# geneInfo

ensembl_gene_id: Rpdx1_2764
symbol: plsX
gene_biotype: protein_coding
description:
  Fatty acid/phospholipid synthesis protein PlsX; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.


ensembl_gene_id: Rpdx1_2766
symbol: ADU44350.1
gene_biotype: protein_coding
description:
  PFAM: Ubiquinol-cytochrome c chaperone/UPF0174; KEGG: nha:Nham_1583 ubiquinol-cytochrome c chaperone.


ensembl_gene_id: Rpdx1_2772
symbol: hppA
gene_biotype: protein_coding
description:
  V-type H(+)-translocating pyrophosphatase; Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force.


ensembl_gene_id: Rpdx1_2773
symbol: thiL
gene_biotype: protein_coding
description:
  Thiamine-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.


ensembl_gene_id: Rpdx1_2774
symbol: nusB
gene_biotype: protein_coding
description:
  NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.


ensembl_gene_id: Rpdx1_2775
symbol: ribH
gene_biotype: protein_coding
description:
  6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.


ensembl_gene_id: Rpdx1_2776
symbol: ADU44359.1
gene_biotype: protein_coding
description:
  TIGRFAM: riboflavin synthase, alpha subunit; KEGG: bja:bll5030 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein.


ensembl_gene_id: Rpdx1_2777
symbol: ADU44360.1
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.


ensembl_gene_id: Rpdx1_2778
symbol: nrdR
gene_biotype: protein_coding
description:
  ATP-cone domain protein; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.


ensembl_gene_id: Rpdx1_2780
symbol: ADU44363.1
gene_biotype: protein_coding
description:
  PFAM: Rv0623 family protein transcription factor; KEGG: mno:Mnod_8286 Rv0623 family protein transcription factor.


ensembl_gene_id: Rpdx1_2784
symbol: ADU44367.1
gene_biotype: protein_coding
description:
  PFAM: Glutathione S-transferase domain; KEGG: nha:Nham_2099 putative glutathione S-transferase YghU.


ensembl_gene_id: Rpdx1_2789
symbol: ADU44372.1
gene_biotype: protein_coding
description:
  Regulatory protein MarR; KEGG: bbt:BBta_4653 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.


ensembl_gene_id: Rpdx1_2792
symbol: ADU44375.1
gene_biotype: protein_coding
description:
  Porphobilinogen synthase; KEGG: bra:BRADO4436 delta-aminolevulinic acid dehydratase; PFAM: delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.


ensembl_gene_id: Rpdx1_2794
symbol: bpt
gene_biotype: protein_coding
description:
  Arginine-tRNA-protein transferase domain protein; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily.


ensembl_gene_id: Rpdx1_2795
symbol: ADU44378.1
gene_biotype: protein_coding
description:
  PFAM: secretion protein HlyD family protein; KEGG: rce:RC1_2575 HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Rpdx1_2797
symbol: ADU44380.1
gene_biotype: protein_coding
description:
  PFAM: Fusaric acid resistance protein conserved region; KEGG: rce:RC1_2577 fusaric acid resistance protein, putative.


ensembl_gene_id: Rpdx1_2798
symbol: ADU44381.1
gene_biotype: protein_coding
description:
  KEGG: rce:RC1_2578 transcriptional regulator, AraC family protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Rpdx1_2799
symbol: mntH
gene_biotype: protein_coding
description:
  Mn2+/Fe2+ transporter, NRAMP family; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family.


ensembl_gene_id: Rpdx1_2802
symbol: parC
gene_biotype: protein_coding
description:
  DNA topoisomerase IV, A subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.


ensembl_gene_id: Rpdx1_2809
symbol: era
gene_biotype: protein_coding
description:
  GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.


ensembl_gene_id: Rpdx1_2810
symbol: rnc
gene_biotype: protein_coding
description:
  Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.


ensembl_gene_id: Rpdx1_2811
symbol: ADU44394.1
gene_biotype: protein_coding
description:
  TIGRFAM: signal peptidase I; KEGG: nwi:Nwi_1919 peptidase S26A, signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; Belongs to the peptidase S26 family.


ensembl_gene_id: Rpdx1_2812
symbol: acpS
gene_biotype: protein_coding
description:
  Holo-acyl-carrier-protein synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.


ensembl_gene_id: Rpdx1_2813
symbol: pdxJ
gene_biotype: protein_coding
description:
  Pyridoxal phosphate biosynthetic protein PdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.


ensembl_gene_id: Rpdx1_2814
symbol: ADU44397.1
gene_biotype: protein_coding
description:
  (p)ppGpp synthetase I, SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.


ensembl_gene_id: Rpdx1_2815
symbol: rpoZ
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.


ensembl_gene_id: Rpdx1_2817
symbol: ADU44400.1
gene_biotype: protein_coding
description:
  PFAM: Uracil-DNA glycosylase superfamily; KEGG: nha:Nham_2258 uracil-DNA glycosylase superfamily protein.


ensembl_gene_id: Rpdx1_2819
symbol: smpB
gene_biotype: protein_coding
description:
  SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]


ensembl_gene_id: Rpdx1_2820
symbol: mscL
gene_biotype: protein_coding
description:
  Large conductance mechanosensitive channel protein; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.


ensembl_gene_id: Rpdx1_2824
symbol: ADU44407.1
gene_biotype: protein_coding
description:
  Allophanate hydrolase subunit 1; KEGG: nha:Nham_2040 hypothetical protein; PFAM: Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 1.


ensembl_gene_id: Rpdx1_2825
symbol: ADU44408.1
gene_biotype: protein_coding
description:
  TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: nha:Nham_2041 allophanate hydrolase subunit 2; SMART: Allophanate hydrolase subunit 2.


ensembl_gene_id: Rpdx1_2826
symbol: pxpA
gene_biotype: protein_coding
description:
  LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.


ensembl_gene_id: Rpdx1_2828
symbol: ADU44411.1
gene_biotype: protein_coding
description:
  ABC transporter related protein; KEGG: mms:mma_3084 sulfonate/nitrate transport system ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_2829
symbol: ADU44412.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mms:mma_3085 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.


ensembl_gene_id: Rpdx1_2830
symbol: ADU44413.1
gene_biotype: protein_coding
description:
  SMART: extracellular solute-binding protein family 3; KEGG: mms:mma_3086 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic component.


ensembl_gene_id: Rpdx1_2831
symbol: ADU44414.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bbt:BBta_1913 LysR family transcriptional regulator.


ensembl_gene_id: Rpdx1_2832
symbol: rimO
gene_biotype: protein_coding
description:
  MiaB-like tRNA modifying enzyme YliG; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.


ensembl_gene_id: Rpdx1_2833
symbol: ADU44416.1
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bja:bll4583 quinone oxidoreductase.


ensembl_gene_id: Rpdx1_2835
symbol: ADU44418.1
gene_biotype: protein_coding
description:
  Phosphatidylcholine synthase; Condenses choline with CDP-diglyceride to produce phosphatidylcholine and CMP; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: Rpdx1_2836
symbol: ADU44419.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr4586 2-octaprenyl-6-methoxyphenyl hydroxylase; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein.


ensembl_gene_id: Rpdx1_2838
symbol: ADU44421.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr4588 hypothetical protein; TIGRFAM: hemimethylated DNA binding protein; PFAM: Hemimethylated DNA-binding region.


ensembl_gene_id: Rpdx1_2840
symbol: ADU44423.1
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: nwi:Nwi_1510 extracellular solute-binding protein.


ensembl_gene_id: Rpdx1_2843
symbol: mfd
gene_biotype: protein_coding
description:
  Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.


ensembl_gene_id: Rpdx1_2845
symbol: ADU44428.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_2055 DEAD/DEAH box helicase-like; PFAM: DEAD/DEAH box helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.


ensembl_gene_id: Rpdx1_2847
symbol: glmS
gene_biotype: protein_coding
description:
  Glucosamine/fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.


ensembl_gene_id: Rpdx1_2848
symbol: glmU
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine pyrophosphorylase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain.


ensembl_gene_id: Rpdx1_2853
symbol: ADU44436.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_1779 glycosyl transferase family protein; manually curated; PFAM: glycosyl transferase family 2.


ensembl_gene_id: Rpdx1_2854
symbol: ADU44437.1
gene_biotype: protein_coding
description:
  Antenna complex alpha/beta subunit; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.


ensembl_gene_id: Rpdx1_2863
symbol: crcB-3
gene_biotype: protein_coding
description:
  Protein of unknown function DUF190; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.


ensembl_gene_id: Rpdx1_2865
symbol: tgt
gene_biotype: protein_coding
description:
  Queuine tRNA-ribosyltransferase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form t [...]


ensembl_gene_id: Rpdx1_2866
symbol: queA
gene_biotype: protein_coding
description:
  S-adenosylmethionine/tRNA-ribosyltransferase- isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).


ensembl_gene_id: Rpdx1_2867
symbol: ADU44450.1
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase cyclophilin type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.


ensembl_gene_id: Rpdx1_2870
symbol: coaD
gene_biotype: protein_coding
description:
  Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.


ensembl_gene_id: Rpdx1_2872
symbol: gyrA
gene_biotype: protein_coding
description:
  DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: Rpdx1_2873
symbol: hflX
gene_biotype: protein_coding
description:
  GTP-binding proten HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.


ensembl_gene_id: Rpdx1_2874
symbol: hfq
gene_biotype: protein_coding
description:
  RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.


ensembl_gene_id: Rpdx1_2876
symbol: ADU44459.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_4072 two component, sigma54 specific, fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase.


ensembl_gene_id: Rpdx1_2877
symbol: ADU44460.1
gene_biotype: protein_coding
description:
  Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: oca:OCAR_6097 nitrogen regulation protein NtrY; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; PAS domain containing protein.


ensembl_gene_id: Rpdx1_2878
symbol: ntrC
gene_biotype: protein_coding
description:
  Two component, sigma54 specific, transcriptional regulator, Fis family; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.


ensembl_gene_id: Rpdx1_2879
symbol: ADU44462.1
gene_biotype: protein_coding
description:
  Signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; KEGG: bra:BRADO3867 nitrogen regulation protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein.


ensembl_gene_id: Rpdx1_2880
symbol: ADU44463.1
gene_biotype: protein_coding
description:
  TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.


ensembl_gene_id: Rpdx1_2881
symbol: ispDF
gene_biotype: protein_coding
description:
  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D- erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C- methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF).


ensembl_gene_id: Rpdx1_2884
symbol: lipA
gene_biotype: protein_coding
description:
  Lipoic acid synthetase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.


ensembl_gene_id: Rpdx1_2885
symbol: ADU44468.1
gene_biotype: protein_coding
description:
  KEGG: nwi:Nwi_1438 3-methyladenine DNA glycosylase; TIGRFAM: DNA-3-methyladenine glycosylase; PFAM: methylpurine-DNA glycosylase (MPG); Belongs to the DNA glycosylase MPG family.


ensembl_gene_id: Rpdx1_2887
symbol: valS
gene_biotype: protein_coding
description:
  valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.


ensembl_gene_id: Rpdx1_2889
symbol: ADU44472.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_1826 type I secretion outer membrane protein, TolC; TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein.


ensembl_gene_id: Rpdx1_2890
symbol: ADU44473.1
gene_biotype: protein_coding
description:
  PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: nha:Nham_1787 protein-L-isoaspartate(D-aspartate) O-methyltransferase.


ensembl_gene_id: Rpdx1_2896
symbol: ADU44479.1
gene_biotype: protein_coding
description:
  PFAM: acriflavin resistance protein; KEGG: nha:Nham_2063 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: Rpdx1_2897
symbol: ADU44480.1
gene_biotype: protein_coding
description:
  PFAM: acriflavin resistance protein; KEGG: bja:blr4457 AcrB/AcrD/AcrF family protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: Rpdx1_2898
symbol: ADU44481.1
gene_biotype: protein_coding
description:
  Efflux transporter, RND family, MFP subunit; KEGG: bbt:BBta_3932 multidrug resistance protein MdtA precursor; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Rpdx1_2899
symbol: ADU44482.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_2066 RND efflux system, outer membrane lipoprotein, NodT; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein.


ensembl_gene_id: Rpdx1_2902
symbol: ADU44485.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_3928 putative cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase.


ensembl_gene_id: Rpdx1_2903
symbol: ADU44486.1
gene_biotype: protein_coding
description:
  PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: oca:OCAR_6061 cysteine synthase A.


ensembl_gene_id: Rpdx1_2905
symbol: ADU44488.1
gene_biotype: protein_coding
description:
  ABC transporter related protein; KEGG: bra:BRADO3910 putative amino acid transport protein, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_2906
symbol: ADU44489.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_2069 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Rpdx1_2907
symbol: ADU44490.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_2070 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Rpdx1_2908
symbol: ADU44491.1
gene_biotype: protein_coding
description:
  TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: bra:BRADO3913 putative amino-acid ABC transporter, substrate-binding protein; SMART: extracellular solute-binding protein family 3; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: Rpdx1_2909
symbol: ADU44492.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO3914 cystathionine beta-lyase, PLP-dependent (beta-cystathionase); TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein.


ensembl_gene_id: Rpdx1_2912
symbol: ADU44495.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr4441 hypothetical protein; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related.


ensembl_gene_id: Rpdx1_2914
symbol: ADU44497.1
gene_biotype: protein_coding
description:
  TIGRFAM: penicillin-binding protein 1C; KEGG: nha:Nham_2077 penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein.


ensembl_gene_id: Rpdx1_2915
symbol: ADU44498.1
gene_biotype: protein_coding
description:
  PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: nha:Nham_2078 alpha-2-macroglobulin-like.


ensembl_gene_id: Rpdx1_2924
symbol: ADU44507.1
gene_biotype: protein_coding
description:
  TIGRFAM: pentapeptide MXKDX repeat protein; KEGG: dac:Daci_3133 pentapeptide MXKDX repeat-containing protein.


ensembl_gene_id: Rpdx1_2926
symbol: ADU44509.1
gene_biotype: protein_coding
description:
  PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; KEGG: bja:blr4421 3-methylcrotonyl-CoA carboxylase alpha subunit.


ensembl_gene_id: Rpdx1_2928
symbol: ADU44511.1
gene_biotype: protein_coding
description:
  PFAM: ETC complex I subunit conserved region; KEGG: bra:BRADO3676 putative ETC complex I subunit region protein (fragment).


ensembl_gene_id: Rpdx1_2975
symbol: ADU44556.1
gene_biotype: protein_coding
description:
  5'-3' exonuclease, SAM-fold domain; KEGG: apb:SAR116_0390 putative phage exonuclease; PFAM: 5'-3' exonuclease, SAM-fold domain; SMART: 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2.


ensembl_gene_id: Rpdx1_2978
symbol: ADU44559.1
gene_biotype: protein_coding
description:
  KEGG: ppu:PP_2273 DNA polymerase; PFAM: DNA-directed DNA polymerase; SMART: DNA-directed DNA polymerase.


ensembl_gene_id: Rpdx1_2992
symbol: ADU44573.1
gene_biotype: protein_coding
description:
  KEGG: ppu:PP_2266 DNA-directed RNA polymerase, bacteriophage and mitochondrial type; PFAM: DNA-directed RNA polymerase bacteriophage type.


ensembl_gene_id: Rpdx1_2994
symbol: ADU44575.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr4410 cold shock protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein.


ensembl_gene_id: Rpdx1_2995
symbol: cobB
gene_biotype: protein_coding
description:
  Silent information regulator protein Sir2; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily.


ensembl_gene_id: Rpdx1_2996
symbol: ADU44577.1
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nha:Nham_2145 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Rpdx1_2998
symbol: ADU44579.1
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: cac:CAC0259 fusion NifN/K+nifB (NifN-nitrogenase iron molybdenum cofactor biosinthesis protein, NifK-nitrogenase molibdenum-iron protein beta chain, NifB-nitrogenase iron-molibdenum cofactor biosynthesis protein).


ensembl_gene_id: Rpdx1_3001
symbol: ADU44582.1
gene_biotype: protein_coding
description:
  TIGRFAM: lysine 2,3-aminomutase YodO family protein; KEGG: nha:Nham_2300 hypothetical protein; PFAM: Radical SAM domain protein.


ensembl_gene_id: Rpdx1_3002
symbol: ADU44583.1
gene_biotype: protein_coding
description:
  lysyl-tRNA synthetase-related protein GenX; KEGG: bbt:BBta_4013 putative lysyl-tRNA synthetase (lysine--tRNA ligase); TIGRFAM: lysyl-tRNA synthetase-related protein GenX; PFAM: tRNA synthetase class II (D K and N).


ensembl_gene_id: Rpdx1_3003
symbol: efp
gene_biotype: protein_coding
description:
  Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.


ensembl_gene_id: Rpdx1_3004
symbol: ADU44585.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_5358 putative lipid kinase; PFAM: diacylglycerol kinase catalytic region; SMART: diacylglycerol kinase catalytic region.


ensembl_gene_id: Rpdx1_3005
symbol: ADU44586.1
gene_biotype: protein_coding
description:
  Lytic murein transglycosylase; KEGG: bbt:BBta_4006 putative membrane-bound lytic transglycosylase precursor protein, putative signal peptide; TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein.


ensembl_gene_id: Rpdx1_3008
symbol: ADU44589.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_4000 exonuclease RecJ; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1.


ensembl_gene_id: Rpdx1_3009
symbol: ADU44590.1
gene_biotype: protein_coding
description:
  Haloacid dehalogenase, type II; KEGG: bja:blr4364 putative haloacid dehalogenase; TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase.


ensembl_gene_id: Rpdx1_3011
symbol: ADU44592.1
gene_biotype: protein_coding
description:
  TIGRFAM: fructose-1,6-bisphosphatase, class II; KEGG: oca:OCAR_6017 fructose 1,6-bisphosphatase II; PFAM: GlpX family protein.


ensembl_gene_id: Rpdx1_3012
symbol: ADU44593.1
gene_biotype: protein_coding
description:
  PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; amino acid-binding ACT domain protein; KEGG: bbt:BBta_3996 homoserine dehydrogenase.


ensembl_gene_id: Rpdx1_3015
symbol: ADU44596.1
gene_biotype: protein_coding
description:
  poly(R)-hydroxyalkanoic acid synthase, class I; KEGG: bra:BRADO3568 poly-beta-hydroxybutyrate polymerase; TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: Poly-beta-hydroxybutyrate polymerase domain protein; alpha/beta hydrolase fold.


ensembl_gene_id: Rpdx1_3018
symbol: ADU44599.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pnu:Pnuc_1181 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Rpdx1_3020
symbol: ADU44601.1
gene_biotype: protein_coding
description:
  KEGG: bph:Bphy_6303 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.


ensembl_gene_id: Rpdx1_3022
symbol: ADU44603.1
gene_biotype: protein_coding
description:
  KEGG: azc:AZC_3721 elongator protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: Rpdx1_3024
symbol: argC
gene_biotype: protein_coding
description:
  N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 2 subfamily.


ensembl_gene_id: Rpdx1_3030
symbol: parE
gene_biotype: protein_coding
description:
  DNA topoisomerase IV, B subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily.


ensembl_gene_id: Rpdx1_3034
symbol: ADU44615.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO2559 putative methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer.


ensembl_gene_id: Rpdx1_3036
symbol: ADU44617.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll4348 ATP-dependent RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; Belongs to the DEAD box helicase family.


ensembl_gene_id: Rpdx1_3037
symbol: ADU44618.1
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bja:bll4347 hypothetical protein; SMART: GGDEF domain containing protein.


ensembl_gene_id: Rpdx1_3042
symbol: ADU44623.1
gene_biotype: protein_coding
description:
  KEGG: nwi:Nwi_1659 HesB/YadR/YfhF; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; Belongs to the HesB/IscA family.


ensembl_gene_id: Rpdx1_3043
symbol: ADU44624.1
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: csa:Csal_3007 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Rpdx1_3044
symbol: ADU44625.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr4343 hypothetical protein; TIGRFAM: FeS assembly SUF system protein; PFAM: protein of unknown function DUF59.


ensembl_gene_id: Rpdx1_3045
symbol: ADU44626.1
gene_biotype: protein_coding
description:
  Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.


ensembl_gene_id: Rpdx1_3046
symbol: ADU44627.1
gene_biotype: protein_coding
description:
  FeS assembly protein SufD; KEGG: bra:BRADO3543 SufD, needed for FhuF Fe-S center production/stability; TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein.


ensembl_gene_id: Rpdx1_3047
symbol: ADU44628.1
gene_biotype: protein_coding
description:
  TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; KEGG: bra:BRADO3542 SufC, related to ABC transporter associated with Fe-S cluster assembly ATP-binding protein; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_3048
symbol: ADU44629.1
gene_biotype: protein_coding
description:
  FeS assembly protein SufB; KEGG: bra:BRADO3540 cysteine desulfurase activator complex subunit SufB; TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein.


ensembl_gene_id: Rpdx1_3051
symbol: anmK
gene_biotype: protein_coding
description:
  Protein of unknown function UPF0075; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.


ensembl_gene_id: Rpdx1_3052
symbol: tyrS
gene_biotype: protein_coding
description:
  tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.


ensembl_gene_id: Rpdx1_3056
symbol: ADU44637.1
gene_biotype: protein_coding
description:
  PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: bra:BRADO3529 hypothetical protein.


ensembl_gene_id: Rpdx1_3058
symbol: prfB
gene_biotype: protein_coding
description:
  Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.


ensembl_gene_id: Rpdx1_3059
symbol: ADU44640.1
gene_biotype: protein_coding
description:
  TIGRFAM: penicillin-binding protein, 1A family; KEGG: nha:Nham_1824 penicillin-binding protein 1A; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase.


ensembl_gene_id: Rpdx1_3060
symbol: ADU44641.1
gene_biotype: protein_coding
description:
  Manually curated; PFAM: cell wall hydrolase/autolysin; KEGG: bja:blr4306 putative N-acetylmuramoyl-L-alanine amidase precursor; SMART: cell wall hydrolase/autolysin.


ensembl_gene_id: Rpdx1_3061
symbol: rne
gene_biotype: protein_coding
description:
  Ribonuclease, Rne/Rng family; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.


ensembl_gene_id: Rpdx1_3062
symbol: dctA
gene_biotype: protein_coding
description:
  Sodium:dicarboxylate symporter; Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate from the periplasm across the membrane. Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: Rpdx1_3067
symbol: ADU44648.1
gene_biotype: protein_coding
description:
  Peroxidase; KEGG: maq:Maqu_0381 peroxidase; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin-like.


ensembl_gene_id: Rpdx1_3069
symbol: ADU44650.1
gene_biotype: protein_coding
description:
  PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: bac:BamMC406_0585 TetR family transcriptional regulator.


ensembl_gene_id: Rpdx1_3072
symbol: aroQ
gene_biotype: protein_coding
description:
  3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.


ensembl_gene_id: Rpdx1_3073
symbol: ADU44654.1
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: Rpdx1_3074
symbol: ADU44655.1
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: Rpdx1_3075
symbol: ADU44656.1
gene_biotype: protein_coding
description:
  Multi-sensor signal transduction histidine kinase; KEGG: bra:BRADO3499 putative two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; CHASE3 domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.


ensembl_gene_id: Rpdx1_3076
symbol: ADU44657.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_4218 putative two-component response regulator/receiver (CheY-like protein); PFAM: response regulator receiver; SMART: response regulator receiver.


ensembl_gene_id: Rpdx1_3077
symbol: ADU44658.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_2192 signal transduction histidine kinase; PFAM: histidine kinase dimerisation/phosphoacceptor; response regulator receiver; ATP-binding region ATPase domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein.


ensembl_gene_id: Rpdx1_3080
symbol: aat
gene_biotype: protein_coding
description:
  leucyl/phenylalanyl-tRNA/protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.


ensembl_gene_id: Rpdx1_3084
symbol: ADU44665.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; KEGG: bbt:BBta_4229 transcriptional regulator; PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Rpdx1_3089
symbol: ADU44669.1
gene_biotype: protein_coding
description:
  PFAM: Lytic transglycosylase catalytic; KEGG: bbt:BBta_4695 putative soluble lytic transglycosylase (SLT).


ensembl_gene_id: Rpdx1_3092
symbol: ADU44672.1
gene_biotype: protein_coding
description:
  Molybdate ABC transporter, inner membrane subunit; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: Rpdx1_3093
symbol: ADU44673.1
gene_biotype: protein_coding
description:
  TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: modA2; molybdate ABC transporter periplasmic molybdate-binding protein ModA-2.


ensembl_gene_id: Rpdx1_3094
symbol: ADU44674.1
gene_biotype: protein_coding
description:
  KEGG: modC2; molybdate ABC transporter ATP-binding protein ModC-2; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_3095
symbol: ADU44675.1
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: acr:Acry_1422 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Rpdx1_3096
symbol: ADU44676.1
gene_biotype: protein_coding
description:
  PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bbt:BBta_3208 putative nitrilase/cyanide hydratase family protein (carbon-nitrogen hydrolase).


ensembl_gene_id: Rpdx1_3098
symbol: ADU44678.1
gene_biotype: protein_coding
description:
  ABC transporter related protein; KEGG: bra:BRADO4854 putative branched-chain amino acid ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_3099
symbol: ADU44679.1
gene_biotype: protein_coding
description:
  ABC transporter related protein; KEGG: bbt:BBta_3205 putative branched-chain amino acid ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_3100
symbol: ADU44680.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: bra:BRADO4856 branched chain amino acid ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Rpdx1_3101
symbol: ADU44681.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: bbt:BBta_3203 branched chain amino acid ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Rpdx1_3102
symbol: ADU44682.1
gene_biotype: protein_coding
description:
  Urea ABC transporter, substrate-binding protein; KEGG: bra:BRADO4858 putative aliphatic amidase expression-regulating protein, AmiC; TIGRFAM: urea ABC transporter, substrate-binding protein; PFAM: Extracellular ligand-binding receptor.


