFAM: spore coat protein, CotS family; PFAM: aminoglycoside phosphotransferase.


ensembl_gene_id: Calkr_0550
symbol: ADQ40098.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0543 spore coat protein, CotS family; TIGRFAM: spore coat protein, CotS family; PFAM: aminoglycoside phosphotransferase.


ensembl_gene_id: Calkr_0551
symbol: coaX
gene_biotype: protein_coding
description:
  Putative transcriptional acitvator, Baf family; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.


ensembl_gene_id: Calkr_0552
symbol: ADQ40100.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF74; KEGG: ate:Athe_0545 protein of unknown function DUF74; Belongs to the UPF0145 family.


ensembl_gene_id: Calkr_0555
symbol: ADQ40103.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0548 anaerobic ribonucleoside triphosphate reductase; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; PFAM: ATP-cone domain protein.


ensembl_gene_id: Calkr_0562
symbol: ADQ40108.1
gene_biotype: protein_coding
description:
  PFAM: ATP-binding region ATPase domain protein; KEGG: ate:Athe_2394 putative anti-sigma regulatory factor, serine/threonine protein kinase.


ensembl_gene_id: Calkr_0566
symbol: ADQ40111.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0612 HhH-GPD family protein; PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein.


ensembl_gene_id: Calkr_0568
symbol: ADQ40113.1
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: ate:Athe_0614 extracellular solute-binding protein family 1.


ensembl_gene_id: Calkr_0569
symbol: ADQ40114.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_0693 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Calkr_0570
symbol: ADQ40115.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ate:Athe_0616 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Calkr_0572
symbol: ADQ40117.1
gene_biotype: protein_coding
description:
  Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; Carbohydrate-binding CenC domain protein; KEGG: ate:Athe_0618 endo-1,4-beta-xylanase; SMART: glycoside hydrolase family 10.


ensembl_gene_id: Calkr_0573
symbol: ADQ40118.1
gene_biotype: protein_coding
description:
  TIGRFAM: bifunctional phosphoglucose/phosphomannose isomerase; KEGG: ate:Athe_0619 bifunctional phosphoglucose/phosphomannose isomerase; PFAM: Bifunctional glucose-6-phosphate/mannose-6-phosphate isomerase-like; sugar isomerase (SIS).


ensembl_gene_id: Calkr_0574
symbol: ADQ40119.1
gene_biotype: protein_coding
description:
  PHP domain protein; KEGG: ate:Athe_0620 putative hydrolase; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein.


ensembl_gene_id: Calkr_0575
symbol: ADQ40120.1
gene_biotype: protein_coding
description:
  TIGRFAM: fructose-1,6-bisphosphate aldolase, class II; ketose-bisphosphate aldolase; KEGG: ate:Athe_0621 fructose-1,6-bisphosphate aldolase, class II; PFAM: ketose-bisphosphate aldolase class-II.


ensembl_gene_id: Calkr_0580
symbol: secD
gene_biotype: protein_coding
description:
  Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: Calkr_0581
symbol: secF
gene_biotype: protein_coding
description:
  Protein-export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: Calkr_0582
symbol: rnj
gene_biotype: protein_coding
description:
  RNA-metabolising metallo-beta-lactamase; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.


ensembl_gene_id: Calkr_0583
symbol: ADQ40128.1
gene_biotype: protein_coding
description:
  Sporulation protein, YlmC/YmxH family; KEGG: csc:Csac_1196 PRC-barrel domain-containing protein; TIGRFAM: sporulation protein, YlmC/YmxH family; PFAM: PRC-barrel domain protein.


ensembl_gene_id: Calkr_0584
symbol: ADQ40129.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_1318 resolvase domain-containing protein; PFAM: Resolvase domain; regulatory protein MerR; SMART: regulatory protein MerR.


ensembl_gene_id: Calkr_0585
symbol: ADQ40130.1
gene_biotype: protein_coding
description:
  Transposase; KEGG: ate:Athe_0076 transposase; TIGRFAM: transposase; transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB.


ensembl_gene_id: Calkr_0586
symbol: ADQ40131.1
gene_biotype: protein_coding
description:
  PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: csc:Csac_1197 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.


ensembl_gene_id: Calkr_0590
symbol: ADQ40135.1
gene_biotype: protein_coding
description:
  TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; KEGG: ate:Athe_0632 sugar-phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase.


ensembl_gene_id: Calkr_0591
symbol: upp
gene_biotype: protein_coding
description:
  Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.


ensembl_gene_id: Calkr_0593
symbol: glmU
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine pyrophosphorylase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain.


ensembl_gene_id: Calkr_0594
symbol: prs
gene_biotype: protein_coding
description:
  Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.


ensembl_gene_id: Calkr_0595
symbol: pth
gene_biotype: protein_coding
description:
  peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.


ensembl_gene_id: Calkr_0596
symbol: mfd
gene_biotype: protein_coding
description:
  Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.


ensembl_gene_id: Calkr_0597
symbol: ADQ40142.1
gene_biotype: protein_coding
description:
  PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: ate:Athe_0639 PpiC-type peptidyl-prolyl cis-trans isomerase.


ensembl_gene_id: Calkr_0598
symbol: tilS
gene_biotype: protein_coding
description:
  tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.


ensembl_gene_id: Calkr_0599
symbol: ADQ40144.1
gene_biotype: protein_coding
description:
  TIGRFAM: hypoxanthine phosphoribosyltransferase; KEGG: ate:Athe_0641 hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.


ensembl_gene_id: Calkr_0600
symbol: ftsH
gene_biotype: protein_coding
description:
  ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family.  In the central section; belongs to the AAA ATPase family.


ensembl_gene_id: Calkr_0601
symbol: ADQ40146.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_1211 glutamine synthetase, type I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp.


ensembl_gene_id: Calkr_0602
symbol: ADQ40147.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0644 glutamate synthase (NADPH), homotetrameric; TIGRFAM: glutamate synthase (NADPH), homotetrameric; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Calkr_0603
symbol: ADQ40148.1
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; KEGG: ate:Athe_0645 oxidoreductase FAD/NAD(P)-binding domain protein.


ensembl_gene_id: Calkr_0605
symbol: ADQ40150.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0647 MazG family protein; TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase.


ensembl_gene_id: Calkr_0606
symbol: ADQ40151.1
gene_biotype: protein_coding
description:
  Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.


ensembl_gene_id: Calkr_0607
symbol: ADQ40152.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0649 RNA-binding S4 domain protein; PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein.


ensembl_gene_id: Calkr_0612
symbol: rex
gene_biotype: protein_coding
description:
  CoA-binding domain protein; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.


ensembl_gene_id: Calkr_0613
symbol: ADQ40158.1
gene_biotype: protein_coding
description:
  TIGRFAM: threonine synthase; KEGG: ate:Athe_0655 threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit.


ensembl_gene_id: Calkr_0614
symbol: ADQ40159.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0656 MgtE intracellular region; PFAM: MgtE intracellular region; CBS domain containing protein; SMART: CBS domain containing protein.


ensembl_gene_id: Calkr_0615
symbol: ADQ40160.1
gene_biotype: protein_coding
description:
  PFAM: natural resistance-associated macrophage protein; KEGG: ate:Athe_0657 natural resistance-associated macrophage protein.


ensembl_gene_id: Calkr_0617
symbol: ADQ40161.1
gene_biotype: protein_coding
description:
  PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: cac:CA_C0771 cobalt transport protein CbiM.


ensembl_gene_id: Calkr_0621
symbol: ADQ40165.1
gene_biotype: protein_coding
description:
  PFAM: Quinolinate phosphoribosyl transferase; KEGG: csc:Csac_2681 nicotinate phosphoribosyltransferase; Belongs to the NAPRTase family.


ensembl_gene_id: Calkr_0624
symbol: ADQ40168.1
gene_biotype: protein_coding
description:
  PFAM: DNA methylase N-4/N-6 domain protein; KEGG: tit:Thit_1349 DNA methylase N-4/N-6 domain protein.


ensembl_gene_id: Calkr_0629
symbol: ADQ40172.1
gene_biotype: protein_coding
description:
  KEGG: pth:PTH_0408 HD superfamily phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region.


ensembl_gene_id: Calkr_0632
symbol: ADQ40173.1
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: ate:Athe_0864 putative transcriptional regulator.


ensembl_gene_id: Calkr_0633
symbol: ADQ40174.1
gene_biotype: protein_coding
description:
  PFAM: restriction modification system DNA specificity domain; KEGG: chy:CHY_0831 putative type I restriction-modification system, S subunit.


ensembl_gene_id: Calkr_0640
symbol: serS
gene_biotype: protein_coding
description:
  seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).


ensembl_gene_id: Calkr_0642
symbol: ADQ40182.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0874 pyruvate/ketoisovalerate oxidoreductase, gamma subunit; TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit; PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain.


ensembl_gene_id: Calkr_0643
symbol: ADQ40183.1
gene_biotype: protein_coding
description:
  TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit; KEGG: ate:Athe_0875 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit.


ensembl_gene_id: Calkr_0644
symbol: ADQ40184.1
gene_biotype: protein_coding
description:
  PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: ate:Athe_0876 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.


ensembl_gene_id: Calkr_0645
symbol: ADQ40185.1
gene_biotype: protein_coding
description:
  PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; KEGG: csc:Csac_1461 thiamine pyrophosphate binding domain-containing protein.


ensembl_gene_id: Calkr_0646
symbol: ADQ40186.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0878 prephenate dehydratase; PFAM: prephenate dehydratase; amino acid-binding ACT domain protein.


ensembl_gene_id: Calkr_0648
symbol: ADQ40188.1
gene_biotype: protein_coding
description:
  Diguanylate cyclase and phosphoesterase; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family.


ensembl_gene_id: Calkr_0650
symbol: ADQ40190.1
gene_biotype: protein_coding
description:
  Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.


ensembl_gene_id: Calkr_0651
symbol: ahcY
gene_biotype: protein_coding
description:
  Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.


ensembl_gene_id: Calkr_0652
symbol: mtaD
gene_biotype: protein_coding
description:
  Amidohydrolase; Catalyzes the deamination of 5-methylthioadenosine and S- adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine. Belongs to the metallo-dependent hydrolases superfamily. MTA/SAH deaminase family.


ensembl_gene_id: Calkr_0653
symbol: murJ
gene_biotype: protein_coding
description:
  Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.


ensembl_gene_id: Calkr_0654
symbol: tyrS
gene_biotype: protein_coding
description:
  tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily.


ensembl_gene_id: Calkr_0670
symbol: ADQ40206.1
gene_biotype: protein_coding
description:
  PFAM: integrase family protein; KEGG: ate:Athe_2026 integrase family protein; Belongs to the 'phage' integrase family.


ensembl_gene_id: Calkr_0683
symbol: ADQ40218.1
gene_biotype: protein_coding
description:
  Transcriptional modulator of MazE/toxin, MazF; Toxic component of a type II toxin-antitoxin (TA) system.


ensembl_gene_id: Calkr_0684
symbol: ADQ40219.1
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: lsp:Bsph_4059 GabA permease (4-amino butyrate transport carrier) (gamma-aminobutyrate permease).


ensembl_gene_id: Calkr_0685
symbol: ADQ40220.1
gene_biotype: protein_coding
description:
  PFAM: Uncharacterised protein family UPF0150; KEGG: ate:Athe_2006 protein of unknown function UPF0150.


ensembl_gene_id: Calkr_0700
symbol: ADQ40232.1
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: tet:TTHERM_00216000 Guanylate-binding protein, N-terminal domain containing protein.


ensembl_gene_id: Calkr_0702
symbol: ADQ40234.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_0303 AbrB family transcriptional regulator; TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain-containing protein.


ensembl_gene_id: Calkr_0708
symbol: ADQ40237.1
gene_biotype: protein_coding
description:
  Helicase domain protein; KEGG: pth:PTH_2441 DNA/RNA helicase; PFAM: helicase domain protein; SNF2-related protein; SMART: helicase domain protein; DEAD-like helicase.


ensembl_gene_id: Calkr_0709
symbol: ADQ40238.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1156; DNA methylase N-4/N-6 domain protein; KEGG: pth:PTH_0860 adenine-specific DNA methylase.


ensembl_gene_id: Calkr_0716
symbol: ADQ40243.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1988 transcriptional regulator, AbrB family; TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain-containing protein.


ensembl_gene_id: Calkr_0718
symbol: ADQ40245.1
gene_biotype: protein_coding
description:
  TIGRFAM: DNA binding domain protein, excisionase family; KEGG: ate:Athe_1985 DNA binding domain protein, excisionase family.


ensembl_gene_id: Calkr_0724
symbol: ADQ40251.1
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function DUF2520; KEGG: ate:Athe_1982 6-phosphogluconate dehydrogenase, NAD-binding.


ensembl_gene_id: Calkr_0725
symbol: panB
gene_biotype: protein_coding
description:
  3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.


ensembl_gene_id: Calkr_0726
symbol: panC
gene_biotype: protein_coding
description:
  Pantoate/beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.


ensembl_gene_id: Calkr_0727
symbol: panD
gene_biotype: protein_coding
description:
  Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.


ensembl_gene_id: Calkr_0728
symbol: ADQ40255.1
gene_biotype: protein_coding
description:
  PFAM: ErfK/YbiS/YcfS/YnhG family protein; Peptidoglycan-binding domain 1 protein; KEGG: ate:Athe_1978 ErfK/YbiS/YcfS/YnhG family protein.


ensembl_gene_id: Calkr_0736
symbol: ADQ40263.1
gene_biotype: protein_coding
description:
  PFAM: Xylose isomerase domain-containing protein TIM barrel; KEGG: ate:Athe_1971 xylose isomerase domain protein TIM barrel.


ensembl_gene_id: Calkr_0742
symbol: ADQ40267.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1961 aspartate kinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; Belongs to the aspartokinase family.


ensembl_gene_id: Calkr_0743
symbol: thrB
gene_biotype: protein_coding
description:
  Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.


ensembl_gene_id: Calkr_0744
symbol: ADQ40269.1
gene_biotype: protein_coding
description:
  PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; KEGG: ate:Athe_1959 homoserine dehydrogenase.


ensembl_gene_id: Calkr_0745
symbol: ADQ40270.1
gene_biotype: protein_coding
description:
  PFAM: amino acid-binding ACT domain protein; KEGG: ate:Athe_1958 hypothetical protein; Belongs to the UPF0735 family.


ensembl_gene_id: Calkr_0748
symbol: ADQ40273.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1955 spore germination protein; TIGRFAM: spore germination protein; PFAM: Spore germination protein.


ensembl_gene_id: Calkr_0749
symbol: ADQ40274.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1954 germination protein, Ger(X)C family; TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein.


ensembl_gene_id: Calkr_0751
symbol: apt
gene_biotype: protein_coding
description:
  Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.


ensembl_gene_id: Calkr_0752
symbol: ADQ40277.1
gene_biotype: protein_coding
description:
  (p)ppGpp synthetase I, SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.


ensembl_gene_id: Calkr_0753
symbol: dtd
gene_biotype: protein_coding
description:
  D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family.


ensembl_gene_id: Calkr_0755
symbol: ADQ40280.1
gene_biotype: protein_coding
description:
  Radical SAM domain protein; KEGG: ate:Athe_1948 coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: Calkr_0756
symbol: ADQ40281.1
gene_biotype: protein_coding
description:
  TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: ate:Athe_1946 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase.


ensembl_gene_id: Calkr_0757
symbol: ADQ40282.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1944 fibronectin type III domain protein; PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein.


ensembl_gene_id: Calkr_0759
symbol: ADQ40284.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1942 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.


ensembl_gene_id: Calkr_0760
symbol: ADQ40285.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1941 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Calkr_0762
symbol: ADQ40287.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF6 transmembrane; KEGG: ate:Athe_1939 protein of unknown function DUF6 transmembrane.


ensembl_gene_id: Calkr_0766
symbol: tig
gene_biotype: protein_coding
description:
  Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.


ensembl_gene_id: Calkr_0767
symbol: clpP
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.


ensembl_gene_id: Calkr_0768
symbol: clpX
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.


ensembl_gene_id: Calkr_0769
symbol: ADQ40293.1
gene_biotype: protein_coding
description:
  TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: ate:Athe_0711 deoxyguanosinetriphosphate triphosphohydrolase-like protein; SMART: metal-dependent phosphohydrolase HD region; Belongs to the dGTPase family. Type 2 subfamily.


ensembl_gene_id: Calkr_0770
symbol: dnaG
gene_biotype: protein_coding
description:
  DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.


ensembl_gene_id: Calkr_0771
symbol: sigA
gene_biotype: protein_coding
description:
  RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.


ensembl_gene_id: Calkr_0773
symbol: ADQ40296.1
gene_biotype: protein_coding
description:
  Beta-galactosidase; KEGG: ate:Athe_1927 beta-galactosidase; PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein.


ensembl_gene_id: Calkr_0774
symbol: ADQ40297.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1926 radical SAM domain protein; PFAM: Radical SAM domain protein; helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding class 1.


ensembl_gene_id: Calkr_0777
symbol: ADQ40300.1
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ate:Athe_1923 FAD dependent oxidoreductase.


ensembl_gene_id: Calkr_0778
symbol: ADQ40301.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1922 PHP domain protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein.


ensembl_gene_id: Calkr_0779
symbol: ADQ40302.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1921 DNA internalization-related competence protein ComEC/Rec2; TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein.


ensembl_gene_id: Calkr_0780
symbol: ADQ40303.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1920 DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta.


ensembl_gene_id: Calkr_0782
symbol: ldh
gene_biotype: protein_coding
description:
  L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.


ensembl_gene_id: Calkr_0783
symbol: ADQ40306.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ate:Athe_1917 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Calkr_0784
symbol: ADQ40307.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ate:Athe_1916 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Calkr_0785
symbol: ADQ40308.1
gene_biotype: protein_coding
description:
  TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: ate:Athe_1915 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase.


ensembl_gene_id: Calkr_0786
symbol: ADQ40309.1
gene_biotype: protein_coding
description:
  TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: ate:Athe_1914 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase.


ensembl_gene_id: Calkr_0787
symbol: ADQ40310.1
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: csc:Csac_1032 extracellular solute-binding protein.


ensembl_gene_id: Calkr_0789
symbol: ADQ40312.1
gene_biotype: protein_coding
description:
  TIGRFAM: amidohydrolase; KEGG: ate:Athe_1911 amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein.


ensembl_gene_id: Calkr_0790
symbol: ADQ40313.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1910 transcriptional regulator, GntR family with aminotransferase domain; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH.


ensembl_gene_id: Calkr_0791
symbol: pdxS
gene_biotype: protein_coding
description:
  Pyridoxine biosynthesis protein; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family.


ensembl_gene_id: Calkr_0792
symbol: pdxT
gene_biotype: protein_coding
description:
  SNO glutamine amidotransferase; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS.


ensembl_gene_id: Calkr_0794
symbol: acpS
gene_biotype: protein_coding
description:
  Holo-acyl-carrier-protein synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.


ensembl_gene_id: Calkr_0795
symbol: nnrE
gene_biotype: protein_coding
description:
  Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.  Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow t [...]


ensembl_gene_id: Calkr_0797
symbol: ADQ40320.1
gene_biotype: protein_coding
description:
  Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.


ensembl_gene_id: Calkr_0801
symbol: ADQ40324.1
gene_biotype: protein_coding
description:
  PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: ate:Athe_1899 cytochrome c biogenesis protein transmembrane region.


ensembl_gene_id: Calkr_0802
symbol: ADQ40325.1
gene_biotype: protein_coding
description:
  PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: ate:Athe_1898 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.


ensembl_gene_id: Calkr_0805
symbol: ADQ40328.1
gene_biotype: protein_coding
description:
  PFAM: transport system permease protein; KEGG: ate:Athe_1895 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: Calkr_0808
symbol: ADQ40331.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1892 NLP/P60 protein; PFAM: NLP/P60 protein; SH3 type 3 domain protein; SMART: SH3 domain protein.


ensembl_gene_id: Calkr_0810
symbol: ADQ40333.1
gene_biotype: protein_coding
description:
  TIGRFAM: HAD superfamily (subfamily IIIA) phosphatase, TIGR01668; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: ate:Athe_1890 HAD superfamily (subfamily IIIA) phosphatase, TIGR01668.


ensembl_gene_id: Calkr_0811
symbol: aroE
gene_biotype: protein_coding
description:
  Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).


ensembl_gene_id: Calkr_0812
symbol: ADQ40335.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_1059 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver.


ensembl_gene_id: Calkr_0813
symbol: ADQ40336.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_1060 type II secretion system protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase.


