# geneInfo

ensembl_gene_id: Rpdx1_0001
symbol: dnaA
gene_biotype: protein_coding
description:
  Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.


ensembl_gene_id: Rpdx1_0002
symbol: ADU41647.1
gene_biotype: protein_coding
description:
  DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]


ensembl_gene_id: Rpdx1_0003
symbol: recF
gene_biotype: protein_coding
description:
  DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.


ensembl_gene_id: Rpdx1_0004
symbol: gyrB
gene_biotype: protein_coding
description:
  DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: Rpdx1_0005
symbol: ADU41650.1
gene_biotype: protein_coding
description:
  KEGG: mag:amb3054 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.


ensembl_gene_id: Rpdx1_0006
symbol: ADU41651.1
gene_biotype: protein_coding
description:
  TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; PAS fold-4 domain protein; KEGG: rru:Rru_A2544 signal transduction histidine kinase; SMART: PAS domain containing protein.


ensembl_gene_id: Rpdx1_0008
symbol: ADU41653.1
gene_biotype: protein_coding
description:
  PFAM: Circadian clock protein KaiC central region; KEGG: rsk:RSKD131_4430 circadian clock protein KaiC; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_0010
symbol: ADU41655.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, AsnC family; KEGG: bja:blr8125 transcriptional regulatory protein; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type.


ensembl_gene_id: Rpdx1_0013
symbol: ADU41658.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO2445 nitrogen fixation protein FixS; TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type.


ensembl_gene_id: Rpdx1_0014
symbol: ADU41659.1
gene_biotype: protein_coding
description:
  Copper-translocating P-type ATPase; KEGG: bbt:BBta_2797 nitrogen fixation protein FixI; TIGRFAM: copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase.


ensembl_gene_id: Rpdx1_0016
symbol: ADU41661.1
gene_biotype: protein_coding
description:
  TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: bbt:BBta_2795 nitrogen fixation protein.


ensembl_gene_id: Rpdx1_0017
symbol: ADU41662.1
gene_biotype: protein_coding
description:
  Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.


ensembl_gene_id: Rpdx1_0019
symbol: ADU41664.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_2793 cytochrome-c oxidase FixO chain; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO.


ensembl_gene_id: Rpdx1_0020
symbol: ADU41665.1
gene_biotype: protein_coding
description:
  TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; KEGG: bja:blr2763 cytochrome-c oxidase; PFAM: cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.


ensembl_gene_id: Rpdx1_0021
symbol: ADU41666.1
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bra:BRADO0329 putative acetoin(diacetyl) reductase (acetoin dehydrogenase) (AR) (meso-2,3-butanediol dehydrogenase); oxidoreductase, short chain dehydrogenase; putative short chain dehydrogenase.


ensembl_gene_id: Rpdx1_0023
symbol: ADU41668.1
gene_biotype: protein_coding
description:
  PFAM: Glutathione S-transferase domain; KEGG: bja:bll0585 glutathione S-transferase family protein; Belongs to the GST superfamily.


ensembl_gene_id: Rpdx1_0025
symbol: ADU41670.1
gene_biotype: protein_coding
description:
  TIGRFAM: gamma-glutamyltransferase; KEGG: nha:Nham_0191 gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase.


ensembl_gene_id: Rpdx1_0027
symbol: ADU41672.1
gene_biotype: protein_coding
description:
  Phospho-2-dehydro-3-deoxyheptonate aldolase; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP).


ensembl_gene_id: Rpdx1_0029
symbol: purH
gene_biotype: protein_coding
description:
  SMART: AICARFT/IMPCHase bienzyme formylation region; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; KEGG: bja:blr0581 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein.


ensembl_gene_id: Rpdx1_0031
symbol: ADU41675.1
gene_biotype: protein_coding
description:
  PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: bja:blr0579 SUN protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.


ensembl_gene_id: Rpdx1_0033
symbol: ADU41677.1
gene_biotype: protein_coding
description:
  Manually curated; PFAM: nuclease (SNase domain protein); KEGG: nwi:Nwi_0154 nuclease; SMART: nuclease (SNase domain protein).