ensembl_gene_id: Rpdx1_3103
symbol: ADU44683.1
gene_biotype: protein_coding
description:
  Response regulator receiver and ANTAR domain protein; PFAM: ANTAR domain protein; KEGG: bra:BRADO4859 hypothetical protein.


ensembl_gene_id: Rpdx1_3107
symbol: ADU44687.1
gene_biotype: protein_coding
description:
  ADP-ribosyl-(dinitrogen reductase) hydrolase; TIGRFAM: ADP-ribosyl-[dinitrogen reductase] hydrolase; KEGG: mag:amb1576 ADP-ribosyl-[dinitrogen reductase] glycohydrolase; PFAM: ADP-ribosylation/Crystallin J1.


ensembl_gene_id: Rpdx1_3108
symbol: ADU44688.1
gene_biotype: protein_coding
description:
  KEGG: mag:amb1575 NAD(+)-dinitrogen-reductase ADP-D-ribosyltransferase; PFAM: Dinitrogenase reductase ADP-ribosyltransferase.


ensembl_gene_id: Rpdx1_3110
symbol: ADU44690.1
gene_biotype: protein_coding
description:
  KEGG: rru:Rru_A0828 CRISPR-associated helicase Cas3 family protein protein; TIGRFAM: CRISPR-associated HD domain protein; CRISPR-associated helicase Cas3; SMART: DEAD-like helicase.


ensembl_gene_id: Rpdx1_3113
symbol: ADU44692.1
gene_biotype: protein_coding
description:
  KEGG: rru:Rru_A0830 CRISPR-associated RAMP Csd1 family protein; TIGRFAM: CRISPR-associated protein, Csd1 family; PFAM: CRISPR-associated protein CT1133.


ensembl_gene_id: Rpdx1_3114
symbol: ADU44693.1
gene_biotype: protein_coding
description:
  KEGG: rru:Rru_A0831 CRISPR-associated Csd2 family protein; TIGRFAM: CRISPR-associated protein, Csd2 family; CRISPR-associated protein, CT1132 family; PFAM: CRISPR-associated protein TM1801.


ensembl_gene_id: Rpdx1_3115
symbol: ADU44694.1
gene_biotype: protein_coding
description:
  CRISPR-associated protein Cas4; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family.


ensembl_gene_id: Rpdx1_3116
symbol: cas1
gene_biotype: protein_coding
description:
  CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.


ensembl_gene_id: Rpdx1_3117
symbol: cas2
gene_biotype: protein_coding
description:
  CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.


ensembl_gene_id: Rpdx1_3118
symbol: ADU44697.1
gene_biotype: protein_coding
description:
  KEGG: rce:RC1_0319 anaerobic ribonucleoside triphosphate reductase; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; PFAM: ATP-cone domain protein.


ensembl_gene_id: Rpdx1_3120
symbol: ADU44699.1
gene_biotype: protein_coding
description:
  KEGG: rce:RC1_0317 anaerobic ribonucleoside-triphosphate reductase activating protein; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein.


ensembl_gene_id: Rpdx1_3121
symbol: ADU44700.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, NifA subfamily, Fis Family; KEGG: avn:Avin_49020 sigma54-dependent transcriptional activator for the iron only nitrogenase, AnfA; PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; helix-turn-helix Fis-type; SMART: GAF domain protein; AAA ATPase.


ensembl_gene_id: Rpdx1_3122
symbol: nifH
gene_biotype: protein_coding
description:
  Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.


ensembl_gene_id: Rpdx1_3123
symbol: ADU44702.1
gene_biotype: protein_coding
description:
  TIGRFAM: nitrogenase iron-iron protein, alpha chain; nitrogenase alpha chain; nitrogenase component I, alpha chain; KEGG: cts:Ctha_1831 nitrogenase alpha chain; PFAM: oxidoreductase/nitrogenase component 1.


ensembl_gene_id: Rpdx1_3124
symbol: ADU44703.1
gene_biotype: protein_coding
description:
  TIGRFAM: Fe-only nitrogenase, delta subunit; KEGG: rru:Rru_A1393 nitrogenase; PFAM: Vanadium/alternative nitrogenase delta subunit.


ensembl_gene_id: Rpdx1_3125
symbol: ADU44704.1
gene_biotype: protein_coding
description:
  KEGG: rru:Rru_A1392 nitrogenase; TIGRFAM: Fe-only nitrogenase, beta subunit; PFAM: oxidoreductase/nitrogenase component 1; Belongs to the NifD/NifK/NifE/NifN family.


ensembl_gene_id: Rpdx1_3126
symbol: ADU44705.1
gene_biotype: protein_coding
description:
  KEGG: avn:Avin_48960 Fe-only nitrogenase accessory protein AnfO; TIGRFAM: Fe-only nitrogenase accessory protein AnfO; PFAM: Nitrogenase iron-iron accessory protein AnfO.


ensembl_gene_id: Rpdx1_3129
symbol: ADU44708.1
gene_biotype: protein_coding
description:
  NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase; Manually curated; KEGG: mca:MCA1828 dinitrogenase reductase ADP-ribosyltransferase-like protein; PFAM: Dinitrogenase reductase ADP-ribosyltransferase.


ensembl_gene_id: Rpdx1_3131
symbol: ADU44710.1
gene_biotype: protein_coding
description:
  KEGG: xau:Xaut_2451 RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein.


ensembl_gene_id: Rpdx1_3132
symbol: ADU44711.1
gene_biotype: protein_coding
description:
  KEGG: ara:Arad_9281 multidrug efflux transporter protein; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein.


ensembl_gene_id: Rpdx1_3133
symbol: ADU44712.1
gene_biotype: protein_coding
description:
  KEGG: ara:Arad_4545 protein secretion protein; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Rpdx1_3135
symbol: ADU44714.1
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; KEGG: bja:bll3559 two-component response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.


ensembl_gene_id: Rpdx1_3136
symbol: ADU44715.1
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; KEGG: bja:bll3558 two-component hybrid sensor and regulator; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein.


ensembl_gene_id: Rpdx1_3137
symbol: ADU44716.1
gene_biotype: protein_coding
description:
  PFAM: Flavocytochrome c sulphide dehydrogenase flavin-binding; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: xau:Xaut_1514 flavocytochrome c sulphide dehydrogenase flavin-binding.


ensembl_gene_id: Rpdx1_3142
symbol: ADU44721.1
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: xau:Xaut_1518 oxidoreductase molybdopterin binding.


ensembl_gene_id: Rpdx1_3143
symbol: ADU44722.1
gene_biotype: protein_coding
description:
  PFAM: 5'-Nucleotidase domain protein; KEGG: xau:Xaut_1519 5'-nucleotidase domain-containing protein; Belongs to the 5'-nucleotidase family.


ensembl_gene_id: Rpdx1_3150
symbol: ADU44729.1
gene_biotype: protein_coding
description:
  PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: mdi:METDI0762 sulfur oxidation V protein, cytochrome c-type biogenesis protein.


ensembl_gene_id: Rpdx1_3152
symbol: ADU44731.1
gene_biotype: protein_coding
description:
  KEGG: xau:Xaut_1527 regulatory protein ArsR; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR.


ensembl_gene_id: Rpdx1_3153
symbol: ADU44732.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: xau:Xaut_1528 protein of unknown function DUF395 YeeE/YedE.


ensembl_gene_id: Rpdx1_3155
symbol: ADU44734.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: oca:OCAR_5191 possible membrane protein with ATP/GTP-binding site motif A.


ensembl_gene_id: Rpdx1_3156
symbol: ADU44735.1
gene_biotype: protein_coding
description:
  PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: oan:Oant_1901 siderophore-interacting protein.


ensembl_gene_id: Rpdx1_3157
symbol: ADU44736.1
gene_biotype: protein_coding
description:
  KEGG: gau:GAU_3226 putative iron ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_3158
symbol: ADU44737.1
gene_biotype: protein_coding
description:
  PFAM: transport system permease protein; KEGG: gau:GAU_3227 putative iron ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: Rpdx1_3161
symbol: ADU44740.1
gene_biotype: protein_coding
description:
  TonB-dependent siderophore receptor; KEGG: ara:Arad_9688 ferrichrome-iron transporter; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.


ensembl_gene_id: Rpdx1_3162
symbol: ADU44741.1
gene_biotype: protein_coding
description:
  PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: oan:Oant_4087 TonB-dependent receptor.


ensembl_gene_id: Rpdx1_3163
symbol: ADU44742.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; KEGG: hch:HCH_01309 AraC-type DNA-binding domain-containing protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Rpdx1_3167
symbol: ADU44746.1
gene_biotype: protein_coding
description:
  TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: ttr:Tter_0818 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Rpdx1_3168
symbol: ADU44747.1
gene_biotype: protein_coding
description:
  TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: mrd:Mrad2831_4369 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Rpdx1_3169
symbol: ADU44748.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oan:Oant_3318 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Rpdx1_3170
symbol: ADU44749.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_2651 ABC transporter permease protein.


ensembl_gene_id: Rpdx1_3171
symbol: ADU44750.1
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: bbt:BBta_1982 putative ABC transporter, periplasmic binding protein.


ensembl_gene_id: Rpdx1_3173
symbol: ADU44752.1
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bbr:BB0342 zinc-binding dehydrogenase.


ensembl_gene_id: Rpdx1_3175
symbol: ADU44754.1
gene_biotype: protein_coding
description:
  TIGRFAM: amidohydrolase; KEGG: oan:Oant_3314 amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein.


ensembl_gene_id: Rpdx1_3176
symbol: ADU44755.1
gene_biotype: protein_coding
description:
  PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: svi:Svir_03020 cysteine synthase.


ensembl_gene_id: Rpdx1_3177
symbol: ADU44756.1
gene_biotype: protein_coding
description:
  KEGG: sil:SPO3179 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type.


ensembl_gene_id: Rpdx1_3178
symbol: ADU44757.1
gene_biotype: protein_coding
description:
  Regulatory protein ArsR; KEGG: nwi:Nwi_2907 ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR.


ensembl_gene_id: Rpdx1_3180
symbol: ADU44759.1
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: nwi:Nwi_2303 fec I like protein; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Rpdx1_3185
symbol: ADU44764.1
gene_biotype: protein_coding
description:
  PFAM: Xylose isomerase domain protein TIM barrel; KEGG: nwi:Nwi_2298 xylose isomerase-like TIM barrel.


ensembl_gene_id: Rpdx1_3186
symbol: ADU44765.1
gene_biotype: protein_coding
description:
  PFAM: periplasmic binding protein; KEGG: rsp:RSP_3079 ABC Fe+3 siderophore transporter, periplasmic substrate-binding protein.


ensembl_gene_id: Rpdx1_3187
symbol: ADU44766.1
gene_biotype: protein_coding
description:
  PFAM: transport system permease protein; KEGG: rsp:RSP_3220 ABC ferric siderophore transporter, inner membrane subunit; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: Rpdx1_3188
symbol: ADU44767.1
gene_biotype: protein_coding
description:
  PFAM: transport system permease protein; KEGG: atc:AGR_C_4491 ferrichrome ABC transporter (permease) homolog; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: Rpdx1_3191
symbol: ADU44770.1
gene_biotype: protein_coding
description:
  PFAM: TonB-dependent receptor; TonB-dependent receptor plug; Secretin/TonB short domain; KEGG: nwi:Nwi_2296 TonB-dependent receptor.


ensembl_gene_id: Rpdx1_3193
symbol: ADU44772.1
gene_biotype: protein_coding
description:
  KEGG: nwi:Nwi_2294 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.


ensembl_gene_id: Rpdx1_3197
symbol: ADU44776.1
gene_biotype: protein_coding
description:
  KEGG: nar:Saro_0399 ATPase, E1-E2 type; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase.


ensembl_gene_id: Rpdx1_3202
symbol: ADU44781.1
gene_biotype: protein_coding
description:
  PFAM: Na+/H+ antiporter subunit; KEGG: hha:Hhal_0816 putative monovalent cation/H+ antiporter subunit G.


ensembl_gene_id: Rpdx1_3204
symbol: ADU44783.1
gene_biotype: protein_coding
description:
  PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: msl:Msil_1036 NADH-ubiquinone oxidoreductase chain 4L.


ensembl_gene_id: Rpdx1_3207
symbol: ADU44786.1
gene_biotype: protein_coding
description:
  PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: xau:Xaut_1581 NADH/ubiquinone/plastoquinone (complex I).


ensembl_gene_id: Rpdx1_3208
symbol: ADU44787.1
gene_biotype: protein_coding
description:
  KEGG: pmy:Pmen_0826 hydrophobe/amphiphile efflux-1 (HAE1) family protein; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein.


ensembl_gene_id: Rpdx1_3209
symbol: ADU44788.1
gene_biotype: protein_coding
description:
  KEGG: oan:Oant_0375 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Rpdx1_3210
symbol: ADU44789.1
gene_biotype: protein_coding
description:
  Quinate dehydrogenase (pyrroloquinoline-quinone); PFAM: PQQ-dependent enzyme-like; Pyrrolo-quinoline quinone; KEGG: xca:xccb100_1109 quinoprotein glucose dehydrogenase; SMART: Pyrrolo-quinoline quinone beta-propeller repeat.


ensembl_gene_id: Rpdx1_3211
symbol: ADU44790.1
gene_biotype: protein_coding
description:
  Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: oca:OCAR_4496 ferric uptake regulator, FUR family; Belongs to the Fur family.


ensembl_gene_id: Rpdx1_3217
symbol: ADU44796.1
gene_biotype: protein_coding
description:
  KEGG: eba:ebA609 putative cation transport ATPase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase.


ensembl_gene_id: Rpdx1_3222
symbol: ADU44801.1
gene_biotype: protein_coding
description:
  Multi-sensor signal transduction histidine kinase; KEGG: azc:AZC_4654 sensor protein FixL; PFAM: ATP-binding region ATPase domain protein; CHASE3 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.


ensembl_gene_id: Rpdx1_3223
symbol: ADU44802.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_2169 adenylate/guanylate cyclase; PFAM: CHASE2 domain protein; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase.


ensembl_gene_id: Rpdx1_3229
symbol: prfC
gene_biotype: protein_coding
description:
  Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.


ensembl_gene_id: Rpdx1_3232
symbol: ADU44811.1
gene_biotype: protein_coding
description:
  PFAM: Putitive phosphate transport regulator; KEGG: bbt:BBta_3760 putative low-affinity phosphate transport accessory protein.


ensembl_gene_id: Rpdx1_3234
symbol: ADU44813.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: bbt:BBta_3759 hypothetical protein; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Rpdx1_3235
symbol: ADU44814.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: bra:BRADO3733 putative ABC transporter, permease protein; putative branched-chain amino acid transport permease; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Rpdx1_3237
symbol: ADU44816.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr4037 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_3238
symbol: ADU44817.1
gene_biotype: protein_coding
description:
  Arsenate reductase-like protein; PFAM: arsenate reductase and related; KEGG: nha:Nham_1671 hypothetical protein; Belongs to the ArsC family.


ensembl_gene_id: Rpdx1_3239
symbol: ADU44818.1
gene_biotype: protein_coding
description:
  KEGG: rce:RC1_2401 pyruvate kinase; PFAM: Pyruvate kinase barrel; Belongs to the pyruvate kinase family.


ensembl_gene_id: Rpdx1_3242
symbol: ADU44820.1
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: atc:AGR_L_284 flavin-containing monooxygenase, putative.


ensembl_gene_id: Rpdx1_3243
symbol: ADU44821.1
gene_biotype: protein_coding
description:
  KEGG: nwi:Nwi_3083 transcriptional regulator AbrB; TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein.


ensembl_gene_id: Rpdx1_3250
symbol: ADU44828.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; KEGG: azc:AZC_1291 transcriptional regulator; PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Rpdx1_3251
symbol: gltS
gene_biotype: protein_coding
description:
  Sodium/glutamate symporter; Catalyzes the sodium-dependent transport of glutamate. Belongs to the glutamate:Na(+) symporter (ESS) (TC 2.A.27) family.


ensembl_gene_id: Rpdx1_3262
symbol: ADU44838.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_2306 AraC/XylS family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Rpdx1_3265
symbol: ADU44840.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll7081 two-component response regulator; PFAM: regulatory protein LuxR; response regulator receiver; SMART: regulatory protein LuxR.


ensembl_gene_id: Rpdx1_3269
symbol: ADU44844.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr2546 putative chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.


ensembl_gene_id: Rpdx1_3270
symbol: ADU44845.1
gene_biotype: protein_coding
description:
  KEGG: mag:amb3899 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer.


ensembl_gene_id: Rpdx1_3271
symbol: ADU44846.1
gene_biotype: protein_coding
description:
  TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; histidine kinase HAMP region domain protein; KEGG: bbt:BBta_1536 methyl-accepting chemotaxis protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.


ensembl_gene_id: Rpdx1_3275
symbol: ADU44849.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_7448 putative conjugal transfer protein TrbG; TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX.


ensembl_gene_id: Rpdx1_3280
symbol: ADU44854.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_3367 conjugal transfer ATPase TrbE; PFAM: CagE, TrbE, VirB component of type IV transporter system, conserved region; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_3283
symbol: ADU44857.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_7741 conjugal transfer protein TrbB; TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E.


ensembl_gene_id: Rpdx1_3285
symbol: ADU44858.1
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pst:PSPTO_1004 GGDEF domain protein; SMART: GGDEF domain containing protein.


ensembl_gene_id: Rpdx1_3286
symbol: ADU44859.1
gene_biotype: protein_coding
description:
  TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: bbt:BBta_2308 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; SMART: chemotaxis sensory transducer; PAC repeat-containing protein; PAS domain containing protein.


ensembl_gene_id: Rpdx1_3289
symbol: ADU44862.1
gene_biotype: protein_coding
description:
  KEGG: mlo:mll1722 ATP-binding protein of sugar ABC transporter; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_3291
symbol: ADU44863.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; Strictosidine synthase, conserved region; KEGG: bja:blr7869 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Rpdx1_3293
symbol: ADU44865.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: vei:Veis_3290 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Rpdx1_3294
symbol: ADU44866.1
gene_biotype: protein_coding
description:
  KEGG: mno:Mnod_3745 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.


ensembl_gene_id: Rpdx1_3298
symbol: ADU44870.1
gene_biotype: protein_coding
description:
  PFAM: transposase IS116/IS110/IS902 family protein; KEGG: xau:Xaut_4009 transposase IS116/IS110/IS902 family protein.


ensembl_gene_id: Rpdx1_3300
symbol: ADU44872.1
gene_biotype: protein_coding
description:
  PFAM: Peptidase S26, conserved region; KEGG: bbt:BBta_7435 putative conjugal transfer protein precursor.


ensembl_gene_id: Rpdx1_3306
symbol: ADU44878.1
gene_biotype: protein_coding
description:
  Manually curated; PFAM: helix-turn-helix domain protein; KEGG: oan:Oant_1848 XRE family transcriptional regulator; SMART: helix-turn-helix domain protein.


ensembl_gene_id: Rpdx1_3313
symbol: ADU44884.1
gene_biotype: protein_coding
description:
  KEGG: gdj:Gdia_2781 ParB domain protein nuclease; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease.


ensembl_gene_id: Rpdx1_3316
symbol: ADU44887.1
gene_biotype: protein_coding
description:
  PFAM: integrase family protein; KEGG: azl:AZL_011700 phage integrase; Belongs to the 'phage' integrase family.


ensembl_gene_id: Rpdx1_3318
symbol: ADU44889.1
gene_biotype: protein_coding
description:
  PFAM: Fmu (Sun) domain protein; KEGG: bja:blr3985 Sun protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.


ensembl_gene_id: Rpdx1_3319
symbol: ADU44890.1
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: bbt:BBta_3611 putative NADP-dependent oxidoreductase.


ensembl_gene_id: Rpdx1_3320
symbol: guaB
gene_biotype: protein_coding
description:
  Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.


ensembl_gene_id: Rpdx1_3324
symbol: rlmE
gene_biotype: protein_coding
description:
  Ribosomal RNA methyltransferase RrmJ/FtsJ; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.


ensembl_gene_id: Rpdx1_3327
symbol: ADU44898.1
gene_biotype: protein_coding
description:
  Carbon-monoxide dehydrogenase (acceptor); KEGG: bja:bll3968 carbon monoxide dehydrogenase large chain; PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead.


ensembl_gene_id: Rpdx1_3328
symbol: ADU44899.1
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: bbt:BBta_5091 putative branched-chain amino acid ABC transporter, substrate-binding protein.


ensembl_gene_id: Rpdx1_3330
symbol: ADU44901.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF188; KEGG: bja:bll3966 hypothetical protein; Belongs to the UPF0178 family.


ensembl_gene_id: Rpdx1_3332
symbol: ADU44903.1
gene_biotype: protein_coding
description:
  PFAM: alanine racemase domain protein; KEGG: bra:BRADO3145 putative amino acid processing enzyme-related protein (aldolase or racemase).


ensembl_gene_id: Rpdx1_3334
symbol: ADU44905.1
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbt:BBta_3584 putative 3-oxo-(acyl) acyl carrier protein reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Rpdx1_3336
symbol: ADU44907.1
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bbt:BBta_5263 putative oxidoreductase.


ensembl_gene_id: Rpdx1_3338
symbol: ADU44909.1
gene_biotype: protein_coding
description:
  PFAM: Glutathione S-transferase domain; KEGG: bja:bll5607 glutathione S-transferase; Belongs to the GST superfamily.


ensembl_gene_id: Rpdx1_3339
symbol: ADU44910.1
gene_biotype: protein_coding
description:
  PFAM: Methionine synthase vitamin-B12 independent; KEGG: bra:BRADO2911 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase.


ensembl_gene_id: Rpdx1_3341
symbol: gpt
gene_biotype: protein_coding
description:
  Xanthine phosphoribosyltransferase; Acts on guanine, xanthine and to a lesser extent hypoxanthine; Belongs to the purine/pyrimidine phosphoribosyltransferase family. XGPT subfamily.


ensembl_gene_id: Rpdx1_3343
symbol: ADU44914.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: bbt:BBta_5273 hypothetical protein.


ensembl_gene_id: Rpdx1_3345
symbol: ADU44916.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr5614 hypothetical protein; PFAM: transglutaminase domain protein; transglutaminase domain protein; SMART: transglutaminase domain protein.


ensembl_gene_id: Rpdx1_3349
symbol: ADU44920.1
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bja:blr5618 putative oxidoreductase protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Rpdx1_3351
symbol: ADU44922.1
gene_biotype: protein_coding
description:
  PFAM: Cupin 2 conserved barrel domain protein; KEGG: mrb:Mrub_0901 cupin 2 conserved barrel domain-containing protein.


ensembl_gene_id: Rpdx1_3352
symbol: ADU44923.1
gene_biotype: protein_coding
description:
  PFAM: ribulose bisphosphate carboxylase large chain; KEGG: rru:Rru_A1998 ribulose 1,5-bisphosphate carboxylase large subunit.


ensembl_gene_id: Rpdx1_3353
symbol: ADU44924.1
gene_biotype: protein_coding
description:
  PFAM: Na+ dependent nucleoside transporter domain protein; Na+ dependent nucleoside transporter; nucleoside recognition domain protein; KEGG: bja:blr5621 hypothetical protein.


ensembl_gene_id: Rpdx1_3361
symbol: ADU44932.1
gene_biotype: protein_coding
description:
  Plasmid maintenance system antidote protein, XRE family; TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: mpo:Mpop_2927 plasmid maintenance system antidote protein, XRE family; SMART: helix-turn-helix domain protein.


ensembl_gene_id: Rpdx1_3362
symbol: ADU44933.1
gene_biotype: protein_coding
description:
  Helix-turn-helix domain protein; KEGG: rru:Rru_A3411 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.


ensembl_gene_id: Rpdx1_3364
symbol: ADU44935.1
gene_biotype: protein_coding
description:
  yecA family protein; KEGG: bbt:BBta_4386 transporter; TIGRFAM: yecA family protein; PFAM: SEC-C motif domain protein.


ensembl_gene_id: Rpdx1_3365
symbol: ADU44936.1
gene_biotype: protein_coding
description:
  Regulatory protein ArsR; KEGG: bbt:BBta_4243 ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR.


ensembl_gene_id: Rpdx1_3366
symbol: ADU44937.1
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbt:BBta_4242 putative short-chain dehydrogenases/reductases (SDR) family protein.


ensembl_gene_id: Rpdx1_3369
symbol: cowN
gene_biotype: protein_coding
description:
  Hypothetical protein; Is required to sustain N(2)-dependent growth in the presence of low levels of carbon monoxide (CO). Probably acts by protecting the N(2) fixation ability of the nitrogenase complex, which is inactivated in the presence of CO.


ensembl_gene_id: Rpdx1_3370
symbol: ADU44941.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: rlt:Rleg2_5933 protein of unknown function DUF899 thioredoxin family protein.


ensembl_gene_id: Rpdx1_3371
symbol: ADU44942.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_2834 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; Belongs to the IlvD/Edd family.


ensembl_gene_id: Rpdx1_3374
symbol: ADU44945.1
gene_biotype: protein_coding
description:
  Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: oca:OCAR_6732 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein.