ensembl_gene_id: Calkr_0814
symbol: ADQ40337.1
gene_biotype: protein_coding
description:
  TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: csc:Csac_1061 twitching motility protein; SMART: AAA ATPase.


ensembl_gene_id: Calkr_0818
symbol: ADQ40341.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_1065 peptidase A24A domain-containing protein; PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV.


ensembl_gene_id: Calkr_0828
symbol: ADQ40351.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_2386 putative adenylate/guanylate cyclase; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; Tetratricopeptide TPR_1 repeat-containing protein; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; Tetratricopeptide repeat.


ensembl_gene_id: Calkr_0833
symbol: ADQ40356.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_2382 GAF domain-containing protein; PFAM: GAF domain protein; SMART: GAF domain protein.


ensembl_gene_id: Calkr_0835
symbol: ADQ40358.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1838 phage SPO1 DNA polymerase-related protein; TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily.


ensembl_gene_id: Calkr_0836
symbol: argD
gene_biotype: protein_coding
description:
  TIGRFAM: acetylornithine and succinylornithine aminotransferase; KEGG: ate:Athe_1837 acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.


ensembl_gene_id: Calkr_0839
symbol: uppP
gene_biotype: protein_coding
description:
  Bacitracin resistance protein BacA; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.


ensembl_gene_id: Calkr_0840
symbol: tsaD
gene_biotype: protein_coding
description:
  Metalloendopeptidase, glycoprotease family; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.


ensembl_gene_id: Calkr_0841
symbol: ADQ40364.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1832 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region.


ensembl_gene_id: Calkr_0842
symbol: ADQ40365.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1831 elongation factor G; TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain-containing protein.


ensembl_gene_id: Calkr_0845
symbol: ADQ40368.1
gene_biotype: protein_coding
description:
  Transcriptional repressor, CtsR; PFAM: Firmicute transcriptional repressor of class III stress genes; KEGG: ate:Athe_1828 transcriptional repressor, CtsR; Belongs to the CtsR family.


ensembl_gene_id: Calkr_0847
symbol: mcsB
gene_biotype: protein_coding
description:
  ATP:guanido phosphotransferase; Catalyzes the specific phosphorylation of arginine residues in proteins.


ensembl_gene_id: Calkr_0848
symbol: ADQ40371.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1825 ATPase AAA-2 domain protein; PFAM: ATPase AAA-2 domain protein; Clp domain protein; AAA ATPase central domain protein; UvrB/UvrC protein; Clp ATPase-like; SMART: AAA ATPase; Belongs to the ClpA/ClpB family.


ensembl_gene_id: Calkr_0849
symbol: pfp
gene_biotype: protein_coding
description:
  Phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP- PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions.


ensembl_gene_id: Calkr_0850
symbol: ADQ40373.1
gene_biotype: protein_coding
description:
  PFAM: Fibronectin-binding A domain protein; protein of unknown function DUF814; KEGG: ate:Athe_1823 fibronectin-binding A domain protein.


ensembl_gene_id: Calkr_0855
symbol: ADQ40378.1
gene_biotype: protein_coding
description:
  TIGRFAM: nucleotide sugar dehydrogenase; KEGG: ate:Athe_1818 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase.


ensembl_gene_id: Calkr_0856
symbol: rpsB
gene_biotype: protein_coding
description:
  Ribosomal protein S2; KEGG: ate:Athe_1816 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.


ensembl_gene_id: Calkr_0857
symbol: tsf
gene_biotype: protein_coding
description:
  Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.


ensembl_gene_id: Calkr_0859
symbol: frr
gene_biotype: protein_coding
description:
  Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.


ensembl_gene_id: Calkr_0860
symbol: ADQ40383.1
gene_biotype: protein_coding
description:
  Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.


ensembl_gene_id: Calkr_0861
symbol: ADQ40384.1
gene_biotype: protein_coding
description:
  PFAM: phosphatidate cytidylyltransferase; KEGG: ate:Athe_1811 phosphatidate cytidylyltransferase; Belongs to the CDS family.


ensembl_gene_id: Calkr_0862
symbol: dxr
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.


ensembl_gene_id: Calkr_0863
symbol: ADQ40386.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1809 membrane-associated zinc metalloprotease; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50.


ensembl_gene_id: Calkr_0864
symbol: ispG
gene_biotype: protein_coding
description:
  1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.


ensembl_gene_id: Calkr_0866
symbol: polC
gene_biotype: protein_coding
description:
  DNA polymerase III, alpha subunit; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.


ensembl_gene_id: Calkr_0867
symbol: ADQ40390.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1805 thiamine pyrophosphokinase; TIGRFAM: thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase catalytic domain-containing protein.


ensembl_gene_id: Calkr_0869
symbol: ADQ40392.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1803 ABC transporter related; PFAM: ABC transporter related; TOBE domain-containing protein; SMART: AAA ATPase.


ensembl_gene_id: Calkr_0870
symbol: ADQ40393.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, CdaR; PFAM: helix-turn-helix Fis-type; KEGG: ate:Athe_1802 transcriptional regulator, CdaR.


ensembl_gene_id: Calkr_0871
symbol: ftsE
gene_biotype: protein_coding
description:
  Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.


ensembl_gene_id: Calkr_0872
symbol: ADQ40395.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF214; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.


ensembl_gene_id: Calkr_0874
symbol: ADQ40397.1
gene_biotype: protein_coding
description:
  TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; KEGG: ate:Athe_1798 carboxyl-terminal protease; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; Belongs to the peptidase S41A family.


ensembl_gene_id: Calkr_0878
symbol: ADQ40401.1
gene_biotype: protein_coding
description:
  PFAM: Monogalactosyldiacylglycerol synthase; Glycosyltransferase 28 domain; KEGG: ate:Athe_1794 monogalactosyldiacylglycerol synthase.


ensembl_gene_id: Calkr_0880
symbol: ADQ40403.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1792 germination protein YpeB; TIGRFAM: germination protein YpeB; PFAM: Propeptide PepSY amd peptidase M4.


ensembl_gene_id: Calkr_0882
symbol: gpr
gene_biotype: protein_coding
description:
  Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.


ensembl_gene_id: Calkr_0883
symbol: ADQ40406.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1789 stage II sporulation protein P; TIGRFAM: stage II sporulation protein P; PFAM: Stage II sporulation P family protein.


ensembl_gene_id: Calkr_0886
symbol: xerC
gene_biotype: protein_coding
description:
  Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: Calkr_0887
symbol: ADQ40410.1
gene_biotype: protein_coding
description:
  PFAM: domain of unknown function DUF1727; Mur ligase middle domain protein; KEGG: ate:Athe_1785 domain of unknown function DUF1727.


ensembl_gene_id: Calkr_0888
symbol: ADQ40411.1
gene_biotype: protein_coding
description:
  PFAM: CobB/CobQ domain protein glutamine amidotransferase; KEGG: ate:Athe_1784 CobB/CobQ domain protein glutamine amidotransferase.


ensembl_gene_id: Calkr_0892
symbol: ADQ40415.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: ate:Athe_1780 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Calkr_0893
symbol: ADQ40416.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: csc:Csac_2321 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Calkr_0894
symbol: ADQ40417.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1778 transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain-containing protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.


ensembl_gene_id: Calkr_0895
symbol: ADQ40418.1
gene_biotype: protein_coding
description:
  Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: Calkr_0897
symbol: ADQ40420.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1775 pyrimidine-nucleoside phosphorylase; TIGRFAM: pyrimidine-nucleoside phosphorylase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like; Pyrimidine nucleoside phosphorylase domain.


ensembl_gene_id: Calkr_0898
symbol: deoC
gene_biotype: protein_coding
description:
  Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.


ensembl_gene_id: Calkr_0899
symbol: deoB
gene_biotype: protein_coding
description:
  Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.


ensembl_gene_id: Calkr_0900
symbol: ADQ40423.1
gene_biotype: protein_coding
description:
  Inosine guanosine and xanthosine phosphorylase family; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.


ensembl_gene_id: Calkr_0901
symbol: ADQ40424.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1771 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver.


ensembl_gene_id: Calkr_0902
symbol: ADQ40425.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1770 CheA signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; CheW domain protein; SMART: ATP-binding region ATPase domain protein; Hpt domain protein; CheW domain protein.


ensembl_gene_id: Calkr_0904
symbol: ADQ40427.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1768 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.


ensembl_gene_id: Calkr_0908
symbol: ADQ40431.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1764 TrpR like protein, YerC/YecD; TIGRFAM: TrpR like protein, YerC/YecD; PFAM: Trp repressor.


ensembl_gene_id: Calkr_0909
symbol: ADQ40432.1
gene_biotype: protein_coding
description:
  rRNA (guanine-N(2)-)-methyltransferase; KEGG: ate:Athe_1763 putative RNA methylase; PFAM: RNA methylase.


ensembl_gene_id: Calkr_0915
symbol: gltX
gene_biotype: protein_coding
description:
  glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.


ensembl_gene_id: Calkr_0924
symbol: ADQ40439.1
gene_biotype: protein_coding
description:
  PFAM: transposase IS116/IS110/IS902 family protein; KEGG: cth:Cthe_2770 transposase IS116/IS110/IS902.


ensembl_gene_id: Calkr_0933
symbol: ADQ40447.1
gene_biotype: protein_coding
description:
  PFAM: iron-containing alcohol dehydrogenase; KEGG: ate:Athe_0928 iron-containing alcohol dehydrogenase.


ensembl_gene_id: Calkr_0935
symbol: ADQ40449.1
gene_biotype: protein_coding
description:
  PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: ate:Athe_0930 FAD dependent oxidoreductase.


ensembl_gene_id: Calkr_0936
symbol: ADQ40450.1
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ate:Athe_0931 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Calkr_0938
symbol: ADQ40452.1
gene_biotype: protein_coding
description:
  PFAM: glycerol-3-phosphate responsive antiterminator; KEGG: ate:Athe_0933 glycerol-3-phosphate responsive antiterminator, GlpP.


ensembl_gene_id: Calkr_0939
symbol: lon
gene_biotype: protein_coding
description:
  ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.


ensembl_gene_id: Calkr_0940
symbol: engB
gene_biotype: protein_coding
description:
  Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.


ensembl_gene_id: Calkr_0942
symbol: ADQ40456.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0937 transcriptional regulator, AraC family; PFAM: Transcription regulator,histidine kinase sensor-like; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Calkr_0943
symbol: ADQ40457.1
gene_biotype: protein_coding
description:
  TIGRFAM: galactose-1-phosphate uridylyltransferase; KEGG: ate:Athe_0938 galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein.


ensembl_gene_id: Calkr_0944
symbol: galK
gene_biotype: protein_coding
description:
  Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.


ensembl_gene_id: Calkr_0945
symbol: ADQ40459.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0940 UDP-glucose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.


ensembl_gene_id: Calkr_0949
symbol: ADQ40463.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; KEGG: csc:Csac_2165 regulatory protein GntR, HTH; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.


ensembl_gene_id: Calkr_0952
symbol: ADQ40466.1
gene_biotype: protein_coding
description:
  Helix-turn-helix protein YlxM/p13 family protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.


ensembl_gene_id: Calkr_0953
symbol: ffh
gene_biotype: protein_coding
description:
  Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.


ensembl_gene_id: Calkr_0954
symbol: rpsP
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0968 30S ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.


ensembl_gene_id: Calkr_0955
symbol: ADQ40469.1
gene_biotype: protein_coding
description:
  RNA-binding protein; PFAM: K Homology, type 1, subgroup; KEGG: ate:Athe_0969 RNA-binding protein; Belongs to the UPF0109 family.


ensembl_gene_id: Calkr_0956
symbol: rimM
gene_biotype: protein_coding
description:
  16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.


ensembl_gene_id: Calkr_0957
symbol: trmD
gene_biotype: protein_coding
description:
  tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.


ensembl_gene_id: Calkr_0958
symbol: rplS
gene_biotype: protein_coding
description:
  Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.


ensembl_gene_id: Calkr_0959
symbol: ADQ40473.1
gene_biotype: protein_coding
description:
  Ribosome biogenesis GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.


ensembl_gene_id: Calkr_0963
symbol: ADQ40477.1
gene_biotype: protein_coding
description:
  PFAM: Uncharacterised protein family UPF0102; KEGG: ate:Athe_0977 hypothetical protein; Belongs to the UPF0102 family.


ensembl_gene_id: Calkr_0964
symbol: ADQ40478.1
gene_biotype: protein_coding
description:
  PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: ate:Athe_0978 dipicolinate synthase subunit A.


ensembl_gene_id: Calkr_0965
symbol: ADQ40479.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0979 dipicolinate synthase subunit B; TIGRFAM: dipicolinic acid synthetase, B subunit; PFAM: flavoprotein.


ensembl_gene_id: Calkr_0966
symbol: ADQ40480.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0980 cell divisionFtsK/SpoIIIE; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: AAA ATPase.


ensembl_gene_id: Calkr_0967
symbol: ADQ40481.1
gene_biotype: protein_coding
description:
  Radical SAM domain protein; KEGG: csc:Csac_2143 hypothetical protein; PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: Calkr_0968
symbol: folD
gene_biotype: protein_coding
description:
  Methylenetetrahydrofolate dehydrogenase (NADP(+)); Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.


ensembl_gene_id: Calkr_0969
symbol: rimO
gene_biotype: protein_coding
description:
  MiaB-like tRNA modifying enzyme YliG; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.


ensembl_gene_id: Calkr_0970
symbol: ADQ40484.1
gene_biotype: protein_coding
description:
  TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; KEGG: ate:Athe_0984 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: Calkr_0971
symbol: cinA
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0985 competence/damage-inducible protein CinA; TIGRFAM: competence/damage-inducible protein CinA; PFAM: CinA domain protein; molybdopterin binding domain; Belongs to the CinA family.


ensembl_gene_id: Calkr_0972
symbol: recA
gene_biotype: protein_coding
description:
  recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.


ensembl_gene_id: Calkr_0974
symbol: rny
gene_biotype: protein_coding
description:
  Metal dependent phosphohydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.


ensembl_gene_id: Calkr_0987
symbol: nusB
gene_biotype: protein_coding
description:
  NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.


ensembl_gene_id: Calkr_0988
symbol: xseA
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.


ensembl_gene_id: Calkr_0989
symbol: xseB
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.


ensembl_gene_id: Calkr_0990
symbol: ADQ40504.1
gene_biotype: protein_coding
description:
  PFAM: Polyprenyl synthetase; KEGG: ate:Athe_1004 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: Calkr_0992
symbol: ADQ40506.1
gene_biotype: protein_coding
description:
  Stage V sporulation protein T; KEGG: ate:Athe_1006 transcriptional regulator, AbrB family; TIGRFAM: stage V sporulation protein T; transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain-containing protein.


ensembl_gene_id: Calkr_0994
symbol: ADQ40508.1
gene_biotype: protein_coding
description:
  Indolepyruvate ferredoxin oxidoreductase, alpha subunit; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.


ensembl_gene_id: Calkr_0995
symbol: ADQ40509.1
gene_biotype: protein_coding
description:
  PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: ate:Athe_1009 pyruvate ferredoxin/flavodoxin oxidoreductase.


ensembl_gene_id: Calkr_0996
symbol: ADQ40510.1
gene_biotype: protein_coding
description:
  Phenylacetate--CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).


ensembl_gene_id: Calkr_1016
symbol: ADQ40525.1
gene_biotype: protein_coding
description:
  PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: ate:Athe_0298 peptidase S8/S53 subtilisin kexin sedolisin.


ensembl_gene_id: Calkr_1021
symbol: ADQ40529.1
gene_biotype: protein_coding
description:
  PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: ate:Athe_1032 hydantoinase/oxoprolinase.


ensembl_gene_id: Calkr_1022
symbol: ADQ40530.1
gene_biotype: protein_coding
description:
  PFAM: domain of unknown function DUF1732; YicC-like domain-containing protein; KEGG: ate:Athe_1033 domain of unknown function DUF1732.


ensembl_gene_id: Calkr_1023
symbol: ADQ40531.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF370; KEGG: ate:Athe_1034 hypothetical protein; manually curated; PFAM: protein of unknown function DUF370; Belongs to the RemA family.


ensembl_gene_id: Calkr_1025
symbol: rpoZ
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.


ensembl_gene_id: Calkr_1026
symbol: ADQ40534.1
gene_biotype: protein_coding
description:
  Phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.


ensembl_gene_id: Calkr_1027
symbol: priA
gene_biotype: protein_coding
description:
  Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.


ensembl_gene_id: Calkr_1028
symbol: def
gene_biotype: protein_coding
description:
  Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.


ensembl_gene_id: Calkr_1029
symbol: fmt
gene_biotype: protein_coding
description:
  methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.


ensembl_gene_id: Calkr_1030
symbol: ADQ40538.1
gene_biotype: protein_coding
description:
  PFAM: peptidase membrane zinc metallopeptidase; KEGG: ate:Athe_1041 peptidase membrane zinc metallopeptidase putative.


ensembl_gene_id: Calkr_1032
symbol: rlmN
gene_biotype: protein_coding
description:
  Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.


ensembl_gene_id: Calkr_1033
symbol: ADQ40541.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1044 protein serine/threonine phosphatase; PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein.


ensembl_gene_id: Calkr_1034
symbol: ADQ40542.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1045 serine/threonine protein kinase with PASTA sensor(s); PFAM: Serine/threonine-protein kinase-like domain; PASTA domain containing protein; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain; PASTA domain containing protein.


ensembl_gene_id: Calkr_1035
symbol: rsgA
gene_biotype: protein_coding
description:
  Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.


ensembl_gene_id: Calkr_1036
symbol: ADQ40544.1
gene_biotype: protein_coding
description:
  TIGRFAM: ribulose-phosphate 3-epimerase; KEGG: ate:Athe_1047 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase.


ensembl_gene_id: Calkr_1037
symbol: rimP
gene_biotype: protein_coding
description:
  Protein of unknown function DUF150; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.


ensembl_gene_id: Calkr_1039
symbol: ADQ40547.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF448; KEGG: csc:Csac_2071 hypothetical protein; manually curated; PFAM: protein of unknown function DUF448.


ensembl_gene_id: Calkr_1040
symbol: infB
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.


ensembl_gene_id: Calkr_1041
symbol: rbfA
gene_biotype: protein_coding
description:
  Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.


ensembl_gene_id: Calkr_1042
symbol: ADQ40550.1
gene_biotype: protein_coding
description:
  PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: ate:Athe_1053 phosphoesterase RecJ domain protein.


ensembl_gene_id: Calkr_1043
symbol: truB
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.


ensembl_gene_id: Calkr_1044
symbol: ADQ40552.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1055 riboflavin biosynthesis protein RibF; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase; FAD synthetase; Belongs to the ribF family.


ensembl_gene_id: Calkr_1045
symbol: rpsO
gene_biotype: protein_coding
description:
  Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.


ensembl_gene_id: Calkr_1046
symbol: pnp
gene_biotype: protein_coding
description:
  Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.


ensembl_gene_id: Calkr_1049
symbol: glyA
gene_biotype: protein_coding
description:
  Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.


ensembl_gene_id: Calkr_1050
symbol: ADQ40558.1
gene_biotype: protein_coding
description:
  AAA ATPase central domain protein; KEGG: ate:Athe_1061 recombination factor protein RarA; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase.


ensembl_gene_id: Calkr_1051
symbol: ADQ40559.1
gene_biotype: protein_coding
description:
  PFAM: malic protein NAD-binding; malic protein domain protein; KEGG: ate:Athe_1062 malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)).


ensembl_gene_id: Calkr_1052
symbol: rho
gene_biotype: protein_coding
description:
  Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.


ensembl_gene_id: Calkr_1053
symbol: ADQ40561.1
gene_biotype: protein_coding
description:
  N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; KEGG: ate:Athe_1064 N-acetylmuramoyl-L-alanine amidase; SMART: cell wall hydrolase/autolysin.


ensembl_gene_id: Calkr_1054
symbol: ADQ40562.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1065 8-oxoguanine DNA glycosylase domain protein; PFAM: 8-oxoguanine DNA glycosylase domain-containing protein; HhH-GPD family protein; SMART: HhH-GPD family protein.


ensembl_gene_id: Calkr_1059
symbol: prmC
gene_biotype: protein_coding
description:
  protein-(glutamine-N5) methyltransferase, release factor-specific; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.


ensembl_gene_id: Calkr_1060
symbol: prfA
gene_biotype: protein_coding
description:
  Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.


ensembl_gene_id: Calkr_1064
symbol: ADQ40572.1
gene_biotype: protein_coding
description:
  Sua5/YciO/YrdC/YwlC family protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.