ensembl_gene_id: Rpdx1_0036
symbol: pheT
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO0141 phenylalanyl-tRNA synthetase subunit beta; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit.


ensembl_gene_id: Rpdx1_0038
symbol: pheS
gene_biotype: protein_coding
description:
  KEGG: nwi:Nwi_0066 phenylalanyl-tRNA synthetase subunit alpha; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.


ensembl_gene_id: Rpdx1_0039
symbol: rplT
gene_biotype: protein_coding
description:
  Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.


ensembl_gene_id: Rpdx1_0040
symbol: rpmI
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_0216 50S ribosomal protein L35; TIGRFAM: ribosomal protein L35; PFAM: Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.


ensembl_gene_id: Rpdx1_0041
symbol: infC
gene_biotype: protein_coding
description:
  Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.


ensembl_gene_id: Rpdx1_0043
symbol: queG
gene_biotype: protein_coding
description:
  Domain of unknown function DUF1730; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family.


ensembl_gene_id: Rpdx1_0044
symbol: ADU41688.1
gene_biotype: protein_coding
description:
  PFAM: Glutathione S-transferase domain; KEGG: bbt:BBta_0222 putative glutathione S-transferase family protein.


ensembl_gene_id: Rpdx1_0045
symbol: uppP
gene_biotype: protein_coding
description:
  Undecaprenol kinase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.


ensembl_gene_id: Rpdx1_0046
symbol: ADU41690.1
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; KEGG: bra:BRADO0128 putative NAD dependent epimerase/dehydratase family protein.


ensembl_gene_id: Rpdx1_0051
symbol: ADU41695.1
gene_biotype: protein_coding
description:
  KEGG: nwi:Nwi_0174 ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_0052
symbol: ADU41696.1
gene_biotype: protein_coding
description:
  RNA polymerase, sigma 54 subunit, RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: Rpdx1_0053
symbol: hpf
gene_biotype: protein_coding
description:
  Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.


ensembl_gene_id: Rpdx1_0054
symbol: ADU41698.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO0111 nitrogen regulatory protein; TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2.


ensembl_gene_id: Rpdx1_0056
symbol: ADU41700.1
gene_biotype: protein_coding
description:
  PFAM: heat shock protein Hsp20; KEGG: oca:OCAR_4464 heat shock protein HSP20; Belongs to the small heat shock protein (HSP20) family.


ensembl_gene_id: Rpdx1_0057
symbol: ugpC
gene_biotype: protein_coding
description:
  ABC transporter related protein; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.


ensembl_gene_id: Rpdx1_0058
symbol: ugpE
gene_biotype: protein_coding
description:
  Binding-protein-dependent transport systems inner membrane component; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.


ensembl_gene_id: Rpdx1_0059
symbol: ADU41703.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:bll0732 glycerol-3-phosphate ABC transporter permease protein.


ensembl_gene_id: Rpdx1_0060
symbol: ADU41704.1
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: bja:bll0733 ABC transporter glycerol-3-phosphate-binding protein.


ensembl_gene_id: Rpdx1_0061
symbol: ADU41705.1
gene_biotype: protein_coding
description:
  Formyl-CoA transferase; KEGG: bja:bll0734 hypothetical protein; PFAM: L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.


ensembl_gene_id: Rpdx1_0063
symbol: aroA
gene_biotype: protein_coding
description:
  3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.


ensembl_gene_id: Rpdx1_0066
symbol: ADU41710.1
gene_biotype: protein_coding
description:
  Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.


ensembl_gene_id: Rpdx1_0067
symbol: ADU41711.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO0095 S49 family peptidase; TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49.


ensembl_gene_id: Rpdx1_0068
symbol: ihfB
gene_biotype: protein_coding
description:
  Integration host factor, beta subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.


ensembl_gene_id: Rpdx1_0070
symbol: trpF
gene_biotype: protein_coding
description:
  KEGG: nwi:Nwi_0056 N-(5'-phosphoribosyl)anthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); Belongs to the TrpF family.


ensembl_gene_id: Rpdx1_0071
symbol: trpB
gene_biotype: protein_coding
description:
  Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.