ensembl_gene_id: Rpdx1_3375
symbol: ADU44946.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF6 transmembrane; KEGG: bra:BRADO2478 putative transmembrane protein.


ensembl_gene_id: Rpdx1_3377
symbol: ADU44948.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_2816 putative catechol 1,2-dioxygenase; PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein.


ensembl_gene_id: Rpdx1_3381
symbol: ADU44952.1
gene_biotype: protein_coding
description:
  PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; KEGG: bja:blr0987 3-methylcrotonyl-CoA carboxylase alpha subunit.


ensembl_gene_id: Rpdx1_3390
symbol: ADU44961.1
gene_biotype: protein_coding
description:
  Integral membrane sensor hybrid histidine kinase; KEGG: bja:blr0516 two-component hybrid sensor and regulator; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; response regulator receiver.


ensembl_gene_id: Rpdx1_3399
symbol: ADU44969.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll7072 biopolymer transport protein; TIGRFAM: TonB system transport protein ExbD; PFAM: Biopolymer transport protein ExbD/TolR.


ensembl_gene_id: Rpdx1_3400
symbol: ADU44970.1
gene_biotype: protein_coding
description:
  tonB-system energizer ExbB; KEGG: bja:bll7073 biopolymer transport protein; TIGRFAM: tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel.


ensembl_gene_id: Rpdx1_3403
symbol: ADU44973.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll7076 hemin receptor precursor; TIGRFAM: TonB-dependent heme/hemoglobin receptor family protein; TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.


ensembl_gene_id: Rpdx1_3404
symbol: ADU44974.1
gene_biotype: protein_coding
description:
  PFAM: dTDP-4-dehydrorhamnose reductase; KEGG: hha:Hhal_0382 NAD-dependent epimerase/dehydratase family protein.


ensembl_gene_id: Rpdx1_3405
symbol: ADU44975.1
gene_biotype: protein_coding
description:
  Radical SAM domain protein; KEGG: hemN1; oxygen-independent coproporphyrinogen-III oxidase-1; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: Rpdx1_3408
symbol: ADU44978.1
gene_biotype: protein_coding
description:
  PFAM: transport system permease protein; KEGG: nwi:Nwi_2323 ABC-type Fe3+-siderophore transport system permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: Rpdx1_3409
symbol: hmuV
gene_biotype: protein_coding
description:
  ABC transporter related protein; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.


ensembl_gene_id: Rpdx1_3410
symbol: ADU44980.1
gene_biotype: protein_coding
description:
  Flavodoxin; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family.


ensembl_gene_id: Rpdx1_3412
symbol: cynS
gene_biotype: protein_coding
description:
  Cyanate lyase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family.


ensembl_gene_id: Rpdx1_3413
symbol: ADU44983.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll5732 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_3414
symbol: ADU44984.1
gene_biotype: protein_coding
description:
  Nitrate ABC transporter, inner membrane subunit; KEGG: bbt:BBta_5414 putative nitrate ABC transporter (permease protein) (NtrB-like protein); TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Rpdx1_3416
symbol: ADU44986.1
gene_biotype: protein_coding
description:
  Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold domain protein; helix-turn-helix Fis-type; KEGG: bja:blr5735 transcriptional regulatory protein; SMART: AAA ATPase; PAC repeat-containing protein; PAS domain containing protein.


ensembl_gene_id: Rpdx1_3417
symbol: ADU44987.1
gene_biotype: protein_coding
description:
  precorrin-6A synthase (deacetylating); Catalyzes the methylation of C-1 in precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A.


ensembl_gene_id: Rpdx1_3419
symbol: cobS
gene_biotype: protein_coding
description:
  Cobalamin-5-phosphate synthase CobS; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.


ensembl_gene_id: Rpdx1_3421
symbol: ADU44991.1
gene_biotype: protein_coding
description:
  Manually curated; TIGRFAM: precorrin 3B synthase CobZ; KEGG: alv:Alvin_1082 precorrin 3B synthase CobZ; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein.


ensembl_gene_id: Rpdx1_3425
symbol: ADU44995.1
gene_biotype: protein_coding
description:
  KEGG: sil:SPO2866 precorrin-2 C20-methyltransferase; TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Belongs to the precorrin methyltransferase family.


ensembl_gene_id: Rpdx1_3426
symbol: ADU44996.1
gene_biotype: protein_coding
description:
  TIGRFAM: precorrin-3B C17-methyltransferase; KEGG: sjp:SJA_C2-03130 precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.


ensembl_gene_id: Rpdx1_3427
symbol: ADU44997.1
gene_biotype: protein_coding
description:
  TIGRFAM: precorrin-6x reductase; KEGG: rde:RD1_3822 precorrin-6A reductase; PFAM: Precorrin-6x reductase CbiJ/CobK.


ensembl_gene_id: Rpdx1_3428
symbol: ADU44998.1
gene_biotype: protein_coding
description:
  TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; KEGG: xau:Xaut_3280 precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiE subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.


ensembl_gene_id: Rpdx1_3429
symbol: ADU44999.1
gene_biotype: protein_coding
description:
  PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: mdi:METDI1514 putative cobalamin biosynthesis protein.


ensembl_gene_id: Rpdx1_3430
symbol: ADU45000.1
gene_biotype: protein_coding
description:
  TIGRFAM: precorrin-4 C11-methyltransferase; KEGG: rec:RHECIAT_PA0000372 precorrin-4 c(11)-methyltransferase protein; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Belongs to the precorrin methyltransferase family.


ensembl_gene_id: Rpdx1_3431
symbol: cobB-2
gene_biotype: protein_coding
description:
  Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.


ensembl_gene_id: Rpdx1_3432
symbol: ADU45002.1
gene_biotype: protein_coding
description:
  KEGG: sil:SPO2873 uroporphyrin-III C-methyltransferase; TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.


ensembl_gene_id: Rpdx1_3433
symbol: ADU45003.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_3728 periplasmic binding protein; manually curated; PFAM: periplasmic binding protein.


ensembl_gene_id: Rpdx1_3438
symbol: ADU45008.1
gene_biotype: protein_coding
description:
  ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.


ensembl_gene_id: Rpdx1_3442
symbol: ADU45012.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr0316 periplasmic copper-binding precursor; PFAM: periplasmic copper-binding; SMART: Carbohydrate-binding and sugar hydrolysis; Parallel beta-helix repeat.


ensembl_gene_id: Rpdx1_3443
symbol: nosZ
gene_biotype: protein_coding
description:
  Nitrous-oxide reductase; Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide; In the C-terminal section; belongs to the cytochrome c oxidase subunit 2 family.


ensembl_gene_id: Rpdx1_3444
symbol: ADU45014.1
gene_biotype: protein_coding
description:
  Nitrous oxide expression regulator, NosR; PFAM: FMN-binding domain protein; KEGG: bja:blr0314 nitrous oxide reductase expression regulator.


ensembl_gene_id: Rpdx1_3450
symbol: ADU45020.1
gene_biotype: protein_coding
description:
  KEGG: oca:OCAR_7726 cation efflux system protein CzcA; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: Rpdx1_3451
symbol: ADU45021.1
gene_biotype: protein_coding
description:
  KEGG: oca:OCAR_7727 secretion protein HlyD; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein.


ensembl_gene_id: Rpdx1_3455
symbol: ADU45025.1
gene_biotype: protein_coding
description:
  KEGG: bid:Bind_0928 ornithine decarboxylase; PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein.


ensembl_gene_id: Rpdx1_3460
symbol: ADU45030.1
gene_biotype: protein_coding
description:
  TRAP dicarboxylate transporter, DctM subunit; KEGG: pag:PLES_55611 putative C4-dicarboxylate transporter; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit.


ensembl_gene_id: Rpdx1_3461
symbol: ADU45031.1
gene_biotype: protein_coding
description:
  PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: hch:HCH_06606 TRAP-type C4-dicarboxylate transport system, small permease component.


ensembl_gene_id: Rpdx1_3462
symbol: ADU45032.1
gene_biotype: protein_coding
description:
  TRAP dicarboxylate transporter, DctP subunit; KEGG: psa:PST_0078 C4 dicarboxylate binding protein; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7.


ensembl_gene_id: Rpdx1_3463
symbol: leuA
gene_biotype: protein_coding
description:
  2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily.


ensembl_gene_id: Rpdx1_3464
symbol: bioB
gene_biotype: protein_coding
description:
  Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.


ensembl_gene_id: Rpdx1_3468
symbol: ADU45038.1
gene_biotype: protein_coding
description:
  SMART: extracellular solute-binding protein family 3; KEGG: bbt:BBta_6066 ABC transporter substrate-binding protein.


ensembl_gene_id: Rpdx1_3469
symbol: ADU45039.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_6067 ABC transporter permease.


ensembl_gene_id: Rpdx1_3471
symbol: ADU45040.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll6488 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_3473
symbol: ADU45042.1
gene_biotype: protein_coding
description:
  PFAM: Substrate-binding region of ABC-type glycine betaine transport system; binding-protein-dependent transport systems inner membrane component; KEGG: bra:BRADO5551 putative glycine betaine/carnitine/choline ABC transporter (permease and substrate binding protein).


ensembl_gene_id: Rpdx1_3474
symbol: ADU45043.1
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bra:BRADO5556 oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Rpdx1_3475
symbol: ADU45044.1
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: bra:BRADO0975 branched chain amino acid ABC transporter periplasmic-binding protein.


ensembl_gene_id: Rpdx1_3476
symbol: ADU45045.1
gene_biotype: protein_coding
description:
  KEGG: bpy:Bphyt_6461 GntR domain protein; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.


ensembl_gene_id: Rpdx1_3477
symbol: ilvC
gene_biotype: protein_coding
description:
  Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.


ensembl_gene_id: Rpdx1_3479
symbol: ADU45048.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF6 transmembrane; KEGG: bja:bll6499 putative amino acid metabolite efflux pump.


ensembl_gene_id: Rpdx1_3481
symbol: ADU45050.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO5562 acetolactate synthase 3 regulatory subunit; TIGRFAM: acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit-like; amino acid-binding ACT domain protein.


ensembl_gene_id: Rpdx1_3482
symbol: ADU45051.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO5564 acetolactate synthase 3 catalytic subunit; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP-binding.


ensembl_gene_id: Rpdx1_3483
symbol: miaA
gene_biotype: protein_coding
description:
  tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.


ensembl_gene_id: Rpdx1_3484
symbol: ADU45053.1
gene_biotype: protein_coding
description:
  TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); KEGG: bja:blr6505 phosphoserine phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase.


ensembl_gene_id: Rpdx1_3487
symbol: ADU45056.1
gene_biotype: protein_coding
description:
  Uncharacterized peroxidase-related enzyme; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.


ensembl_gene_id: Rpdx1_3491
symbol: ADU45060.1
gene_biotype: protein_coding
description:
  PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: nwi:Nwi_1245 3-hydroxymyristoyl-acyl carrier protein dehydratase.


ensembl_gene_id: Rpdx1_3492
symbol: ADU45061.1
gene_biotype: protein_coding
description:
  PFAM: Beta-ketoacyl synthase; KEGG: nha:Nham_1504 3-oxoacyl-(acyl carrier protein) synthase II; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: Rpdx1_3493
symbol: ADU45062.1
gene_biotype: protein_coding
description:
  PFAM: Beta-ketoacyl synthase; KEGG: nha:Nham_1503 3-oxoacyl-(acyl carrier protein) synthase II; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: Rpdx1_3494
symbol: ADU45063.1
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: oca:OCAR_6502 alcohol dehydrogenase.


ensembl_gene_id: Rpdx1_3495
symbol: ADU45064.1
gene_biotype: protein_coding
description:
  PFAM: lipid A biosynthesis acyltransferase; KEGG: nha:Nham_1502 lipid A biosynthesis lauroyl acyltransferase.


ensembl_gene_id: Rpdx1_3496
symbol: ADU45065.1
gene_biotype: protein_coding
description:
  KEGG: psl:Psta_1421 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: Rpdx1_3497
symbol: ADU45066.1
gene_biotype: protein_coding
description:
  Extracellular solute-binding protein family 1; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.


ensembl_gene_id: Rpdx1_3501
symbol: ADU45070.1
gene_biotype: protein_coding
description:
  PFAM: MotA/TolQ/ExbB proton channel; KEGG: bra:BRADO4687 putative chemotaxis protein MotA (flagellar motor component).


ensembl_gene_id: Rpdx1_3502
symbol: ADU45071.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr3797 phosphatidylserine synthase; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: Rpdx1_3503
symbol: psd
gene_biotype: protein_coding
description:
  Phosphatidylserine decarboxylase related protein; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).


ensembl_gene_id: Rpdx1_3504
symbol: ADU45073.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr3795 ABC transporter; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_3505
symbol: ADU45074.1
gene_biotype: protein_coding
description:
  PFAM: conserved hypothetical protein; KEGG: nwi:Nwi_1232 hypothetical protein; Belongs to the LOG family.


ensembl_gene_id: Rpdx1_3507
symbol: ADU45076.1
gene_biotype: protein_coding
description:
  PFAM: FAD linked oxidase domain protein; KEGG: pla:Plav_2705 FAD linked oxidase domain-containing protein.


ensembl_gene_id: Rpdx1_3508
symbol: ADU45077.1
gene_biotype: protein_coding
description:
  PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein TPP binding domain protein; KEGG: pla:Plav_0755 hypothetical protein.


ensembl_gene_id: Rpdx1_3509
symbol: ADU45078.1
gene_biotype: protein_coding
description:
  KEGG: nwi:Nwi_1231 putative alpha-isopropylmalate/homocitrate synthase family transferase; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: LeuA allosteric (dimerisation) domain; pyruvate carboxyltransferase; Belongs to the alpha-IPM synthase/homocitrate synthase family.


ensembl_gene_id: Rpdx1_3512
symbol: cysS
gene_biotype: protein_coding
description:
  TIGRFAM: cysteinyl-tRNA synthetase; KEGG: bbt:BBta_3498 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: Rpdx1_3516
symbol: ADU45085.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; KEGG: pag:PLES_09021 putative transcriptional regulator; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR.


ensembl_gene_id: Rpdx1_3520
symbol: nadE
gene_biotype: protein_coding
description:
  NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.


ensembl_gene_id: Rpdx1_3521
symbol: ADU45090.1
gene_biotype: protein_coding
description:
  Diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid.


ensembl_gene_id: Rpdx1_3522
symbol: ADU45091.1
gene_biotype: protein_coding
description:
  TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: bja:blr3778 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase class II.


ensembl_gene_id: Rpdx1_3525
symbol: rpiA
gene_biotype: protein_coding
description:
  Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.


ensembl_gene_id: Rpdx1_3526
symbol: cbbZ
gene_biotype: protein_coding
description:
  Phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.


ensembl_gene_id: Rpdx1_3528
symbol: moaA
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.


ensembl_gene_id: Rpdx1_3529
symbol: ADU45098.1
gene_biotype: protein_coding
description:
  PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: oca:OCAR_6533 tripartite ATP-independent periplasmic transporter.


ensembl_gene_id: Rpdx1_3530
symbol: ADU45099.1
gene_biotype: protein_coding
description:
  KEGG: oca:OCAR_6534 trap dicarboxylate transporter-DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit.


ensembl_gene_id: Rpdx1_3531
symbol: ADU45100.1
gene_biotype: protein_coding
description:
  Extracellular solute-binding protein, family 7; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.


ensembl_gene_id: Rpdx1_3532
symbol: ADU45101.1
gene_biotype: protein_coding
description:
  ATPase-like, ParA/MinD; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.


ensembl_gene_id: Rpdx1_3533
symbol: ADU45102.1
gene_biotype: protein_coding
description:
  PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: bra:BRADO4737 putative oxidoreductase; putative 3-hydroxyisobutyrate dehydrogenase.


ensembl_gene_id: Rpdx1_3534
symbol: ADU45103.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_1469 periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.


ensembl_gene_id: Rpdx1_3537
symbol: dusA
gene_biotype: protein_coding
description:
  TIM-barrel protein, yjbN family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily.


ensembl_gene_id: Rpdx1_3538
symbol: ADU45107.1
gene_biotype: protein_coding
description:
  PFAM: acriflavin resistance protein; KEGG: nha:Nham_1082 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: Rpdx1_3539
symbol: ADU45108.1
gene_biotype: protein_coding
description:
  Efflux transporter, RND family, MFP subunit; KEGG: bra:BRADO1901 putative component of multidrug efflux system; putative signal peptide; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Rpdx1_3541
symbol: ADU45110.1
gene_biotype: protein_coding
description:
  Adenylate/guanylate cyclase with integral membrane sensor; KEGG: ret:RHE_CH02959 adenylate cyclase protein; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; histidine kinase HAMP region domain protein; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; histidine kinase HAMP region domain protein.


ensembl_gene_id: Rpdx1_3545
symbol: ADU45114.1
gene_biotype: protein_coding
description:
  PFAM: acriflavin resistance protein; KEGG: bbt:BBta_2039 RND family mulitdrug efflux protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: Rpdx1_3546
symbol: ADU45115.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_2040 RND family mulitdrug efflux protein; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Rpdx1_3547
symbol: ADU45116.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO1729 RND family mulitdrug efflux protein; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Rpdx1_3551
symbol: ADU45120.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_5970 alcohol dehydrogenase class III; TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.


ensembl_gene_id: Rpdx1_3552
symbol: pqqE
gene_biotype: protein_coding
description:
  Coenzyme PQQ biosynthesis protein E; Catalyzes the cross-linking of a glutamate residue and a tyrosine residue in the PqqA protein as part of the biosynthesis of pyrroloquinoline quinone (PQQ).


ensembl_gene_id: Rpdx1_3553
symbol: pqqD
gene_biotype: protein_coding
description:
  Coenzyme PQQ synthesis protein D (pyrroloquinoline quinone biosynthesis protein D)(PqqD); Functions as a PqqA binding protein and presents PqqA to PqqE, in the pyrroloquinoline quinone (PQQ) biosynthetic pathway.


ensembl_gene_id: Rpdx1_3554
symbol: pqqC
gene_biotype: protein_coding
description:
  Coenzyme PQQ biosynthesis protein C; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ.


ensembl_gene_id: Rpdx1_3555
symbol: pqqB
gene_biotype: protein_coding
description:
  Coenzyme PQQ biosynthesis protein B; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family.


ensembl_gene_id: Rpdx1_3556
symbol: pqqA
gene_biotype: protein_coding
description:
  Coenzyme PQQ biosynthesis protein A; Required for coenzyme pyrroloquinoline quinone (PQQ) biosynthesis. PQQ is probably formed by cross-linking a specific glutamate to a specific tyrosine residue and excising these residues from the peptide; Belongs to the PqqA family.


ensembl_gene_id: Rpdx1_3557
symbol: ADU45126.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll3158 transcriptional regulatory protein; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.


ensembl_gene_id: Rpdx1_3558
symbol: frc
gene_biotype: protein_coding
description:
  formyl-CoA transferase; Involved in the catabolism of oxalate and in the adapatation to low pH via the induction of the oxalate-dependent acid tolerance response (ATR). Catalyzes the transfer of the CoA moiety from formyl- CoA to oxalate; Belongs to the CoA-transferase III family. Frc subfamily.


ensembl_gene_id: Rpdx1_3559
symbol: ADU45128.1
gene_biotype: protein_coding
description:
  TIGRFAM: 2-dehydropantoate 2-reductase; KEGG: bja:bll3147 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein.


ensembl_gene_id: Rpdx1_3562
symbol: ADU45131.1
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bra:BRADO4966 putative NADPH quinone oxidoreductase.


ensembl_gene_id: Rpdx1_3563
symbol: ADU45132.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_1450 cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.


ensembl_gene_id: Rpdx1_3564
symbol: ADU45133.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_1449 periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein.


ensembl_gene_id: Rpdx1_3565
symbol: ADU45134.1
gene_biotype: protein_coding
description:
  KEGG: azc:AZC_3227 putative outer membrane autotransporter barrel precursor; TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; peptidase S8 and S53 subtilisin kexin sedolisin.


ensembl_gene_id: Rpdx1_3566
symbol: ADU45135.1
gene_biotype: protein_coding
description:
  KEGG: mpo:Mpop_2366 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Rpdx1_3568
symbol: glnE
gene_biotype: protein_coding
description:
  (Glutamate--ammonia-ligase) adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal tra [...]


ensembl_gene_id: Rpdx1_3569
symbol: ADU45138.1
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; KEGG: bbt:BBta_3085 putative two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein.


ensembl_gene_id: Rpdx1_3570
symbol: ADU45139.1
gene_biotype: protein_coding
description:
  KEGG: rru:Rru_A1802 chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; SMART: chemotaxis sensory transducer; PAC repeat-containing protein.


ensembl_gene_id: Rpdx1_3571
symbol: ADU45140.1
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; KEGG: bbt:BBta_3078 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.


ensembl_gene_id: Rpdx1_3572
symbol: ADU45141.1
gene_biotype: protein_coding
description:
  SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: protease Do; KEGG: bra:BRADO2741 putative serine protease do-like precursor; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; Belongs to the peptidase S1C family.


ensembl_gene_id: Rpdx1_3575
symbol: ADU45144.1
gene_biotype: protein_coding
description:
  PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: rsh:Rsph17029_3566 cobalamin synthesis protein, P47K.


ensembl_gene_id: Rpdx1_3576
symbol: amiF
gene_biotype: protein_coding
description:
  Formamidase; Is an aliphatic amidase with a restricted substrate specificity, as it only hydrolyzes formamide; Belongs to the carbon-nitrogen hydrolase superfamily. Aliphatic amidase family.


ensembl_gene_id: Rpdx1_3577
symbol: ADU45146.1
gene_biotype: protein_coding
description:
  TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: bbt:BBta_3438 putative secretion protein HlyD precursor.


ensembl_gene_id: Rpdx1_3579
symbol: ADU45148.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_5377 putative ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_3581
symbol: ADU45150.1
gene_biotype: protein_coding
description:
  KEGG: nwi:Nwi_1193 cytochrome c-type biogenesis protein CcmF; TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein.


ensembl_gene_id: Rpdx1_3582
symbol: ccmE
gene_biotype: protein_coding
description:
  CcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.


ensembl_gene_id: Rpdx1_3583
symbol: ADU45152.1
gene_biotype: protein_coding
description:
  TIGRFAM: cytochrome c-type biogenesis protein CcmI; KEGG: bbt:BBta_3071 cytochrome c-type biogenesis protein CycH.


ensembl_gene_id: Rpdx1_3586
symbol: ADU45155.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_1434 periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein.


ensembl_gene_id: Rpdx1_3587
symbol: ADU45156.1
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; KEGG: nha:Nham_1433 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.


ensembl_gene_id: Rpdx1_3595
symbol: ADU45164.1
gene_biotype: protein_coding
description:
  Regulatory protein MarR; KEGG: mno:Mnod_3659 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.


ensembl_gene_id: Rpdx1_3597
symbol: ADU45166.1
gene_biotype: protein_coding
description:
  PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: mrd:Mrad2831_2003 glutathione-dependent formaldehyde-activating GFA.


ensembl_gene_id: Rpdx1_3598
symbol: ADU45167.1
gene_biotype: protein_coding
description:
  TIGRFAM: phage cell wall peptidase, NlpC/P60 family; KEGG: nwi:Nwi_1180 putative phage cell wall peptidase, NlpC/P60.


ensembl_gene_id: Rpdx1_3599
symbol: ADU45168.1
gene_biotype: protein_coding
description:
  PFAM: Phage conserved hypothetical protein, gene transfer agent-like-like; KEGG: nwi:Nwi_1179 hypothetical protein.


ensembl_gene_id: Rpdx1_3601
symbol: ADU45170.1
gene_biotype: protein_coding
description:
  TIGRFAM: acetyl-CoA acetyltransferase; KEGG: xau:Xaut_4665 acetyl-CoA acetyltransferase; PFAM: Thiolase-like; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Rpdx1_3602
symbol: ADU45171.1
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: xau:Xaut_4664 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Rpdx1_3604
symbol: ADU45173.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; KEGG: xau:Xaut_4663 helix-turn-helix domain-containing protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Rpdx1_3605
symbol: ADU45174.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO1260 LuxR family transcriptional regulator; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR.


ensembl_gene_id: Rpdx1_3612
symbol: ADU45181.1
gene_biotype: protein_coding
description:
  TIGRFAM: phage major tail protein, TP901-1 family; KEGG: nha:Nham_1419 phage major tail protein, TP901-1.


ensembl_gene_id: Rpdx1_3616
symbol: ADU45185.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_0650 putative serine protease; PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: peptidase S1 and S6 chymotrypsin/Hap.


ensembl_gene_id: Rpdx1_3623
symbol: ADU45192.1
gene_biotype: protein_coding
description:
  KEGG: sth:STH1310 site-specific DNA-methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.


ensembl_gene_id: Rpdx1_3627
symbol: ADU45196.1
gene_biotype: protein_coding
description:
  TIGRFAM: phage major capsid protein, HK97 family; KEGG: oca:OCAR_6602 phage major capsid protein, HK97 family.


ensembl_gene_id: Rpdx1_3632
symbol: ADU45200.1
gene_biotype: protein_coding
description:
  KEGG: oca:OCAR_6609 phage portal protein, HK97 family; TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein.


ensembl_gene_id: Rpdx1_3636
symbol: ADU45204.1
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: bbt:BBta_3058 major facilitator superfamily permease.