ensembl_gene_id: Calkr_1065
symbol: ADQ40573.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1076 protein tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight.


ensembl_gene_id: Calkr_1066
symbol: rlmH
gene_biotype: protein_coding
description:
  Protein of unknown function DUF163; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.


ensembl_gene_id: Calkr_1067
symbol: argB
gene_biotype: protein_coding
description:
  Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.


ensembl_gene_id: Calkr_1068
symbol: argC
gene_biotype: protein_coding
description:
  N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.


ensembl_gene_id: Calkr_1069
symbol: ADQ40577.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1080 cell wall hydrolase/autolysin; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin.


ensembl_gene_id: Calkr_1070
symbol: ADQ40578.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1081 Cof-like hydrolase; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3.


ensembl_gene_id: Calkr_1071
symbol: ADQ40579.1
gene_biotype: protein_coding
description:
  PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; KEGG: ate:Athe_1082 NADH dehydrogenase (quinone).


ensembl_gene_id: Calkr_1072
symbol: ADQ40580.1
gene_biotype: protein_coding
description:
  PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: ate:Athe_1083 respiratory-chain NADH dehydrogenase subunit 1.


ensembl_gene_id: Calkr_1073
symbol: ADQ40581.1
gene_biotype: protein_coding
description:
  PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: ate:Athe_1084 NADH ubiquinone oxidoreductase 20 kDa subunit.


ensembl_gene_id: Calkr_1074
symbol: ADQ40582.1
gene_biotype: protein_coding
description:
  PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: ate:Athe_1085 NADH dehydrogenase (ubiquinone) 30 kDa subunit.


ensembl_gene_id: Calkr_1075
symbol: ADQ40583.1
gene_biotype: protein_coding
description:
  PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; nickel-dependent hydrogenase large subunit; KEGG: ate:Athe_1086 NADH-ubiquinone oxidoreductase chain 49kDa.


ensembl_gene_id: Calkr_1077
symbol: hypA
gene_biotype: protein_coding
description:
  Hydrogenase nickel insertion protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.


ensembl_gene_id: Calkr_1078
symbol: ADQ40586.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1089 hydrogenase accessory protein HypB; TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K.


ensembl_gene_id: Calkr_1079
symbol: ADQ40587.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1090 (NiFe) hydrogenase maturation protein HypF; TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: SUA5/yciO/yrdC domain; acylphosphatase.


ensembl_gene_id: Calkr_1080
symbol: ADQ40588.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1091 hydrogenase assembly chaperone HypC/HupF; TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC).


ensembl_gene_id: Calkr_1081
symbol: ADQ40589.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1092 hydrogenase formation HypD protein; TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein.


ensembl_gene_id: Calkr_1082
symbol: ADQ40590.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1093 hydrogenase expression/formation protein HypE; TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein domain protein; AIR synthase related protein.


ensembl_gene_id: Calkr_1085
symbol: ADQ40593.1
gene_biotype: protein_coding
description:
  PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: ate:Athe_1096 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.


ensembl_gene_id: Calkr_1086
symbol: ADQ40594.1
gene_biotype: protein_coding
description:
  PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; KEGG: ate:Athe_1097 thiamine pyrophosphate protein domain protein TPP-binding.


ensembl_gene_id: Calkr_1087
symbol: ADQ40595.1
gene_biotype: protein_coding
description:
  PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: ate:Athe_1098 pyruvate ferredoxin/flavodoxin oxidoreductase.


ensembl_gene_id: Calkr_1091
symbol: ADQ40599.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1102 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR.


ensembl_gene_id: Calkr_1092
symbol: ADQ40600.1
gene_biotype: protein_coding
description:
  Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: ate:Athe_1103 alpha-N-arabinofuranosidase; SMART: alpha-L-arabinofuranosidase domain protein.


ensembl_gene_id: Calkr_1095
symbol: ruvC
gene_biotype: protein_coding
description:
  Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.


ensembl_gene_id: Calkr_1096
symbol: ruvA
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.


ensembl_gene_id: Calkr_1097
symbol: ruvB
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.


ensembl_gene_id: Calkr_1098
symbol: queH
gene_biotype: protein_coding
description:
  Protein of unknown function DUF208; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr).


ensembl_gene_id: Calkr_1099
symbol: rplU
gene_biotype: protein_coding
description:
  Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.


ensembl_gene_id: Calkr_1101
symbol: rpmA
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1120 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.


ensembl_gene_id: Calkr_1102
symbol: obg
gene_biotype: protein_coding
description:
  GTP-binding protein Obg/CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.


ensembl_gene_id: Calkr_1105
symbol: ADQ40613.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1124 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein.


ensembl_gene_id: Calkr_1106
symbol: metXA
gene_biotype: protein_coding
description:
  Homoserine O-acetyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine.


ensembl_gene_id: Calkr_1110
symbol: ADQ40618.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1129 adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: Adenylosuccinate lyase-like; fumarate lyase.


ensembl_gene_id: Calkr_1111
symbol: ADQ40619.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1130 methyl-accepting chemotaxis sensory transducer with cache sensor; PFAM: Cache type 2 domain protein; histidine kinase HAMP region domain protein; chemotaxis sensory transducer; SMART: chemotaxis sensory transducer.


ensembl_gene_id: Calkr_1112
symbol: rgy
gene_biotype: protein_coding
description:
  Reverse gyrase; Modifies the topological state of DNA by introducing positive supercoils in an ATP-dependent process. It cleaves transiently a single DNA strand and remains covalently bound to the 5' DNA end through a tyrosine residue. May be involved in rewinding the DNA strands in the regions of the chromosome that have opened up to allow transcription or replication; In the C-terminal section; belongs to the prokaryotic type I/III topoisomerase family.


ensembl_gene_id: Calkr_1114
symbol: ADQ40622.1
gene_biotype: protein_coding
description:
  PFAM: amino acid-binding ACT domain protein; KEGG: ate:Athe_1132 amino acid-binding ACT domain protein.


ensembl_gene_id: Calkr_1115
symbol: dapB
gene_biotype: protein_coding
description:
  Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.


ensembl_gene_id: Calkr_1116
symbol: dapA
gene_biotype: protein_coding
description:
  Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).


ensembl_gene_id: Calkr_1117
symbol: asd
gene_biotype: protein_coding
description:
  Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.


ensembl_gene_id: Calkr_1118
symbol: ADQ40626.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1136 nucleotidyltransferase substrate binding protein, HI0074 family; TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; PFAM: Nucleotidyltransferase substrate binding protein HI0074.


ensembl_gene_id: Calkr_1120
symbol: ispF
gene_biotype: protein_coding
description:
  2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).


ensembl_gene_id: Calkr_1124
symbol: sbcD
gene_biotype: protein_coding
description:
  Nuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.


ensembl_gene_id: Calkr_1126
symbol: ADQ40634.1
gene_biotype: protein_coding
description:
  Uncharacterized protein family UPF0133; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.


ensembl_gene_id: Calkr_1127
symbol: recR
gene_biotype: protein_coding
description:
  Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.


ensembl_gene_id: Calkr_1133
symbol: ADQ40641.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1292; KEGG: ate:Athe_1150 protein of unknown function DUF1292; Belongs to the UPF0473 family.


ensembl_gene_id: Calkr_1134
symbol: ADQ40642.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1151 UTP-glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase.


ensembl_gene_id: Calkr_1135
symbol: ADQ40643.1
gene_biotype: protein_coding
description:
  PFAM: regulatory protein DeoR; KEGG: ate:Athe_1152 fatty acid biosynthesis transcriptional regulator.


ensembl_gene_id: Calkr_1136
symbol: plsX
gene_biotype: protein_coding
description:
  Fatty acid/phospholipid synthesis protein PlsX; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.


ensembl_gene_id: Calkr_1137
symbol: fabH
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.


ensembl_gene_id: Calkr_1138
symbol: ADQ40646.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1155 malonyl CoA-acyl carrier protein transacylase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase.


ensembl_gene_id: Calkr_1139
symbol: ADQ40647.1
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Calkr_1141
symbol: ADQ40649.1
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.


ensembl_gene_id: Calkr_1142
symbol: rnc
gene_biotype: protein_coding
description:
  Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.


ensembl_gene_id: Calkr_1143
symbol: ADQ40651.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1160 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: Calkr_1144
symbol: ADQ40652.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1161 phosphate binding protein; TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1.


ensembl_gene_id: Calkr_1145
symbol: ADQ40653.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1162 phosphate ABC transporter, inner membrane subunit PstC; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Calkr_1146
symbol: ADQ40654.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1163 phosphate ABC transporter, inner membrane subunit PstA; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Calkr_1148
symbol: ADQ40656.1
gene_biotype: protein_coding
description:
  KEGG: cth:Cthe_1840 cysteine synthase; TIGRFAM: cysteine synthase A; cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; Belongs to the cysteine synthase/cystathionine beta- synthase family.


ensembl_gene_id: Calkr_1149
symbol: metN
gene_biotype: protein_coding
description:
  ABC transporter related protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.


ensembl_gene_id: Calkr_1150
symbol: ADQ40658.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_1617 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Calkr_1151
symbol: ADQ40659.1
gene_biotype: protein_coding
description:
  PFAM: NLPA lipoprotein; KEGG: csc:Csac_1618 NlpA lipoprotein; Belongs to the nlpA lipoprotein family.


ensembl_gene_id: Calkr_1152
symbol: smc
gene_biotype: protein_coding
description:
  Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.


ensembl_gene_id: Calkr_1153
symbol: ftsY
gene_biotype: protein_coding
description:
  Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).


ensembl_gene_id: Calkr_1154
symbol: ADQ40662.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family; KEGG: ate:Athe_1171 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding.


ensembl_gene_id: Calkr_1160
symbol: purK
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, ATPase subunit; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).


ensembl_gene_id: Calkr_1161
symbol: purE
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).


ensembl_gene_id: Calkr_1165
symbol: ADQ40673.1
gene_biotype: protein_coding
description:
  TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; KEGG: ate:Athe_1182 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein.


ensembl_gene_id: Calkr_1167
symbol: ADQ40675.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1184 binding-protein-dependent transport systems inner membrane component; manually curated; PFAM: binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Calkr_1168
symbol: ADQ40676.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_1634 thiamine biosynthesis protein ThiS; TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein.


ensembl_gene_id: Calkr_1169
symbol: ADQ40677.1
gene_biotype: protein_coding
description:
  PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: ate:Athe_1186 UBA/ThiF-type NAD/FAD binding protein.


ensembl_gene_id: Calkr_1170
symbol: ADQ40678.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1187 Mov34/MPN/PAD-1 family protein; PFAM: Mov34/MPN/PAD-1 family protein; SMART: Mov34/MPN/PAD-1 family protein.


ensembl_gene_id: Calkr_1171
symbol: ADQ40679.1
gene_biotype: protein_coding
description:
  PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: ate:Athe_1188 nitrite and sulphite reductase 4Fe-4S region.


ensembl_gene_id: Calkr_1172
symbol: ADQ40680.1
gene_biotype: protein_coding
description:
  PFAM: SirA-like domain-containing protein; KEGG: csc:Csac_1638 SirA family protein; Belongs to the sulfur carrier protein TusA family.


ensembl_gene_id: Calkr_1173
symbol: ADQ40681.1
gene_biotype: protein_coding
description:
  PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: ate:Athe_1190 O-acetylhomoserine aminocarboxypropyltransferase.


ensembl_gene_id: Calkr_1174
symbol: ADQ40682.1
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: csc:Csac_1640 adenylylsulfate reductase subunit alpha.


ensembl_gene_id: Calkr_1176
symbol: ADQ40684.1
gene_biotype: protein_coding
description:
  PFAM: phosphoadenosine phosphosulfate reductase; KEGG: csc:Csac_1642 sulfate adenylyltransferase subunit 2.


ensembl_gene_id: Calkr_1177
symbol: ADQ40685.1
gene_biotype: protein_coding
description:
  Sulfate adenylyltransferase, large subunit; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.


ensembl_gene_id: Calkr_1178
symbol: hemA
gene_biotype: protein_coding
description:
  glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).


ensembl_gene_id: Calkr_1180
symbol: hemC
gene_biotype: protein_coding
description:
  Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.


ensembl_gene_id: Calkr_1181
symbol: ADQ40689.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1199 uroporphyrin-III C-methyltransferase; TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4.


ensembl_gene_id: Calkr_1182
symbol: ADQ40690.1
gene_biotype: protein_coding
description:
  Porphobilinogen synthase; KEGG: ate:Athe_1200 delta-aminolevulinic acid dehydratase; PFAM: delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.


ensembl_gene_id: Calkr_1183
symbol: hemL
gene_biotype: protein_coding
description:
  Glutamate-1-semialdehyde-2,1-aminomutase; KEGG: ate:Athe_1201 glutamate-1-semialdehyde aminotransferase; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III.


ensembl_gene_id: Calkr_1185
symbol: infC
gene_biotype: protein_coding
description:
  Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.


ensembl_gene_id: Calkr_1186
symbol: rpmI
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1205 50S ribosomal protein L35; TIGRFAM: ribosomal protein L35; PFAM: Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.


ensembl_gene_id: Calkr_1187
symbol: rplT
gene_biotype: protein_coding
description:
  Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.


ensembl_gene_id: Calkr_1188
symbol: ADQ40696.1
gene_biotype: protein_coding
description:
  PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: ate:Athe_1207 tRNA/rRNA methyltransferase (SpoU); Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: Calkr_1189
symbol: ADQ40697.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF965; KEGG: ate:Athe_1208 hypothetical protein; Belongs to the UPF0297 family.


ensembl_gene_id: Calkr_1192
symbol: ADQ40700.1
gene_biotype: protein_coding
description:
  Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.


ensembl_gene_id: Calkr_1193
symbol: nadA
gene_biotype: protein_coding
description:
  Quinolinate synthetase complex, A subunit; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.


ensembl_gene_id: Calkr_1195
symbol: ADQ40703.1
gene_biotype: protein_coding
description:
  TIGRFAM: nicotinate-nucleotide pyrophosphorylase; KEGG: ate:Athe_1214 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; Belongs to the NadC/ModD family.


ensembl_gene_id: Calkr_1196
symbol: ADQ40704.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1215 nitrate reductase; PFAM: molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: Calkr_1197
symbol: ADQ40705.1
gene_biotype: protein_coding
description:
  Molybdopterin-guanine dinucleotide biosynthesis protein A-like protein; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor; Belongs to the MobA family.


ensembl_gene_id: Calkr_1199
symbol: ADQ40707.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1218 protein of unknown function Met10; PFAM: RNA cap guanine-N2 methyltransferase; SMART: PUA domain containing protein.


ensembl_gene_id: Calkr_1200
symbol: ADQ40708.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1219 RNA methylase, NOL1/NOP2/sun family; TIGRFAM: RNA methylase, NOL1/NOP2/sun family; PFAM: Fmu (Sun) domain protein.


ensembl_gene_id: Calkr_1201
symbol: ADQ40709.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1220 pseudouridine synthase; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: Calkr_1202
symbol: ADQ40710.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins; Belongs to the prokaryotic riboflavin transporter (P-RFT) (TC 2.A.87) family.


ensembl_gene_id: Calkr_1204
symbol: ADQ40712.1
gene_biotype: protein_coding
description:
  DAK2 domain fusion protein YloV; KEGG: ate:Athe_1223 Dak phosphatase; TIGRFAM: DAK2 domain fusion protein YloV; PFAM: Dak phosphatase.


ensembl_gene_id: Calkr_1205
symbol: recG
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.


ensembl_gene_id: Calkr_1206
symbol: ADQ40714.1
gene_biotype: protein_coding
description:
  PFAM: small acid-soluble spore protein alpha/beta type; KEGG: ate:Athe_1225 small acid-soluble spore protein alpha/beta type.


ensembl_gene_id: Calkr_1207
symbol: ADQ40715.1
gene_biotype: protein_coding
description:
  TIGRFAM: methyltransferase; KEGG: ate:Athe_1226 methyltransferase; PFAM: Conserved hypothetical protein CHP00095.


ensembl_gene_id: Calkr_1208
symbol: coaD
gene_biotype: protein_coding
description:
  Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.


ensembl_gene_id: Calkr_1210
symbol: ADQ40718.1
gene_biotype: protein_coding
description:
  PFAM: nucleoside recognition domain protein; KEGG: ate:Athe_1229 nucleoside recognition domain protein.


ensembl_gene_id: Calkr_1212
symbol: tmcAL
gene_biotype: protein_coding
description:
  Protein of unknown function DUF795; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of elongator tRNA(Met), using acetate and ATP as substrates. First activates an acetate ion to form acetyladenylate (Ac- AMP) and then transfers the acetyl group to tRNA to form ac(4)C34.


ensembl_gene_id: Calkr_1213
symbol: ADQ40721.1
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: ate:Athe_1232 acyl-CoA dehydrogenase domain protein.


ensembl_gene_id: Calkr_1214
symbol: ADQ40722.1
gene_biotype: protein_coding
description:
  PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: ate:Athe_1233 electron transfer flavoprotein alpha/beta-subunit.


ensembl_gene_id: Calkr_1215
symbol: ADQ40723.1
gene_biotype: protein_coding
description:
  PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; KEGG: ate:Athe_1234 electron transfer flavoprotein alpha subunit.


ensembl_gene_id: Calkr_1218
symbol: ADQ40726.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1237 glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase.


ensembl_gene_id: Calkr_1219
symbol: ADQ40727.1
gene_biotype: protein_coding
description:
  TIGRFAM: nucleotide sugar dehydrogenase; KEGG: ate:Athe_1238 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase.


ensembl_gene_id: Calkr_1220
symbol: ADQ40728.1
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: ate:Athe_1239 oxidoreductase domain protein.


ensembl_gene_id: Calkr_1225
symbol: ADQ40733.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1244 cell envelope-related transcriptional attenuator; TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator.


ensembl_gene_id: Calkr_1228
symbol: rplY
gene_biotype: protein_coding
description:
  Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.


ensembl_gene_id: Calkr_1230
symbol: argH
gene_biotype: protein_coding
description:
  Manually curated; TIGRFAM: argininosuccinate lyase; KEGG: ate:Athe_1248 argininosuccinate lyase; PFAM: fumarate lyase.


ensembl_gene_id: Calkr_1231
symbol: argG
gene_biotype: protein_coding
description:
  TIGRFAM: argininosuccinate synthase; KEGG: ate:Athe_1249 argininosuccinate synthase; PFAM: argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.


ensembl_gene_id: Calkr_1232
symbol: nadD
gene_biotype: protein_coding
description:
  Nicotinate (nicotinamide) nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).


ensembl_gene_id: Calkr_1233
symbol: ADQ40741.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1251 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region.


ensembl_gene_id: Calkr_1234
symbol: ADQ40742.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1252 cell envelope-related transcriptional attenuator; TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator.


ensembl_gene_id: Calkr_1235
symbol: rsfS
gene_biotype: protein_coding
description:
  Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.


ensembl_gene_id: Calkr_1236
symbol: leuS
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1254 leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: Calkr_1237
symbol: ADQ40745.1
gene_biotype: protein_coding
description:
  PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: ate:Athe_1255 serine-type D-Ala-D-Ala carboxypeptidase.


ensembl_gene_id: Calkr_1238
symbol: ADQ40746.1
gene_biotype: protein_coding
description:
  TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: Soluble ligand binding domain; helix-hairpin-helix motif; KEGG: ate:Athe_1257 competence protein ComEA helix-hairpin-helix repeat protein; SMART: Helix-hairpin-helix DNA-binding class 1.


ensembl_gene_id: Calkr_1240
symbol: rpmF
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1259 50S ribosomal protein L32; TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; Belongs to the bacterial ribosomal protein bL32 family.


ensembl_gene_id: Calkr_1241
symbol: ADQ40749.1
gene_biotype: protein_coding
description:
  Manually curated; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: ate:Athe_1260 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase.


ensembl_gene_id: Calkr_1242
symbol: ADQ40750.1
gene_biotype: protein_coding
description:
  TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: ate:Athe_1261 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region.


ensembl_gene_id: Calkr_1243
symbol: ADQ40751.1
gene_biotype: protein_coding
description:
  DNA polymerase III, alpha subunit; SMART: phosphoesterase PHP domain protein; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: ate:Athe_1262 DNA polymerase III DnaE; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type.


ensembl_gene_id: Calkr_1244
symbol: ADQ40752.1
gene_biotype: protein_coding
description:
  PFAM: tryptophan RNA-binding attenuator protein; KEGG: ate:Athe_1263 transcription attenuation protein MtrB.


ensembl_gene_id: Calkr_1246
symbol: pfkA
gene_biotype: protein_coding
description:
  6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.