ensembl_gene_id: Rpdx1_0072
symbol: trpA
gene_biotype: protein_coding
description:
  Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.


ensembl_gene_id: Rpdx1_0073
symbol: accD
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA.


ensembl_gene_id: Rpdx1_0074
symbol: ADU41718.1
gene_biotype: protein_coding
description:
  TIGRFAM: FolC bifunctional protein; KEGG: nha:Nham_0060 FolC bifunctional protein; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; Belongs to the folylpolyglutamate synthase family.


ensembl_gene_id: Rpdx1_0075
symbol: ADU41719.1
gene_biotype: protein_coding
description:
  Thioredoxin; KEGG: oca:OCAR_4481 thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; Belongs to the thioredoxin family.


ensembl_gene_id: Rpdx1_0076
symbol: ADU41720.1
gene_biotype: protein_coding
description:
  TIGRFAM: double-strand break repair helicase AddA; KEGG: bja:bll0752 putative helicase 2; PFAM: UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.


ensembl_gene_id: Rpdx1_0077
symbol: ADU41721.1
gene_biotype: protein_coding
description:
  TIGRFAM: double-strand break repair protein AddB; KEGG: bbt:BBta_0089 DNA helicase/exodeoxyribonuclease V, subunit B.


ensembl_gene_id: Rpdx1_0080
symbol: ADU41724.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function UPF0079; aminoglycoside phosphotransferase; KEGG: nha:Nham_0054 hypothetical protein.


ensembl_gene_id: Rpdx1_0081
symbol: ADU41725.1
gene_biotype: protein_coding
description:
  PAS/PAC sensor signal transduction histidine kinase; Manually curated; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; KEGG: nwi:Nwi_0045 histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein.


ensembl_gene_id: Rpdx1_0082
symbol: dut
gene_biotype: protein_coding
description:
  Deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.


ensembl_gene_id: Rpdx1_0083
symbol: ADU41727.1
gene_biotype: protein_coding
description:
  Phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.


ensembl_gene_id: Rpdx1_0084
symbol: ADU41728.1
gene_biotype: protein_coding
description:
  2-polyprenylphenol 6-hydroxylase; KEGG: bbt:BBta_0082 2-octaprenylphenol hydroxylase; TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein.


ensembl_gene_id: Rpdx1_0085
symbol: ubiE
gene_biotype: protein_coding
description:
  Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).


ensembl_gene_id: Rpdx1_0086
symbol: mutM
gene_biotype: protein_coding
description:
  formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.


ensembl_gene_id: Rpdx1_0088
symbol: ADU41732.1
gene_biotype: protein_coding
description:
  PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: bra:BRADO0069 putative molybdopterin biosynthesis protein MoeB.


ensembl_gene_id: Rpdx1_0097
symbol: ADU41741.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_0992 secretion protein HlyD; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Rpdx1_0098
symbol: ADU41742.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_0993 hydrophobe/amphiphile efflux-1 HAE1; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein.


ensembl_gene_id: Rpdx1_0099
symbol: ADU41743.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1078 domain protein; KEGG: bra:BRADO6624 putative flagellar basal-body rod protein (FlgC); Belongs to the flagella basal body rod proteins family.


ensembl_gene_id: Rpdx1_0100
symbol: ADU41744.1
gene_biotype: protein_coding
description:
  TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: mrd:Mrad2831_4760 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Rpdx1_0101
symbol: ADU41745.1
gene_biotype: protein_coding
description:
  TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: mrd:Mrad2831_4761 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Rpdx1_0102
symbol: ADU41746.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mrd:Mrad2831_4762 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Rpdx1_0103
symbol: ADU41747.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mrd:Mrad2831_4763 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Rpdx1_0104
symbol: ADU41748.1
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: mrd:Mrad2831_4764 extracellular solute-binding protein.


ensembl_gene_id: Rpdx1_0106
symbol: ADU41750.1
gene_biotype: protein_coding
description:
  PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: mrd:Mrad2831_4765 cobalamin synthesis protein P47K.


ensembl_gene_id: Rpdx1_0108
symbol: ADU41752.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family with aminotransferase domain; KEGG: mrd:Mrad2831_4755 transcriptional regulator; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH.