ensembl_gene_id: Rpdx1_3641
symbol: ADU45209.1
gene_biotype: protein_coding
description:
  6-aminohexanoate-dimer hydrolase; KEGG: bra:BRADO4091 putative beta-lactamase family protein; putative 6-aminohexanoate-dimer hydrolase; PFAM: beta-lactamase.


ensembl_gene_id: Rpdx1_3643
symbol: ADU45211.1
gene_biotype: protein_coding
description:
  PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: mch:Mchl_5651 peptidase S8 and S53 subtilisin kexin sedolisin.


ensembl_gene_id: Rpdx1_3645
symbol: ADU45213.1
gene_biotype: protein_coding
description:
  KEGG: rru:Rru_A2395 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.


ensembl_gene_id: Rpdx1_3650
symbol: ADU45217.1
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: bja:blr1050 branched chain amino acid transport system substrate binding protein.


ensembl_gene_id: Rpdx1_3653
symbol: ADU45220.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; KEGG: bja:bll1047 transcriptional regulatory protein; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.


ensembl_gene_id: Rpdx1_3655
symbol: ADU45222.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function UPF0153; KEGG: bja:blr3103 hypothetical protein; Belongs to the UPF0260 family.


ensembl_gene_id: Rpdx1_3656
symbol: ADU45223.1
gene_biotype: protein_coding
description:
  TIGRFAM: penicillin-binding protein, 1A family; KEGG: bra:BRADO2718 putative penicillin-binding protein (MrcA-like); PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase.


ensembl_gene_id: Rpdx1_3666
symbol: ADU45233.1
gene_biotype: protein_coding
description:
  Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; KEGG: bra:BRADO2708 sensor histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein.


ensembl_gene_id: Rpdx1_3671
symbol: ADU45238.1
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mdi:METDI4223 putative short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Rpdx1_3674
symbol: ADU45241.1
gene_biotype: protein_coding
description:
  PFAM: class II aldolase/adducin family protein; KEGG: bra:BRADO2701 aldolase II superfamily protein.


ensembl_gene_id: Rpdx1_3680
symbol: ADU45247.1
gene_biotype: protein_coding
description:
  KEGG: oca:OCAR_4721 ferrichrome receptor FcuA; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.


ensembl_gene_id: Rpdx1_3681
symbol: ADU45248.1
gene_biotype: protein_coding
description:
  PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: nha:Nham_2629 hypothetical protein.


ensembl_gene_id: Rpdx1_3682
symbol: ADU45249.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF853 NPT hydrolase putative; KEGG: bra:BRADO2688 putative ATPase.


ensembl_gene_id: Rpdx1_3685
symbol: ADU45252.1
gene_biotype: protein_coding
description:
  Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.


ensembl_gene_id: Rpdx1_3686
symbol: ADU45253.1
gene_biotype: protein_coding
description:
  Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.


ensembl_gene_id: Rpdx1_3687
symbol: ADU45254.1
gene_biotype: protein_coding
description:
  TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; KEGG: nha:Nham_2635 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK.


ensembl_gene_id: Rpdx1_3689
symbol: ADU45256.1
gene_biotype: protein_coding
description:
  PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: bra:BRADO2681 putative glutathione-dependent formaldehyde-activating (GFA).


ensembl_gene_id: Rpdx1_3690
symbol: ADU45257.1
gene_biotype: protein_coding
description:
  TIGRFAM: methylmalonyl-CoA mutase, large subunit; KEGG: bbt:BBta_3021 methylmalonyl-CoA mutase; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein.


ensembl_gene_id: Rpdx1_3696
symbol: ADU45263.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_3019 arginine/ornithine transport system ATPase; TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein.


ensembl_gene_id: Rpdx1_3697
symbol: ADU45264.1
gene_biotype: protein_coding
description:
  Peptidase C15 pyroglutamyl peptidase I; Removes 5-oxoproline from various penultimate amino acid residues except L-proline.


ensembl_gene_id: Rpdx1_3699
symbol: ADU45266.1
gene_biotype: protein_coding
description:
  PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: azc:AZC_1341 TonB dependent receptor.


ensembl_gene_id: Rpdx1_3701
symbol: ADU45268.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr2506 putative chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer.


ensembl_gene_id: Rpdx1_3704
symbol: ADU45271.1
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: bbt:BBta_3011 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Rpdx1_3705
symbol: ADU45272.1
gene_biotype: protein_coding
description:
  Diguanylate cyclase; SMART: GGDEF domain containing protein; TIGRFAM: diguanylate cyclase; KEGG: bbt:BBta_3010 diguanylate cyclase; PFAM: GGDEF domain containing protein.


ensembl_gene_id: Rpdx1_3707
symbol: ADU45274.1
gene_biotype: protein_coding
description:
  PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: neu:NE2140 TonB-dependent receptor protein.


ensembl_gene_id: Rpdx1_3708
symbol: ADU45275.1
gene_biotype: protein_coding
description:
  PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nha:Nham_2201 TonB-dependent receptor.


ensembl_gene_id: Rpdx1_3711
symbol: ADU45277.1
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: bja:blr3038 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Rpdx1_3713
symbol: ADU45279.1
gene_biotype: protein_coding
description:
  PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bja:bll3036 enoyl CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: Rpdx1_3714
symbol: ADU45280.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_3004 putative outer TolC membrane protein; TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein.


ensembl_gene_id: Rpdx1_3716
symbol: ADU45282.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_2989 putative cation/heavy metal efflux system protein; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: Rpdx1_3717
symbol: ADU45283.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr3031 hypothetical protein; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Rpdx1_3718
symbol: ADU45284.1
gene_biotype: protein_coding
description:
  PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bja:blr3030 hypothetical protein; Belongs to the CoA-transferase III family.


ensembl_gene_id: Rpdx1_3719
symbol: ADU45285.1
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; KEGG: bja:blr4803 two-component hybrid sensor and regulator; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.


ensembl_gene_id: Rpdx1_3720
symbol: ADU45286.1
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; KEGG: bja:blr4802 two-component response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.


ensembl_gene_id: Rpdx1_3725
symbol: ADU45290.1
gene_biotype: protein_coding
description:
  PFAM: ribosomal RNA adenine methylase transferase; KEGG: bja:bll8166 phospholipid N-methyltransferase.


ensembl_gene_id: Rpdx1_3726
symbol: dnaE2
gene_biotype: protein_coding
description:
  DNA polymerase III, alpha subunit; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.


ensembl_gene_id: Rpdx1_3729
symbol: ADU45294.1
gene_biotype: protein_coding
description:
  Radical SAM domain protein; KEGG: nwi:Nwi_2258 elongator protein 3/MiaB/NifB; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: Rpdx1_3730
symbol: ADU45295.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_2983 putative uracil-DNA glycosylase; TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily.


ensembl_gene_id: Rpdx1_3734
symbol: ADU45299.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll7624 adenylate cyclase; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase.


ensembl_gene_id: Rpdx1_3735
symbol: ADU45300.1
gene_biotype: protein_coding
description:
  PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; KEGG: bja:blr2614 hypothetical protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.


ensembl_gene_id: Rpdx1_3738
symbol: ADU45303.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_7084 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.


ensembl_gene_id: Rpdx1_3739
symbol: ADU45304.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: bja:blr7832 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Rpdx1_3740
symbol: ADU45305.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_7086 ABC tranpsorter, permease protein / ATP-binding protein; PFAM: ABC transporter related; inner-membrane translocator; SMART: AAA ATPase; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Rpdx1_3741
symbol: ADU45306.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr7834 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_3742
symbol: ADU45307.1
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dma:DMR_43780 GGDEF domain protein; SMART: GGDEF domain containing protein.


ensembl_gene_id: Rpdx1_3744
symbol: ADU45309.1
gene_biotype: protein_coding
description:
  PFAM: thioesterase superfamily protein; KEGG: bbt:BBta_7090 putative 4-hydroxybenzoyl-CoA thioesterase.


ensembl_gene_id: Rpdx1_3748
symbol: ADU45313.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr7841 hypothetical protein; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit.


ensembl_gene_id: Rpdx1_3750
symbol: ADU45315.1
gene_biotype: protein_coding
description:
  PFAM: Extracellular solute-binding protein, family 7; KEGG: vap:Vapar_3913 TRAP dicarboxylate transporter-DctP subunit.


ensembl_gene_id: Rpdx1_3751
symbol: ADU45316.1
gene_biotype: protein_coding
description:
  TIGRFAM: 4-hydroxybenzoate 3-monooxygenase; KEGG: bja:bll7838 4-hydroxybenzoate 3-monooxygenase; PFAM: monooxygenase FAD-binding.


ensembl_gene_id: Rpdx1_3757
symbol: ADU45322.1
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bra:BRADO2583 putative short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Rpdx1_3760
symbol: ppc
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family.


ensembl_gene_id: Rpdx1_3763
symbol: ADU45328.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bid:Bind_2471 LysR family transcriptional regulator.


ensembl_gene_id: Rpdx1_3764
symbol: ADU45329.1
gene_biotype: protein_coding
description:
  Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; response regulator receiver; KEGG: bja:bll4276 two-component hybrid sensor and regulator; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver.


ensembl_gene_id: Rpdx1_3766
symbol: ADU45331.1
gene_biotype: protein_coding
description:
  PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bja:blr2950 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: Rpdx1_3770
symbol: ADU45335.1
gene_biotype: protein_coding
description:
  PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bra:BRADO2574 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: Rpdx1_3776
symbol: ADU45341.1
gene_biotype: protein_coding
description:
  Hydroxypyruvate isomerase; KEGG: bja:blr2929 hypothetical protein; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the hyi family.


ensembl_gene_id: Rpdx1_3779
symbol: ADU45344.1
gene_biotype: protein_coding
description:
  ABC transporter related protein; KEGG: bra:BRADO2543 high-affinity branched-chain amino acid transport protein (ABC transporter ATP-binding protein); PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_3780
symbol: ADU45345.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr2925 amino acid ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_3781
symbol: ADU45346.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: bbt:BBta_2886 putative ABC transporter permiase component; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Rpdx1_3782
symbol: ADU45347.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: bja:blr2923 amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Rpdx1_3783
symbol: ADU45348.1
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: bra:BRADO2539 putative branched-chain amino acid ABC transporter (substrate-binding protein).


ensembl_gene_id: Rpdx1_3784
symbol: ADU45349.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1445; KEGG: bra:BRADO2538 hypothetical protein; Belongs to the D-glutamate cyclase family.


ensembl_gene_id: Rpdx1_3785
symbol: ADU45350.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bja:bll2920 transcriptional regulatory protein.


ensembl_gene_id: Rpdx1_3786
symbol: ADU45351.1
gene_biotype: protein_coding
description:
  TIGRFAM: amidase, hydantoinase/carbamoylase family; KEGG: bja:bll2919 allantoate amidohydrolase; PFAM: peptidase M20.


ensembl_gene_id: Rpdx1_3787
symbol: ADU45352.1
gene_biotype: protein_coding
description:
  PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bbt:BBta_2880 putative phosphoglycerate dehydrogenase.


ensembl_gene_id: Rpdx1_3789
symbol: ADU45354.1
gene_biotype: protein_coding
description:
  TIGRFAM: tartrate dehydrogenase; KEGG: bja:blr2916 tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase.


ensembl_gene_id: Rpdx1_3790
symbol: ADU45355.1
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: met:M446_4762 extracellular ligand-binding receptor.


ensembl_gene_id: Rpdx1_3792
symbol: ADU45357.1
gene_biotype: protein_coding
description:
  TIGRFAM: beta-galactosidase; KEGG: bja:blr4657 beta-glucosidase; PFAM: glycoside hydrolase family 1.


ensembl_gene_id: Rpdx1_3798
symbol: ADU45363.1
gene_biotype: protein_coding
description:
  Phenylacetic acid degradation protein paaN; KEGG: xau:Xaut_0907 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; TIGRFAM: phenylacetic acid degradation protein paaN; PFAM: Aldehyde Dehydrogenase; MaoC domain protein dehydratase.


ensembl_gene_id: Rpdx1_3799
symbol: ADU45364.1
gene_biotype: protein_coding
description:
  KEGG: mno:Mnod_3363 phenylacetate degradation, enoyl-CoA hydratase PaaB; TIGRFAM: phenylacetate degradation, enoyl-CoA hydratase paaB; PFAM: Enoyl-CoA hydratase/isomerase.


ensembl_gene_id: Rpdx1_3800
symbol: ADU45365.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO2525 phenylacetic acid degradation protein; TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein.


ensembl_gene_id: Rpdx1_3801
symbol: ADU45366.1
gene_biotype: protein_coding
description:
  phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).


ensembl_gene_id: Rpdx1_3803
symbol: ADU45368.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bja:blr7836 transcriptional regulatory protein.


ensembl_gene_id: Rpdx1_3804
symbol: ADU45369.1
gene_biotype: protein_coding
description:
  PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: dar:Daro_1523 pyridoxamine 5'-phosphate oxidase-related, FMN-binding.


ensembl_gene_id: Rpdx1_3807
symbol: ADU45372.1
gene_biotype: protein_coding
description:
  Diguanylate cyclase; SMART: GGDEF domain containing protein; TIGRFAM: diguanylate cyclase; KEGG: msl:Msil_0486 diguanylate cyclase; PFAM: GGDEF domain containing protein.


ensembl_gene_id: Rpdx1_3810
symbol: ADU45375.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_7109 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding.


ensembl_gene_id: Rpdx1_3818
symbol: ADU45383.1
gene_biotype: protein_coding
description:
  PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bra:BRADO0932 putative enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: Rpdx1_3819
symbol: ADU45384.1
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bja:bll7804 3-hydroxyacyl-CoA dehydrogenase type II; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Rpdx1_3821
symbol: ADU45386.1
gene_biotype: protein_coding
description:
  TIGRFAM: acetyl-CoA acetyltransferase; KEGG: bra:BRADO0929 acetyl-CoA acetyltransferase; PFAM: Thiolase-like; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Rpdx1_3830
symbol: ADU45395.1
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: cti:RALTA_A1589 putative transporter, major facilitator superfamily MFS_1.


ensembl_gene_id: Rpdx1_3831
symbol: ADU45396.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr7776 cation efflux system protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE.


ensembl_gene_id: Rpdx1_3836
symbol: ADU45399.1
gene_biotype: protein_coding
description:
  PFAM: Aldehyde Dehydrogenase; KEGG: bja:blr7884 coniferyl aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: Rpdx1_3837
symbol: ADU45400.1
gene_biotype: protein_coding
description:
  Choline dehydrogenase; KEGG: bra:BRADO6420 glucose-methanol-choline oxidoreductase family protein; PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase.


ensembl_gene_id: Rpdx1_3838
symbol: ADU45401.1
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bra:BRADO6422 putative short-chain dehydrogenase/reductase protein; putative 3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase).


ensembl_gene_id: Rpdx1_3839
symbol: ADU45402.1
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbt:BBta_1210 putative 3-oxoacyl-(acyl-carrier-protein) reductase.


ensembl_gene_id: Rpdx1_3840
symbol: ADU45403.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO6997 two-component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR.


ensembl_gene_id: Rpdx1_3843
symbol: ADU45404.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_0529 putative response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver.


ensembl_gene_id: Rpdx1_3844
symbol: ADU45405.1
gene_biotype: protein_coding
description:
  Phosphoketolase; KEGG: pna:Pnap_4497 putative phosphoketolase; PFAM: Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase-like; D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase.


ensembl_gene_id: Rpdx1_3846
symbol: ADU45407.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_5336 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; UspA domain protein; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain.


ensembl_gene_id: Rpdx1_3849
symbol: ADU45410.1
gene_biotype: protein_coding
description:
  TIGRFAM: magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; KEGG: bchE; magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: Rpdx1_3850
symbol: ADU45411.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO1653 4-vinyl protochlorophyllide reductase; TIGRFAM: bacteriochlorophyll 4-vinyl reductase; PFAM: 4-vinyl reductase 4VR.


ensembl_gene_id: Rpdx1_3851
symbol: ADU45412.1
gene_biotype: protein_coding
description:
  TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN domain protein; Radical SAM domain protein; KEGG: jan:Jann_3244 coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB; Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: Rpdx1_3853
symbol: ADU45414.1
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bra:BRADO6298 glyoxalase/bleomycin resistance protein.


ensembl_gene_id: Rpdx1_3857
symbol: ADU45418.1
gene_biotype: protein_coding
description:
  TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; YHS domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: bra:BRADO0147 copper-transporting P-type ATPase; SMART: TRASH domain protein.


ensembl_gene_id: Rpdx1_3859
symbol: ADU45420.1
gene_biotype: protein_coding
description:
  PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: azc:AZC_1071 hypothetical protein.


ensembl_gene_id: Rpdx1_3861
symbol: ADU45422.1
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: nha:Nham_2861 diguanylate cyclase; SMART: GGDEF domain containing protein.


ensembl_gene_id: Rpdx1_3868
symbol: ADU45429.1
gene_biotype: protein_coding
description:
  TIGRFAM: addiction module antidote protein, CC2985 family; KEGG: rce:RC1_0082 transcriptional regulators (CopG/Arc/MetJ DNA-binding domain), putative.


ensembl_gene_id: Rpdx1_3870
symbol: ADU45431.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF214; KEGG: bbt:BBta_1848 putative lipoprotein-releasing system transmembrane protein LolC.


ensembl_gene_id: Rpdx1_3871
symbol: ADU45432.1
gene_biotype: protein_coding
description:
  KEGG: xau:Xaut_4226 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Rpdx1_3875
symbol: ADU45436.1
gene_biotype: protein_coding
description:
  Transglutaminase domain protein; KEGG: abo:ABO_0204 hypothetical protein; PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein.


ensembl_gene_id: Rpdx1_3876
symbol: ADU45437.1
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; hemerythrin-like metal-binding protein; PFAM: GGDEF domain containing protein; Hemerythrin HHE cation binding domain protein; KEGG: nha:Nham_2322 diguanylate cyclase; SMART: GGDEF domain containing protein.


ensembl_gene_id: Rpdx1_3877
symbol: ADU45438.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; KEGG: mlo:mll6710 transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Rpdx1_3881
symbol: ADU45441.1
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; hemerythrin-like metal-binding protein; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; Hemerythrin HHE cation binding domain protein; KEGG: rsq:Rsph17025_2184 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); SMART: GGDEF domain containing protein.


ensembl_gene_id: Rpdx1_3883
symbol: flhA
gene_biotype: protein_coding
description:
  Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.


ensembl_gene_id: Rpdx1_3886
symbol: ADU45446.1
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: bra:BRADO1500 RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2.


ensembl_gene_id: Rpdx1_3888
symbol: ADU45448.1
gene_biotype: protein_coding
description:
  TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; KEGG: bja:blr2201 flagellum-specific ATP synthase; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_3889
symbol: ADU45449.1
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; KEGG: oca:OCAR_7111 cell cycle transcriptional regulator CtrA; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.


ensembl_gene_id: Rpdx1_3890
symbol: ADU45450.1
gene_biotype: protein_coding
description:
  PFAM: MCP methyltransferase CheR-type; KEGG: nha:Nham_3372 MCP methyltransferase, CheR-type; SMART: MCP methyltransferase CheR-type.


ensembl_gene_id: Rpdx1_3892
symbol: ADU45452.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_6557 chemotaxis protein CheY; PFAM: response regulator receiver; SMART: response regulator receiver.


ensembl_gene_id: Rpdx1_3893
symbol: ADU45453.1
gene_biotype: protein_coding
description:
  CheW protein; KEGG: bra:BRADO1474 chemotaxis protein CheW; PFAM: CheW domain protein; SMART: CheW domain protein.


ensembl_gene_id: Rpdx1_3894
symbol: ADU45454.1
gene_biotype: protein_coding
description:
  CheA signal transduction histidine kinase; KEGG: bbt:BBta_0524 chemotaxis protein CheA; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; response regulator receiver; SMART: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; response regulator receiver.


ensembl_gene_id: Rpdx1_3896
symbol: cysQ
gene_biotype: protein_coding
description:
  Inositol monophosphatase; Converts adenosine-3',5'-bisphosphate (PAP) to AMP. Belongs to the inositol monophosphatase superfamily. CysQ family.


ensembl_gene_id: Rpdx1_3904
symbol: ADU45463.1
gene_biotype: protein_coding
description:
  PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein TPP binding domain protein; KEGG: nha:Nham_3384 hypothetical protein.


ensembl_gene_id: Rpdx1_3912
symbol: ADU45471.1
gene_biotype: protein_coding
description:
  PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bra:BRADO1441 formyl-coenzyme A transferase NAD(P)-binding; Belongs to the CoA-transferase III family.


ensembl_gene_id: Rpdx1_3914
symbol: ADU45473.1
gene_biotype: protein_coding
description:
  PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; KEGG: bja:blr7248 benzoylformate decarboxylase; Belongs to the TPP enzyme family.


ensembl_gene_id: Rpdx1_3916
symbol: ADU45475.1
gene_biotype: protein_coding
description:
  Manually curated; PFAM: Appr-1-p processing domain protein; KEGG: bbt:BBta_5392 hypothetical protein; SMART: Appr-1-p processing domain protein.


ensembl_gene_id: Rpdx1_3917
symbol: ADU45476.1
gene_biotype: protein_coding
description:
  Manually curated; TIGRFAM: glutaredoxin-like protein; KEGG: bbt:BBta_5393 putative glutaredoxin family protein; PFAM: glutaredoxin; Belongs to the glutaredoxin family. Monothiol subfamily.


ensembl_gene_id: Rpdx1_3919
symbol: ADU45478.1
gene_biotype: protein_coding
description:
  Methyltransferase; KEGG: nha:Nham_1639 hypothetical protein; TIGRFAM: methyltransferase; PFAM: Protein of unknown function DUF2260.


ensembl_gene_id: Rpdx1_3922
symbol: ADU45481.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF427; KEGG: bbt:BBta_5398 hypothetical protein; manually curated; PFAM: protein of unknown function DUF427.


ensembl_gene_id: Rpdx1_3924
symbol: purL
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase II; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist  [...]


ensembl_gene_id: Rpdx1_3926
symbol: trpB-2
gene_biotype: protein_coding
description:
  Pyridoxal-phosphate dependent TrpB-like enzyme; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.


ensembl_gene_id: Rpdx1_3933
symbol: rpsD
gene_biotype: protein_coding
description:
  Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.


ensembl_gene_id: Rpdx1_3934
symbol: ADU45491.1
gene_biotype: protein_coding
description:
  Threonine aldolase; KEGG: bbt:BBta_5390 putative L-allo-threonine aldolase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase.


ensembl_gene_id: Rpdx1_3935
symbol: ADU45492.1
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bja:bll7251 putative dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Rpdx1_3939
symbol: ADU45496.1
gene_biotype: protein_coding
description:
  Manually curated; PFAM: ferredoxin; adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: bra:BRADO1430 ferredoxin:adenylate/guanylate cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase.


ensembl_gene_id: Rpdx1_3942
symbol: ADU45499.1
gene_biotype: protein_coding
description:
  Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: Rpdx1_3943
symbol: ADU45500.1
gene_biotype: protein_coding
description:
  PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bbt:BBta_6680 acyl-coenzyme A transferase; Belongs to the CoA-transferase III family.


ensembl_gene_id: Rpdx1_3944
symbol: ADU45501.1
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: bja:blr3195 ferredoxin NADP+ reductase.


ensembl_gene_id: Rpdx1_3946
symbol: ADU45503.1
gene_biotype: protein_coding
description:
  PFAM: Glutathione S-transferase domain; KEGG: pla:Plav_3102 glutathione S-transferase domain-containing protein.


ensembl_gene_id: Rpdx1_3947
symbol: ADU45504.1
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: aav:Aave_3336 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Rpdx1_3948
symbol: ADU45505.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, BadM/Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: rcu:RCOM_1954690 hypothetical protein.


ensembl_gene_id: Rpdx1_3952
symbol: ADU45509.1
gene_biotype: protein_coding
description:
  PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: bja:bll7271 carbon monoxide dehydrogenase large chain.


ensembl_gene_id: Rpdx1_3954
symbol: ADU45510.1
gene_biotype: protein_coding
description:
  PFAM: dihydrodipicolinate synthetase; KEGG: bja:bll7272 putative dihydrodipicolinate synthase; Belongs to the DapA family.


ensembl_gene_id: Rpdx1_3955
symbol: ADU45511.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_0542 peptidase S9A family; PFAM: peptidase S9A prolyl oligopeptidase domain protein beta-propeller.


ensembl_gene_id: Rpdx1_3956
symbol: ADU45512.1
gene_biotype: protein_coding
description:
  TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: bja:bll1235 O-acetylhomoserine aminocarboxypropyltransferase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein.


ensembl_gene_id: Rpdx1_3958
symbol: ADU45514.1
gene_biotype: protein_coding
description:
  TIGRFAM: CbbX protein; PFAM: AAA ATPase central domain protein; KEGG: bra:BRADO1661 CbbX-like protein; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_3959
symbol: ADU45515.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_6396 ribulose 1,5-bisphosphate carboxylase small subunit; PFAM: ribulose bisphosphate carboxylase small chain.


ensembl_gene_id: Rpdx1_3960
symbol: cbbL
gene_biotype: protein_coding
description:
  Ribulose-bisphosphate carboxylase; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily.


ensembl_gene_id: Rpdx1_3961
symbol: ADU45517.1
gene_biotype: protein_coding
description:
  Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; CHASE domain protein; histidine kinase A domain protein; response regulator receiver; Hpt domain protein; KEGG: xal:XALc_1974 putative two-component system sensor-response regulator hybrid protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; response regulator receiver.