ensembl_gene_id: Calkr_1247
symbol: ADQ40755.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1266 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; PEP-utilising protein mobile region.


ensembl_gene_id: Calkr_1249
symbol: rpsU
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_1833 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.


ensembl_gene_id: Calkr_1256
symbol: ADQ40764.1
gene_biotype: protein_coding
description:
  7TM receptor with intracellular metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; metal-dependent phosphohydrolase 7TM intracellular region; KEGG: ate:Athe_1273 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region.


ensembl_gene_id: Calkr_1257
symbol: ybeY
gene_biotype: protein_coding
description:
  Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.


ensembl_gene_id: Calkr_1258
symbol: ADQ40766.1
gene_biotype: protein_coding
description:
  PFAM: diacylglycerol kinase; phosphoesterase PA-phosphatase related; KEGG: ate:Athe_1275 diacylglycerol kinase.


ensembl_gene_id: Calkr_1260
symbol: ADQ40768.1
gene_biotype: protein_coding
description:
  PFAM: RNA-metabolising metallo-beta-lactamase; KEGG: ate:Athe_1277 RNA-metabolising metallo-beta-lactamase.


ensembl_gene_id: Calkr_1262
symbol: aroC
gene_biotype: protein_coding
description:
  Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.


ensembl_gene_id: Calkr_1263
symbol: ADQ40771.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1280 serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein.


ensembl_gene_id: Calkr_1267
symbol: ADQ40774.1
gene_biotype: protein_coding
description:
  TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: protein of unknown function UPF0004; Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; KEGG: ate:Athe_1282 RNA modification enzyme, MiaB family; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: Calkr_1268
symbol: pheS
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1283 phenylalanyl-tRNA synthetase subunit alpha; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.


ensembl_gene_id: Calkr_1269
symbol: pheT
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1284 phenylalanyl-tRNA synthetase subunit beta; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit.


ensembl_gene_id: Calkr_1271
symbol: ADQ40778.1
gene_biotype: protein_coding
description:
  PFAM: acid phosphatase/vanadium-dependent haloperoxidase related; KEGG: ate:Athe_1286 acid phosphatase/vanadium-dependent haloperoxidase related.


ensembl_gene_id: Calkr_1273
symbol: dxs
gene_biotype: protein_coding
description:
  Deoxyxylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.


ensembl_gene_id: Calkr_1274
symbol: ADQ40781.1
gene_biotype: protein_coding
description:
  TIGRFAM: hemolysin A; PFAM: RNA-binding S4 domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: ate:Athe_1289 hemolysin A; SMART: RNA-binding S4 domain protein.


ensembl_gene_id: Calkr_1276
symbol: ADQ40783.1
gene_biotype: protein_coding
description:
  PFAM: ATP-binding region ATPase domain protein; KEGG: ate:Athe_1291 putative anti-sigma regulatory factor, serine/threonine protein kinase.


ensembl_gene_id: Calkr_1279
symbol: ADQ40786.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1294 PHP domain protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein.


ensembl_gene_id: Calkr_1280
symbol: ADQ40787.1
gene_biotype: protein_coding
description:
  PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: ate:Athe_1295 NADH dehydrogenase (ubiquinone) 24 kDa subunit.


ensembl_gene_id: Calkr_1281
symbol: ADQ40788.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1296 histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein.


ensembl_gene_id: Calkr_1283
symbol: ADQ40790.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1298 NADH dehydrogenase (quinone); PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding.


ensembl_gene_id: Calkr_1284
symbol: ADQ40791.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1299 hydrogenase, Fe-only; TIGRFAM: hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; iron hydrogenase small subunit.


ensembl_gene_id: Calkr_1285
symbol: ADQ40792.1
gene_biotype: protein_coding
description:
  Maf protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.


ensembl_gene_id: Calkr_1286
symbol: ADQ40793.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1301 rod shape-determining protein MreB; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl.


ensembl_gene_id: Calkr_1289
symbol: ADQ40796.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1304 penicillin-binding protein 2; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain.


ensembl_gene_id: Calkr_1290
symbol: minC
gene_biotype: protein_coding
description:
  Septum site-determining protein MinC; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family.


ensembl_gene_id: Calkr_1291
symbol: ADQ40798.1
gene_biotype: protein_coding
description:
  TIGRFAM: septum site-determining protein MinD; KEGG: ate:Athe_1306 septum site-determining protein MinD.


ensembl_gene_id: Calkr_1292
symbol: minE
gene_biotype: protein_coding
description:
  Cell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.


ensembl_gene_id: Calkr_1293
symbol: rodA
gene_biotype: protein_coding
description:
  Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.


ensembl_gene_id: Calkr_1295
symbol: ADQ40802.1
gene_biotype: protein_coding
description:
  PFAM: Thiamin pyrophosphokinase catalytic domain-containing protein; KEGG: ate:Athe_1310 thiamin pyrophosphokinase catalytic region.


ensembl_gene_id: Calkr_1299
symbol: speE
gene_biotype: protein_coding
description:
  Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.


ensembl_gene_id: Calkr_1300
symbol: ADQ40807.1
gene_biotype: protein_coding
description:
  Agmatinase; KEGG: ate:Athe_1315 agmatinase; TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; Belongs to the arginase family.


ensembl_gene_id: Calkr_1304
symbol: ADQ40811.1
gene_biotype: protein_coding
description:
  PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: ate:Athe_1318 biotin/lipoyl attachment domain-containing protein.


ensembl_gene_id: Calkr_1305
symbol: ADQ40812.1
gene_biotype: protein_coding
description:
  PFAM: Conserved carboxylase region; pyruvate carboxyltransferase; KEGG: ate:Athe_1319 conserved carboxylase region.


ensembl_gene_id: Calkr_1311
symbol: ADQ40817.1
gene_biotype: protein_coding
description:
  Chorismate mutase; Catalyzes the Claisen rearrangement of chorismate to prephenate. Probably involved in the aromatic amino acid biosynthesis.


ensembl_gene_id: Calkr_1312
symbol: cmk
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1325 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; shikimate kinase.


ensembl_gene_id: Calkr_1313
symbol: ADQ40819.1
gene_biotype: protein_coding
description:
  TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; KEGG: ate:Athe_1326 phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase.


ensembl_gene_id: Calkr_1314
symbol: ispH
gene_biotype: protein_coding
description:
  Hydroxymethylbutenyl pyrophosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.


ensembl_gene_id: Calkr_1318
symbol: alaS
gene_biotype: protein_coding
description:
  alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.


ensembl_gene_id: Calkr_1320
symbol: nadK
gene_biotype: protein_coding
description:
  ATP-NAD/AcoX kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.


ensembl_gene_id: Calkr_1323
symbol: ADQ40829.1
gene_biotype: protein_coding
description:
  SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: stage IV sporulation protein B; KEGG: ate:Athe_1336 stage IV sporulation protein B; PFAM: peptidase S55 SpoIVB.


ensembl_gene_id: Calkr_1324
symbol: ADQ40830.1
gene_biotype: protein_coding
description:
  Sporulation transcriptional activator Spo0A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.


ensembl_gene_id: Calkr_1326
symbol: proC
gene_biotype: protein_coding
description:
  Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.


ensembl_gene_id: Calkr_1331
symbol: ADQ40837.1
gene_biotype: protein_coding
description:
  Alanine racemase domain protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.


ensembl_gene_id: Calkr_1332
symbol: sepF
gene_biotype: protein_coding
description:
  Protein of unknown function DUF552; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA.


ensembl_gene_id: Calkr_1334
symbol: ADQ40840.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1347 RNA-binding S4 domain protein; PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein.


ensembl_gene_id: Calkr_1337
symbol: ileS
gene_biotype: protein_coding
description:
  isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily.


ensembl_gene_id: Calkr_1338
symbol: ADQ40844.1
gene_biotype: protein_coding
description:
  3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).


ensembl_gene_id: Calkr_1342
symbol: ADQ40848.1
gene_biotype: protein_coding
description:
  Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: ate:Athe_1354 transcriptional repressor, CopY family.


ensembl_gene_id: Calkr_1353
symbol: mtnA
gene_biotype: protein_coding
description:
  Translation initiation factor, aIF-2BI family; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).


ensembl_gene_id: Calkr_1356
symbol: ADQ40859.1
gene_biotype: protein_coding
description:
  TIGRFAM: sporulation protein, yteA family; KEGG: ate:Athe_1363 transcriptional regulator, TraR/DksA family.


ensembl_gene_id: Calkr_1359
symbol: ADQ40862.1
gene_biotype: protein_coding
description:
  PFAM: transposase IS116/IS110/IS902 family protein; KEGG: csc:Csac_2393 transposase IS116/IS110/IS902 family protein.


ensembl_gene_id: Calkr_1360
symbol: ADQ40863.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1364 von Willebrand factor type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A.


ensembl_gene_id: Calkr_1365
symbol: lspA
gene_biotype: protein_coding
description:
  Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.


ensembl_gene_id: Calkr_1366
symbol: ADQ40868.1
gene_biotype: protein_coding
description:
  Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: Calkr_1367
symbol: pyrR
gene_biotype: protein_coding
description:
  Uracil phosphoribosyltransferase; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant; Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrR subfamily.


ensembl_gene_id: Calkr_1368
symbol: ADQ40870.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_1930 uracil-xanthine permease; TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease.


ensembl_gene_id: Calkr_1369
symbol: pyrB
gene_biotype: protein_coding
description:
  TIGRFAM: aspartate carbamoyltransferase; KEGG: ate:Athe_1375 aspartate carbamoyltransferase catalytic subunit; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.


ensembl_gene_id: Calkr_1370
symbol: pyrC
gene_biotype: protein_coding
description:
  Dihydroorotase, multifunctional complex type; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.


ensembl_gene_id: Calkr_1371
symbol: pyrF
gene_biotype: protein_coding
description:
  TIGRFAM: orotidine 5'-phosphate decarboxylase; KEGG: ate:Athe_1377 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily.


ensembl_gene_id: Calkr_1372
symbol: carB
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1378 carbamoyl phosphate synthase large subunit; TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; MGS domain protein; Belongs to the CarB family.


ensembl_gene_id: Calkr_1373
symbol: pyrK
gene_biotype: protein_coding
description:
  Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulfur cluster binding domain; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+).


ensembl_gene_id: Calkr_1376
symbol: pyrE
gene_biotype: protein_coding
description:
  Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).


ensembl_gene_id: Calkr_1380
symbol: ADQ40882.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: ate:Athe_1386 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Calkr_1381
symbol: ADQ40883.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: ate:Athe_1387 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Calkr_1382
symbol: ADQ40884.1
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: ate:Athe_1388 extracellular ligand-binding receptor.


ensembl_gene_id: Calkr_1384
symbol: ADQ40886.1
gene_biotype: protein_coding
description:
  PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: ate:Athe_1390 site-specific tyrosine recombinase XerC; Belongs to the 'phage' integrase family.


ensembl_gene_id: Calkr_1389
symbol: eno
gene_biotype: protein_coding
description:
  Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.


ensembl_gene_id: Calkr_1390
symbol: gpmI
gene_biotype: protein_coding
description:
  Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.


ensembl_gene_id: Calkr_1391
symbol: tpiA
gene_biotype: protein_coding
description:
  Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.


ensembl_gene_id: Calkr_1392
symbol: ADQ40894.1
gene_biotype: protein_coding
description:
  TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: ate:Athe_1406 glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain.


ensembl_gene_id: Calkr_1393
symbol: ADQ40895.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, DeoR family; PFAM: sugar-binding domain-containing protein; KEGG: ate:Athe_1407 transcriptional regulator, DeoR family.


ensembl_gene_id: Calkr_1394
symbol: ADQ40896.1
gene_biotype: protein_coding
description:
  TIGRFAM: pyruvate, phosphate dikinase; KEGG: ate:Athe_1409 pyruvate phosphate dikinase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; PEP-utilizing protein; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: Calkr_1395
symbol: glyQS
gene_biotype: protein_coding
description:
  glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: Calkr_1397
symbol: era
gene_biotype: protein_coding
description:
  GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.


ensembl_gene_id: Calkr_1400
symbol: ADQ40902.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1415 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type.


ensembl_gene_id: Calkr_1403
symbol: dut
gene_biotype: protein_coding
description:
  Deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.


ensembl_gene_id: Calkr_1405
symbol: ADQ40907.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1420 heat shock protein DnaJ domain protein; PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein.


ensembl_gene_id: Calkr_1408
symbol: atpC
gene_biotype: protein_coding
description:
  ATP synthase F1, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.


ensembl_gene_id: Calkr_1409
symbol: atpD
gene_biotype: protein_coding
description:
  ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.


ensembl_gene_id: Calkr_1410
symbol: atpG
gene_biotype: protein_coding
description:
  ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.


ensembl_gene_id: Calkr_1411
symbol: atpA
gene_biotype: protein_coding
description:
  ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.


ensembl_gene_id: Calkr_1412
symbol: atpH
gene_biotype: protein_coding
description:
  ATP synthase F1, delta subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family.


ensembl_gene_id: Calkr_1413
symbol: atpF
gene_biotype: protein_coding
description:
  ATP synthase F0, B subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.


ensembl_gene_id: Calkr_1414
symbol: atpE
gene_biotype: protein_coding
description:
  ATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: Calkr_1415
symbol: atpB
gene_biotype: protein_coding
description:
  ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.


ensembl_gene_id: Calkr_1421
symbol: ADQ40923.1
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ate:Athe_1436 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Calkr_1422
symbol: uvrA
gene_biotype: protein_coding
description:
  Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.


ensembl_gene_id: Calkr_1423
symbol: uvrB
gene_biotype: protein_coding
description:
  Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]


ensembl_gene_id: Calkr_1425
symbol: coaE
gene_biotype: protein_coding
description:
  dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.


ensembl_gene_id: Calkr_1426
symbol: polA
gene_biotype: protein_coding
description:
  DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.


ensembl_gene_id: Calkr_1429
symbol: purD
gene_biotype: protein_coding
description:
  TIGRFAM: phosphoribosylamine/glycine ligase; KEGG: ate:Athe_1444 phosphoribosylamine/glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; Belongs to the GARS family.


ensembl_gene_id: Calkr_1430
symbol: purH
gene_biotype: protein_coding
description:
  SMART: AICARFT/IMPCHase bienzyme formylation region; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; KEGG: ate:Athe_1445 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein.


ensembl_gene_id: Calkr_1431
symbol: purN
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.


ensembl_gene_id: Calkr_1432
symbol: purM
gene_biotype: protein_coding
description:
  TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; KEGG: ate:Athe_1447 phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein.


ensembl_gene_id: Calkr_1433
symbol: purF
gene_biotype: protein_coding
description:
  Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.


ensembl_gene_id: Calkr_1434
symbol: purL
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase II; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist  [...]


ensembl_gene_id: Calkr_1435
symbol: purQ
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase I; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist i [...]


ensembl_gene_id: Calkr_1436
symbol: purS
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase, purS; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assi [...]


ensembl_gene_id: Calkr_1437
symbol: purC
gene_biotype: protein_coding
description:
  TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; KEGG: ate:Athe_1452 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase.


ensembl_gene_id: Calkr_1439
symbol: ADQ40941.1
gene_biotype: protein_coding
description:
  PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: ate:Athe_1454 2-alkenal reductase; SMART: PDZ/DHR/GLGF domain protein.


ensembl_gene_id: Calkr_1440
symbol: ADQ40942.1
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; KEGG: ate:Athe_1455 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein.


ensembl_gene_id: Calkr_1441
symbol: ADQ40943.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1456 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver.


ensembl_gene_id: Calkr_1442
symbol: ADQ40944.1
gene_biotype: protein_coding
description:
  PFAM: AIR synthase related protein domain protein; AIR synthase related protein; KEGG: ate:Athe_1457 AIR synthase related protein domain protein.


ensembl_gene_id: Calkr_1444
symbol: ADQ40946.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1459 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: Calkr_1445
symbol: ADQ40947.1
gene_biotype: protein_coding
description:
  PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: ate:Athe_1460 single-stranded DNA-binding protein.


ensembl_gene_id: Calkr_1449
symbol: ADQ40951.1
gene_biotype: protein_coding
description:
  PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: ate:Athe_1464 UBA/ThiF-type NAD/FAD binding protein.


ensembl_gene_id: Calkr_1450
symbol: ADQ40952.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1465 CoA-substrate-specific enzyme activase; TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type.


ensembl_gene_id: Calkr_1453
symbol: nth
gene_biotype: protein_coding
description:
  Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.


ensembl_gene_id: Calkr_1456
symbol: ADQ40958.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1471 mannose-1-phosphate guanylyltransferase (GDP); PFAM: Nucleotidyl transferase; mannose-6-phosphate isomerase type II.


ensembl_gene_id: Calkr_1457
symbol: hisI
gene_biotype: protein_coding
description:
  phosphoribosyl-ATP diphosphatase; KEGG: ate:Athe_1472 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; Phosphoribosyl-ATP pyrophosphohydrolase-like; In the N-terminal section; belongs to the PRA-CH family.


ensembl_gene_id: Calkr_1458
symbol: hisF
gene_biotype: protein_coding
description:
  Imidazoleglycerol phosphate synthase, cyclase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.


ensembl_gene_id: Calkr_1459
symbol: hisA
gene_biotype: protein_coding
description:
  TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; KEGG: ate:Athe_1474 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein.


ensembl_gene_id: Calkr_1460
symbol: hisH
gene_biotype: protein_coding
description:
  Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.


ensembl_gene_id: Calkr_1461
symbol: hisB
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1476 imidazoleglycerol-phosphate dehydratase; PFAM: imidazoleglycerol-phosphate dehydratase.


ensembl_gene_id: Calkr_1462
symbol: hisC
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1477 histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.


ensembl_gene_id: Calkr_1463
symbol: hisD
gene_biotype: protein_coding
description:
  Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.


ensembl_gene_id: Calkr_1464
symbol: hisG
gene_biotype: protein_coding
description:
  ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Short subfamily.


ensembl_gene_id: Calkr_1465
symbol: hisZ
gene_biotype: protein_coding
description:
  Histidine--tRNA ligase; Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine.


ensembl_gene_id: Calkr_1468
symbol: pstB
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, ATPase subunit; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.


ensembl_gene_id: Calkr_1469
symbol: ADQ40971.1
gene_biotype: protein_coding
description:
  PFAM: Putitive phosphate transport regulator; KEGG: ate:Athe_1484 protein of unknown function DUF47.


ensembl_gene_id: Calkr_1471
symbol: ADQ40973.1
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; KEGG: ate:Athe_1486 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.


ensembl_gene_id: Calkr_1472
symbol: ADQ40974.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1487 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver.


ensembl_gene_id: Calkr_1473
symbol: ADQ40975.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF152; KEGG: ate:Athe_1488 protein of unknown function DUF152; Belongs to the multicopper oxidase YfiH/RL5 family.


ensembl_gene_id: Calkr_1474
symbol: tal
gene_biotype: protein_coding
description:
  Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.


ensembl_gene_id: Calkr_1475
symbol: ADQ40977.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1490 FolC bifunctional protein; TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; Belongs to the folylpolyglutamate synthase family.


ensembl_gene_id: Calkr_1476
symbol: valS
gene_biotype: protein_coding
description:
  valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.


ensembl_gene_id: Calkr_1477
symbol: ADQ40979.1
gene_biotype: protein_coding
description:
  Desulfoferrodoxin; KEGG: ate:Athe_1492 desulfoferrodoxin; TIGRFAM: desulfoferrodoxin; PFAM: Desulfoferrodoxin ferrous iron-binding region; Desulfoferrodoxin Dfx domain protein.


ensembl_gene_id: Calkr_1478
symbol: ackA
gene_biotype: protein_coding
description:
  Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.


ensembl_gene_id: Calkr_1479
symbol: ADQ40981.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1494 phosphate acetyltransferase; TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase.


ensembl_gene_id: Calkr_1480
symbol: lexA
gene_biotype: protein_coding
description:
  Transcriptional repressor, LexA family; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.


ensembl_gene_id: Calkr_1482
symbol: hfq
gene_biotype: protein_coding
description:
  RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.


ensembl_gene_id: Calkr_1483
symbol: miaA
gene_biotype: protein_coding
description:
  tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.


ensembl_gene_id: Calkr_1484
symbol: mutL
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.


ensembl_gene_id: Calkr_1485
symbol: mutS
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.


ensembl_gene_id: Calkr_1486
symbol: miaB
gene_biotype: protein_coding
description:
  tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.