ensembl_gene_id: Rpdx1_0110
symbol: ADU41754.1
gene_biotype: protein_coding
description:
  PFAM: Aldehyde Dehydrogenase; KEGG: mrd:Mrad2831_4757 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: Rpdx1_0116
symbol: ADU41760.1
gene_biotype: protein_coding
description:
  KEGG: ava:Ava_1003 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; GAF domain protein; PAS fold-2 domain protein; Phytochrome central region domain protein; SMART: ATP-binding region ATPase domain protein; GAF domain protein.


ensembl_gene_id: Rpdx1_0117
symbol: ADU41761.1
gene_biotype: protein_coding
description:
  PFAM: TrkA-N domain protein; Ion transport 2 domain protein; KEGG: app:CAP2UW1_2571 TrkA-N domain protein.


ensembl_gene_id: Rpdx1_0118
symbol: cpdA
gene_biotype: protein_coding
description:
  Metallophosphoesterase; Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes.


ensembl_gene_id: Rpdx1_0120
symbol: ADU41764.1
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: bmr:BMI_II1186 sugar ABC transporter, periplasmic sugar-binding protein, putative.


ensembl_gene_id: Rpdx1_0121
symbol: ADU41765.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bmr:BMI_II1187 sugar ABC transporter, permease protein, putative.


ensembl_gene_id: Rpdx1_0122
symbol: ADU41766.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oan:Oant_1668 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Rpdx1_0123
symbol: ADU41767.1
gene_biotype: protein_coding
description:
  KEGG: sil:SPO1823 sugar ABC transporter, ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Rpdx1_0124
symbol: ADU41768.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: azl:AZL_a10500 transcriptional regulator.


ensembl_gene_id: Rpdx1_0126
symbol: ADU41770.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_2682 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Rpdx1_0128
symbol: ADU41772.1
gene_biotype: protein_coding
description:
  Hydrogenase, Fe-only; KEGG: dvu:DVU1771 [Fe] hydrogenase gamma; TIGRFAM: hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; iron hydrogenase small subunit.


ensembl_gene_id: Rpdx1_0129
symbol: ADU41773.1
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; KEGG: dvl:Dvul_1383 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Rpdx1_0130
symbol: ADU41774.1
gene_biotype: protein_coding
description:
  Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; PAS fold domain protein; histidine kinase A domain protein; response regulator receiver; KEGG: bbt:BBta_0531 PAS/PAC sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; PAS domain containing protein; response regulator receiver.


ensembl_gene_id: Rpdx1_0131
symbol: rpmB
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_7548 50S ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.


ensembl_gene_id: Rpdx1_0133
symbol: ADU41777.1
gene_biotype: protein_coding
description:
  Helicase domain protein; KEGG: nha:Nham_0504 helicase-like; PFAM: helicase domain protein; SMART: helicase domain protein.


ensembl_gene_id: Rpdx1_0134
symbol: ADU41778.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_0505 RNA-binding S4; PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein.


ensembl_gene_id: Rpdx1_0135
symbol: ADU41779.1
gene_biotype: protein_coding
description:
  Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.


ensembl_gene_id: Rpdx1_0137
symbol: ADU41781.1
gene_biotype: protein_coding
description:
  PFAM: peptidase M48 Ste24p; Peptidoglycan-binding lysin domain; KEGG: nha:Nham_0508 peptidase M48, Ste24p.


ensembl_gene_id: Rpdx1_0140
symbol: ADU41784.1
gene_biotype: protein_coding
description:
  PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bbt:BBta_7538 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: Rpdx1_0142
symbol: ADU41786.1
gene_biotype: protein_coding
description:
  PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bja:blr0140 putative enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: Rpdx1_0149
symbol: ADU41793.1
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bja:blr0103 oxidoreductase.


ensembl_gene_id: Rpdx1_0151
symbol: ADU41795.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_7493 glutamate synthase domain-containing protein; PFAM: ferredoxin-dependent glutamate synthase; Belongs to the glutamate synthase family.