ensembl_gene_id: Rpdx1_3962
symbol: ADU45518.1
gene_biotype: protein_coding
description:
  KEGG: gem:GM21_1722 histidine kinase; PFAM: response regulator receiver; SMART: response regulator receiver.


ensembl_gene_id: Rpdx1_3963
symbol: ADU45519.1
gene_biotype: protein_coding
description:
  KEGG: mlo:mlr6690 two-component response regulator; PFAM: response regulator receiver; SMART: response regulator receiver.


ensembl_gene_id: Rpdx1_3965
symbol: ADU45521.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: nha:Nham_3755 LysR family transcriptional regulator.


ensembl_gene_id: Rpdx1_3966
symbol: ADU45522.1
gene_biotype: protein_coding
description:
  TIGRFAM: 5-aminolevulinic acid synthase; KEGG: bra:BRADO1651 5-aminolevulinate synthase; PFAM: aminotransferase class I and II.


ensembl_gene_id: Rpdx1_3968
symbol: acsF
gene_biotype: protein_coding
description:
  Magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase; Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME); Belongs to the AcsF family.


ensembl_gene_id: Rpdx1_3972
symbol: ADU45528.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_6411 reaction center protein H chain (photosynthetic reaction center H subunit); TIGRFAM: photosynthetic reaction center H subunit; PFAM: Photosynthetic reaction centre H subunit; PRC-barrel domain protein.


ensembl_gene_id: Rpdx1_3974
symbol: ADU45530.1
gene_biotype: protein_coding
description:
  TIGRFAM: magnesium protoporphyrin O-methyltransferase; KEGG: alv:Alvin_2638 magnesium protoporphyrin O-methyltransferase; PFAM: Magnesium-protoporphyrin IX methyltransferase domain protein.


ensembl_gene_id: Rpdx1_3975
symbol: bchL
gene_biotype: protein_coding
description:
  Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP.


ensembl_gene_id: Rpdx1_3976
symbol: ADU45532.1
gene_biotype: protein_coding
description:
  TIGRFAM: magnesium chelatase, H subunit; KEGG: rce:RC1_2113 magnesium chelatase subunit H; PFAM: CobN/magnesium chelatase.


ensembl_gene_id: Rpdx1_3977
symbol: bchB
gene_biotype: protein_coding
description:
  Light-independent protochlorophyllide reductase, B subunit; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.


ensembl_gene_id: Rpdx1_3978
symbol: bchN
gene_biotype: protein_coding
description:
  Light-independent protochlorophyllide reductase, N subunit; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.


ensembl_gene_id: Rpdx1_3979
symbol: ADU45535.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO1638 2-vinyl bacteriochlorophyllide hydratase; TIGRFAM: 2-vinyl bacteriochlorophyllide hydratase; PFAM: 2-vinyl bacteriochlorophyllide hydratase.


ensembl_gene_id: Rpdx1_3982
symbol: ADU45538.1
gene_biotype: protein_coding
description:
  TIGRFAM: PAS sensor protein; PFAM: PAS fold-2 domain protein; GAF domain protein; Phytochrome central region domain protein; PAS fold domain protein; KEGG: bbt:BBta_6428 bacteriophytochrome; SMART: GAF domain protein.


ensembl_gene_id: Rpdx1_3983
symbol: ADU45539.1
gene_biotype: protein_coding
description:
  TIGRFAM: transcriptional regulator PpsR; PFAM: helix-turn-helix Fis-type; PAS fold-4 domain protein; KEGG: bra:BRADO1629 transcriptional regulator PpsR2; SMART: PAS domain containing protein.


ensembl_gene_id: Rpdx1_3987
symbol: ADU45543.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO1632 geranylgeranyl reductase; TIGRFAM: geranylgeranyl reductase; PFAM: FAD dependent oxidoreductase.


ensembl_gene_id: Rpdx1_3988
symbol: ADU45544.1
gene_biotype: protein_coding
description:
  PFAM: PUCC protein; KEGG: bbt:BBta_6423 light harvesting pigment major facilitator family (MFS) transporter, Bch2-like protein.


ensembl_gene_id: Rpdx1_3989
symbol: ADU45545.1
gene_biotype: protein_coding
description:
  KEGG: alv:Alvin_2645 bacteriochlorophyll/chlorophyll synthetase; TIGRFAM: bacteriochlorophyll/chlorophyll synthetase; PFAM: UbiA prenyltransferase.


ensembl_gene_id: Rpdx1_3990
symbol: ADU45546.1
gene_biotype: protein_coding
description:
  TIGRFAM: transcriptional regulator PpsR; PFAM: helix-turn-helix Fis-type; PAS fold domain protein; PAS fold-4 domain protein; KEGG: rce:RC1_2118 transcriptional regulator CrtJ (homologous to PpsR); SMART: PAS domain containing protein.


ensembl_gene_id: Rpdx1_3991
symbol: ADU45547.1
gene_biotype: protein_coding
description:
  Photosynthetic reaction center, M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.


ensembl_gene_id: Rpdx1_3992
symbol: ADU45548.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_6431 photosynthetic reaction center subunit L; TIGRFAM: photosynthetic reaction center L subunit; PFAM: photosynthetic reaction centre protein.


ensembl_gene_id: Rpdx1_3996
symbol: ADU45552.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO1620 bacteriochlorophyllide reductase Z subunit; TIGRFAM: chlorophyllide reductase subunit Z; PFAM: oxidoreductase/nitrogenase component 1.


ensembl_gene_id: Rpdx1_3997
symbol: ADU45553.1
gene_biotype: protein_coding
description:
  TIGRFAM: chlorophyllide reductase subunit Y; KEGG: bbt:BBta_6436 bacteriochlorophyllide reductase subunit.


ensembl_gene_id: Rpdx1_3998
symbol: ADU45554.1
gene_biotype: protein_coding
description:
  TIGRFAM: chlorophyllide reductase iron protein subunit X; KEGG: mrd:Mrad2831_2818 chlorophyllide reductase iron protein subunit X; PFAM: NifH/frxC-family protein; Belongs to the NifH/BchL/ChlL family.


ensembl_gene_id: Rpdx1_3999
symbol: ADU45555.1
gene_biotype: protein_coding
description:
  Chlorophyll synthesis pathway, BchC; KEGG: rce:RC1_2093 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase, putative; TIGRFAM: chlorophyll synthesis pathway, BchC; PFAM: Alcohol dehydrogenase GroES domain protein.


ensembl_gene_id: Rpdx1_4001
symbol: ADU45557.1
gene_biotype: protein_coding
description:
  PFAM: Polyprenyl synthetase; KEGG: bra:BRADO1615 geranylgeranyl pyrophosphate synthetase (GgpP synthetase) (farnesyltranstransferase); Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: Rpdx1_4002
symbol: ADU45558.1
gene_biotype: protein_coding
description:
  Phytoene desaturase; KEGG: bra:BRADO1614 hydroxyneurosporene and rhodopin dehydrogenase; TIGRFAM: phytoene desaturase; PFAM: FAD dependent oxidoreductase.


ensembl_gene_id: Rpdx1_4004
symbol: ADU45560.1
gene_biotype: protein_coding
description:
  KEGG: nwi:Nwi_1053 excinuclease ABC, C subunit; PFAM: Excinuclease ABC C subunit domain protein; SMART: Excinuclease ABC C subunit domain protein.


ensembl_gene_id: Rpdx1_4009
symbol: ADU45565.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO1610 phytoene dehydrogenase (phytoene desaturase); TIGRFAM: phytoene desaturase; PFAM: amine oxidase.


ensembl_gene_id: Rpdx1_4010
symbol: ADU45566.1
gene_biotype: protein_coding
description:
  Magnesium chelatase accessory protein; KEGG: bra:BRADO1609 putative alpha/beta hydrolase, putative protoporphyrin IX magnesium chelatase BchO-like; TIGRFAM: magnesium chelatase accessory protein; PFAM: alpha/beta hydrolase fold.


ensembl_gene_id: Rpdx1_4012
symbol: hemE
gene_biotype: protein_coding
description:
  Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.


ensembl_gene_id: Rpdx1_4014
symbol: ADU45570.1
gene_biotype: protein_coding
description:
  Magnesium chelatase ATPase subunit D; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.


ensembl_gene_id: Rpdx1_4015
symbol: ADU45571.1
gene_biotype: protein_coding
description:
  Magnesium chelatase ATPase subunit I; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.


ensembl_gene_id: Rpdx1_4016
symbol: ADU45572.1
gene_biotype: protein_coding
description:
  Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.


ensembl_gene_id: Rpdx1_4019
symbol: ADU45575.1
gene_biotype: protein_coding
description:
  PFAM: NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30; KEGG: rce:RC1_2526 hypothetical protein.


ensembl_gene_id: Rpdx1_4020
symbol: ADU45576.1
gene_biotype: protein_coding
description:
  PFAM: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: rce:RC1_0144 coenzyme F420 hydrogenase.


ensembl_gene_id: Rpdx1_4023
symbol: ADU45579.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr1516 RND multidrug efflux transporter; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein.


ensembl_gene_id: Rpdx1_4024
symbol: ADU45580.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr1515 RND multidrug efflux membrane permease; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Rpdx1_4028
symbol: ADU45584.1
gene_biotype: protein_coding
description:
  PFAM: PUCC protein; KEGG: bbt:BBta_3083 chlorophyll major facilitator superfamily (MFS) exporter PucC.


ensembl_gene_id: Rpdx1_4031
symbol: ADU45587.1
gene_biotype: protein_coding
description:
  Multi-sensor signal transduction histidine kinase; KEGG: bbt:BBta_3080 bacteriophytochrome; PFAM: GAF domain protein; PAS fold-2 domain protein; Phytochrome central region domain protein; histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: GAF domain protein; ATP-binding region ATPase domain protein.


ensembl_gene_id: Rpdx1_4032
symbol: ADU45588.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_3079 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR.


ensembl_gene_id: Rpdx1_4033
symbol: ADU45589.1
gene_biotype: protein_coding
description:
  PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bja:blr2779 hypothetical protein; Belongs to the CoA-transferase III family.


ensembl_gene_id: Rpdx1_4037
symbol: ADU45593.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr2389 phosphoglucomutase; TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase.


ensembl_gene_id: Rpdx1_4039
symbol: ADU45595.1
gene_biotype: protein_coding
description:
  KEGG: msl:Msil_3741 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver.


ensembl_gene_id: Rpdx1_4041
symbol: ADU45597.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_5851 ABC transporter ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Rpdx1_4042
symbol: ADU45598.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bra:BRADO5360 molybdenum ABC transporter permease.


ensembl_gene_id: Rpdx1_4043
symbol: ADU45599.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_5853 putative permease protein.


ensembl_gene_id: Rpdx1_4046
symbol: ADU45602.1
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: ddr:Deide_2p01890 putative phosphate ABC transporter, permease component, PstC.


ensembl_gene_id: Rpdx1_4048
symbol: ADU45604.1
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: bbt:BBta_0716 peptide/oligopeptide/nickel ABC transporter substrate-binding protein.


ensembl_gene_id: Rpdx1_4049
symbol: ADU45605.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr1037 ABC transporter permease protein.


ensembl_gene_id: Rpdx1_4050
symbol: ADU45606.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_0718 putative dipeptide/oligopeptide/nickel ABC transporter, permease protein.


ensembl_gene_id: Rpdx1_4051
symbol: ADU45607.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr1039 ABC transporter ATP-binding protein; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Rpdx1_4053
symbol: ADU45609.1
gene_biotype: protein_coding
description:
  Amidohydrolase, AtzE family; KEGG: bbt:BBta_0721 amidase; TIGRFAM: amidohydrolase, AtzE family; PFAM: Amidase.


ensembl_gene_id: Rpdx1_4055
symbol: ADU45611.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_0723 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.


ensembl_gene_id: Rpdx1_4057
symbol: ADU45613.1
gene_biotype: protein_coding
description:
  PFAM: Cl- channel voltage-gated family protein; CBS domain containing protein; KEGG: ret:RHE_CH02492 chloride channel protein.


ensembl_gene_id: Rpdx1_4059
symbol: ilvD
gene_biotype: protein_coding
description:
  TIGRFAM: dihydroxy-acid dehydratase; KEGG: bja:bll4536 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; Belongs to the IlvD/Edd family.


ensembl_gene_id: Rpdx1_4060
symbol: ADU45616.1
gene_biotype: protein_coding
description:
  PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: rlt:Rleg2_2385 cobalamin synthesis protein P47K.


ensembl_gene_id: Rpdx1_4062
symbol: ADU45618.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr3217 NorD protein; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A.


ensembl_gene_id: Rpdx1_4064
symbol: ADU45620.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr3215 nitric oxide reductase subunit B; PFAM: cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.


ensembl_gene_id: Rpdx1_4067
symbol: ADU45623.1
gene_biotype: protein_coding
description:
  PFAM: cytochrome c oxidase subunit III; KEGG: bbt:BBta_2086 NorE protein involved in nitric oxide reduction.


ensembl_gene_id: Rpdx1_4070
symbol: ADU45626.1
gene_biotype: protein_coding
description:
  PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; carboxyl transferase; KEGG: bja:bll7292 pyruvate carboxylase.


ensembl_gene_id: Rpdx1_4072
symbol: ADU45628.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_3435 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Rpdx1_4073
symbol: ADU45629.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_3428 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Rpdx1_4074
symbol: ADU45630.1
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: vei:Veis_3427 extracellular solute-binding protein.


ensembl_gene_id: Rpdx1_4075
symbol: ADU45631.1
gene_biotype: protein_coding
description:
  TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: vei:Veis_3426 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Rpdx1_4076
symbol: ADU45632.1
gene_biotype: protein_coding
description:
  TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: vei:Veis_3425 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Rpdx1_4077
symbol: ADU45633.1
gene_biotype: protein_coding
description:
  KEGG: adg:Adeg_2096 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.


ensembl_gene_id: Rpdx1_4079
symbol: ADU45635.1
gene_biotype: protein_coding
description:
  PFAM: NLPA lipoprotein; KEGG: azl:AZL_d03570 D-methionine transport system substrate-binding protein.


ensembl_gene_id: Rpdx1_4083
symbol: ADU45638.1
gene_biotype: protein_coding
description:
  Lipoprotein, YaeC family; KEGG: bra:BRADO4285 D-methionine ABC transporter protein, periplasmic binding protein; TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein.


ensembl_gene_id: Rpdx1_4084
symbol: ADU45639.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xau:Xaut_1144 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Rpdx1_4085
symbol: metN
gene_biotype: protein_coding
description:
  ABC transporter related protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.


ensembl_gene_id: Rpdx1_4091
symbol: ADU45646.1
gene_biotype: protein_coding
description:
  Efflux transporter, RND family, MFP subunit; KEGG: bbt:BBta_p0060 secretion protein HlyD precursor; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Rpdx1_4092
symbol: ADU45647.1
gene_biotype: protein_coding
description:
  Heavy metal efflux pump, CzcA family; KEGG: bbt:BBta_p0061 RND family outer membrane copper/silver/drug transport protein; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: Rpdx1_4093
symbol: ADU45648.1
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: rec:RHECIAT_PC0000303 putative alcohol dehydrogenase protein.


ensembl_gene_id: Rpdx1_4097
symbol: ADU45652.1
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rec:RHECIAT_PC0000304 putative oxidoreductase protein.


ensembl_gene_id: Rpdx1_4101
symbol: ADU45656.1
gene_biotype: protein_coding
description:
  KEGG: mpo:Mpop_2886 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp.


ensembl_gene_id: Rpdx1_4105
symbol: ADU45660.1
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: nwi:Nwi_2662 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Rpdx1_4110
symbol: ADU45665.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr1080 benzoyl-CoA-dihydrodiol lyase; TIGRFAM: benzoyl-CoA-dihydrodiol lyase; PFAM: Enoyl-CoA hydratase/isomerase.


ensembl_gene_id: Rpdx1_4112
symbol: ADU45667.1
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sti:Sthe_2859 alcohol dehydrogenase zinc-binding domain protein.


ensembl_gene_id: Rpdx1_4113
symbol: ADU45668.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family; KEGG: sil:SPOA0323 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp.


ensembl_gene_id: Rpdx1_4114
symbol: ADU45669.1
gene_biotype: protein_coding
description:
  KEGG: eba:ebA3602 4-hydroxybenzoyl-CoA reductase, beta subunit; TIGRFAM: 4-hydroxybenzoyl-CoA reductase, beta subunit; PFAM: molybdopterin dehydrogenase FAD-binding.


ensembl_gene_id: Rpdx1_4115
symbol: ADU45670.1
gene_biotype: protein_coding
description:
  KEGG: eba:ebA3603 4-hydroxybenzoyl-CoA reductase, alpha subunit; TIGRFAM: 4-hydroxybenzoyl-CoA reductase, alpha subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead.


ensembl_gene_id: Rpdx1_4116
symbol: ADU45671.1
gene_biotype: protein_coding
description:
  KEGG: eba:ebA3604 4-hydroxybenzoyl-CoA reductase, gamma subunit; TIGRFAM: 4-hydroxybenzoyl-CoA reductase, gamma subunit; PFAM: [2Fe-2S]-binding domain protein; ferredoxin.


ensembl_gene_id: Rpdx1_4117
symbol: ADU45672.1
gene_biotype: protein_coding
description:
  benzoate-CoA ligase family; KEGG: bja:blr1077 acetyl-CoA synthetase; TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase.


ensembl_gene_id: Rpdx1_4118
symbol: ADU45673.1
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: lch:Lcho_3653 extracellular ligand-binding receptor.


ensembl_gene_id: Rpdx1_4119
symbol: ADU45674.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: pna:Pnap_1906 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Rpdx1_4120
symbol: ADU45675.1
gene_biotype: protein_coding
description:
  KEGG: xau:Xaut_2704 ABC transporter related; PFAM: ABC transporter related; inner-membrane translocator; SMART: AAA ATPase; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Rpdx1_4121
symbol: ADU45676.1
gene_biotype: protein_coding
description:
  ABC transporter related protein; KEGG: mag:amb2870 ABC-type branched-chain amino acid transport systems, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_4123
symbol: ADU45678.1
gene_biotype: protein_coding
description:
  KEGG: mag:amb3391 transcriptional regulator; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074.


ensembl_gene_id: Rpdx1_4125
symbol: ADU45680.1
gene_biotype: protein_coding
description:
  KEGG: lch:Lcho_3655 benzoate-CoA ligase family; TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase.


ensembl_gene_id: Rpdx1_4126
symbol: ADU45681.1
gene_biotype: protein_coding
description:
  TIGRFAM: benzoyl-CoA reductase, subunit D; CoA-substrate-specific enzyme activase; KEGG: tmz:Tmz1t_2948 benzoyl-CoA reductase, subunit D; PFAM: ATPase BadF/BadG/BcrA/BcrD type.


ensembl_gene_id: Rpdx1_4127
symbol: ADU45682.1
gene_biotype: protein_coding
description:
  TIGRFAM: benzoyl-CoA reductase, subunit A; CoA-substrate-specific enzyme activase; KEGG: mag:amb2139 2-hydroxyglutaryl-CoA dehydratase activator protein; PFAM: ATPase BadF/BadG/BcrA/BcrD type.


ensembl_gene_id: Rpdx1_4128
symbol: ADU45683.1
gene_biotype: protein_coding
description:
  TIGRFAM: benzoyl-CoA reductase, subunit B; KEGG: tmz:Tmz1t_2950 benzoyl-CoA reductase, subunit B; PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component.


ensembl_gene_id: Rpdx1_4129
symbol: ADU45684.1
gene_biotype: protein_coding
description:
  TIGRFAM: benzoyl-CoA reductase, subunit C; KEGG: tmz:Tmz1t_2951 benzoyl-CoA reductase, subunit C; PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component.


ensembl_gene_id: Rpdx1_4130
symbol: ADU45685.1
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: lch:Lcho_2743 alcohol dehydrogenase.


ensembl_gene_id: Rpdx1_4131
symbol: ADU45686.1
gene_biotype: protein_coding
description:
  Manually curated; PFAM: regulatory protein MarR; KEGG: reu:Reut_B3914 MarR family transcriptional regulator; SMART: regulatory protein MarR.


ensembl_gene_id: Rpdx1_4132
symbol: ADU45687.1
gene_biotype: protein_coding
description:
  KEGG: lch:Lcho_1185 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase; TIGRFAM: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Rpdx1_4133
symbol: menB
gene_biotype: protein_coding
description:
  2-ketocyclohexanecarboxyl-CoA hydrolase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily.


ensembl_gene_id: Rpdx1_4134
symbol: ADU45689.1
gene_biotype: protein_coding
description:
  KEGG: reu:Reut_B3917 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal; TIGRFAM: cyclohexanecarboxyl-CoA dehydrogenase; PFAM: acyl-CoA dehydrogenase domain protein.


ensembl_gene_id: Rpdx1_4135
symbol: ADU45690.1
gene_biotype: protein_coding
description:
  KEGG: lch:Lcho_1188 cyclohexanecarboxylate-CoA ligase; TIGRFAM: cyclohexanecarboxylate-CoA ligase; PFAM: AMP-dependent synthetase and ligase.


ensembl_gene_id: Rpdx1_4136
symbol: ADU45691.1
gene_biotype: protein_coding
description:
  PFAM: Enoyl-CoA hydratase/isomerase; KEGG: lch:Lcho_1190 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: Rpdx1_4138
symbol: ADU45693.1
gene_biotype: protein_coding
description:
  Outer membrane adhesin like proteiin; KEGG: amr:AM1_E0108 hypothetical protein; TIGRFAM: outer membrane adhesin like proteiin; PFAM: glycerophosphoryl diester phosphodiesterase; Hemolysin-type calcium-binding region.


ensembl_gene_id: Rpdx1_4139
symbol: ADU45694.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, DeoR family; Manually curated; PFAM: regulatory protein DeoR; KEGG: dat:HRM2_41360 GlpR1; SMART: regulatory protein DeoR.


ensembl_gene_id: Rpdx1_4140
symbol: ADU45695.1
gene_biotype: protein_coding
description:
  PFAM: 5'-Nucleotidase domain protein; Endonuclease/exonuclease/phosphatase; Hemolysin-type calcium-binding region; KEGG: syp:SYNPCC7002_G0067 endonuclease/exonuclease/phosphatase family protein.


ensembl_gene_id: Rpdx1_4141
symbol: ADU45696.1
gene_biotype: protein_coding
description:
  TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; KEGG: met:M446_3382 type I secretion system ATPase; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_4142
symbol: ADU45697.1
gene_biotype: protein_coding
description:
  KEGG: met:M446_3383 HlyD family type I secretion membrane fusion protein; TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein.


ensembl_gene_id: Rpdx1_4143
symbol: ADU45698.1
gene_biotype: protein_coding
description:
  Rare lipoprotein A; KEGG: bbt:BBta_0545 putative nuclease-like protein; PFAM: Rare lipoprotein A; nuclease (SNase domain protein); SMART: nuclease (SNase domain protein).


ensembl_gene_id: Rpdx1_4145
symbol: ADU45700.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO5893 putative N-methyltransferase; putative phosphatidylethanolamine or menaquinone biosynthesis methyltransferase (UbiE); PFAM: Methyltransferase type 11.


ensembl_gene_id: Rpdx1_4146
symbol: mnmA
gene_biotype: protein_coding
description:
  tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.


ensembl_gene_id: Rpdx1_4147
symbol: ADU45702.1
gene_biotype: protein_coding
description:
  PFAM: Flagellar hook-length control protein-like, C-terminal domain; KEGG: bja:blr6996 hypothetical protein.


ensembl_gene_id: Rpdx1_4148
symbol: ADU45703.1
gene_biotype: protein_coding
description:
  Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.


ensembl_gene_id: Rpdx1_4151
symbol: ADU45706.1
gene_biotype: protein_coding
description:
  Intracellular protease, PfpI family; KEGG: bbt:BBta_4318 putative intracellular proteinase; TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein.


ensembl_gene_id: Rpdx1_4152
symbol: ADU45707.1
gene_biotype: protein_coding
description:
  PFAM: Cupin 2 conserved barrel domain protein; KEGG: cti:RALTA_A1510 conserved hypothetical protein, RmlC-like cupin domain.


ensembl_gene_id: Rpdx1_4153
symbol: ADU45708.1
gene_biotype: protein_coding
description:
  KEGG: ccs:CCNA_01509 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein.


ensembl_gene_id: Rpdx1_4154
symbol: ADU45709.1
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: xau:Xaut_2588 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Rpdx1_4155
symbol: ADU45710.1
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: tmz:Tmz1t_2273 diguanylate cyclase; SMART: GGDEF domain containing protein; histidine kinase HAMP region domain protein.


ensembl_gene_id: Rpdx1_4156
symbol: ADU45711.1
gene_biotype: protein_coding
description:
  KEGG: mpo:Mpop_4695 signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; SMART: ATP-binding region ATPase domain protein.


ensembl_gene_id: Rpdx1_4158
symbol: ADU45712.1
gene_biotype: protein_coding
description:
  Plasmid maintenance system antidote protein, XRE family; TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: neu:NE1365 helix-hairpin-helix DNA-binding motif-containing protein; SMART: helix-turn-helix domain protein.


ensembl_gene_id: Rpdx1_4161
symbol: rpoD
gene_biotype: protein_coding
description:
  RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.


ensembl_gene_id: Rpdx1_4162
symbol: dnaG
gene_biotype: protein_coding
description:
  DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family.