ensembl_gene_id: Calkr_1487
symbol: ADQ40989.1
gene_biotype: protein_coding
description:
  PFAM: small acid-soluble spore protein alpha/beta type; KEGG: ate:Athe_1502 small acid-soluble spore protein alpha/beta type.


ensembl_gene_id: Calkr_1488
symbol: ADQ40990.1
gene_biotype: protein_coding
description:
  PFAM: amino acid-binding ACT domain protein; KEGG: ate:Athe_1503 amino acid-binding ACT domain protein.


ensembl_gene_id: Calkr_1490
symbol: ADQ40992.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1505 indolepyruvate ferredoxin oxidoreductase; PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain.


ensembl_gene_id: Calkr_1493
symbol: clpB
gene_biotype: protein_coding
description:
  ATP-dependent chaperone ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.


ensembl_gene_id: Calkr_1494
symbol: ADQ40996.1
gene_biotype: protein_coding
description:
  PFAM: heat shock protein Hsp20; KEGG: csc:Csac_2056 heat shock protein HSP20; Belongs to the small heat shock protein (HSP20) family.


ensembl_gene_id: Calkr_1495
symbol: nrdR
gene_biotype: protein_coding
description:
  ATP-cone domain protein; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.


ensembl_gene_id: Calkr_1496
symbol: ADQ40998.1
gene_biotype: protein_coding
description:
  Diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ate:Athe_1511 diguanylate cyclase with GAF sensor; SMART: GGDEF domain containing protein; GAF domain protein.


ensembl_gene_id: Calkr_1505
symbol: ADQ41004.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0689 single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1.


ensembl_gene_id: Calkr_1508
symbol: metK
gene_biotype: protein_coding
description:
  S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.


ensembl_gene_id: Calkr_1512
symbol: ADQ41011.1
gene_biotype: protein_coding
description:
  KEGG: fno:Fnod_1300 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer.


ensembl_gene_id: Calkr_1516
symbol: ADQ41015.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0666 acetolactate synthase, large subunit, biosynthetic type; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein.


ensembl_gene_id: Calkr_1517
symbol: ilvD
gene_biotype: protein_coding
description:
  TIGRFAM: dihydroxy-acid dehydratase; KEGG: ate:Athe_0665 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; Belongs to the IlvD/Edd family.


ensembl_gene_id: Calkr_1518
symbol: ilvE
gene_biotype: protein_coding
description:
  Branched-chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Calkr_1520
symbol: ADQ41019.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0662 CoA-substrate-specific enzyme activase; TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type.


ensembl_gene_id: Calkr_1523
symbol: lysS
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0659 lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: Calkr_1524
symbol: greA
gene_biotype: protein_coding
description:
  Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.


ensembl_gene_id: Calkr_1528
symbol: ADQ41024.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_2393 transposase IS116/IS110/IS902 family protein; manually curated; PFAM: transposase IS116/IS110/IS902 family protein.


ensembl_gene_id: Calkr_1533
symbol: ADQ41026.1
gene_biotype: protein_coding
description:
  PFAM: secretion protein HlyD family protein; KEGG: ate:Athe_1515 secretion protein HlyD family protein.


ensembl_gene_id: Calkr_1541
symbol: ADQ41034.1
gene_biotype: protein_coding
description:
  KEGG: str:Sterm_4203 DnaB domain protein helicase domain protein; PFAM: DnaB domain protein helicase domain protein; TOPRIM domain-containing protein; DNA primase catalytic core domain; SMART: Toprim sub domain-containing protein.


ensembl_gene_id: Calkr_1546
symbol: ADQ41039.1
gene_biotype: protein_coding
description:
  PFAM: integrase family protein; KEGG: pth:PTH_2135 integrase; Belongs to the 'phage' integrase family.


ensembl_gene_id: Calkr_1552
symbol: ispD
gene_biotype: protein_coding
description:
  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).


ensembl_gene_id: Calkr_1553
symbol: ADQ41046.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1523 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; Rhodanese domain protein; SMART: Rhodanese domain protein.


ensembl_gene_id: Calkr_1554
symbol: ADQ41047.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1524 ATPase, P-type (transporting), HAD superfamily, subfamily IC; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase.


ensembl_gene_id: Calkr_1555
symbol: ADQ41048.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1525 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.


ensembl_gene_id: Calkr_1556
symbol: ADQ41049.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1526 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.


ensembl_gene_id: Calkr_1558
symbol: rplL
gene_biotype: protein_coding
description:
  Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.


ensembl_gene_id: Calkr_1559
symbol: rplJ
gene_biotype: protein_coding
description:
  Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.


ensembl_gene_id: Calkr_1560
symbol: rplA
gene_biotype: protein_coding
description:
  Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.


ensembl_gene_id: Calkr_1561
symbol: rplK
gene_biotype: protein_coding
description:
  Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.


ensembl_gene_id: Calkr_1562
symbol: nusG
gene_biotype: protein_coding
description:
  NusG antitermination factor; Participates in transcription elongation, termination and antitermination.


ensembl_gene_id: Calkr_1563
symbol: secE
gene_biotype: protein_coding
description:
  Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.


ensembl_gene_id: Calkr_1564
symbol: rpmG
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1534 50S ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.


ensembl_gene_id: Calkr_1567
symbol: ADQ41060.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1537 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.


ensembl_gene_id: Calkr_1568
symbol: ispE
gene_biotype: protein_coding
description:
  4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.


ensembl_gene_id: Calkr_1569
symbol: ADQ41062.1
gene_biotype: protein_coding
description:
  TIGRFAM: asparagine synthase (glutamine-hydrolyzing); KEGG: ate:Athe_1539 asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II.


ensembl_gene_id: Calkr_1570
symbol: carA
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1540 carbamoyl-phosphate synthase, small subunit; TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; Belongs to the CarA family.


ensembl_gene_id: Calkr_1571
symbol: carB-2
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1541 carbamoyl-phosphate synthase, large subunit; TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation.


ensembl_gene_id: Calkr_1572
symbol: ADQ41065.1
gene_biotype: protein_coding
description:
  Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.


ensembl_gene_id: Calkr_1575
symbol: ADQ41068.1
gene_biotype: protein_coding
description:
  Manually curated; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: ate:Athe_1545 pseudouridine synthase; SMART: RNA-binding S4 domain protein; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: Calkr_1576
symbol: thiI
gene_biotype: protein_coding
description:
  Thiamine biosynthesis/tRNA modification protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.


ensembl_gene_id: Calkr_1578
symbol: ADQ41071.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.


ensembl_gene_id: Calkr_1579
symbol: prmA
gene_biotype: protein_coding
description:
  Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.


ensembl_gene_id: Calkr_1580
symbol: dnaJ
gene_biotype: protein_coding
description:
  Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]


ensembl_gene_id: Calkr_1582
symbol: grpE
gene_biotype: protein_coding
description:
  GrpE protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent i [...]


ensembl_gene_id: Calkr_1583
symbol: hrcA
gene_biotype: protein_coding
description:
  Heat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons.


ensembl_gene_id: Calkr_1584
symbol: ADQ41077.1
gene_biotype: protein_coding
description:
  Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: Calkr_1585
symbol: lepA
gene_biotype: protein_coding
description:
  GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.


ensembl_gene_id: Calkr_1586
symbol: ADQ41079.1
gene_biotype: protein_coding
description:
  PFAM: Capsule synthesis protein, CapA; KEGG: ate:Athe_1556 poly-gamma-glutamate biosynthesis protein.


ensembl_gene_id: Calkr_1588
symbol: ADQ41081.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1558 glycosyl transferase group 1; manually curated; PFAM: glycosyl transferase group 1.


ensembl_gene_id: Calkr_1589
symbol: ADQ41082.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1559 serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein.


ensembl_gene_id: Calkr_1590
symbol: ADQ41083.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1560 spore cortex-lytic enzyme; TIGRFAM: spore cortex-lytic enzyme; PFAM: cell wall hydrolase SleB; Peptidoglycan-binding domain 1 protein.


ensembl_gene_id: Calkr_1592
symbol: ADQ41085.1
gene_biotype: protein_coding
description:
  Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: ate:Athe_1562 ferric uptake regulator, Fur family.


ensembl_gene_id: Calkr_1593
symbol: ADQ41086.1
gene_biotype: protein_coding
description:
  Small GTP-binding protein; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.


ensembl_gene_id: Calkr_1598
symbol: ADQ41091.1
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; Manually curated; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: tit:Thit_2063 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2.


ensembl_gene_id: Calkr_1600
symbol: ADQ41093.1
gene_biotype: protein_coding
description:
  KEGG: tit:Thit_2065 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Calkr_1605
symbol: ADQ41098.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1590 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat.


ensembl_gene_id: Calkr_1607
symbol: ADQ41100.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1592 AAA ATPase central domain protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase.


ensembl_gene_id: Calkr_1611
symbol: ADQ41104.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1586 protein of unknown function DUF815; PFAM: protein of unknown function DUF815; AAA ATPase central domain protein; SMART: AAA ATPase.


ensembl_gene_id: Calkr_1613
symbol: ADQ41106.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_0634 DNA adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase.


ensembl_gene_id: Calkr_1615
symbol: ADQ41108.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1599 helicase domain protein; PFAM: helicase domain protein; SNF2-related protein; SMART: DEAD-like helicase; helicase domain protein.


ensembl_gene_id: Calkr_1620
symbol: ADQ41113.1
gene_biotype: protein_coding
description:
  KEGG: tpd:Teth39_0924 DEAD/DEAH box helicase domain-containing protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.


ensembl_gene_id: Calkr_1625
symbol: ADQ41118.1
gene_biotype: protein_coding
description:
  PFAM: Circadian clock protein KaiC central region; KEGG: ate:Athe_1613 putative circadian clock protein, KaiC.


ensembl_gene_id: Calkr_1627
symbol: ADQ41120.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1615 cysteine synthase A; TIGRFAM: cysteine synthase A; cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; Belongs to the cysteine synthase/cystathionine beta- synthase family.


ensembl_gene_id: Calkr_1629
symbol: ADQ41122.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0076 transposase; TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB.


ensembl_gene_id: Calkr_1631
symbol: ligA
gene_biotype: protein_coding
description:
  DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily.


ensembl_gene_id: Calkr_1632
symbol: ADQ41125.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF34; KEGG: ate:Athe_1619 protein of unknown function DUF34; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.


ensembl_gene_id: Calkr_1637
symbol: ADQ41130.1
gene_biotype: protein_coding
description:
  Thioredoxin; KEGG: ate:Athe_1625 thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin domain-containing protein; Belongs to the thioredoxin family.


ensembl_gene_id: Calkr_1639
symbol: ADQ41132.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1627 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Calkr_1640
symbol: ADQ41133.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF6 transmembrane; KEGG: ate:Athe_1628 protein of unknown function DUF6 transmembrane.


ensembl_gene_id: Calkr_1642
symbol: ADQ41135.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1630 methyl-accepting chemotaxis sensory transducer; PFAM: Heme NO binding domain protein; chemotaxis sensory transducer; SMART: chemotaxis sensory transducer.


ensembl_gene_id: Calkr_1646
symbol: ychF
gene_biotype: protein_coding
description:
  GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.


ensembl_gene_id: Calkr_1648
symbol: ADQ41140.1
gene_biotype: protein_coding
description:
  PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: ate:Athe_1636 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase.


ensembl_gene_id: Calkr_1651
symbol: guaB
gene_biotype: protein_coding
description:
  Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.


ensembl_gene_id: Calkr_1653
symbol: ADQ41145.1
gene_biotype: protein_coding
description:
  TIGRFAM: signal peptidase I; KEGG: ate:Athe_1641 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region.


ensembl_gene_id: Calkr_1654
symbol: mutS2
gene_biotype: protein_coding
description:
  MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.


ensembl_gene_id: Calkr_1655
symbol: ADQ41147.1
gene_biotype: protein_coding
description:
  PFAM: DNA polymerase beta domain protein region; KEGG: ate:Athe_1643 DNA polymerase beta domain protein region.


ensembl_gene_id: Calkr_1656
symbol: proA
gene_biotype: protein_coding
description:
  Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.


ensembl_gene_id: Calkr_1657
symbol: proB
gene_biotype: protein_coding
description:
  Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.


ensembl_gene_id: Calkr_1659
symbol: ADQ41151.1
gene_biotype: protein_coding
description:
  2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.


ensembl_gene_id: Calkr_1664
symbol: ADQ41155.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1652 flagellar protein FliS; TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS.


ensembl_gene_id: Calkr_1665
symbol: ADQ41156.1
gene_biotype: protein_coding
description:
  Transposase; Manually curated; TIGRFAM: transposase; transposase, IS605 OrfB family; KEGG: ate:Athe_0076 transposase; PFAM: transposase IS605 OrfB.


ensembl_gene_id: Calkr_1666
symbol: ADQ41157.1
gene_biotype: protein_coding
description:
  Flagellar hook-associated 2 domain-containing protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.


ensembl_gene_id: Calkr_1674
symbol: ADQ41165.1
gene_biotype: protein_coding
description:
  KEGG: tnp:Tnap_0554 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; Methyltransferase type 11; glycosyl transferase group 1; Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat.


ensembl_gene_id: Calkr_1676
symbol: ADQ41167.1
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 2; Tetratricopeptide TPR_1 repeat-containing protein; KEGG: csc:Csac_1681 glycosyl transferase family protein.


ensembl_gene_id: Calkr_1677
symbol: ADQ41168.1
gene_biotype: protein_coding
description:
  Flagellin domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.


ensembl_gene_id: Calkr_1679
symbol: ADQ41170.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_1679 DEAD/DEAH box helicase domain-containing protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.


ensembl_gene_id: Calkr_1685
symbol: csrA
gene_biotype: protein_coding
description:
  Carbon storage regulator, CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.


ensembl_gene_id: Calkr_1686
symbol: fliW
gene_biotype: protein_coding
description:
  Protein of unknown function DUF180; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum.


ensembl_gene_id: Calkr_1689
symbol: ADQ41179.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_1665 flagellar hook-associated protein FlgL; TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein.


ensembl_gene_id: Calkr_1690
symbol: flgK
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1675 flagellar hook-associated protein FlgK; TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein.


ensembl_gene_id: Calkr_1692
symbol: ADQ41182.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1677 anti-sigma-28 factor, FlgM; TIGRFAM: Anti-sigma-28 factor FlgM family protein; PFAM: Anti-sigma-28 factor FlgM family protein.


ensembl_gene_id: Calkr_1695
symbol: ADQ41185.1
gene_biotype: protein_coding
description:
  RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: Calkr_1696
symbol: spoIIAB
gene_biotype: protein_coding
description:
  Anti-sigma regulatory factor, serine/threonine protein kinase; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.


ensembl_gene_id: Calkr_1697
symbol: ADQ41187.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1682 anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS.


ensembl_gene_id: Calkr_1699
symbol: truA
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.


ensembl_gene_id: Calkr_1701
symbol: ecfA
gene_biotype: protein_coding
description:
  ABC transporter related protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.


ensembl_gene_id: Calkr_1704
symbol: trpA
gene_biotype: protein_coding
description:
  Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.


ensembl_gene_id: Calkr_1705
symbol: trpB
gene_biotype: protein_coding
description:
  Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.


ensembl_gene_id: Calkr_1706
symbol: trpF
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1692 phosphoribosylanthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); Belongs to the TrpF family.


ensembl_gene_id: Calkr_1707
symbol: ADQ41197.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1693 indole-3-glycerol-phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase; Belongs to the TrpC family.


ensembl_gene_id: Calkr_1708
symbol: trpD
gene_biotype: protein_coding
description:
  Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).


ensembl_gene_id: Calkr_1709
symbol: ADQ41199.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1695 glutamine amidotransferase of anthranilate synthase; TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I.


ensembl_gene_id: Calkr_1712
symbol: aroQ
gene_biotype: protein_coding
description:
  3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.


ensembl_gene_id: Calkr_1713
symbol: ADQ41203.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1699 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase domain-containing protein TIM barrel; SMART: AP endonuclease family 2.


ensembl_gene_id: Calkr_1714
symbol: aroK
gene_biotype: protein_coding
description:
  Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.


ensembl_gene_id: Calkr_1716
symbol: ADQ41206.1
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: ate:Athe_1702 RNA polymerase sigma factor SigY; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2.


ensembl_gene_id: Calkr_1722
symbol: ADQ41211.1
gene_biotype: protein_coding
description:
  PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; thiamine pyrophosphate TPP-binding domain-containing protein; KEGG: ate:Athe_1708 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.


ensembl_gene_id: Calkr_1723
symbol: ADQ41212.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1709 pyruvate/ketoisovalerate oxidoreductase, gamma subunit; TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit; PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain.


ensembl_gene_id: Calkr_1725
symbol: ADQ41214.1
gene_biotype: protein_coding
description:
  TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP domain protein; KEGG: ate:Athe_1711 histidinol phosphate phosphatase HisJ family; SMART: phosphoesterase PHP domain protein; Belongs to the PHP hydrolase family. HisK subfamily.


ensembl_gene_id: Calkr_1726
symbol: mnmA
gene_biotype: protein_coding
description:
  tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.


ensembl_gene_id: Calkr_1727
symbol: ADQ41216.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1713 FeS cluster assembly scaffold protein NifU; TIGRFAM: FeS cluster assembly scaffold protein NifU; PFAM: nitrogen-fixing NifU domain protein.


ensembl_gene_id: Calkr_1728
symbol: iscS
gene_biotype: protein_coding
description:
  Cysteine desulfurase NifS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.


ensembl_gene_id: Calkr_1729
symbol: ADQ41218.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1715 transcriptional regulator, BadM/Rrf2 family; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074.


ensembl_gene_id: Calkr_1731
symbol: rplQ
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1716 50S ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17.


ensembl_gene_id: Calkr_1732
symbol: rpoA
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: Calkr_1733
symbol: rpsD
gene_biotype: protein_coding
description:
  Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.


ensembl_gene_id: Calkr_1734
symbol: rpsK
gene_biotype: protein_coding
description:
  30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.


ensembl_gene_id: Calkr_1735
symbol: rpsM
gene_biotype: protein_coding
description:
  30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.


ensembl_gene_id: Calkr_1736
symbol: rpmJ
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_2263 50S ribosomal protein L36; TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.


ensembl_gene_id: Calkr_1737
symbol: infA
gene_biotype: protein_coding
description:
  Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.


ensembl_gene_id: Calkr_1739
symbol: map
gene_biotype: protein_coding
description:
  Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.


ensembl_gene_id: Calkr_1740
symbol: adk
gene_biotype: protein_coding
description:
  Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.


ensembl_gene_id: Calkr_1741
symbol: secY
gene_biotype: protein_coding
description:
  Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.


ensembl_gene_id: Calkr_1742
symbol: rplO
gene_biotype: protein_coding
description:
  Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.


ensembl_gene_id: Calkr_1743
symbol: rpsE
gene_biotype: protein_coding
description:
  Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.


ensembl_gene_id: Calkr_1744
symbol: rplR
gene_biotype: protein_coding
description:
  Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.


ensembl_gene_id: Calkr_1745
symbol: rplF
gene_biotype: protein_coding
description:
  Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.


ensembl_gene_id: Calkr_1746
symbol: rpsH
gene_biotype: protein_coding
description:
  Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.


ensembl_gene_id: Calkr_1747
symbol: rpsZ
gene_biotype: protein_coding
description:
  Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.


ensembl_gene_id: Calkr_1748
symbol: rplE
gene_biotype: protein_coding
description:
  Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.


ensembl_gene_id: Calkr_1749
symbol: rplX
gene_biotype: protein_coding
description:
  Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.


ensembl_gene_id: Calkr_1750
symbol: rplN
gene_biotype: protein_coding
description:
  Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.


ensembl_gene_id: Calkr_1751
symbol: rpsQ
gene_biotype: protein_coding
description:
  30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.


ensembl_gene_id: Calkr_1752
symbol: rpmC
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1737 50S ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.


ensembl_gene_id: Calkr_1753
symbol: rplP
gene_biotype: protein_coding
description:
  Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.


ensembl_gene_id: Calkr_1754
symbol: rpsC
gene_biotype: protein_coding
description:
  Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.


ensembl_gene_id: Calkr_1755
symbol: rplV
gene_biotype: protein_coding
description:
  Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.


ensembl_gene_id: Calkr_1756
symbol: rpsS
gene_biotype: protein_coding
description:
  Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.


ensembl_gene_id: Calkr_1757
symbol: rplB
gene_biotype: protein_coding
description:
  Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.


ensembl_gene_id: Calkr_1758
symbol: rplW
gene_biotype: protein_coding
description:
  Ribosomal protein L25/L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.


ensembl_gene_id: Calkr_1760
symbol: rplC
gene_biotype: protein_coding
description:
  50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.