ensembl_gene_id: Rpdx1_0154
symbol: ADU41798.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_7481 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_0155
symbol: ADU41799.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nha:Nham_0427 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Rpdx1_0156
symbol: ADU41800.1
gene_biotype: protein_coding
description:
  PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: nha:Nham_0428 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.


ensembl_gene_id: Rpdx1_0158
symbol: ADU41802.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1254; protein of unknown function DUF1214; KEGG: rle:RL1126 hypothetical protein.


ensembl_gene_id: Rpdx1_0159
symbol: ADU41803.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO0028 succinate-semialdehyde dehydrogenase [NADP+] (SSDH); TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: Rpdx1_0164
symbol: murJ
gene_biotype: protein_coding
description:
  Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.


ensembl_gene_id: Rpdx1_0165
symbol: trpS
gene_biotype: protein_coding
description:
  tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: Rpdx1_0167
symbol: ADU41811.1
gene_biotype: protein_coding
description:
  PFAM: Scaffold protein Nfu/NifU; nitrogen-fixing NifU domain protein; KEGG: bbt:BBta_0040 putative NifU protein.


ensembl_gene_id: Rpdx1_0169
symbol: ADU41813.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll0798 putative acetyltransferase; TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase.


ensembl_gene_id: Rpdx1_0170
symbol: fur
gene_biotype: protein_coding
description:
  Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: bra:BRADO0039 ferric uptake regulator family protein; Belongs to the Fur family.


ensembl_gene_id: Rpdx1_0171
symbol: ADU41815.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll0796 hypothetical protein; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase.


ensembl_gene_id: Rpdx1_0172
symbol: miaB
gene_biotype: protein_coding
description:
  RNA modification enzyme, MiaB family; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.


ensembl_gene_id: Rpdx1_0173
symbol: ADU41817.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_0022 PhoH-like protein; PFAM: PhoH family protein; K Homology, type 1, subgroup; SMART: KH domain protein.


ensembl_gene_id: Rpdx1_0174
symbol: ybeY
gene_biotype: protein_coding
description:
  Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.


ensembl_gene_id: Rpdx1_0175
symbol: ADU41819.1
gene_biotype: protein_coding
description:
  CBS domain containing protein; KEGG: bja:bll0792 magnesium and cobalt efflux protein; PFAM: CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein.


ensembl_gene_id: Rpdx1_0176
symbol: lnt
gene_biotype: protein_coding
description:
  Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.


ensembl_gene_id: Rpdx1_0177
symbol: ADU41821.1
gene_biotype: protein_coding
description:
  Helix-turn-helix domain protein; KEGG: nha:Nham_0026 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.


ensembl_gene_id: Rpdx1_0178
symbol: trmB
gene_biotype: protein_coding
description:
  Putative methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.


ensembl_gene_id: Rpdx1_0181
symbol: rimP
gene_biotype: protein_coding
description:
  Protein of unknown function DUF150; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.


ensembl_gene_id: Rpdx1_0182
symbol: nusA
gene_biotype: protein_coding
description:
  Transcription termination factor NusA; Participates in both transcription termination and antitermination.


ensembl_gene_id: Rpdx1_0184
symbol: infB
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.


ensembl_gene_id: Rpdx1_0185
symbol: rbfA
gene_biotype: protein_coding
description:
  Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.


ensembl_gene_id: Rpdx1_0186
symbol: truB
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.


ensembl_gene_id: Rpdx1_0187
symbol: rpsO
gene_biotype: protein_coding
description:
  Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.


ensembl_gene_id: Rpdx1_0188
symbol: pnp
gene_biotype: protein_coding
description:
  Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.


ensembl_gene_id: Rpdx1_0189
symbol: ADU41833.1
gene_biotype: protein_coding
description:
  Manganese/iron superoxide dismutase-like protein; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.


ensembl_gene_id: Rpdx1_0190
symbol: ADU41834.1
gene_biotype: protein_coding
description:
  TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; chemotaxis sensory transducer; KEGG: bbt:BBta_2308 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; SMART: chemotaxis sensory transducer; PAC repeat-containing protein; PAS domain containing protein.