ensembl_gene_id: Rpdx1_4170
symbol: carA
gene_biotype: protein_coding
description:
  KEGG: bja:blr7371 carbamoyl phosphate synthase small subunit; TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase small chain; Belongs to the CarA family.


ensembl_gene_id: Rpdx1_4173
symbol: ADU45727.1
gene_biotype: protein_coding
description:
  PFAM: Ferritin Dps family protein; KEGG: bra:BRADO1329 putative DNA-binding stress protein (oxydative damage protectant); Belongs to the Dps family.


ensembl_gene_id: Rpdx1_4174
symbol: ADU45728.1
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 12; KEGG: bbt:BBta_6798 putative S-adenosyl-L-methionine-dependent methyltransferase.


ensembl_gene_id: Rpdx1_4176
symbol: ADU45730.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll5557 hypothetical protein; PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein.


ensembl_gene_id: Rpdx1_4180
symbol: ADU45733.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_0687 two component, sigma54 specific, fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: AAA ATPase; response regulator receiver.


ensembl_gene_id: Rpdx1_4181
symbol: ADU45734.1
gene_biotype: protein_coding
description:
  Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.


ensembl_gene_id: Rpdx1_4183
symbol: ADU45736.1
gene_biotype: protein_coding
description:
  Flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.


ensembl_gene_id: Rpdx1_4184
symbol: ADU45737.1
gene_biotype: protein_coding
description:
  Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.


ensembl_gene_id: Rpdx1_4189
symbol: ADU45742.1
gene_biotype: protein_coding
description:
  KEGG: pde:Pden_5102 ATPase, P-type (transporting), HAD superfamily, subfamily IC; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase.


ensembl_gene_id: Rpdx1_4191
symbol: cobS-2
gene_biotype: protein_coding
description:
  Cobalamin 5'-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.


ensembl_gene_id: Rpdx1_4192
symbol: ADU45745.1
gene_biotype: protein_coding
description:
  Regulatory protein, FmdB family; KEGG: bbt:BBta_0660 putative formamidase regulatory protein FmdB; TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB.


ensembl_gene_id: Rpdx1_4193
symbol: ADU45746.1
gene_biotype: protein_coding
description:
  Formamidase; KEGG: bbt:BBta_0659 formamidase (formamide amidohydrolase); PFAM: Acetamidase/Formamidase.


ensembl_gene_id: Rpdx1_4194
symbol: ADU45747.1
gene_biotype: protein_coding
description:
  TIGRFAM: urea ABC transporter, ATP-binding protein UrtE; PFAM: ABC transporter related; KEGG: bbt:BBta_0658 putative branched-chain amino acid ABC transporter ATP-binding protein; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_4195
symbol: ADU45748.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr0970 ABC transporter ATP-binding protein; TIGRFAM: urea ABC transporter, ATP-binding protein UrtD; PFAM: ABC transporter related.


ensembl_gene_id: Rpdx1_4196
symbol: ADU45749.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr0969 ABC transporter permease protein; TIGRFAM: urea ABC transporter, permease protein UrtC; PFAM: inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Rpdx1_4197
symbol: ADU45750.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr0968 ABC transporter permease protein; TIGRFAM: urea ABC transporter, permease protein UrtB; PFAM: inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Rpdx1_4198
symbol: ADU45751.1
gene_biotype: protein_coding
description:
  TIGRFAM: urea ABC transporter, urea binding protein; KEGG: bra:BRADO6897 branched chain amino-acid ABC transporter substrate-binding protein.


ensembl_gene_id: Rpdx1_4199
symbol: ADU45752.1
gene_biotype: protein_coding
description:
  Integral membrane sensor hybrid histidine kinase; KEGG: bja:bll0966 two-component hybrid sensor and regulator; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver.


ensembl_gene_id: Rpdx1_4200
symbol: ADU45753.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO6899 CheY/LuxR family two-component transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR.


ensembl_gene_id: Rpdx1_4201
symbol: ADU45754.1
gene_biotype: protein_coding
description:
  Ribonuclease BN; Manually curated; TIGRFAM: ribonuclease BN; KEGG: bja:blr7476 hypothetical protein; PFAM: ribonuclease BN.


ensembl_gene_id: Rpdx1_4213
symbol: ADU45766.1
gene_biotype: protein_coding
description:
  Phenylacetate--CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).


ensembl_gene_id: Rpdx1_4214
symbol: ADU45767.1
gene_biotype: protein_coding
description:
  PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: ddf:DEFDS_0925 2-oxoglutarate ferredoxin oxidoreductase subunit gamma.


ensembl_gene_id: Rpdx1_4215
symbol: ADU45768.1
gene_biotype: protein_coding
description:
  PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: dap:Dacet_2341 thiamine pyrophosphate protein domain protein TPP-binding protein.


ensembl_gene_id: Rpdx1_4216
symbol: ADU45769.1
gene_biotype: protein_coding
description:
  PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: pth:PTH_0847 pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit.


ensembl_gene_id: Rpdx1_4217
symbol: ADU45770.1
gene_biotype: protein_coding
description:
  KEGG: swo:Swol_1195 indolepyruvate oxidoreductase subunit beta; PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain.


ensembl_gene_id: Rpdx1_4221
symbol: ADU45773.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO5085 putative ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_4223
symbol: ADU45775.1
gene_biotype: protein_coding
description:
  PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: nha:Nham_1314 mandelate racemase/muconate lactonizing enzyme.


ensembl_gene_id: Rpdx1_4224
symbol: ADU45776.1
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: bja:bll5896 putative 3-phenylpropionic acid transporter.


ensembl_gene_id: Rpdx1_4226
symbol: ADU45778.1
gene_biotype: protein_coding
description:
  PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: bra:BRADO5091 putative threonine dehydratase.


ensembl_gene_id: Rpdx1_4230
symbol: ADU45782.1
gene_biotype: protein_coding
description:
  TIGRFAM: phosphomethylpyrimidine kinase; KEGG: bja:bll5905 phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1.


ensembl_gene_id: Rpdx1_4231
symbol: ADU45783.1
gene_biotype: protein_coding
description:
  PFAM: Transcription regulator AsnC-type-like; KEGG: nha:Nham_1309 AsnC family transcriptional regulator.


ensembl_gene_id: Rpdx1_4234
symbol: ADU45786.1
gene_biotype: protein_coding
description:
  PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: bra:BRADO5140 putative aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein.


ensembl_gene_id: Rpdx1_4238
symbol: ADU45790.1
gene_biotype: protein_coding
description:
  PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: bbt:BBta_5614 putative aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: Rpdx1_4239
symbol: ADU45791.1
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bja:bll5918 putative dehydrogenase.


ensembl_gene_id: Rpdx1_4242
symbol: ADU45794.1
gene_biotype: protein_coding
description:
  PFAM: Glycosyl transferase, family 4, conserved region; KEGG: bbt:BBta_5665 putative undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase.


ensembl_gene_id: Rpdx1_4243
symbol: ADU45795.1
gene_biotype: protein_coding
description:
  PFAM: polysaccharide biosynthesis protein CapD; KEGG: bja:bll5925 putative capsular polysaccharide biosynthesis protein.


ensembl_gene_id: Rpdx1_4244
symbol: hldE
gene_biotype: protein_coding
description:
  rfaE bifunctional protein; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: Rpdx1_4245
symbol: hldD
gene_biotype: protein_coding
description:
  ADP-L-glycero-D-manno-heptose-6-epimerase; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose; Belongs to the NAD(P)-dependent epimerase/dehydratase family. HldD subfamily.


ensembl_gene_id: Rpdx1_4246
symbol: ADU45798.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO5203 ADP-heptose--LPS heptosyltransferase II; TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9.


ensembl_gene_id: Rpdx1_4247
symbol: gmhA
gene_biotype: protein_coding
description:
  Sugar isomerase (SIS); Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.


ensembl_gene_id: Rpdx1_4248
symbol: ADU45800.1
gene_biotype: protein_coding
description:
  KEGG: oca:OCAR_5331 D,D-heptose 1,7-bisphosphate phosphatase; TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Haloacid dehalogenase domain protein hydrolase.


ensembl_gene_id: Rpdx1_4249
symbol: ADU45801.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_1294 lipopolysaccharide heptosyltransferase I; TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase family 9.


ensembl_gene_id: Rpdx1_4250
symbol: ADU45802.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr5931 UDP-galactose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.


ensembl_gene_id: Rpdx1_4251
symbol: ADU45803.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_1292 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_4256
symbol: ADU45808.1
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dar:Daro_2825 PAS:GGDEF; SMART: GGDEF domain containing protein.


ensembl_gene_id: Rpdx1_4257
symbol: ADU45809.1
gene_biotype: protein_coding
description:
  DEAD/DEAH box helicase domain protein; KEGG: bbt:BBta_4919 putative DEAD-box cold-shock protein, ATP-independent RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase; helicase domain protein; Belongs to the DEAD box helicase family.


ensembl_gene_id: Rpdx1_4260
symbol: ADU45812.1
gene_biotype: protein_coding
description:
  Secreted repeat-containing protein; PFAM: Secreted repeat of unknown function; KEGG: oca:OCAR_6987 secreted repeat protein.


ensembl_gene_id: Rpdx1_4261
symbol: ADU45813.1
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: mea:Mex_1p1232 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Rpdx1_4265
symbol: ADU45817.1
gene_biotype: protein_coding
description:
  KEGG: spe:Spro_2132 ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_4266
symbol: ADU45818.1
gene_biotype: protein_coding
description:
  PFAM: periplasmic solute binding protein; KEGG: hit:NTHI0481 putative periplasmic chelated iron binding protein; Belongs to the bacterial solute-binding protein 9 family.


ensembl_gene_id: Rpdx1_4268
symbol: ADU45820.1
gene_biotype: protein_coding
description:
  Iron (metal) dependent repressor, DtxR family; KEGG: bbt:BBta_1555 manganese transport regulator MntR; PFAM: iron dependent repressor; SMART: iron dependent repressor.


ensembl_gene_id: Rpdx1_4271
symbol: ADU45823.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_0510 LysR family transcriptional regulator.


ensembl_gene_id: Rpdx1_4274
symbol: ahcY
gene_biotype: protein_coding
description:
  Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.


ensembl_gene_id: Rpdx1_4275
symbol: ADU45827.1
gene_biotype: protein_coding
description:
  TIGRFAM: S-adenosylmethionine synthetase; KEGG: bbt:BBta_5699 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; Belongs to the AdoMet synthase family.


ensembl_gene_id: Rpdx1_4277
symbol: ADU45829.1
gene_biotype: protein_coding
description:
  TIGRFAM: nucleotide sugar dehydrogenase; KEGG: bja:bll8129 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase.


ensembl_gene_id: Rpdx1_4278
symbol: ADU45830.1
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: xau:Xaut_0893 extracellular ligand-binding receptor.


ensembl_gene_id: Rpdx1_4279
symbol: ADU45831.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: xau:Xaut_0892 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Rpdx1_4280
symbol: ADU45832.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: xau:Xaut_0891 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Rpdx1_4283
symbol: ADU45835.1
gene_biotype: protein_coding
description:
  PFAM: Methionine synthase vitamin-B12 independent; KEGG: bbt:BBta_5702 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase.


ensembl_gene_id: Rpdx1_4284
symbol: ADU45836.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll5949 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_4285
symbol: ADU45837.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll5950 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_4286
symbol: ADU45838.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: bja:bll5951 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Rpdx1_4287
symbol: ADU45839.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: bra:BRADO5253 putative high-affinity branched-chain amino acid transport system permease protein.


ensembl_gene_id: Rpdx1_4288
symbol: ADU45840.1
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: bra:BRADO5254 branched chain amino acid ABC transporter.


ensembl_gene_id: Rpdx1_4290
symbol: purU
gene_biotype: protein_coding
description:
  Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).


ensembl_gene_id: Rpdx1_4291
symbol: ADU45843.1
gene_biotype: protein_coding
description:
  PFAM: Uroporphyrinogen III synthase HEM4; KEGG: bbt:BBta_5710 putative uroporphyrinogen-III synthase.


ensembl_gene_id: Rpdx1_4293
symbol: ADU45845.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: mno:Mnod_0225 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Rpdx1_4294
symbol: ADU45846.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: mno:Mnod_0224 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Rpdx1_4297
symbol: ADU45849.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; KEGG: bja:bll4578 transcriptional regulatory protein; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; SMART: regulatory protein MerR.


ensembl_gene_id: Rpdx1_4301
symbol: ADU45853.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr5962 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_4302
symbol: ADU45854.1
gene_biotype: protein_coding
description:
  PFAM: AMP-dependent synthetase and ligase; KEGG: bja:blr5963 putative long-chain-fatty-acid--CoA ligase.


ensembl_gene_id: Rpdx1_4303
symbol: ADU45855.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: bja:blr5964 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Rpdx1_4304
symbol: ADU45856.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: bja:blr5965 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Rpdx1_4306
symbol: ADU45858.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr5967 ABC transporter substrate-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_4308
symbol: ADU45860.1
gene_biotype: protein_coding
description:
  Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.


ensembl_gene_id: Rpdx1_4311
symbol: ADU45863.1
gene_biotype: protein_coding
description:
  KEGG: eta:ETA_13390 O-antigen ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_4313
symbol: ADU45865.1
gene_biotype: protein_coding
description:
  TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: ara:Arad_4847 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.


ensembl_gene_id: Rpdx1_4317
symbol: ADU45869.1
gene_biotype: protein_coding
description:
  dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.


ensembl_gene_id: Rpdx1_4318
symbol: ADU45870.1
gene_biotype: protein_coding
description:
  KEGG: ara:Arad_4837 dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.


ensembl_gene_id: Rpdx1_4324
symbol: ADU45876.1
gene_biotype: protein_coding
description:
  dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.


ensembl_gene_id: Rpdx1_4325
symbol: gmd
gene_biotype: protein_coding
description:
  GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.


ensembl_gene_id: Rpdx1_4326
symbol: ADU45878.1
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; KEGG: gox:GOX1611 GDP-6-deoxy-D-lyxo-4-hexulose reductase.


ensembl_gene_id: Rpdx1_4331
symbol: msrB
gene_biotype: protein_coding
description:
  TIGRFAM: methionine-R-sulfoxide reductase; KEGG: nha:Nham_1128 methionine sulfoxide reductase B; PFAM: Methionine sulfoxide reductase B; Belongs to the MsrB Met sulfoxide reductase family.


ensembl_gene_id: Rpdx1_4332
symbol: msrA
gene_biotype: protein_coding
description:
  Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.


ensembl_gene_id: Rpdx1_4333
symbol: carB
gene_biotype: protein_coding
description:
  KEGG: oca:OCAR_5131 carbamoyl phosphate synthase large subunit; TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; MGS domain protein; Belongs to the CarB family.


ensembl_gene_id: Rpdx1_4334
symbol: greA
gene_biotype: protein_coding
description:
  GreA/GreB family elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.


ensembl_gene_id: Rpdx1_4336
symbol: ADU45888.1
gene_biotype: protein_coding
description:
  KEGG: nwi:Nwi_2452 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type.


ensembl_gene_id: Rpdx1_4337
symbol: ADU45889.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr7381 thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Rpdx1_4338
symbol: ADU45890.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bra:BRADO1320 LysR family transcriptional regulator.


ensembl_gene_id: Rpdx1_4344
symbol: ADU45896.1
gene_biotype: protein_coding
description:
  TIGRFAM: PAS sensor protein; PFAM: histidine kinase A domain protein; PAS fold domain protein; ATP-binding region ATPase domain protein; KEGG: bja:blr7396 two-component hybrid sensor and regulator; SMART: histidine kinase A domain protein; PAS domain containing protein; ATP-binding region ATPase domain protein.


ensembl_gene_id: Rpdx1_4347
symbol: ADU45899.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family; KEGG: bja:blr7084 transcriptional regulatory protein; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp.


ensembl_gene_id: Rpdx1_4349
symbol: ADU45901.1
gene_biotype: protein_coding
description:
  TIGRFAM: nitrite reductase, copper-containing; KEGG: bbt:BBta_6826 copper-containing nitrite reductase (NO-forming) NirK; PFAM: multicopper oxidase type 1; multicopper oxidase type 3; Belongs to the multicopper oxidase family.


ensembl_gene_id: Rpdx1_4351
symbol: ADU45903.1
gene_biotype: protein_coding
description:
  TIGRFAM: thymidine phosphorylase; KEGG: bja:bll3117 thymidine phosphorylase; PFAM: Pyrimidine nucleoside phosphorylase domain; glycosyl transferase family 3.


ensembl_gene_id: Rpdx1_4352
symbol: ADU45904.1
gene_biotype: protein_coding
description:
  TIGRFAM: ribose-phosphate pyrophosphokinase; KEGG: nha:Nham_1899 phosphoribosylpyrophosphate synthetase; PFAM: phosphoribosyltransferase.


ensembl_gene_id: Rpdx1_4355
symbol: ADU45907.1
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: oca:OCAR_5119 extracellular solute-binding protein, family 1.


ensembl_gene_id: Rpdx1_4356
symbol: ADU45908.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oca:OCAR_5118 ferric iron uptake ABC transporter (FeT) family, permease protein.


ensembl_gene_id: Rpdx1_4358
symbol: rutD
gene_biotype: protein_coding
description:
  Pyrimidine utilization protein D; May increase the rate of spontaneous hydrolysis of aminoacrylate to malonic semialdehyde. Required to remove a toxic intermediate produce in the pyrimidine nitrogen degradation. Belongs to the AB hydrolase superfamily. Hydrolase RutD family.


ensembl_gene_id: Rpdx1_4359
symbol: ADU45911.1
gene_biotype: protein_coding
description:
  KEGG: azc:AZC_2497 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_4361
symbol: ADU45913.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_2495 ABC transporter permease protein.


ensembl_gene_id: Rpdx1_4362
symbol: ADU45914.1
gene_biotype: protein_coding
description:
  Pyrimidine utilization protein C; KEGG: mrd:Mrad2831_1582 endoribonuclease L-PSP; TIGRFAM: pyrimidine utilization protein C; PFAM: Endoribonuclease L-PSP; Belongs to the RutC family.


ensembl_gene_id: Rpdx1_4365
symbol: ADU45917.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mrd:Mrad2831_4382 LysR family transcriptional regulator.


ensembl_gene_id: Rpdx1_4367
symbol: ADU45919.1
gene_biotype: protein_coding
description:
  TIGRFAM: 3-oxoacid CoA-transferase, B subunit; KEGG: bra:BRADO1224 acetyl-CoA:acetoacetyl-CoA transferase, beta subunit; PFAM: coenzyme A transferase.


ensembl_gene_id: Rpdx1_4368
symbol: ADU45920.1
gene_biotype: protein_coding
description:
  TIGRFAM: 3-oxoacid CoA-transferase, A subunit; KEGG: bbt:BBta_6830 acetyl-CoA/acetoacetyl-CoA transferase, alpha subunit; PFAM: coenzyme A transferase.


ensembl_gene_id: Rpdx1_4370
symbol: ADU45922.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:bll7103 ABC transporter permease protein.


ensembl_gene_id: Rpdx1_4371
symbol: ADU45923.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:bll7104 ABC transporter permease protein.


ensembl_gene_id: Rpdx1_4372
symbol: potA
gene_biotype: protein_coding
description:
  Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.


ensembl_gene_id: Rpdx1_4374
symbol: ADU45926.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mka:MK0602 nitrate/sulfonate/bicarbonate ABC transporter permease.


ensembl_gene_id: Rpdx1_4376
symbol: ADU45928.1
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: mrd:Mrad2831_6160 aliphatic sulfonate ABC transporter periplasmic ligand-binding protein.


ensembl_gene_id: Rpdx1_4378
symbol: ADU45930.1
gene_biotype: protein_coding
description:
  PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sfu:Sfum_2312 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.


ensembl_gene_id: Rpdx1_4379
symbol: ADU45931.1
gene_biotype: protein_coding
description:
  Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: bra:BRADO1213 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein.


ensembl_gene_id: Rpdx1_4380
symbol: ADU45932.1
gene_biotype: protein_coding
description:
  PFAM: FAD dependent oxidoreductase; KEGG: bra:BRADO1212 NAD binding site:FAD dependent oxidoreductase.


ensembl_gene_id: Rpdx1_4384
symbol: ADU45935.1
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: nha:Nham_1237 diguanylate cyclase; SMART: GGDEF domain containing protein.


ensembl_gene_id: Rpdx1_4385
symbol: purE
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).


ensembl_gene_id: Rpdx1_4386
symbol: purK
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, ATPase subunit; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).


ensembl_gene_id: Rpdx1_4387
symbol: rpsU-2
gene_biotype: protein_coding
description:
  KEGG: oca:OCAR_5101 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.


ensembl_gene_id: Rpdx1_4390
symbol: ADU45941.1
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bbt:BBta_3517 hypothetical protein.


ensembl_gene_id: Rpdx1_4391
symbol: ADU45942.1
gene_biotype: protein_coding
description:
  NAD(P)(+) transhydrogenase (AB-specific); The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.


ensembl_gene_id: Rpdx1_4393
symbol: ADU45944.1
gene_biotype: protein_coding
description:
  NAD(P)(+) transhydrogenase (AB-specific); KEGG: bja:bll7126 NAD(P)+ transhydrogenase; PFAM: alanine dehydrogenase/PNT domain protein.


ensembl_gene_id: Rpdx1_4395
symbol: ADU45946.1
gene_biotype: protein_coding
description:
  Death-on-curing family protein; KEGG: bbt:BBta_6860 putative death on curing protein; TIGRFAM: death-on-curing family protein; PFAM: filamentation induced by cAMP protein Fic.


ensembl_gene_id: Rpdx1_4397
symbol: ADU45948.1
gene_biotype: protein_coding
description:
  Oligoendopeptidase, pepF/M3 family; KEGG: bbt:BBta_6862 putative oligoendopeptidase F; TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F.


ensembl_gene_id: Rpdx1_4399
symbol: ADU45950.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_1224 two component, sigma54 specific, fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase.


ensembl_gene_id: Rpdx1_4400
symbol: ADU45951.1
gene_biotype: protein_coding
description:
  PFAM: ErfK/YbiS/YcfS/YnhG family protein; Peptidoglycan-binding domain 1 protein; KEGG: bja:blr7131 hypothetical protein.


ensembl_gene_id: Rpdx1_4405
symbol: ADU45956.1
gene_biotype: protein_coding
description:
  TIGRFAM: pyruvate kinase; KEGG: bra:BRADO1185 pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; Belongs to the pyruvate kinase family.


ensembl_gene_id: Rpdx1_4409
symbol: ADU45960.1
gene_biotype: protein_coding
description:
  TIGRFAM: peroxiredoxin, OsmC subfamily; KEGG: azc:AZC_1807 OsmC-like protein; PFAM: OsmC family protein.


ensembl_gene_id: Rpdx1_4411
symbol: rpmJ
gene_biotype: protein_coding
description:
  TIGRFAM: ribosomal protein L36; KEGG: nha:Nham_1214 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.


ensembl_gene_id: Rpdx1_4413
symbol: ADU45964.1
gene_biotype: protein_coding
description:
  TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; KEGG: bbt:BBta_1654 2-haloacid dehalogenase; PFAM: Haloacid dehalogenase domain protein hydrolase.


ensembl_gene_id: Rpdx1_4414
symbol: ADU45965.1
gene_biotype: protein_coding
description:
  PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: bbt:BBta_1653 putative YbaK-like protein.


ensembl_gene_id: Rpdx1_4415
symbol: ADU45966.1
gene_biotype: protein_coding
description:
  PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pde:Pden_3538 TRAP dicarboxylate family transporter DctQ subunit.


ensembl_gene_id: Rpdx1_4416
symbol: ADU45967.1
gene_biotype: protein_coding
description:
  KEGG: bpt:Bpet1218 TrapT family protein; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit.


ensembl_gene_id: Rpdx1_4419
symbol: ADU45970.1
gene_biotype: protein_coding
description:
  KEGG: azl:AZL_007500 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer.


ensembl_gene_id: Rpdx1_4420
symbol: ADU45971.1
gene_biotype: protein_coding
description:
  TIGRFAM: PAS sensor protein; PFAM: PAS fold domain protein; KEGG: azl:AZL_007490 chemotaxis sensory transducer; SMART: PAS domain containing protein.


ensembl_gene_id: Rpdx1_4422
symbol: ADU45973.1
gene_biotype: protein_coding
description:
  PFAM: virulence factor MVIN family protein; polysaccharide biosynthesis protein; KEGG: nha:Nham_3553 polysaccharide biosynthesis protein.


ensembl_gene_id: Rpdx1_4423
symbol: ADU45974.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_3554 3-hydroxybutyrate dehydrogenase; TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Rpdx1_4426
symbol: ADU45977.1
gene_biotype: protein_coding
description:
  KEGG: met:M446_4572 glutamate--ammonia ligase; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp.


ensembl_gene_id: Rpdx1_4428
symbol: glsA
gene_biotype: protein_coding
description:
  TIGRFAM: Glutaminase, core; KEGG: mno:Mnod_4504 glutaminase, core; PFAM: Glutaminase, core; Belongs to the glutaminase family.


ensembl_gene_id: Rpdx1_4430
symbol: ADU45981.1
gene_biotype: protein_coding
description:
  PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: bja:blr1479 ferredoxin-nitrite reductase.


ensembl_gene_id: Rpdx1_4432
symbol: ADU45983.1
gene_biotype: protein_coding
description:
  uroporphyrin-III C-methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.