ensembl_gene_id: Calkr_1761
symbol: rpsJ
gene_biotype: protein_coding
description:
  Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.


ensembl_gene_id: Calkr_1763
symbol: ADQ41252.1
gene_biotype: protein_coding
description:
  PFAM: Ferritin Dps family protein; KEGG: ate:Athe_1748 ferritin Dps family protein; Belongs to the Dps family.


ensembl_gene_id: Calkr_1764
symbol: ADQ41253.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1749 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain.


ensembl_gene_id: Calkr_1765
symbol: ADQ41254.1
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; KEGG: ate:Athe_1750 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein.


ensembl_gene_id: Calkr_1766
symbol: ADQ41255.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1751 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver.


ensembl_gene_id: Calkr_1768
symbol: ADQ41257.1
gene_biotype: protein_coding
description:
  PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; KEGG: ate:Athe_1752 phosphoglucomutase.


ensembl_gene_id: Calkr_1771
symbol: ADQ41260.1
gene_biotype: protein_coding
description:
  PFAM: natural resistance-associated macrophage protein; KEGG: ate:Athe_1755 natural resistance-associated macrophage protein.


ensembl_gene_id: Calkr_1773
symbol: ADQ41262.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1757 radical SAM domain protein; PFAM: Radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: Calkr_1775
symbol: ADQ41264.1
gene_biotype: protein_coding
description:
  PFAM: SirA-like domain-containing protein; KEGG: csc:Csac_2304 SirA family protein; Belongs to the sulfur carrier protein TusA family.


ensembl_gene_id: Calkr_1783
symbol: ADQ41270.1
gene_biotype: protein_coding
description:
  PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Mur ligase middle domain protein; KEGG: ate:Athe_0527 Mur ligase middle domain protein.


ensembl_gene_id: Calkr_1784
symbol: ADQ41271.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0526 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.


ensembl_gene_id: Calkr_1785
symbol: ADQ41272.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0525 isocitrate dehydrogenase (NAD(+)); PFAM: isocitrate/isopropylmalate dehydrogenase.


ensembl_gene_id: Calkr_1786
symbol: ADQ41273.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0524 aconitate hydratase; TIGRFAM: aconitate hydratase; homoaconitate hydratase family protein; PFAM: aconitate hydratase domain-containing protein.


ensembl_gene_id: Calkr_1787
symbol: ADQ41274.1
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: ate:Athe_0523 extracellular ligand-binding receptor.


ensembl_gene_id: Calkr_1789
symbol: ADQ41276.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2457 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Calkr_1790
symbol: ADQ41277.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_2458 molybdenum ABC transporter, periplasmic molybdate-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1.


ensembl_gene_id: Calkr_1791
symbol: ADQ41278.1
gene_biotype: protein_coding
description:
  PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: csc:Csac_2459 dinitrogenase iron-molybdenum cofactor biosynthesis protein.


ensembl_gene_id: Calkr_1792
symbol: ADQ41279.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_2460 radical SAM domain-containing protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: Calkr_1795
symbol: ADQ41282.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_2463 nitrogenase component I, alpha chain; TIGRFAM: nitrogenase component I, alpha chain; nitrogenase alpha chain; PFAM: oxidoreductase/nitrogenase component 1.


ensembl_gene_id: Calkr_1796
symbol: ADQ41283.1
gene_biotype: protein_coding
description:
  PFAM: nitrogen regulatory protein P-II; KEGG: csc:Csac_2464 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.


ensembl_gene_id: Calkr_1797
symbol: ADQ41284.1
gene_biotype: protein_coding
description:
  PFAM: nitrogen regulatory protein P-II; KEGG: csc:Csac_2465 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.


ensembl_gene_id: Calkr_1798
symbol: nifH
gene_biotype: protein_coding
description:
  Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.


ensembl_gene_id: Calkr_1799
symbol: ADQ41286.1
gene_biotype: protein_coding
description:
  PFAM: nitrogen regulatory protein P-II; KEGG: csc:Csac_2476 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.


ensembl_gene_id: Calkr_1800
symbol: ADQ41287.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_2477 ammonium transporter; TIGRFAM: ammonium transporter; PFAM: ammonium transporter.


ensembl_gene_id: Calkr_1809
symbol: tmk
gene_biotype: protein_coding
description:
  Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.


ensembl_gene_id: Calkr_1810
symbol: ADQ41297.1
gene_biotype: protein_coding
description:
  Arginine decarboxylase; KEGG: ate:Athe_0511 Orn/Lys/Arg decarboxylase major region; PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein.


ensembl_gene_id: Calkr_1811
symbol: ADQ41298.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0510 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region.


ensembl_gene_id: Calkr_1812
symbol: ADQ41299.1
gene_biotype: protein_coding
description:
  4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.


ensembl_gene_id: Calkr_1814
symbol: ADQ41300.1
gene_biotype: protein_coding
description:
  Manually curated; TIGRFAM: transposase, IS605 OrfB family; KEGG: tte:TTE0715 transposase; PFAM: transposase IS605 OrfB; transposase IS891/IS1136/IS1341 family.


ensembl_gene_id: Calkr_1817
symbol: ADQ41303.1
gene_biotype: protein_coding
description:
  TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; KEGG: ate:Athe_0507 putative alpha-isopropylmalate/homocitrate synthase family transferase; PFAM: LeuA allosteric (dimerisation) domain-containing protein; pyruvate carboxyltransferase; Belongs to the alpha-IPM synthase/homocitrate synthase family.


ensembl_gene_id: Calkr_1818
symbol: leuA
gene_biotype: protein_coding
description:
  2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily.


ensembl_gene_id: Calkr_1819
symbol: ilvC
gene_biotype: protein_coding
description:
  Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.


ensembl_gene_id: Calkr_1820
symbol: ADQ41306.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_1143 acetolactate synthase, small subunit; TIGRFAM: acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit-like; amino acid-binding ACT domain protein.


ensembl_gene_id: Calkr_1821
symbol: ADQ41307.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0502 acetolactate synthase, large subunit, biosynthetic type; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein.


ensembl_gene_id: Calkr_1822
symbol: ADQ41308.1
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ate:Athe_0501 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Calkr_1826
symbol: ADQ41311.1
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: hor:Hore_21930 major facilitator superfamily MFS_1.


ensembl_gene_id: Calkr_1840
symbol: ADQ41324.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0473 small GTP-binding protein; TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related.


ensembl_gene_id: Calkr_1843
symbol: ADQ41327.1
gene_biotype: protein_coding
description:
  Alpha-galactosidase; KEGG: ate:Athe_0468 glycoside hydrolase clan GH-D; PFAM: glycoside hydrolase clan GH-D.


ensembl_gene_id: Calkr_1844
symbol: ADQ41328.1
gene_biotype: protein_coding
description:
  CRISPR-associated protein Cas6; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA).


ensembl_gene_id: Calkr_1845
symbol: ADQ41329.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0466 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.


ensembl_gene_id: Calkr_1850
symbol: ADQ41332.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_1856 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Calkr_1855
symbol: ADQ41334.1
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; KEGG: ate:Athe_0857 glycoside hydrolase family 2 sugar binding; Belongs to the glycosyl hydrolase 2 family.


ensembl_gene_id: Calkr_1857
symbol: ADQ41336.1
gene_biotype: protein_coding
description:
  PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: ate:Athe_0855 mannitol dehydrogenase domain protein.


ensembl_gene_id: Calkr_1858
symbol: ADQ41337.1
gene_biotype: protein_coding
description:
  Alpha-glucuronidase; KEGG: ate:Athe_0854 alpha-glucuronidase; PFAM: Glycosyl hydrolase 67 middle domain protein; glycosyl hydrolase 67 C-teriminal domain protein.


ensembl_gene_id: Calkr_1859
symbol: ADQ41338.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0853 two component transcriptional regulator, AraC family; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; Helix-turn-helix, AraC domain.


ensembl_gene_id: Calkr_1860
symbol: ADQ41339.1
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; KEGG: ate:Athe_0852 putative sensor with HAMP domain; PFAM: histidine kinase internal region; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase HAMP region domain protein.


ensembl_gene_id: Calkr_1861
symbol: ADQ41340.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ate:Athe_0851 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Calkr_1862
symbol: ADQ41341.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ate:Athe_0850 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Calkr_1863
symbol: ADQ41342.1
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: ate:Athe_0849 extracellular solute-binding protein family 1.


ensembl_gene_id: Calkr_1865
symbol: ADQ41344.1
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: ate:Athe_0847 extracellular solute-binding protein family 1.


ensembl_gene_id: Calkr_1866
symbol: hisC-2
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0846 histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.


ensembl_gene_id: Calkr_1867
symbol: ADQ41346.1
gene_biotype: protein_coding
description:
  TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: ate:Athe_0845 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA.


ensembl_gene_id: Calkr_1869
symbol: aroA
gene_biotype: protein_coding
description:
  3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.


ensembl_gene_id: Calkr_1870
symbol: ADQ41349.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0842 transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR.


ensembl_gene_id: Calkr_1872
symbol: ADQ41351.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0839 phosphodiesterase, MJ0936 family; TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase.


ensembl_gene_id: Calkr_1873
symbol: ADQ41352.1
gene_biotype: protein_coding
description:
  Non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.


ensembl_gene_id: Calkr_1874
symbol: rph
gene_biotype: protein_coding
description:
  Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.


ensembl_gene_id: Calkr_1876
symbol: ADQ41355.1
gene_biotype: protein_coding
description:
  PFAM: Glycosyl transferase, family 4, conserved region; KEGG: ate:Athe_0835 glycosyl transferase family 4.


ensembl_gene_id: Calkr_1878
symbol: ADQ41357.1
gene_biotype: protein_coding
description:
  PFAM: MCP methyltransferase CheR-type; KEGG: ate:Athe_0833 MCP methyltransferase, CheR-type; SMART: MCP methyltransferase CheR-type.


ensembl_gene_id: Calkr_1880
symbol: ADQ41359.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0831 molybdenum cofactor synthesis domain protein; TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain.


ensembl_gene_id: Calkr_1881
symbol: moaC
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein C; Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC family.


ensembl_gene_id: Calkr_1882
symbol: ADQ41361.1
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate; Belongs to the radical SAM superfamily. MoaA family.


ensembl_gene_id: Calkr_1883
symbol: ADQ41362.1
gene_biotype: protein_coding
description:
  Molybdenum cofactor synthesis domain protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.


ensembl_gene_id: Calkr_1886
symbol: ADQ41365.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ate:Athe_0825 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Calkr_1887
symbol: ADQ41366.1
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: ate:Athe_0824 extracellular solute-binding protein family 1.


ensembl_gene_id: Calkr_1888
symbol: ADQ41367.1
gene_biotype: protein_coding
description:
  PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: ate:Athe_0823 UBA/ThiF-type NAD/FAD binding protein.


ensembl_gene_id: Calkr_1890
symbol: ADQ41369.1
gene_biotype: protein_coding
description:
  PFAM: Aldehyde ferredoxin oxidoreductase; aldehyde ferredoxin oxidoreductase; KEGG: ate:Athe_0821 aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase.


ensembl_gene_id: Calkr_1892
symbol: ADQ41371.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0819 5-carboxymethyl-2-hydroxymuconate delta-isomerase; PFAM: fumarylacetoacetate (FAA) hydrolase.


ensembl_gene_id: Calkr_1898
symbol: ADQ41377.1
gene_biotype: protein_coding
description:
  PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; Uncharacterised protein family UPF0029, Impact, C-terminal; KEGG: ate:Athe_0813 protein of unknown function UPF0029.


ensembl_gene_id: Calkr_1900
symbol: hflX
gene_biotype: protein_coding
description:
  GTP-binding proten HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.


ensembl_gene_id: Calkr_1901
symbol: tuf
gene_biotype: protein_coding
description:
  Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.


ensembl_gene_id: Calkr_1902
symbol: fusA
gene_biotype: protein_coding
description:
  Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]


ensembl_gene_id: Calkr_1903
symbol: rpsG
gene_biotype: protein_coding
description:
  Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.


ensembl_gene_id: Calkr_1904
symbol: rpsL
gene_biotype: protein_coding
description:
  Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.


ensembl_gene_id: Calkr_1905
symbol: ADQ41384.1
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: ate:Athe_0806 ribosomal protein L7Ae/L30e/S12e/Gadd45.


ensembl_gene_id: Calkr_1906
symbol: rpoC
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: Calkr_1907
symbol: rpoB
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: Calkr_1911
symbol: thrS
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0801 threonyl-tRNA synthetase; TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Threonyl/alanyl tRNA synthetase SAD; TGS domain-containing protein; Anticodon-binding domain protein; Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: Calkr_1912
symbol: ADQ41390.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0800 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat.


ensembl_gene_id: Calkr_1913
symbol: ADQ41391.1
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: ate:Athe_0799 putative transcriptional regulator.


ensembl_gene_id: Calkr_1914
symbol: ADQ41392.1
gene_biotype: protein_coding
description:
  TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: ate:Athe_0798 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region.


ensembl_gene_id: Calkr_1916
symbol: ADQ41394.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0796 sporulation protein YtfJ; TIGRFAM: sporulation protein YtfJ; PFAM: Sporulation protein YtfJ.


ensembl_gene_id: Calkr_1918
symbol: ADQ41396.1
gene_biotype: protein_coding
description:
  Chromosome segregation and condensation protein, ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: Calkr_1919
symbol: scpA
gene_biotype: protein_coding
description:
  Chromosome segregation and condensation protein ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: Calkr_1920
symbol: trpS
gene_biotype: protein_coding
description:
  tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: Calkr_1922
symbol: lysA
gene_biotype: protein_coding
description:
  Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.


ensembl_gene_id: Calkr_1925
symbol: ADQ41403.1
gene_biotype: protein_coding
description:
  RNA polymerase, sigma 28 subunit, SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: Calkr_1926
symbol: ADQ41404.1
gene_biotype: protein_coding
description:
  Peptidase U4 sporulation factor SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.


ensembl_gene_id: Calkr_1927
symbol: ADQ41405.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF303 acetylesterase; glycoside hydrolase family 2 sugar binding; KEGG: csc:Csac_0206 protein of unknown function DUF303, acetylesterase putative; Belongs to the glycosyl hydrolase 2 family.


ensembl_gene_id: Calkr_1929
symbol: ADQ41407.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_0204 glycoside hydrolase family protein; PFAM: glycoside hydrolase family 10; SMART: glycoside hydrolase family 10.


ensembl_gene_id: Calkr_1930
symbol: ftsZ
gene_biotype: protein_coding
description:
  Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.


ensembl_gene_id: Calkr_1935
symbol: murG
gene_biotype: protein_coding
description:
  Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.


ensembl_gene_id: Calkr_1936
symbol: ADQ41414.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0777 cell division protein FtsW; TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; Belongs to the SEDS family.


ensembl_gene_id: Calkr_1937
symbol: murD
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoylalanine/D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.


ensembl_gene_id: Calkr_1938
symbol: mraY
gene_biotype: protein_coding
description:
  phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.


ensembl_gene_id: Calkr_1939
symbol: murF
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.


ensembl_gene_id: Calkr_1940
symbol: murE
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramyl-tripeptide synthetase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.


ensembl_gene_id: Calkr_1941
symbol: ADQ41419.1
gene_biotype: protein_coding
description:
  SMART: PASTA domain containing protein; TIGRFAM: stage V sporulation protein D; KEGG: ate:Athe_0772 stage V sporulation protein D; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein.


ensembl_gene_id: Calkr_1943
symbol: rsmH
gene_biotype: protein_coding
description:
  S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.


ensembl_gene_id: Calkr_1944
symbol: mraZ
gene_biotype: protein_coding
description:
  MraZ protein; KEGG: ate:Athe_0769 cell division protein MraZ; TIGRFAM: MraZ protein; PFAM: MraZ domain; Belongs to the MraZ family.


ensembl_gene_id: Calkr_1946
symbol: lgt
gene_biotype: protein_coding
description:
  Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.


ensembl_gene_id: Calkr_1949
symbol: ADQ41427.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_0912 HI0074 family nucleotidyltransferase substrate binding protein; TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; PFAM: Nucleotidyltransferase substrate binding protein HI0074.


ensembl_gene_id: Calkr_1950
symbol: ADQ41428.1
gene_biotype: protein_coding
description:
  PFAM: DNA polymerase beta domain protein region; KEGG: ate:Athe_0763 DNA polymerase beta domain protein region.


ensembl_gene_id: Calkr_1951
symbol: gatB
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.


ensembl_gene_id: Calkr_1952
symbol: gatA
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) amidotransferase, A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).


ensembl_gene_id: Calkr_1953
symbol: gatC
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.


ensembl_gene_id: Calkr_1960
symbol: hppA
gene_biotype: protein_coding
description:
  V-type H(+)-translocating pyrophosphatase; Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force.


ensembl_gene_id: Calkr_1961
symbol: hslO
gene_biotype: protein_coding
description:
  Hsp33 protein; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress.


ensembl_gene_id: Calkr_1962
symbol: ADQ41439.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0754 cold-shock DNA-binding domain protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein.


ensembl_gene_id: Calkr_1965
symbol: der
gene_biotype: protein_coding
description:
  Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.


ensembl_gene_id: Calkr_1969
symbol: ADQ41446.1
gene_biotype: protein_coding
description:
  RNA polymerase, sigma 28 subunit, SigK; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: Calkr_1972
symbol: mltG
gene_biotype: protein_coding
description:
  Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.


ensembl_gene_id: Calkr_1973
symbol: ADQ41450.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0732 GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein.


ensembl_gene_id: Calkr_1976
symbol: ADQ41451.1
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 28; KEGG: ate:Athe_2380 galacturan 1,4-alpha-galacturonidase; Belongs to the glycosyl hydrolase 28 family.


ensembl_gene_id: Calkr_1978
symbol: ADQ41453.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2383 2-deoxy-D-gluconate 3-dehydrogenase; TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Calkr_1979
symbol: kduI
gene_biotype: protein_coding
description:
  4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.


ensembl_gene_id: Calkr_1980
symbol: ADQ41455.1
gene_biotype: protein_coding
description:
  PfkB domain protein; KEGG: csc:Csac_2720 ribokinase-like domain-containing protein; manually curated; PFAM: PfkB domain protein.


ensembl_gene_id: Calkr_1981
symbol: ADQ41456.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_0354 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase.


ensembl_gene_id: Calkr_1982
symbol: ADQ41457.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_0352 regulatory protein, IclR; PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR.


ensembl_gene_id: Calkr_1983
symbol: ADQ41458.1
gene_biotype: protein_coding
description:
  PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: ate:Athe_2388 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding.


ensembl_gene_id: Calkr_1984
symbol: ADQ41459.1
gene_biotype: protein_coding
description:
  PFAM: Xylose isomerase domain-containing protein TIM barrel; KEGG: ate:Athe_2389 xylose isomerase domain protein TIM barrel.


ensembl_gene_id: Calkr_1985
symbol: ADQ41460.1
gene_biotype: protein_coding
description:
  TIGRFAM: ketose-bisphosphate aldolase; KEGG: ate:Athe_2390 ketose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II.


ensembl_gene_id: Calkr_1987
symbol: ADQ41462.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2392 transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR.


ensembl_gene_id: Calkr_1989
symbol: ADQ41463.1
gene_biotype: protein_coding
description:
  PFAM: S-layer domain-containing protein; glycoside hydrolase starch-binding; KEGG: ate:Athe_0609 pullulanase, type I.


ensembl_gene_id: Calkr_1993
symbol: ADQ41466.1
gene_biotype: protein_coding
description:
  TIGRFAM: pullulanase, type I; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; glycoside hydrolase starch-binding; KEGG: ate:Athe_0609 pullulanase, type I; SMART: alpha amylase catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.


ensembl_gene_id: Calkr_1997
symbol: xylA
gene_biotype: protein_coding
description:
  TIGRFAM: xylose isomerase; KEGG: ate:Athe_0603 xylose isomerase; PFAM: Xylose isomerase domain-containing protein TIM barrel; Belongs to the xylose isomerase family.


ensembl_gene_id: Calkr_1998
symbol: ADQ41470.1
gene_biotype: protein_coding
description:
  TIGRFAM: DNA binding domain protein, excisionase family; KEGG: ate:Athe_0602 DNA binding domain protein, excisionase family.


ensembl_gene_id: Calkr_2000
symbol: ADQ41472.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0600 two component transcriptional regulator, AraC family; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; Helix-turn-helix, AraC domain.


ensembl_gene_id: Calkr_2001
symbol: ADQ41473.1
gene_biotype: protein_coding
description:
  Signal transduction histidine kinase, LytS; KEGG: ate:Athe_0599 putative sensor with HAMP domain; PFAM: histidine kinase internal region; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase HAMP region domain protein.