ensembl_gene_id: Rpdx1_4433
symbol: ADU45984.1
gene_biotype: protein_coding
description:
  KEGG: oan:Oant_1854 sulfate ABC transporter, periplasmic sulfate-binding protein; TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1.


ensembl_gene_id: Rpdx1_4435
symbol: ADU45986.1
gene_biotype: protein_coding
description:
  KEGG: azc:AZC_3734 sulfate ABC transporter permease protein; TIGRFAM: sulfate ABC transporter, inner membrane subunit CysW; sulfate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Rpdx1_4436
symbol: glcB
gene_biotype: protein_coding
description:
  Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.


ensembl_gene_id: Rpdx1_4437
symbol: ADU45988.1
gene_biotype: protein_coding
description:
  PFAM: CsbD family protein; KEGG: ret:RHE_CH01802 hypothetical protein; Belongs to the UPF0337 (CsbD) family.


ensembl_gene_id: Rpdx1_4443
symbol: ADU45994.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll7795 two-component response regulator; PFAM: response regulator receiver; SMART: response regulator receiver.


ensembl_gene_id: Rpdx1_4445
symbol: ADU45996.1
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: bja:blr7797 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Rpdx1_4447
symbol: ureG
gene_biotype: protein_coding
description:
  Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.


ensembl_gene_id: Rpdx1_4450
symbol: ADU46001.1
gene_biotype: protein_coding
description:
  Nitrate reductase; KEGG: bbt:BBta_5740 putative dimethyl sulfoxide reductase(DMSO reductase); PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: Rpdx1_4452
symbol: ADU46003.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family; KEGG: bja:bll6061 transcriptional regulatory protein; PFAM: regulatory protein Crp; cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp.


ensembl_gene_id: Rpdx1_4454
symbol: ADU46005.1
gene_biotype: protein_coding
description:
  PFAM: Mammalian cell entry related domain protein; protein of unknown function DUF330; KEGG: nha:Nham_1923 hypothetical protein.


ensembl_gene_id: Rpdx1_4455
symbol: ADU46006.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll6064 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_4459
symbol: ADU46010.1
gene_biotype: protein_coding
description:
  PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: bja:bll6068 hypothetical protein.


ensembl_gene_id: Rpdx1_4460
symbol: ADU46011.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO2437 hypothetical protein; PFAM: CBS domain containing protein; SMART: CBS domain containing protein.


ensembl_gene_id: Rpdx1_4462
symbol: ADU46013.1
gene_biotype: protein_coding
description:
  PFAM: Poly-beta-hydroxybutyrate polymerase domain protein; alpha/beta hydrolase fold; KEGG: bja:bll6073 poly-beta-hydroxybutyrate polymerase.


ensembl_gene_id: Rpdx1_4465
symbol: ADU46016.1
gene_biotype: protein_coding
description:
  Putative signal transduction protein with CBS domains; KEGG: bra:BRADO5312 hypothetical protein; PFAM: CBS domain containing protein; transport-associated; SMART: CBS domain containing protein.


ensembl_gene_id: Rpdx1_4466
symbol: ADU46017.1
gene_biotype: protein_coding
description:
  PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-3 domain protein; histidine kinase A domain protein; KEGG: oca:OCAR_7132 sensor protein FixL; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein.


ensembl_gene_id: Rpdx1_4467
symbol: ADU46018.1
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; KEGG: bra:BRADO2434 response regulator FixJ; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR.


ensembl_gene_id: Rpdx1_4468
symbol: ADU46019.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll2758 two-component response regulator; PFAM: response regulator receiver; SMART: response regulator receiver.


ensembl_gene_id: Rpdx1_4469
symbol: ADU46020.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family; KEGG: bja:bll2757 transcriptional regulator FixK; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; cyclic nucleotide-binding.


ensembl_gene_id: Rpdx1_4470
symbol: ADU46021.1
gene_biotype: protein_coding
description:
  TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: avi:Avi_5163 O-acetylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein.


ensembl_gene_id: Rpdx1_4471
symbol: nuoN-2
gene_biotype: protein_coding
description:
  NADH/Ubiquinone/plastoquinone (complex I); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family.


ensembl_gene_id: Rpdx1_4472
symbol: ADU46023.1
gene_biotype: protein_coding
description:
  KEGG: rsq:Rsph17025_1700 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I).


ensembl_gene_id: Rpdx1_4473
symbol: ADU46024.1
gene_biotype: protein_coding
description:
  KEGG: rsq:Rsph17025_1699 proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein.


ensembl_gene_id: Rpdx1_4478
symbol: ADU46029.1
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, chain G; KEGG: rsq:Rsph17025_1694 NADH dehydrogenase subunit G; TIGRFAM: NADH-quinone oxidoreductase, chain G; PFAM: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase; Belongs to the complex I 75 kDa subunit family.


ensembl_gene_id: Rpdx1_4479
symbol: ADU46030.1
gene_biotype: protein_coding
description:
  KEGG: rsh:Rsph17029_1740 NADH dehydrogenase (quinone); PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding.


ensembl_gene_id: Rpdx1_4480
symbol: ADU46031.1
gene_biotype: protein_coding
description:
  PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: rsq:Rsph17025_1692 NADH dehydrogenase subunit E.


ensembl_gene_id: Rpdx1_4481
symbol: nuoC-2
gene_biotype: protein_coding
description:
  NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family.


ensembl_gene_id: Rpdx1_4484
symbol: ndvA
gene_biotype: protein_coding
description:
  ABC transporter related protein; Involved in Beta-(1-->2)glucan export. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.


ensembl_gene_id: Rpdx1_4485
symbol: ADU46036.1
gene_biotype: protein_coding
description:
  Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: bja:bll1320 penicillin-binding protein; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Belongs to the peptidase S11 family.


ensembl_gene_id: Rpdx1_4487
symbol: ADU46038.1
gene_biotype: protein_coding
description:
  Redoxin domain protein; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.


ensembl_gene_id: Rpdx1_4489
symbol: thrB
gene_biotype: protein_coding
description:
  TIGRFAM: homoserine kinase; KEGG: bja:blr1315 homoserine kinase; PFAM: aminoglycoside phosphotransferase; Belongs to the pseudomonas-type ThrB family.


ensembl_gene_id: Rpdx1_4498
symbol: ADU46049.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: msl:Msil_3204 transcriptional regulator, LysR family.


ensembl_gene_id: Rpdx1_4499
symbol: ADU46050.1
gene_biotype: protein_coding
description:
  PFAM: YceI family protein; KEGG: mrd:Mrad2831_5253 YceI family protein; Belongs to the UPF0312 family.


ensembl_gene_id: Rpdx1_4505
symbol: ADU46055.1
gene_biotype: protein_coding
description:
  PFAM: Phosphate-starvation-inducible E-like; KEGG: apb:SAR116_0955 phosphate-starvation-inducible E; Belongs to the PsiE family.


ensembl_gene_id: Rpdx1_4510
symbol: purA
gene_biotype: protein_coding
description:
  Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.


ensembl_gene_id: Rpdx1_4513
symbol: ADU46063.1
gene_biotype: protein_coding
description:
  ybaK/ebsC protein; KEGG: nha:Nham_1120 hypothetical protein; TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.


ensembl_gene_id: Rpdx1_4517
symbol: ADU46067.1
gene_biotype: protein_coding
description:
  PFAM: histidine kinase HAMP region domain protein; KEGG: nha:Nham_1080 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: Rpdx1_4518
symbol: ADU46068.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr2932 hypothetical protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.


ensembl_gene_id: Rpdx1_4519
symbol: ADU46069.1
gene_biotype: protein_coding
description:
  PFAM: Rubrerythrin; protein of unknown function DUF125 transmembrane; KEGG: bbt:BBta_7128 hypothetical protein.


ensembl_gene_id: Rpdx1_4522
symbol: ADU46072.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO5943 putative methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Cache type 2 domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.


ensembl_gene_id: Rpdx1_4523
symbol: ADU46073.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll7062 putative methyl accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Cache type 2 domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.


ensembl_gene_id: Rpdx1_4524
symbol: ADU46074.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_1119 D-3-phosphoglycerate dehydrogenase; TIGRFAM: D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; amino acid-binding ACT domain protein.


ensembl_gene_id: Rpdx1_4525
symbol: ADU46075.1
gene_biotype: protein_coding
description:
  Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.


ensembl_gene_id: Rpdx1_4526
symbol: ADU46076.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr2976 putative methyl accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.


ensembl_gene_id: Rpdx1_4527
symbol: ADU46077.1
gene_biotype: protein_coding
description:
  PAS sensor protein; KEGG: bja:blr2975 hypothetical protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold domain protein.


ensembl_gene_id: Rpdx1_4531
symbol: ADU46081.1
gene_biotype: protein_coding
description:
  Porin; PFAM: porin; KEGG: bra:BRADO5955 putative outer surface protein (OmpA-like); putative heat-resistant agglutinin 1.


ensembl_gene_id: Rpdx1_4533
symbol: glmM
gene_biotype: protein_coding
description:
  Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.


ensembl_gene_id: Rpdx1_4538
symbol: aroE
gene_biotype: protein_coding
description:
  Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).


ensembl_gene_id: Rpdx1_4539
symbol: ADU46089.1
gene_biotype: protein_coding
description:
  PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; KEGG: nha:Nham_1108 sulphate transporter.


ensembl_gene_id: Rpdx1_4541
symbol: ADU46091.1
gene_biotype: protein_coding
description:
  Small GTP-binding protein; KEGG: bra:BRADO5970 elongation factor G; TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain IV; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain protein.


ensembl_gene_id: Rpdx1_4545
symbol: ADU46095.1
gene_biotype: protein_coding
description:
  PFAM: Glutathione S-transferase domain; KEGG: bra:BRADO5975 putative glutathione S-transferase (GST); putative maleylacetoacetate isomerase; Belongs to the GST superfamily.


ensembl_gene_id: Rpdx1_4548
symbol: ADU46098.1
gene_biotype: protein_coding
description:
  KEGG: oca:OCAR_7178 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase.


ensembl_gene_id: Rpdx1_4552
symbol: ADU46102.1
gene_biotype: protein_coding
description:
  HAD-superfamily hydrolase, subfamily IA, variant 3; KEGG: bbt:BBta_1791 putative haloacid dehalogenase/epoxide hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase.


ensembl_gene_id: Rpdx1_4555
symbol: ADU46105.1
gene_biotype: protein_coding
description:
  PFAM: Glutathione S-transferase domain; KEGG: bra:BRADO5989 putative glutathione S-transferase (GST).


ensembl_gene_id: Rpdx1_4558
symbol: uvrB
gene_biotype: protein_coding
description:
  Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]


ensembl_gene_id: Rpdx1_4559
symbol: ADU46109.1
gene_biotype: protein_coding
description:
  PFAM: MT-A70 family protein; KEGG: mca:MCA0246 adenine-specific DNA methyltransferase; Belongs to the MT-A70-like family.


ensembl_gene_id: Rpdx1_4564
symbol: ADU46114.1
gene_biotype: protein_coding
description:
  TIGRFAM: acetyl-CoA acetyltransferase; KEGG: swi:Swit_1771 acetyl-CoA acetyltransferase; PFAM: Thiolase-like; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Rpdx1_4572
symbol: ychF
gene_biotype: protein_coding
description:
  GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.


ensembl_gene_id: Rpdx1_4573
symbol: pth
gene_biotype: protein_coding
description:
  peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.


ensembl_gene_id: Rpdx1_4574
symbol: rplY
gene_biotype: protein_coding
description:
  Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.


ensembl_gene_id: Rpdx1_4576
symbol: lgt
gene_biotype: protein_coding
description:
  Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.


ensembl_gene_id: Rpdx1_4578
symbol: ADU46128.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF152; KEGG: bra:BRADO6002 hypothetical protein; Belongs to the multicopper oxidase YfiH/RL5 family.


ensembl_gene_id: Rpdx1_4580
symbol: prs
gene_biotype: protein_coding
description:
  Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.


ensembl_gene_id: Rpdx1_4581
symbol: ribH-2
gene_biotype: protein_coding
description:
  67-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.


ensembl_gene_id: Rpdx1_4583
symbol: proC
gene_biotype: protein_coding
description:
  Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.


ensembl_gene_id: Rpdx1_4584
symbol: ADU46134.1
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; KEGG: bja:blr7462 two-component hybrid sensor and regulator; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.


ensembl_gene_id: Rpdx1_4585
symbol: ADU46135.1
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; KEGG: nha:Nham_3137 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.


ensembl_gene_id: Rpdx1_4586
symbol: ADU46136.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_1738 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.


ensembl_gene_id: Rpdx1_4587
symbol: ADU46137.1
gene_biotype: protein_coding
description:
  TIGRFAM: branched-chain amino acid aminotransferase; KEGG: nha:Nham_3139 branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV.


ensembl_gene_id: Rpdx1_4588
symbol: mutL
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.


ensembl_gene_id: Rpdx1_4589
symbol: ADU46139.1
gene_biotype: protein_coding
description:
  PFAM: Class I peptide chain release factor; KEGG: bja:blr7486 peptidyl-tRNA hydrolase domain protein.


ensembl_gene_id: Rpdx1_4590
symbol: ADU46140.1
gene_biotype: protein_coding
description:
  PFAM: Chromogranin/secretogranin; peptidase M16 domain protein; KEGG: bra:BRADO6071 putative Zn-dependent protease.


ensembl_gene_id: Rpdx1_4591
symbol: ADU46141.1
gene_biotype: protein_coding
description:
  PFAM: peptidase M16 domain protein; KEGG: bja:blr7484 zinc protease; Belongs to the peptidase M16 family.


ensembl_gene_id: Rpdx1_4593
symbol: lspA
gene_biotype: protein_coding
description:
  Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.


ensembl_gene_id: Rpdx1_4594
symbol: ileS
gene_biotype: protein_coding
description:
  isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile).


ensembl_gene_id: Rpdx1_4597
symbol: ADU46146.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr7480 riboflavin biosynthesis bifunctional protein; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; Belongs to the ribF family.


ensembl_gene_id: Rpdx1_4603
symbol: ADU46152.1
gene_biotype: protein_coding
description:
  PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nha:Nham_3257 TonB-dependent receptor, plug.


ensembl_gene_id: Rpdx1_4611
symbol: ADU46160.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_1096 XRE family transcriptional regulator; PFAM: Protein of unknown function DUF2083,transcriptional regulator; protein of unknown function DUF955; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.


ensembl_gene_id: Rpdx1_4613
symbol: ADU46162.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_1092 lytic murein transglycosylase; TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein.


ensembl_gene_id: Rpdx1_4614
symbol: ADU46163.1
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: bra:BRADO0500 putative branched-chain amino-acid ABC transporter, periplasmic binding protein.


ensembl_gene_id: Rpdx1_4615
symbol: ADU46164.1
gene_biotype: protein_coding
description:
  ABC transporter related protein; KEGG: bbt:BBta_7683 putative branched-chain amino acid ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_4617
symbol: ADU46165.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll0885 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_4619
symbol: ADU46167.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: bbt:BBta_7685 putative branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Rpdx1_4620
symbol: ADU46168.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: bbt:BBta_7686 putative branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Rpdx1_4622
symbol: ADU46170.1
gene_biotype: protein_coding
description:
  PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bbt:BBta_2240 N-ethylmaleimide reductase, FMN-linked.


ensembl_gene_id: Rpdx1_4625
symbol: ADU46172.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr2440 ABC transporter permease protein.


ensembl_gene_id: Rpdx1_4626
symbol: ADU46173.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_2224 putative ABC transporter permease protein.


ensembl_gene_id: Rpdx1_4627
symbol: ADU46174.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO1910 putative ATP-binding protein of sugar ABC transporter; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_4628
symbol: ADU46175.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr2437 ABC transporter ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Rpdx1_4629
symbol: ADU46176.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO1908 glycerol-3-phosphate dehydrogenase; PFAM: FAD dependent oxidoreductase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: Rpdx1_4630
symbol: ADU46177.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, DeoR family; KEGG: bja:blr2433 transcriptional regulatory protein; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR.


ensembl_gene_id: Rpdx1_4633
symbol: ADU46180.1
gene_biotype: protein_coding
description:
  PFAM: acriflavin resistance protein; KEGG: bja:blr2423 cation efflux system protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: Rpdx1_4634
symbol: ADU46181.1
gene_biotype: protein_coding
description:
  Efflux transporter, RND family, MFP subunit; KEGG: bbt:BBta_2214 putative component of multidrug efflux system; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Rpdx1_4635
symbol: ADU46182.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_4427 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; response regulator receiver; Hpt domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein.


ensembl_gene_id: Rpdx1_4637
symbol: ADU46184.1
gene_biotype: protein_coding
description:
  TIGRFAM: gamma-glutamyltransferase; KEGG: bra:BRADO1881 putative gamma-glutamyltranspeptidase; PFAM: gamma-glutamyltranspeptidase.


ensembl_gene_id: Rpdx1_4640
symbol: ADU46187.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family; KEGG: bja:bll2244 cAMP-regulatory protein; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding.


ensembl_gene_id: Rpdx1_4643
symbol: ADU46190.1
gene_biotype: protein_coding
description:
  Ureidoglycolate lyase; KEGG: bja:blr7891 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; PFAM: fumarylacetoacetate (FAA) hydrolase.


ensembl_gene_id: Rpdx1_4645
symbol: ADU46192.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_0663 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding.


ensembl_gene_id: Rpdx1_4651
symbol: clpB
gene_biotype: protein_coding
description:
  ATP-dependent chaperone ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.


ensembl_gene_id: Rpdx1_4652
symbol: ADU46199.1
gene_biotype: protein_coding
description:
  PFAM: MOSC domain containing protein; MOSC domain protein beta barrel domain protein; KEGG: nha:Nham_0680 hypothetical protein.


ensembl_gene_id: Rpdx1_4654
symbol: ADU46201.1
gene_biotype: protein_coding
description:
  KEGG: nwi:Nwi_0586 methionine biosynthesis MetW; TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW protein.


ensembl_gene_id: Rpdx1_4655
symbol: metXA
gene_biotype: protein_coding
description:
  Homoserine O-acetyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine.


ensembl_gene_id: Rpdx1_4657
symbol: hisC
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_1183 histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.


ensembl_gene_id: Rpdx1_4659
symbol: ADU46206.1
gene_biotype: protein_coding
description:
  PFAM: Mg2 transporter protein CorA family protein; KEGG: nha:Nham_0762 Mg2+ transporter protein, CorA-like.


ensembl_gene_id: Rpdx1_4667
symbol: ADU46214.1
gene_biotype: protein_coding
description:
  KEGG: azl:AZL_d04490 RNA polymerase sigma-70 factor, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2.


ensembl_gene_id: Rpdx1_4669
symbol: ADU46216.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO2557 putative methyl-accepting chemotaxis receptor/sensory transducer; PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.


ensembl_gene_id: Rpdx1_4674
symbol: ADU46221.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO1138 antifreeze protein, type I: 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.


ensembl_gene_id: Rpdx1_4678
symbol: ADU46225.1
gene_biotype: protein_coding
description:
  Rhodanese domain protein; KEGG: bbt:BBta_6071 putative rhodanese-related sulfurtransferase; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein.


ensembl_gene_id: Rpdx1_4681
symbol: ADU46228.1
gene_biotype: protein_coding
description:
  KEGG: slt:Slit_1971 heavy metal efflux pump, CzcA family; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: Rpdx1_4682
symbol: ADU46229.1
gene_biotype: protein_coding
description:
  TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: rcu:RCOM_0389620 Cobalt-zinc-cadmium resistance protein czcB, putative; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Rpdx1_4683
symbol: ADU46230.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr2976 putative methyl accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer.


ensembl_gene_id: Rpdx1_4684
symbol: ADU46231.1
gene_biotype: protein_coding
description:
  TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; KEGG: azl:AZL_007490 chemotaxis sensory transducer; SMART: PAS domain containing protein.


ensembl_gene_id: Rpdx1_4686
symbol: ADU46233.1
gene_biotype: protein_coding
description:
  PAS sensor protein; KEGG: azl:AZL_007490 chemotaxis sensory transducer; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein.


ensembl_gene_id: Rpdx1_4690
symbol: ADU46237.1
gene_biotype: protein_coding
description:
  KEGG: xau:Xaut_0814 helix-turn-helix domain-containing protein; PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; SMART: helix-turn-helix domain protein.


ensembl_gene_id: Rpdx1_4692
symbol: smc
gene_biotype: protein_coding
description:
  Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.


ensembl_gene_id: Rpdx1_4695
symbol: htpX-2
gene_biotype: protein_coding
description:
  PFAM: peptidase M48 Ste24p; KEGG: bbt:BBta_2314 putative protease HtpX; Belongs to the peptidase M48B family.


ensembl_gene_id: Rpdx1_4698
symbol: apt
gene_biotype: protein_coding
description:
  Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.


ensembl_gene_id: Rpdx1_4699
symbol: ADU46246.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_2309 anthranilate synthase; TIGRFAM: anthranilate synthase; glutamine amidotransferase of anthranilate synthase; PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein; glutamine amidotransferase class-I.


ensembl_gene_id: Rpdx1_4706
symbol: ADU46253.1
gene_biotype: protein_coding
description:
  PFAM: OmpW family protein; KEGG: bbt:BBta_0946 putative outer membrane protein precursor of unknown function.


ensembl_gene_id: Rpdx1_4709
symbol: ADU46256.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_0942 hypothetical protein; PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide repeat.


ensembl_gene_id: Rpdx1_4713
symbol: ADU46260.1
gene_biotype: protein_coding
description:
  TRAP transporter, 4TM/12TM fusion protein; KEGG: bra:BRADO6597 C4-dicarboxylate transporter; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit.


ensembl_gene_id: Rpdx1_4714
symbol: ADU46261.1
gene_biotype: protein_coding
description:
  TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: bja:blr1301 immunogenic protein precursor.


ensembl_gene_id: Rpdx1_4715
symbol: ADU46262.1
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: azl:AZL_009150 major facilitator superfamily MFS-1.


ensembl_gene_id: Rpdx1_4716
symbol: ADU46263.1
gene_biotype: protein_coding
description:
  Response regulator receiver; KEGG: rsq:Rsph17025_3337 hypothetical protein; PFAM: response regulator receiver; SMART: response regulator receiver.


ensembl_gene_id: Rpdx1_4717
symbol: ADU46264.1
gene_biotype: protein_coding
description:
  PFAM: PAS fold-4 domain protein; HWE histidine kinase; KEGG: rsp:RSP_1628 sensor histidine protein kinase.


ensembl_gene_id: Rpdx1_4720
symbol: ADU46267.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr0402 two-component response regulator; PFAM: EAL domain protein; response regulator receiver; SMART: EAL domain protein.


ensembl_gene_id: Rpdx1_4726
symbol: ADU46273.1
gene_biotype: protein_coding
description:
  KEGG: mrd:Mrad2831_3556 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase.


ensembl_gene_id: Rpdx1_4727
symbol: ADU46274.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_3939 putative two-component response regulatory protein, response regulator receiver; PFAM: response regulator receiver; SMART: response regulator receiver.


ensembl_gene_id: Rpdx1_4728
symbol: ADU46275.1
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; KEGG: bbt:BBta_6050 putative sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein.


ensembl_gene_id: Rpdx1_4729
symbol: yacG
gene_biotype: protein_coding
description:
  Protein of unknown function DUF329; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase.


ensembl_gene_id: Rpdx1_4730
symbol: ADU46277.1
gene_biotype: protein_coding
description:
  Maf protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.


ensembl_gene_id: Rpdx1_4732
symbol: ADU46279.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO6635 putative arsenate reductase (ArsC-like); PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight.


ensembl_gene_id: Rpdx1_4733
symbol: ADU46280.1
gene_biotype: protein_coding
description:
  PFAM: conserved hypothetical protein; KEGG: nwi:Nwi_0248 hypothetical protein; Belongs to the UPF0262 family.


ensembl_gene_id: Rpdx1_4734
symbol: hisD
gene_biotype: protein_coding
description:
  Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.


ensembl_gene_id: Rpdx1_4736
symbol: murA
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.


ensembl_gene_id: Rpdx1_4742
symbol: ADU46289.1
gene_biotype: protein_coding
description:
  Citryl-CoA lyase; KEGG: bja:blr6797 putative citrate lyase; PFAM: HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.


ensembl_gene_id: Rpdx1_4743
symbol: guaC
gene_biotype: protein_coding
description:
  IMP dehydrogenase/GMP reductase; Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides.


ensembl_gene_id: Rpdx1_4744
symbol: ADU46291.1
gene_biotype: protein_coding
description:
  2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.


ensembl_gene_id: Rpdx1_4745
symbol: ADU46292.1
gene_biotype: protein_coding
description:
  Nuclease (SNase domain protein); KEGG: bra:BRADO2399 putative signal peptide; PFAM: nuclease (SNase domain protein); SMART: nuclease (SNase domain protein).


ensembl_gene_id: Rpdx1_4747
symbol: ADU46294.1
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bra:BRADO2426 putative diguanylate cyclase (GGDEF); SMART: GGDEF domain containing protein.


ensembl_gene_id: Rpdx1_4748
symbol: ackA
gene_biotype: protein_coding
description:
  Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.


ensembl_gene_id: Rpdx1_4749
symbol: ADU46296.1
gene_biotype: protein_coding
description:
  Phosphate acetyltransferase; KEGG: cak:Caul_1955 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; MaoC domain protein dehydratase.


ensembl_gene_id: Rpdx1_4750
symbol: ADU46297.1
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bte:BTH_II1698 enoyl-(acyl carrier protein) reductase.