ensembl_gene_id: Calkr_2002
symbol: ADQ41474.1
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: ate:Athe_0598 extracellular solute-binding protein family 1.


ensembl_gene_id: Calkr_2003
symbol: ADQ41475.1
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: ate:Athe_0597 extracellular solute-binding protein family 1.


ensembl_gene_id: Calkr_2004
symbol: ADQ41476.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0596 binding-protein-dependent transport systems inner membrane component; manually curated; PFAM: binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Calkr_2005
symbol: ADQ41477.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ate:Athe_0595 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Calkr_2007
symbol: ADQ41479.1
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 5; S-layer domain-containing protein; KEGG: ate:Athe_0594 cellulase.


ensembl_gene_id: Calkr_2008
symbol: aspS
gene_biotype: protein_coding
description:
  aspartyl-tRNA synthetase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.


ensembl_gene_id: Calkr_2009
symbol: hisS
gene_biotype: protein_coding
description:
  TIGRFAM: histidyl-tRNA synthetase; KEGG: ate:Athe_0592 histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein.


ensembl_gene_id: Calkr_2011
symbol: crcB
gene_biotype: protein_coding
description:
  CrcB protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.


ensembl_gene_id: Calkr_2015
symbol: ADQ41487.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0589 cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein.


ensembl_gene_id: Calkr_2021
symbol: proS
gene_biotype: protein_coding
description:
  prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...]


ensembl_gene_id: Calkr_2024
symbol: ADQ41496.1
gene_biotype: protein_coding
description:
  PFAM: ANTAR domain protein; KEGG: ate:Athe_0569 response regulator receiver and ANTAR domain protein.


ensembl_gene_id: Calkr_2025
symbol: ADQ41497.1
gene_biotype: protein_coding
description:
  TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: ate:Athe_0568 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region.


ensembl_gene_id: Calkr_2026
symbol: xylB-2
gene_biotype: protein_coding
description:
  Xylulokinase; KEGG: ate:Athe_0567 xylulokinase; TIGRFAM: xylulokinase; PFAM: Carbohydrate kinase, FGGY-like.


ensembl_gene_id: Calkr_2027
symbol: ADQ41499.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0566 transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI.


ensembl_gene_id: Calkr_2031
symbol: ADQ41503.1
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.


ensembl_gene_id: Calkr_2032
symbol: ADQ41504.1
gene_biotype: protein_coding
description:
  TIGRFAM: riboflavin synthase, alpha subunit; KEGG: csc:Csac_0793 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein.


ensembl_gene_id: Calkr_2033
symbol: ADQ41505.1
gene_biotype: protein_coding
description:
  PFAM: GTP cyclohydrolase II; 34-dihydroxy-2-butanone 4-phosphate synthase; KEGG: csc:Csac_0792 GTP cyclohydrolase II; In the N-terminal section; belongs to the DHBP synthase family.


ensembl_gene_id: Calkr_2034
symbol: ribH
gene_biotype: protein_coding
description:
  6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.


ensembl_gene_id: Calkr_2035
symbol: ADQ41507.1
gene_biotype: protein_coding
description:
  Peptidoglycan-binding lysin domain; KEGG: ate:Athe_0560 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SH3 type 3 domain protein; SMART: Peptidoglycan-binding LysM.


ensembl_gene_id: Calkr_2037
symbol: ADQ41509.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0559 DNA repair protein RadC; TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; Belongs to the UPF0758 family.


ensembl_gene_id: Calkr_2038
symbol: glgB
gene_biotype: protein_coding
description:
  1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.


ensembl_gene_id: Calkr_2039
symbol: glgC
gene_biotype: protein_coding
description:
  Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.


ensembl_gene_id: Calkr_2040
symbol: ADQ41512.1
gene_biotype: protein_coding
description:
  TIGRFAM: glucose-1-phosphate adenylyltransferase, GlgD subunit; KEGG: ate:Athe_0556 glucose-1-phosphate adenylyltransferase, GlgD subunit; PFAM: Nucleotidyl transferase.


ensembl_gene_id: Calkr_2042
symbol: ADQ41514.1
gene_biotype: protein_coding
description:
  Glycogen/starch/alpha-glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.


ensembl_gene_id: Calkr_2048
symbol: ADQ41519.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0096 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase.


ensembl_gene_id: Calkr_2051
symbol: ADQ41522.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF610 YibQ; KEGG: ate:Athe_2397 protein of unknown function DUF610 YibQ.


ensembl_gene_id: Calkr_2056
symbol: ADQ41526.1
gene_biotype: protein_coding
description:
  Peptidoglycan-binding lysin domain; KEGG: ate:Athe_2402 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.


ensembl_gene_id: Calkr_2072
symbol: ADQ41541.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2416 phage recombination protein Bet; TIGRFAM: phage recombination protein Bet; PFAM: DNA single-strand annealing protein RecT-like.


ensembl_gene_id: Calkr_2076
symbol: ADQ41544.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2423 putative RNA polymerase, sigma 70 family subunit; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein.


ensembl_gene_id: Calkr_2079
symbol: ADQ41547.1
gene_biotype: protein_coding
description:
  PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: csc:Csac_1443 phage integrase family protein; Belongs to the 'phage' integrase family.


ensembl_gene_id: Calkr_2084
symbol: ADQ41552.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2432 DnaB domain protein helicase domain protein; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase.


ensembl_gene_id: Calkr_2086
symbol: ADQ41554.1
gene_biotype: protein_coding
description:
  Helix-turn-helix domain protein; KEGG: ate:Athe_2434 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.


ensembl_gene_id: Calkr_2087
symbol: ADQ41555.1
gene_biotype: protein_coding
description:
  Helix-turn-helix domain protein; KEGG: ate:Athe_2435 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.


ensembl_gene_id: Calkr_2088
symbol: ADQ41556.1
gene_biotype: protein_coding
description:
  PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: ate:Athe_2437 D12 class N6 adenine-specific DNA methyltransferase.


ensembl_gene_id: Calkr_2089
symbol: ADQ41557.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2438 type II site-specific deoxyribonuclease; PFAM: Restriction endonuclease, type II, HaeIII.


ensembl_gene_id: Calkr_2095
symbol: ADQ41563.1
gene_biotype: protein_coding
description:
  PFAM: membrane-bound metal-dependent hydrolase; KEGG: ate:Athe_2446 membrane-bound metal-dependent hydrolase.


ensembl_gene_id: Calkr_2097
symbol: ADQ41564.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_1433 single-strand binding protein; TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n.


ensembl_gene_id: Calkr_2116
symbol: ADQ41582.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_1416 death-on-curing family protein; TIGRFAM: death-on-curing family protein; PFAM: filamentation induced by cAMP protein Fic.


ensembl_gene_id: Calkr_2126
symbol: ADQ41591.1
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: tet:TTHERM_00585500 cyclic nucleotide-binding domain containing protein.


ensembl_gene_id: Calkr_2127
symbol: ADQ41592.1
gene_biotype: protein_coding
description:
  Helix-hairpin-helix motif protein; KEGG: rci:RCIX2536 putative DNA glycosylase; PFAM: helix-hairpin-helix motif; iron-sulfur cluster loop; SMART: HhH-GPD family protein.


ensembl_gene_id: Calkr_2130
symbol: ADQ41595.1
gene_biotype: protein_coding
description:
  KEGG: chl:Chy400_3158 helicase domain protein; PFAM: helicase domain protein; SMART: helicase domain protein.


ensembl_gene_id: Calkr_2131
symbol: ADQ41596.1
gene_biotype: protein_coding
description:
  KEGG: aoe:Clos_1897 DNA-cytosine methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase.


ensembl_gene_id: Calkr_2137
symbol: ADQ41602.1
gene_biotype: protein_coding
description:
  Helix-turn-helix domain protein; KEGG: ate:Athe_2483 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.


ensembl_gene_id: Calkr_2138
symbol: ADQ41603.1
gene_biotype: protein_coding
description:
  Helix-turn-helix domain protein; KEGG: ate:Athe_2484 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.


ensembl_gene_id: Calkr_2159
symbol: ADQ41623.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function DUF2207, membrane; KEGG: tex:Teth514_1844 membrane protein-like protein.


ensembl_gene_id: Calkr_2180
symbol: ADQ41643.1
gene_biotype: protein_coding
description:
  Helix-turn-helix domain protein; KEGG: ate:Athe_2538 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.


ensembl_gene_id: Calkr_2182
symbol: ADQ41645.1
gene_biotype: protein_coding
description:
  PFAM: integrase family protein; KEGG: ate:Athe_2540 integrase family protein; Belongs to the 'phage' integrase family.


ensembl_gene_id: Calkr_2184
symbol: ADQ41647.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2546 transcriptional regulator, AbrB family; TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain-containing protein.


ensembl_gene_id: Calkr_2186
symbol: ADQ41649.1
gene_biotype: protein_coding
description:
  5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.


ensembl_gene_id: Calkr_2187
symbol: ADQ41650.1
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, AraC family; KEGG: csc:Csac_0301 response regulator receiver protein; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; Helix-turn-helix, AraC domain.


ensembl_gene_id: Calkr_2188
symbol: ADQ41651.1
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; KEGG: csc:Csac_0300 histidine kinase internal region; PFAM: histidine kinase internal region; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase HAMP region domain protein.


ensembl_gene_id: Calkr_2189
symbol: ADQ41652.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_0299 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Calkr_2190
symbol: ADQ41653.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_0298 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Calkr_2191
symbol: ADQ41654.1
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: ate:Athe_2554 extracellular solute-binding protein family 1.


ensembl_gene_id: Calkr_2193
symbol: ADQ41656.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2556 transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI.


ensembl_gene_id: Calkr_2194
symbol: ADQ41657.1
gene_biotype: protein_coding
description:
  N-acylglucosamine 2-epimerase; Catalyzes the reversible epimerization of cellobiose to 4-O- beta-D-glucopyranosyl-D-mannose (Glc-Man).


ensembl_gene_id: Calkr_2196
symbol: ADQ41659.1
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ate:Athe_2559 hypothetical protein.


ensembl_gene_id: Calkr_2197
symbol: ADQ41660.1
gene_biotype: protein_coding
description:
  PFAM: ATPase associated with various cellular activities AAA_3; KEGG: ate:Athe_2560 ATPase associated with various cellular activities AAA_3.


ensembl_gene_id: Calkr_2198
symbol: smpB
gene_biotype: protein_coding
description:
  SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]


ensembl_gene_id: Calkr_2203
symbol: ADQ41665.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0462 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.


ensembl_gene_id: Calkr_2205
symbol: ADQ41667.1
gene_biotype: protein_coding
description:
  PFAM: glycosyltransferase 36; carbohydrate binding; glycosyltransferase 36 associated; KEGG: ate:Athe_0460 glycosyltransferase 36.


ensembl_gene_id: Calkr_2206
symbol: ADQ41668.1
gene_biotype: protein_coding
description:
  PFAM: glycosyltransferase 36; carbohydrate binding; glycosyltransferase 36 associated; KEGG: ate:Athe_0459 glycosyltransferase 36.


ensembl_gene_id: Calkr_2207
symbol: ADQ41669.1
gene_biotype: protein_coding
description:
  TIGRFAM: beta-galactosidase; KEGG: ate:Athe_0458 beta-galactosidase; PFAM: glycoside hydrolase family 1.


ensembl_gene_id: Calkr_2208
symbol: ADQ41670.1
gene_biotype: protein_coding
description:
  methylated-DNA/protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.


ensembl_gene_id: Calkr_2209
symbol: ADQ41671.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0455 RNA methyltransferase, TrmA family; TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.


ensembl_gene_id: Calkr_2211
symbol: ADQ41673.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0453 hemerythrin-like metal-binding protein; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein.


ensembl_gene_id: Calkr_2213
symbol: ADQ41675.1
gene_biotype: protein_coding
description:
  TIGRFAM: pullulanase, type I; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; KEGG: ate:Athe_0448 pullulanase, type I; SMART: alpha amylase catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.


ensembl_gene_id: Calkr_2214
symbol: ADQ41676.1
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: ate:Athe_0447 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein.


ensembl_gene_id: Calkr_2215
symbol: ADQ41677.1
gene_biotype: protein_coding
description:
  Ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18.


ensembl_gene_id: Calkr_2217
symbol: ADQ41679.1
gene_biotype: protein_coding
description:
  PFAM: Uncharacterised protein family UPF0079, ATPase; KEGG: ate:Athe_0444 protein of unknown function UPF0079.


ensembl_gene_id: Calkr_2221
symbol: ADQ41683.1
gene_biotype: protein_coding
description:
  PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: ate:Athe_0440 6-pyruvoyl tetrahydropterin synthase and hypothetical protein.


ensembl_gene_id: Calkr_2225
symbol: ADQ41687.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0437 RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily; TIGRFAM: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; sigma-70 region 4 domain protein.


ensembl_gene_id: Calkr_2227
symbol: ADQ41689.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0435 anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS.


ensembl_gene_id: Calkr_2229
symbol: ADQ41691.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0433 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2.


ensembl_gene_id: Calkr_2231
symbol: ADQ41693.1
gene_biotype: protein_coding
description:
  Dipeptidase; KEGG: ate:Athe_0431 dipeptidase; TIGRFAM: dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein.


ensembl_gene_id: Calkr_2232
symbol: ADQ41694.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0430 cell wall hydrolase/autolysin; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin.


ensembl_gene_id: Calkr_2235
symbol: ADQ41697.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0427 sporulation integral membrane protein YtvI; TIGRFAM: sporulation integral membrane protein YtvI; PFAM: protein of unknown function UPF0118.


ensembl_gene_id: Calkr_2238
symbol: ADQ41700.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF710; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.


ensembl_gene_id: Calkr_2242
symbol: ADQ41704.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family with LacI sensor; KEGG: csc:Csac_0722 regulatory protein GntR, HTH; PFAM: regulatory protein GntR HTH; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein GntR HTH.


ensembl_gene_id: Calkr_2245
symbol: ADQ41707.1
gene_biotype: protein_coding
description:
  Cellulose 1,4-beta-cellobiosidase; PFAM: glycoside hydrolase family 10; Carbohydrate-binding CenC domain protein; S-layer domain-containing protein; KEGG: dtu:Dtur_1715 endo-1,4-beta-xylanase; SMART: glycoside hydrolase family 10.


ensembl_gene_id: Calkr_2248
symbol: ADQ41710.1
gene_biotype: protein_coding
description:
  PFAM: iron-containing alcohol dehydrogenase; KEGG: ate:Athe_2244 iron-containing alcohol dehydrogenase.


ensembl_gene_id: Calkr_2254
symbol: cysS
gene_biotype: protein_coding
description:
  TIGRFAM: cysteinyl-tRNA synthetase; KEGG: ate:Athe_2253 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia; Cysteinyl-tRNA synthetase class Ia DALR; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: Calkr_2266
symbol: ADQ41727.1
gene_biotype: protein_coding
description:
  Transposase, IS605 OrfB family; KEGG: cdl:CDR20291_2716 transposase-like protein B; TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB.


ensembl_gene_id: Calkr_2279
symbol: ADQ41733.1
gene_biotype: protein_coding
description:
  TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: slp:Slip_0165 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.


ensembl_gene_id: Calkr_2281
symbol: ADQ41735.1
gene_biotype: protein_coding
description:
  PFAM: polysaccharide biosynthesis protein CapD; Polysaccharide biosynthesis domain protein; KEGG: slp:Slip_0163 polysaccharide biosynthesis protein CapD.


ensembl_gene_id: Calkr_2283
symbol: ADQ41737.1
gene_biotype: protein_coding
description:
  Glutamine--scyllo-inositol transaminase; KEGG: mpd:MCP_0774 putative aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: Calkr_2286
symbol: ADQ41740.1
gene_biotype: protein_coding
description:
  PFAM: polysaccharide biosynthesis protein CapD; KEGG: tte:TTE0668 nucleoside-diphosphate sugar epimerase.


ensembl_gene_id: Calkr_2290
symbol: ADQ41744.1
gene_biotype: protein_coding
description:
  TIGRFAM: lysine 2,3-aminomutase YodO family protein; KEGG: csc:Csac_0232 lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein.


ensembl_gene_id: Calkr_2295
symbol: ADQ41749.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2279 copper ion binding protein; TIGRFAM: copper ion binding protein; PFAM: Heavy metal transport/detoxification protein.


ensembl_gene_id: Calkr_2296
symbol: ADQ41750.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2280 heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; copper ion binding protein; cadmium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase.


ensembl_gene_id: Calkr_2297
symbol: ADQ41751.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF134; KEGG: ate:Athe_2281 protein of unknown function DUF134; Belongs to the UPF0251 family.


ensembl_gene_id: Calkr_2298
symbol: ADQ41752.1
gene_biotype: protein_coding
description:
  PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: ate:Athe_2282 dinitrogenase iron-molybdenum cofactor biosynthesis protein.


ensembl_gene_id: Calkr_2302
symbol: ADQ41755.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2287 CBS domain containing protein; PFAM: CBS domain containing protein; SMART: CBS domain containing protein.


ensembl_gene_id: Calkr_2303
symbol: ADQ41756.1
gene_biotype: protein_coding
description:
  tRNA (adenine-N(1)-)-methyltransferase; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA.


ensembl_gene_id: Calkr_2305
symbol: ADQ41758.1
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 28; KEGG: csc:Csac_0664 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 28 family.


ensembl_gene_id: Calkr_2311
symbol: ADQ41763.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2262 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region.


ensembl_gene_id: Calkr_2319
symbol: ADQ41770.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2298 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; biotin/lipoyl attachment domain-containing protein.


ensembl_gene_id: Calkr_2324
symbol: ADQ41774.1
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; KEGG: csc:Csac_2481 methyltransferase type 11; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.


ensembl_gene_id: Calkr_2325
symbol: ADQ41775.1
gene_biotype: protein_coding
description:
  Sodium ion-translocating decarboxylase, beta subunit; Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD).


ensembl_gene_id: Calkr_2326
symbol: ADQ41776.1
gene_biotype: protein_coding
description:
  PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: csc:Csac_2483 biotin/lipoyl attachment domain-containing protein.


ensembl_gene_id: Calkr_2327
symbol: ADQ41777.1
gene_biotype: protein_coding
description:
  Sodium pump decarboxylase gamma subunit; Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation; Belongs to the OadG family.


ensembl_gene_id: Calkr_2328
symbol: ADQ41778.1
gene_biotype: protein_coding
description:
  PFAM: Conserved carboxylase region; pyruvate carboxyltransferase; KEGG: csc:Csac_2485 hypothetical protein.


ensembl_gene_id: Calkr_2329
symbol: ADQ41779.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2306 methyl-accepting chemotaxis sensory transducer; PFAM: Cache domain protein; chemotaxis sensory transducer; SMART: chemotaxis sensory transducer.


ensembl_gene_id: Calkr_2330
symbol: ADQ41780.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2491 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Calkr_2331
symbol: ADQ41781.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ate:Athe_2309 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Calkr_2332
symbol: ADQ41782.1
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: csc:Csac_2493 extracellular solute-binding protein.


ensembl_gene_id: Calkr_2333
symbol: ADQ41783.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2311 transcriptional regulator, LacI family; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI.


ensembl_gene_id: Calkr_2335
symbol: ADQ41784.1
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: cdl:CDR20291_2491 cdta (adp-ribosyltransferase enzymatic component); cdta (adp-ribosyltransferase enzymatic component).


ensembl_gene_id: Calkr_2337
symbol: dinB
gene_biotype: protein_coding
description:
  DNA-directed DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.


ensembl_gene_id: Calkr_2351
symbol: glmS
gene_biotype: protein_coding
description:
  Glucosamine/fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.


ensembl_gene_id: Calkr_2352
symbol: glmM
gene_biotype: protein_coding
description:
  Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.


ensembl_gene_id: Calkr_2354
symbol: ADQ41797.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_0603 ATPase; PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase.


ensembl_gene_id: Calkr_2357
symbol: ADQ41800.1
gene_biotype: protein_coding
description:
  PFAM: Transketolase domain-containing protein; Transketolase central region; KEGG: ate:Athe_2328 transketolase domain protein.


ensembl_gene_id: Calkr_2358
symbol: ADQ41801.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2329 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Calkr_2359
symbol: ADQ41802.1
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: ate:Athe_2330 extracellular solute-binding protein family 1.