ensembl_gene_id: Rpdx1_4754
symbol: ADU46301.1
gene_biotype: protein_coding
description:
  KEGG: ppd:Ppro_3271 alpha,alpha-trehalose-phosphate synthase (UDP-forming); PFAM: glycosyl transferase family 20.


ensembl_gene_id: Rpdx1_4755
symbol: ADU46302.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function DUF2254, membrane; KEGG: mch:Mchl_3348 formate C-acetyltransferase glycine radical.


ensembl_gene_id: Rpdx1_4756
symbol: ADU46303.1
gene_biotype: protein_coding
description:
  TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: bja:blr2591 serine protease DO-like protease; SMART: PDZ/DHR/GLGF domain protein; Belongs to the peptidase S1C family.


ensembl_gene_id: Rpdx1_4759
symbol: ADU46306.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr6155 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_4760
symbol: ADU46307.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: bra:BRADO1746 ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Rpdx1_4761
symbol: ADU46308.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: bbt:BBta_2058 ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Rpdx1_4762
symbol: ADU46309.1
gene_biotype: protein_coding
description:
  PFAM: basic membrane lipoprotein; KEGG: bbt:BBta_2057 putative ABC transporter (substrate-binding protein).


ensembl_gene_id: Rpdx1_4766
symbol: ADU46312.1
gene_biotype: protein_coding
description:
  KEGG: bid:Bind_1866 UDP-glucose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.


ensembl_gene_id: Rpdx1_4767
symbol: ADU46313.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr7577 UDP-hexose transferase; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; Belongs to the glycosyltransferase 26 family.


ensembl_gene_id: Rpdx1_4768
symbol: ADU46314.1
gene_biotype: protein_coding
description:
  PFAM: glycoside hydrolase family 5; KEGG: bja:blr3367 cellulase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.


ensembl_gene_id: Rpdx1_4774
symbol: ADU46320.1
gene_biotype: protein_coding
description:
  Polysaccharide biosynthesis protein; KEGG: bja:bll3363 hypothetical protein; manually curated; PFAM: polysaccharide biosynthesis protein.


ensembl_gene_id: Rpdx1_4775
symbol: metAS
gene_biotype: protein_coding
description:
  Homoserine O-succinyltransferase; Transfers a succinyl group from succinyl-CoA to L-homoserine, forming succinyl-L-homoserine; Belongs to the MetA family.


ensembl_gene_id: Rpdx1_4777
symbol: ADU46322.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF861 cupin_3; KEGG: bra:BRADO0883 putative RmlC-like cupin family protein.


ensembl_gene_id: Rpdx1_4780
symbol: ADU46325.1
gene_biotype: protein_coding
description:
  Electron-transferring-flavoprotein dehydrogenase; Part of an electron transfer system. Belongs to the ETF-QO/FixC family.


ensembl_gene_id: Rpdx1_4781
symbol: ADU46326.1
gene_biotype: protein_coding
description:
  PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; KEGG: bra:BRADO5385 protein FixB; electron transfer flavoprotein alpha chain.


ensembl_gene_id: Rpdx1_4784
symbol: nifW
gene_biotype: protein_coding
description:
  Nitrogen fixation protein NifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.


ensembl_gene_id: Rpdx1_4785
symbol: ADU46330.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO5390 homocitrate synthase; TIGRFAM: homocitrate synthase; PFAM: pyruvate carboxyltransferase; Belongs to the alpha-IPM synthase/homocitrate synthase family.


ensembl_gene_id: Rpdx1_4786
symbol: ADU46331.1
gene_biotype: protein_coding
description:
  Cysteine desulfurase NifS; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.


ensembl_gene_id: Rpdx1_4787
symbol: ADU46332.1
gene_biotype: protein_coding
description:
  Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.


ensembl_gene_id: Rpdx1_4788
symbol: ADU46333.1
gene_biotype: protein_coding
description:
  KEGG: mlo:mll5942 hypothetical protein; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; Belongs to the HesB/IscA family.


ensembl_gene_id: Rpdx1_4792
symbol: ADU46337.1
gene_biotype: protein_coding
description:
  KEGG: bid:Bind_0479 nitrogen fixation protein; TIGRFAM: nitrogen fixation protein; PFAM: protein of unknown function DUF269.


ensembl_gene_id: Rpdx1_4793
symbol: ADU46338.1
gene_biotype: protein_coding
description:
  KEGG: azc:AZC_1036 nitrogenase molybdenum-iron NifX protein; TIGRFAM: nitrogen fixation protein NifX; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein.


ensembl_gene_id: Rpdx1_4794
symbol: ADU46339.1
gene_biotype: protein_coding
description:
  TIGRFAM: nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; KEGG: mca:MCA0234 nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; PFAM: oxidoreductase/nitrogenase component 1; Belongs to the NifD/NifK/NifE/NifN family.


ensembl_gene_id: Rpdx1_4795
symbol: ADU46340.1
gene_biotype: protein_coding
description:
  KEGG: mca:MCA0233 nitrogenase iron-molybdenum cofactor biosynthesis protein NifE; TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase component 1; Belongs to the NifD/NifK/NifE/NifN family.


ensembl_gene_id: Rpdx1_4796
symbol: ADU46341.1
gene_biotype: protein_coding
description:
  Nitrogenase molybdenum-iron protein beta chain; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family.


ensembl_gene_id: Rpdx1_4797
symbol: ADU46342.1
gene_biotype: protein_coding
description:
  TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; KEGG: msl:Msil_3631 nitrogenase molybdenum-iron protein alpha chain; PFAM: oxidoreductase/nitrogenase component 1.


ensembl_gene_id: Rpdx1_4801
symbol: ADU46346.1
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_B1454 nitrogen fixation protein; TIGRFAM: nitrogen fixation protein FixT; PFAM: NifT/FixU family protein.


ensembl_gene_id: Rpdx1_4806
symbol: ADU46351.1
gene_biotype: protein_coding
description:
  KEGG: mca:MCA0206 HesB/YadR/YfhF family protein; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; Belongs to the HesB/IscA family.


ensembl_gene_id: Rpdx1_4808
symbol: ADU46353.1
gene_biotype: protein_coding
description:
  KEGG: azc:AZC_3414 nitrogenase cofactor biosynthesis protein; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; Radical SAM domain protein.


ensembl_gene_id: Rpdx1_4810
symbol: ADU46355.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, NifA subfamily, Fis Family; TIGRFAM: Nif-specific regulatory protein; PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; helix-turn-helix Fis-type; KEGG: bbt:BBta_5933 NifA subfamily transcriptional regulator; SMART: GAF domain protein; AAA ATPase.


ensembl_gene_id: Rpdx1_4813
symbol: ADU46358.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr6523 putative iron transport protein; TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: Ferrous iron transport protein B domain protein; GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport B domain protein.


ensembl_gene_id: Rpdx1_4816
symbol: ADU46361.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_2902 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.


ensembl_gene_id: Rpdx1_4819
symbol: cbbM
gene_biotype: protein_coding
description:
  Ribulose-bisphosphate carboxylase; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type II subfamily.


ensembl_gene_id: Rpdx1_4820
symbol: ADU46364.1
gene_biotype: protein_coding
description:
  Fructose-bisphosphate aldolase, class II, Calvin cycle subtype; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis.


ensembl_gene_id: Rpdx1_4823
symbol: fbp
gene_biotype: protein_coding
description:
  PFAM: Inositol phosphatase/fructose-16-bisphosphatase; KEGG: nha:Nham_3754 fructose-1,6-bisphosphatase; Belongs to the FBPase class 1 family.


ensembl_gene_id: Rpdx1_4826
symbol: flgK
gene_biotype: protein_coding
description:
  KEGG: bja:blr3703 flagellar hook-associated protein; TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein.


ensembl_gene_id: Rpdx1_4829
symbol: ADU46372.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr3700 flagellar hook protein FlgE; TIGRFAM: fagellar hook-basal body protein; PFAM: flagellar basal body FlaE domain protein; flagellar basal body rod protein; protein of unknown function DUF1078 domain protein.


ensembl_gene_id: Rpdx1_4833
symbol: ADU46376.1
gene_biotype: protein_coding
description:
  Flagellar hook-associated 2 domain protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.


ensembl_gene_id: Rpdx1_4834
symbol: ADU46377.1
gene_biotype: protein_coding
description:
  Flagellin domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.


ensembl_gene_id: Rpdx1_4835
symbol: ADU46378.1
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: bra:BRADO4891 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Rpdx1_4837
symbol: ADU46380.1
gene_biotype: protein_coding
description:
  Alpha,alpha-trehalose-phosphate synthase (UDP-forming); Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-alpha-D- glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose- 6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor; Belongs to the glycosyltransferase 20 family.


ensembl_gene_id: Rpdx1_4840
symbol: ADU46383.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll0327 putative methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.


ensembl_gene_id: Rpdx1_4842
symbol: ADU46384.1
gene_biotype: protein_coding
description:
  PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: bra:BRADO6957 putative carbon-monoxide dehydrogenase small subunit, CoxS-like protein.


ensembl_gene_id: Rpdx1_4843
symbol: ADU46385.1
gene_biotype: protein_coding
description:
  PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: bra:BRADO6958 putative carbon-monoxide dehydrogenase large subunit, CoxL-like protein.


ensembl_gene_id: Rpdx1_4844
symbol: ADU46386.1
gene_biotype: protein_coding
description:
  Carbon-monoxide dehydrogenase (acceptor); KEGG: bbt:BBta_0572 putative carbon monoxide dehydrogenase medium subunit, CoxM-like protein; PFAM: molybdopterin dehydrogenase FAD-binding.


ensembl_gene_id: Rpdx1_4845
symbol: ADU46387.1
gene_biotype: protein_coding
description:
  PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bja:blr0338 alpha-methylacyl-CoA racemase; Belongs to the CoA-transferase III family.


ensembl_gene_id: Rpdx1_4846
symbol: ADU46388.1
gene_biotype: protein_coding
description:
  TIGRFAM: fumarylacetoacetase; KEGG: bbt:BBta_0567 fumarylacetoacetate hydrolase; PFAM: Domain of unknown function DUF1969; fumarylacetoacetate (FAA) hydrolase.


ensembl_gene_id: Rpdx1_4848
symbol: ADU46389.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_0920 maleylacetoacetate isomerase; TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain.


ensembl_gene_id: Rpdx1_4849
symbol: hmgA
gene_biotype: protein_coding
description:
  Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.


ensembl_gene_id: Rpdx1_4853
symbol: ADU46394.1
gene_biotype: protein_coding
description:
  Regulatory protein MarR; KEGG: bra:BRADO6970 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.


ensembl_gene_id: Rpdx1_4854
symbol: ADU46395.1
gene_biotype: protein_coding
description:
  KEGG: nwi:Nwi_3029 peptidase C14; PFAM: peptidase C14 caspase catalytic subunit p20; TPR repeat-containing protein; SMART: Tetratricopeptide repeat.


ensembl_gene_id: Rpdx1_4857
symbol: ADU46398.1
gene_biotype: protein_coding
description:
  PFAM: acriflavin resistance protein; KEGG: nha:Nham_3610 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: Rpdx1_4859
symbol: ADU46400.1
gene_biotype: protein_coding
description:
  TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: bbt:BBta_0549 hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Rpdx1_4861
symbol: lysS
gene_biotype: protein_coding
description:
  TIGRFAM: lysyl-tRNA synthetase; KEGG: nwi:Nwi_0151 lysyl-tRNA synthetase; PFAM: Lysyl-tRNA synthetase, class Ic; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: Rpdx1_4862
symbol: ADU46403.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_0202 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor.


ensembl_gene_id: Rpdx1_4864
symbol: ADU46405.1
gene_biotype: protein_coding
description:
  PFAM: electron transport protein SCO1/SenC; KEGG: bbt:BBta_0787 putative electron transport protein.


ensembl_gene_id: Rpdx1_4866
symbol: ADU46407.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_1388 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.


ensembl_gene_id: Rpdx1_4868
symbol: ADU46409.1
gene_biotype: protein_coding
description:
  PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bpa:BPP0371 NADH:flavin oxidoreductase / NADH oxidase family protein.


ensembl_gene_id: Rpdx1_4870
symbol: ADU46411.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bra:BRADO2335 protochatechuate degradation transcriptional regulator.


ensembl_gene_id: Rpdx1_4873
symbol: ADU46414.1
gene_biotype: protein_coding
description:
  KEGG: mag:amb0252 hypothetical protein; TIGRFAM: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; PFAM: Dimethylmenaquinone methyltransferase.


ensembl_gene_id: Rpdx1_4874
symbol: ADU46415.1
gene_biotype: protein_coding
description:
  PFAM: Phosphogluconate dehydrogenase, NAD-binding, putative-like; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bra:BRADO2339 dehydrogenase.


ensembl_gene_id: Rpdx1_4876
symbol: ADU46417.1
gene_biotype: protein_coding
description:
  TIGRFAM: protocatechuate 4,5-dioxygenase, alpha subunit; KEGG: bbt:BBta_2701 protocatechuate 4,5-dioxygenase subunit alpha; PFAM: Extradiol ring-cleavage dioxygenase LigAB LigA subunit.


ensembl_gene_id: Rpdx1_4877
symbol: ADU46418.1
gene_biotype: protein_coding
description:
  PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: bra:BRADO2342 protocatechuate 4,5-dioxygenase subunit beta.


ensembl_gene_id: Rpdx1_4878
symbol: ADU46419.1
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase domain protein; KEGG: bra:BRADO2343 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase.


ensembl_gene_id: Rpdx1_4880
symbol: hisE-2
gene_biotype: protein_coding
description:
  KEGG: bja:blr1323 phosphoribosyl-ATP pyrophosphohydrolase; TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase-like.


ensembl_gene_id: Rpdx1_4890
symbol: modC
gene_biotype: protein_coding
description:
  Molybdate ABC transporter, ATPase subunit; Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Molybdate importer (TC 3.A.1.8) family.


ensembl_gene_id: Rpdx1_4892
symbol: ADU46433.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr6951 molybdenum ABC transporter molybdate-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1.


ensembl_gene_id: Rpdx1_4893
symbol: ADU46434.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_2953 ModE family transcriptional regulator; TIGRFAM: molybdate transport repressor, ModE; PFAM: regulatory protein LysR; TOBE domain protein.


ensembl_gene_id: Rpdx1_4896
symbol: ADU46437.1
gene_biotype: protein_coding
description:
  PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: rfr:Rfer_3209 pyruvate flavodoxin/ferredoxin oxidoreductase-like.


ensembl_gene_id: Rpdx1_4897
symbol: ADU46438.1
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; oxidoreductase FAD/NAD(P)-binding domain protein; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; KEGG: rfr:Rfer_3208 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase.


ensembl_gene_id: Rpdx1_4899
symbol: polA
gene_biotype: protein_coding
description:
  DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.


ensembl_gene_id: Rpdx1_4900
symbol: pyrE
gene_biotype: protein_coding
description:
  Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).


ensembl_gene_id: Rpdx1_4903
symbol: ADU46444.1
gene_biotype: protein_coding
description:
  Glycogen/starch/alpha-glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.


ensembl_gene_id: Rpdx1_4905
symbol: ADU46446.1
gene_biotype: protein_coding
description:
  Arginase; KEGG: nwi:Nwi_0352 arginase; TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; Belongs to the arginase family.


ensembl_gene_id: Rpdx1_4906
symbol: ADU46447.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO3397 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_4908
symbol: ADU46449.1
gene_biotype: protein_coding
description:
  ChaC family protein; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.


ensembl_gene_id: Rpdx1_4909
symbol: ADU46450.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr1393 1-acylglycerol-3-phosphate O-acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase.


ensembl_gene_id: Rpdx1_4912
symbol: ftsE
gene_biotype: protein_coding
description:
  Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.


ensembl_gene_id: Rpdx1_4914
symbol: ADU46455.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll1388 two-component response regulator; PFAM: response regulator receiver; SMART: response regulator receiver.


ensembl_gene_id: Rpdx1_4916
symbol: ADU46457.1
gene_biotype: protein_coding
description:
  PFAM: Carboxymuconolactone decarboxylase; KEGG: bja:bll1385 putative gamma carboxymuconolactone decarboxylase protein.


ensembl_gene_id: Rpdx1_4917
symbol: lysA
gene_biotype: protein_coding
description:
  Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.


ensembl_gene_id: Rpdx1_4920
symbol: ADU46461.1
gene_biotype: protein_coding
description:
  PFAM: Redoxin domain protein; KEGG: bra:BRADO6488 thiol:disulfide interchange protein TlpA (cytochrome c biogenesis protein TlpA).


ensembl_gene_id: Rpdx1_4921
symbol: ADU46462.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1428; KEGG: oca:OCAR_4758 RNA signal recognition particle 4.5S RNA.


ensembl_gene_id: Rpdx1_4924
symbol: ADU46465.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mlo:mlr7815 transcriptional regulator.


ensembl_gene_id: Rpdx1_4925
symbol: ADU46466.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_3479 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein.


ensembl_gene_id: Rpdx1_4926
symbol: ADU46467.1
gene_biotype: protein_coding
description:
  PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; KEGG: bja:blr1378 electron transfer flavoprotein large subunit.


ensembl_gene_id: Rpdx1_4927
symbol: ADU46468.1
gene_biotype: protein_coding
description:
  PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: bja:blr1377 electron transfer flavoprotein beta subunit.


ensembl_gene_id: Rpdx1_4928
symbol: ADU46469.1
gene_biotype: protein_coding
description:
  TIGRFAM: ATP/cobalamin adenosyltransferase; KEGG: bra:BRADO6493 putative ATP:cob(I)alamin adenosyltransferase, monofunctional PduO type; PFAM: cobalamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.


ensembl_gene_id: Rpdx1_4930
symbol: ADU46471.1
gene_biotype: protein_coding
description:
  Ribonuclease BN; KEGG: nwi:Nwi_0750 ribonuclease BN; TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN.


ensembl_gene_id: Rpdx1_4931
symbol: ADU46472.1
gene_biotype: protein_coding
description:
  Histidine kinase; KEGG: bja:blr1373 two-component hybrid sensor and regulator; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver.


ensembl_gene_id: Rpdx1_4932
symbol: ADU46473.1
gene_biotype: protein_coding
description:
  PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; KEGG: bja:blr1372 glutamyl-Q tRNA(Asp) synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: Rpdx1_4933
symbol: ADU46474.1
gene_biotype: protein_coding
description:
  HhH-GPD family protein; KEGG: bja:bll1371 DNA-3-methyladenine glycosidase II; PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein.


ensembl_gene_id: Rpdx1_4934
symbol: ADU46475.1
gene_biotype: protein_coding
description:
  Transcriptional regulator NikR, CopG family; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family.


ensembl_gene_id: Rpdx1_4935
symbol: ADU46476.1
gene_biotype: protein_coding
description:
  PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bra:BRADO5677 putative iron transport outer membrane receptor.


ensembl_gene_id: Rpdx1_4937
symbol: ADU46478.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO0511 alpha-glucosidase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.


ensembl_gene_id: Rpdx1_4943
symbol: ADU46484.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll1113 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding.


ensembl_gene_id: Rpdx1_4944
symbol: ADU46485.1
gene_biotype: protein_coding
description:
  PFAM: multi antimicrobial extrusion protein MatE; KEGG: bra:BRADO6768 putative cation-driven multidrug efflux pump; putative membrane protein.


ensembl_gene_id: Rpdx1_4949
symbol: metZ
gene_biotype: protein_coding
description:
  O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.


ensembl_gene_id: Rpdx1_4950
symbol: ADU46491.1
gene_biotype: protein_coding
description:
  KEGG: mpo:Mpop_0125 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.


ensembl_gene_id: Rpdx1_4951
symbol: ADU46492.1
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; KEGG: met:M446_0136 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.


ensembl_gene_id: Rpdx1_4952
symbol: ADU46493.1
gene_biotype: protein_coding
description:
  Protein-disulfide reductase; KEGG: mpo:Mpop_0123 cytochrome c biogenesis protein transmembrane region; PFAM: cytochrome c biogenesis protein transmembrane region; Thioredoxin domain.


ensembl_gene_id: Rpdx1_4960
symbol: ADU46501.1
gene_biotype: protein_coding
description:
  Hsp33 protein; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress; Belongs to the HSP33 family.


ensembl_gene_id: Rpdx1_4961
symbol: arcB
gene_biotype: protein_coding
description:
  Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.


ensembl_gene_id: Rpdx1_4962
symbol: argD
gene_biotype: protein_coding
description:
  TIGRFAM: acetylornithine and succinylornithine aminotransferase; KEGG: nha:Nham_0642 acetylornithine transaminase protein; PFAM: aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.


ensembl_gene_id: Rpdx1_4964
symbol: ADU46505.1
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bra:BRADO1679 two-component regulatory system response regulator; SMART: response regulator receiver.


ensembl_gene_id: Rpdx1_4966
symbol: pstB
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, ATPase subunit; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.


ensembl_gene_id: Rpdx1_4967
symbol: ADU46508.1
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, inner membrane subunit PstA; KEGG: bra:BRADO1676 high-affinity phosphate ABC transporter membrane protein; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Rpdx1_4968
symbol: ADU46509.1
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, inner membrane subunit PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: Rpdx1_4969
symbol: ADU46510.1
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, periplasmic phosphate-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.


ensembl_gene_id: Rpdx1_4970
symbol: ADU46511.1
gene_biotype: protein_coding
description:
  Histidine kinase; KEGG: bja:blr1090 phosphate regulon, two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.


ensembl_gene_id: Rpdx1_4975
symbol: ADU46516.1
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbt:BBta_0751 putative short-chain dehydrogenase/reductase (SDR).


ensembl_gene_id: Rpdx1_4976
symbol: aroK-2
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family with shikimate kinase activity; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.


ensembl_gene_id: Rpdx1_4977
symbol: ADU46518.1
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: nha:Nham_3686 extracellular solute-binding protein.


ensembl_gene_id: Rpdx1_4978
symbol: ADU46519.1
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; KEGG: bja:bll1031 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein.


ensembl_gene_id: Rpdx1_4979
symbol: ADU46520.1
gene_biotype: protein_coding
description:
  TIGRFAM: phage head-tail adaptor; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; KEGG: nha:Nham_3684 response regulator receiver sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver.


ensembl_gene_id: Rpdx1_4980
symbol: ADU46521.1
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; KEGG: bja:bll1029 two-component response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.


ensembl_gene_id: Rpdx1_4981
symbol: ADU46522.1
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: bra:BRADO6834 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Rpdx1_4982
symbol: ADU46523.1
gene_biotype: protein_coding
description:
  PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: oca:OCAR_4639 cytochrome d ubiquinol oxidase subunit 1.


ensembl_gene_id: Rpdx1_4983
symbol: ADU46524.1
gene_biotype: protein_coding
description:
  KEGG: oca:OCAR_4638 cytochrome d ubiquinol oxidase subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II.


ensembl_gene_id: Rpdx1_4985
symbol: ADU46526.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO6838 general L-amino acid-binding periplasmic protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: Rpdx1_4992
symbol: ADU46532.1
gene_biotype: protein_coding
description:
  PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bja:bll4766 hypothetical protein.


ensembl_gene_id: Rpdx1_4996
symbol: ADU46536.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_0686 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_4999
symbol: ADU46539.1
gene_biotype: protein_coding
description:
  PFAM: membrane-associated protein in eicosanoid and glutathione metabolism (MAPEG); KEGG: bja:bll0998 hypothetical protein.


ensembl_gene_id: Rpdx1_5000
symbol: ADU46540.1
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: bja:blr0998 periplasmic substrate binding protein.


ensembl_gene_id: Rpdx1_5003
symbol: ADU46543.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_1886 periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein.


ensembl_gene_id: Rpdx1_5004
symbol: ADU46544.1
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; KEGG: nha:Nham_1885 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.


ensembl_gene_id: Rpdx1_5007
symbol: mtnA
gene_biotype: protein_coding
description:
  Translation initiation factor, aIF-2BI family; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).


ensembl_gene_id: Rpdx1_5008
symbol: mtnP
gene_biotype: protein_coding
description:
  Methylthioadenosine phosphorylase; Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates; Belongs to the PNP/MTAP phosphorylase family. MTAP subfamily.


ensembl_gene_id: Rpdx1_5011
symbol: ADU46551.1
gene_biotype: protein_coding
description:
  TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; PFAM: RQC domain; helicase domain protein; DEAD/DEAH box helicase domain protein; HRDC domain protein; KEGG: bbt:BBta_6924 ATP-dependent DNA helicase RecQ; SMART: DEAD-like helicase; helicase domain protein; HRDC domain protein.


ensembl_gene_id: Rpdx1_5012
symbol: ADU46552.1
gene_biotype: protein_coding
description:
  Regulatory protein, FmdB family; KEGG: azc:AZC_4413 hypothetical protein; TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB.


ensembl_gene_id: Rpdx1_5014
symbol: ADU46554.1
gene_biotype: protein_coding
description:
  PFAM: AMP-dependent synthetase and ligase; KEGG: bja:bll0843 putative crotonobetaine/carnitine-CoA ligase.


ensembl_gene_id: Rpdx1_5015
symbol: ADU46555.1
gene_biotype: protein_coding
description:
  PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: nha:Nham_4035 response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase.


ensembl_gene_id: Rpdx1_5018
symbol: ADU46558.1
gene_biotype: protein_coding
description:
  PFAM: polysaccharide export protein; Soluble ligand binding domain; KEGG: bja:blr0835 polysaccharide export protein.