ensembl_gene_id: Calkr_2360
symbol: ADQ41803.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ate:Athe_2331 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Calkr_2361
symbol: ADQ41804.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ate:Athe_2332 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Calkr_2362
symbol: ADQ41805.1
gene_biotype: protein_coding
description:
  PFAM: Xylose isomerase domain-containing protein TIM barrel; KEGG: ate:Athe_2333 xylose isomerase domain protein TIM barrel.


ensembl_gene_id: Calkr_2363
symbol: ADQ41806.1
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: ate:Athe_2334 oxidoreductase domain protein.


ensembl_gene_id: Calkr_2364
symbol: ADQ41807.1
gene_biotype: protein_coding
description:
  PFAM: Xylose isomerase domain-containing protein TIM barrel; KEGG: ate:Athe_2335 xylose isomerase domain protein TIM barrel.


ensembl_gene_id: Calkr_2366
symbol: ADQ41809.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2337 flagellar basal-body rod protein FlgG; TIGRFAM: flagellar basal-body rod protein FlgG; fagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein.


ensembl_gene_id: Calkr_2367
symbol: ADQ41810.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2338 flagellar basal body rod protein; TIGRFAM: fagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein.


ensembl_gene_id: Calkr_2368
symbol: ADQ41811.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2339 rod shape-determining protein MreB; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl.


ensembl_gene_id: Calkr_2369
symbol: ADQ41812.1
gene_biotype: protein_coding
description:
  Carboxyl-terminal protease; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; TIGRFAM: carboxyl-terminal protease; KEGG: ate:Athe_2340 carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; Peptidoglycan-binding domain 1 protein; Belongs to the peptidase S41A family.


ensembl_gene_id: Calkr_2372
symbol: ADQ41815.1
gene_biotype: protein_coding
description:
  TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.


ensembl_gene_id: Calkr_2378
symbol: ADQ41821.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2352 transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.


ensembl_gene_id: Calkr_2383
symbol: ADQ41825.1
gene_biotype: protein_coding
description:
  PFAM: secretion protein HlyD family protein; biotin/lipoyl attachment domain-containing protein; KEGG: csc:Csac_0658 hypothetical protein.


ensembl_gene_id: Calkr_2385
symbol: ADQ41827.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_0655 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.


ensembl_gene_id: Calkr_2388
symbol: ADQ41829.1
gene_biotype: protein_coding
description:
  PFAM: Radical SAM domain protein; KEGG: csc:Csac_0653 arylsulfatase regulator (Fe-S oxidoreductase)-like protein.


ensembl_gene_id: Calkr_2396
symbol: ADQ41835.1
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 3 domain protein; KEGG: csc:Csac_0586 glycoside hydrolase family 3 protein.


ensembl_gene_id: Calkr_2400
symbol: ADQ41837.1
gene_biotype: protein_coding
description:
  L-lactate permease-like protein; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.


ensembl_gene_id: Calkr_2402
symbol: ADQ41839.1
gene_biotype: protein_coding
description:
  PFAM: glutamate synthase alpha subunit domain protein; KEGG: ate:Athe_2357 glutamate synthase alpha subunit domain protein.


ensembl_gene_id: Calkr_2403
symbol: ADQ41840.1
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ate:Athe_2358 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Calkr_2408
symbol: ADQ41844.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2363 calcium-translocating P-type ATPase, PMCA-type; TIGRFAM: calcium-translocating P-type ATPase, PMCA-type; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase.


ensembl_gene_id: Calkr_2409
symbol: ADQ41845.1
gene_biotype: protein_coding
description:
  PFAM: sodium/calcium exchanger membrane region; KEGG: ate:Athe_2364 sodium/calcium exchanger membrane region.


ensembl_gene_id: Calkr_2416
symbol: cas2
gene_biotype: protein_coding
description:
  CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.


ensembl_gene_id: Calkr_2417
symbol: cas1
gene_biotype: protein_coding
description:
  CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.


ensembl_gene_id: Calkr_2418
symbol: ADQ41854.1
gene_biotype: protein_coding
description:
  CRISPR-associated protein Cas4; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family.


ensembl_gene_id: Calkr_2419
symbol: ADQ41855.1
gene_biotype: protein_coding
description:
  TIGRFAM: CRISPR-associated helicase Cas3; CRISPR-associated HD domain protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; KEGG: tmt:Tmath_0024 metal dependent phosphohydrolase; SMART: helicase domain protein; DEAD-like helicase.


ensembl_gene_id: Calkr_2420
symbol: ADQ41856.1
gene_biotype: protein_coding
description:
  TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: tmt:Tmath_0025 CRISPR-associated protein Cas5 family.


ensembl_gene_id: Calkr_2421
symbol: ADQ41857.1
gene_biotype: protein_coding
description:
  TIGRFAM: CRISPR-associated regulatory protein, DevR family; CRISPR-associated autoregulator DevR family; KEGG: tmt:Tmath_0026 CRISPR-associated autoregulator, DevR family.


ensembl_gene_id: Calkr_2422
symbol: ADQ41858.1
gene_biotype: protein_coding
description:
  KEGG: tmt:Tmath_0027 CRISPR-associated CXXC_CXXC protein Cst1; TIGRFAM: CRISPR-associated CXXC_CXXC protein Cst1; PFAM: CRISPR-associated protein, CXXC-CXXC region.


ensembl_gene_id: Calkr_2425
symbol: ADQ41861.1
gene_biotype: protein_coding
description:
  KEGG: tmt:Tmath_0028 CRISPR-associated protein Cas6; TIGRFAM: CRISPR-associated protein Cas6; PFAM: protein of unknown function DUF57.


ensembl_gene_id: Calkr_2427
symbol: ADQ41862.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0118 transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.


ensembl_gene_id: Calkr_2433
symbol: ADQ41868.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: ate:Athe_0107 monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Calkr_2434
symbol: xylG
gene_biotype: protein_coding
description:
  ABC transporter related protein; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family.


ensembl_gene_id: Calkr_2435
symbol: ADQ41870.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_2506 D-xylose ABC transporter, periplasmic substrate-binding protein; TIGRFAM: D-xylose ABC transporter, periplasmic substrate-binding protein; PFAM: periplasmic binding protein/LacI transcriptional regulator.


ensembl_gene_id: Calkr_2437
symbol: ADQ41872.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_2508 signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein.


ensembl_gene_id: Calkr_2438
symbol: ADQ41873.1
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, AraC family; KEGG: csc:Csac_2509 response regulator receiver protein; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; response regulator receiver.


ensembl_gene_id: Calkr_2440
symbol: ADQ41875.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_2452 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.


ensembl_gene_id: Calkr_2444
symbol: ADQ41879.1
gene_biotype: protein_coding
description:
  KEGG: amr:AM1_5759 glycosyl transferase, WecB/TagA/CpsF family protein; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; Belongs to the glycosyltransferase 26 family.


ensembl_gene_id: Calkr_2445
symbol: ADQ41880.1
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; KEGG: mfe:Mefer_0524 NAD-dependent epimerase/dehydratase.


ensembl_gene_id: Calkr_2446
symbol: ADQ41881.1
gene_biotype: protein_coding
description:
  TIGRFAM: nucleotide sugar dehydrogenase; KEGG: msv:Mesil_2750 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase.


ensembl_gene_id: Calkr_2447
symbol: ADQ41882.1
gene_biotype: protein_coding
description:
  KEGG: cpr:CPR_0584 glycosyltransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.


ensembl_gene_id: Calkr_2448
symbol: fcl
gene_biotype: protein_coding
description:
  NAD-dependent epimerase/dehydratase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.


ensembl_gene_id: Calkr_2449
symbol: gmd
gene_biotype: protein_coding
description:
  GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.


ensembl_gene_id: Calkr_2450
symbol: ADQ41885.1
gene_biotype: protein_coding
description:
  PFAM: S-layer domain-containing protein; KEGG: pjd:Pjdr2_4730 arabinogalactan endo-1,4-beta-galactosidase.


ensembl_gene_id: Calkr_2451
symbol: ADQ41886.1
gene_biotype: protein_coding
description:
  Capsular exopolysaccharide family; KEGG: clj:CLJU_c05160 putative exopolysaccharide biosynthesis protein; TIGRFAM: capsular exopolysaccharide family.


ensembl_gene_id: Calkr_2452
symbol: ADQ41887.1
gene_biotype: protein_coding
description:
  PFAM: lipopolysaccharide biosynthesis protein; KEGG: tte:TTE0733 capsular polysaccharide biosynthesis homolog YwqC.


ensembl_gene_id: Calkr_2455
symbol: ADQ41890.1
gene_biotype: protein_coding
description:
  PFAM: type 3a cellulose-binding domain protein; FG-GAP repeat protein; KEGG: ate:Athe_1853 cellulose 1,4-beta-cellobiosidase.


ensembl_gene_id: Calkr_2459
symbol: ADQ41894.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0081 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein.


ensembl_gene_id: Calkr_2460
symbol: ADQ41895.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0080 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver.


ensembl_gene_id: Calkr_2462
symbol: pyrG
gene_biotype: protein_coding
description:
  CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.


ensembl_gene_id: Calkr_2463
symbol: ADQ41898.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0077 S-layer domain protein; PFAM: transglutaminase domain-containing protein; S-layer domain-containing protein; SMART: transglutaminase domain-containing protein.


ensembl_gene_id: Calkr_2465
symbol: ADQ41900.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0064 Appr-1-p processing domain protein; PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein.


ensembl_gene_id: Calkr_2470
symbol: ADQ41904.1
gene_biotype: protein_coding
description:
  TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: csc:Csac_2566 undecaprenyl-phosphate galactose phosphotransferase; PFAM: sugar transferase.


ensembl_gene_id: Calkr_2477
symbol: ADQ41911.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF95 transmembrane; KEGG: ate:Athe_0049 protein of unknown function DUF95 transmembrane.


ensembl_gene_id: Calkr_2479
symbol: purA
gene_biotype: protein_coding
description:
  Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.


ensembl_gene_id: Calkr_2480
symbol: ADQ41914.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0045 von Willebrand factor type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A.


ensembl_gene_id: Calkr_2481
symbol: ADQ41915.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0044 von Willebrand factor type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A.


ensembl_gene_id: Calkr_2483
symbol: ADQ41917.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0042 ATPase associated with various cellular activities AAA_3; PFAM: ATPase associated with various cellular activities AAA_3; SMART: AAA ATPase.


ensembl_gene_id: Calkr_2488
symbol: ADQ41922.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_0037 proton-coupled thiamine transporter YuaJ; TIGRFAM: proton-coupled thiamine transporter YuaJ; PFAM: thiamine transporter YuaJ.


ensembl_gene_id: Calkr_2490
symbol: ADQ41924.1
gene_biotype: protein_coding
description:
  SNF2-related protein; KEGG: ate:Athe_0035 non-specific serine/threonine protein kinase; PFAM: SNF2-related protein; SNF2 helicase associated domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.


ensembl_gene_id: Calkr_2497
symbol: ADQ41931.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_0015 type III restriction enzyme, res subunit; PFAM: type III restriction protein res subunit; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.


ensembl_gene_id: Calkr_2499
symbol: ADQ41933.1
gene_biotype: protein_coding
description:
  Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.


ensembl_gene_id: Calkr_2500
symbol: ADQ41934.1
gene_biotype: protein_coding
description:
  LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response); Belongs to the helicase family. UvrD subfamily.


ensembl_gene_id: Calkr_2515
symbol: ADQ41944.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; KEGG: csc:Csac_0497 helix-turn-helix domain-containing protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Calkr_2516
symbol: queF
gene_biotype: protein_coding
description:
  7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily.


ensembl_gene_id: Calkr_2520
symbol: ADQ41949.1
gene_biotype: protein_coding
description:
  Radical SAM domain protein; KEGG: ate:Athe_2647 biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: Calkr_2521
symbol: ADQ41950.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2648 penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase.


ensembl_gene_id: Calkr_2522
symbol: ADQ41951.1
gene_biotype: protein_coding
description:
  Cellulase; KEGG: csc:Csac_1076 glycoside hydrolase family protein; PFAM: glycoside hydrolase family 9; type 3a cellulose-binding domain protein.


ensembl_gene_id: Calkr_2533
symbol: ADQ41962.1
gene_biotype: protein_coding
description:
  TIGRFAM: CRISPR-associated HD domain protein; CRISPR-associated helicase Cas3; PFAM: helicase domain protein; KEGG: ate:Athe_2661 CRISPR-associated helicase Cas3; SMART: helicase domain protein; DEAD-like helicase.


ensembl_gene_id: Calkr_2534
symbol: ADQ41963.1
gene_biotype: protein_coding
description:
  TIGRFAM: CRISPR-associated protein Cas5, Hmari subtype; CRISPR-associated protein Cas5; KEGG: csc:Csac_0058 CRISPR-associated Cas5 family protein.


ensembl_gene_id: Calkr_2535
symbol: ADQ41964.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_0057 CRISPR-associated Csh2 family protein; TIGRFAM: CRISPR-associated protein, Csh2 family; CRISPR-associated protein, CT1132 family; PFAM: CRISPR-associated protein TM1801.


ensembl_gene_id: Calkr_2536
symbol: ADQ41965.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_0056 CRISPR-associated Csh1 family protein; TIGRFAM: CRISPR-associated protein, Csh1 family; PFAM: CRISPR-associated protein TM1802.


ensembl_gene_id: Calkr_2546
symbol: ADQ41971.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2700 CRISPR-associated RAMP protein, Csm5 family; TIGRFAM: CRISPR-associated RAMP protein, Csm5 family; PFAM: protein of unknown function DUF324.


ensembl_gene_id: Calkr_2547
symbol: ADQ41972.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_0078 CRISPR-associated RAMP Csm4 family protein; TIGRFAM: CRISPR-associated RAMP protein, Csm4 family; PFAM: protein of unknown function DUF324.


ensembl_gene_id: Calkr_2548
symbol: ADQ41973.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_0077 CRISPR-associated RAMP Csm3 family protein; TIGRFAM: CRISPR-associated RAMP protein, Csm3 family; PFAM: protein of unknown function DUF324.


ensembl_gene_id: Calkr_2549
symbol: ADQ41974.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_0076 CRISPR-associated Csm2 family protein; TIGRFAM: CRISPR-associated protein, Csm2 family; PFAM: CRISPR-associated protein TM1810 domain protein.


ensembl_gene_id: Calkr_2550
symbol: ADQ41975.1
gene_biotype: protein_coding
description:
  TIGRFAM: CRISPR-associated protein, Csm1 family; KEGG: csc:Csac_0075 CRISPR-associated Csm1 family protein.


ensembl_gene_id: Calkr_2552
symbol: ADQ41977.1
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_0043 CRISPR-associated DxTHG family protein; TIGRFAM: CRISPR-associated protein, MJ1666 family; PFAM: CRISPR-associated protein DxTHG.


ensembl_gene_id: Calkr_2561
symbol: ADQ41986.1
gene_biotype: protein_coding
description:
  TIGRFAM: CRISPR-associated protein, Csx11 family; KEGG: tit:Thit_1355 CRISPR-associated protein, Csx11 family.


ensembl_gene_id: Calkr_2565
symbol: recD2
gene_biotype: protein_coding
description:
  Helicase, RecD/TraA family; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.


ensembl_gene_id: Calkr_2570
symbol: ADQ41995.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2731 stage V sporulation protein AC; TIGRFAM: stage V sporulation protein AC; PFAM: SpoVA protein.


ensembl_gene_id: Calkr_2571
symbol: ADQ41996.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2732 stage V sporulation protein AD; TIGRFAM: stage V sporulation protein AD; PFAM: Stage V sporulation AD family protein.


ensembl_gene_id: Calkr_2572
symbol: ADQ41997.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2733 stage V sporulation protein AE; TIGRFAM: stage V sporulation protein AE; PFAM: SpoVA protein.


ensembl_gene_id: Calkr_2579
symbol: ADQ42004.1
gene_biotype: protein_coding
description:
  KEGG: tpd:Teth39_0122 CRISPR-associated Csh1 family protein; TIGRFAM: CRISPR-associated protein, Csh1 family; CRISPR-associated protein, TM1802 family; PFAM: CRISPR-associated protein TM1802.


ensembl_gene_id: Calkr_2580
symbol: ADQ42005.1
gene_biotype: protein_coding
description:
  KEGG: tit:Thit_2286 CRISPR-associated protein, Csh2 family; TIGRFAM: CRISPR-associated protein, Csh2 family; CRISPR-associated protein, CT1132 family; PFAM: CRISPR-associated protein TM1801.


ensembl_gene_id: Calkr_2581
symbol: ADQ42006.1
gene_biotype: protein_coding
description:
  TIGRFAM: CRISPR-associated protein Cas5, Hmari subtype; CRISPR-associated protein Cas5; KEGG: dtu:Dtur_0622 CRISPR-associated protein Cas5, Hmari subtype.


ensembl_gene_id: Calkr_2582
symbol: ADQ42007.1
gene_biotype: protein_coding
description:
  TIGRFAM: CRISPR-associated HD domain protein; CRISPR-associated helicase Cas3; PFAM: helicase domain protein; KEGG: dtu:Dtur_0621 CRISPR-associated helicase Cas3; SMART: helicase domain protein; DEAD-like helicase.


ensembl_gene_id: Calkr_2595
symbol: ADQ42018.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF324; KEGG: cth:Cthe_2050 CRISPR-associated Csm3 family protein.


ensembl_gene_id: Calkr_2596
symbol: ADQ42019.1
gene_biotype: protein_coding
description:
  KEGG: cth:Cthe_2051 CRISPR-associated Csm3 family protein; TIGRFAM: CRISPR-associated RAMP protein, SSO1426 family; PFAM: protein of unknown function DUF324.


ensembl_gene_id: Calkr_2609
symbol: ADQ42032.1
gene_biotype: protein_coding
description:
  Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; extracellular solute-binding protein family 3; PAS fold domain protein; PAS fold-3 domain protein; KEGG: ate:Athe_2740 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; extracellular solute-binding protein family 3; PAS domain containing protein; PAC repeat-containing protein.


ensembl_gene_id: Calkr_2613
symbol: ADQ42036.1
gene_biotype: protein_coding
description:
  TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; KEGG: ate:Athe_2746 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region.


ensembl_gene_id: Calkr_2616
symbol: ADQ42039.1
gene_biotype: protein_coding
description:
  TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation protein E; PAS fold-4 domain protein; KEGG: ate:Athe_2749 putative PAS/PAC sensor protein; SMART: protein phosphatase 2C domain protein.


ensembl_gene_id: Calkr_2618
symbol: ADQ42041.1
gene_biotype: protein_coding
description:
  TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; helix-turn-helix domain protein; KEGG: ate:Athe_2751 ParB-like partition protein; SMART: ParB domain protein nuclease; Belongs to the ParB family.


ensembl_gene_id: Calkr_2621
symbol: ADQ42044.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2753 phosphate binding protein; TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1.


ensembl_gene_id: Calkr_2623
symbol: ADQ42046.1
gene_biotype: protein_coding
description:
  TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: ate:Athe_2755 ParB-like partition protein; SMART: ParB domain protein nuclease; Belongs to the ParB family.


ensembl_gene_id: Calkr_2624
symbol: rsmG
gene_biotype: protein_coding
description:
  Methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.


ensembl_gene_id: Calkr_2625
symbol: mnmG
gene_biotype: protein_coding
description:
  Glucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.


ensembl_gene_id: Calkr_2626
symbol: mnmE
gene_biotype: protein_coding
description:
  tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.


ensembl_gene_id: Calkr_2627
symbol: ADQ42050.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2759 single-stranded nucleic acid binding R3H domain protein; PFAM: single-stranded nucleic acid binding R3H domain-containing protein; SMART: single-stranded nucleic acid binding R3H domain-containing protein.


ensembl_gene_id: Calkr_2628
symbol: ADQ42051.1
gene_biotype: protein_coding
description:
  Membrane protein insertase, YidC/Oxa1 family; KEGG: ate:Athe_2760 60 kDa inner membrane insertion protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family; PFAM: 60 kDa inner membrane insertion protein.


ensembl_gene_id: Calkr_2629
symbol: ADQ42052.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.


ensembl_gene_id: Calkr_2630
symbol: rnpA
gene_biotype: protein_coding
description:
  Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.


ensembl_gene_id: Calkr_2631
symbol: rpmH
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2763 50S ribosomal protein L34; TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.


ensembl_gene_id: Calkr_2633
symbol: ADQ42056.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2766 spore germination protein; TIGRFAM: spore germination protein; PFAM: Spore germination protein.


ensembl_gene_id: Calkr_2634
symbol: ADQ42057.1
gene_biotype: protein_coding
description:
  KEGG: ate:Athe_2767 germination protein, Ger(X)C family; TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein.