ensembl_gene_id: Rpdx1_0191
symbol: ADU41835.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: nwi:Nwi_0029 regulatory protein, LysR; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Rpdx1_0192
symbol: katG
gene_biotype: protein_coding
description:
  Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.


ensembl_gene_id: Rpdx1_0197
symbol: rpoH
gene_biotype: protein_coding
description:
  RNA polymerase, sigma 32 subunit, RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.


ensembl_gene_id: Rpdx1_0198
symbol: ADU41841.1
gene_biotype: protein_coding
description:
  Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: Rpdx1_0201
symbol: ADU41844.1
gene_biotype: protein_coding
description:
  Helix-turn-helix domain protein; KEGG: bmb:BruAb1_0263 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.


ensembl_gene_id: Rpdx1_0204
symbol: ADU41847.1
gene_biotype: protein_coding
description:
  PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: met:M446_7059 hypothetical protein.


ensembl_gene_id: Rpdx1_0207
symbol: ADU41850.1
gene_biotype: protein_coding
description:
  Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; manually curated; TIGRFAM: diguanylate cyclase; PAS sensor protein; KEGG: tgr:Tgr7_2681 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-3 domain protein.


ensembl_gene_id: Rpdx1_0208
symbol: ADU41851.1
gene_biotype: protein_coding
description:
  KEGG: mgm:Mmc1_0771 methionine gamma-lyase; TIGRFAM: methionine gamma-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein.


ensembl_gene_id: Rpdx1_0209
symbol: ADU41852.1
gene_biotype: protein_coding
description:
  KEGG: oan:Oant_0505 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type.


ensembl_gene_id: Rpdx1_0211
symbol: ADU41854.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr6070 putative alcohol dehydrogenase; TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein.


ensembl_gene_id: Rpdx1_0213
symbol: pcm
gene_biotype: protein_coding
description:
  protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.


ensembl_gene_id: Rpdx1_0216
symbol: ADU41859.1
gene_biotype: protein_coding
description:
  TIGRFAM: 1-phosphofructokinase; KEGG: bbt:BBta_6479 6-phosphofructokinase; PFAM: PfkB domain protein; Belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: Rpdx1_0217
symbol: ADU41860.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_3664 putative oxidoreductase alpha (molybdopterin) subunit; TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: Rpdx1_0218
symbol: glgC
gene_biotype: protein_coding
description:
  Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.


ensembl_gene_id: Rpdx1_0220
symbol: ADU41863.1
gene_biotype: protein_coding
description:
  PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pzu:PHZ_c3300 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: Rpdx1_0221
symbol: ADU41864.1
gene_biotype: protein_coding
description:
  KEGG: nwi:Nwi_0335 DNA repair protein RadC; TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; Belongs to the UPF0758 family.


ensembl_gene_id: Rpdx1_0223
symbol: ku
gene_biotype: protein_coding
description:
  Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.


ensembl_gene_id: Rpdx1_0224
symbol: map
gene_biotype: protein_coding
description:
  Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.


ensembl_gene_id: Rpdx1_0225
symbol: ADU41868.1
gene_biotype: protein_coding
description:
  PFAM: sodium/hydrogen exchanger; transporter-associated region; KEGG: nwi:Nwi_0337 potassium/proton antiporter.


ensembl_gene_id: Rpdx1_0226
symbol: ADU41869.1
gene_biotype: protein_coding
description:
  PFAM: peptidase U6 penicillin-insensitive murein endopeptidase; KEGG: nwi:Nwi_0341 penicillin-insensitive murein endopeptidase.


ensembl_gene_id: Rpdx1_0227
symbol: ADU41870.1
gene_biotype: protein_coding
description:
  Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: bja:bll8156 hypothetical protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein.


ensembl_gene_id: Rpdx1_0228
symbol: ADU41871.1
gene_biotype: protein_coding
description:
  KEGG: rru:Rru_A1289 alkaline phosphatase; PFAM: Alkaline phosphatase; SMART: Alkaline phosphatase; Belongs to the alkaline phosphatase family.


ensembl_gene_id: Rpdx1_0229
symbol: ADU41872.1
gene_biotype: protein_coding
description:
  PFAM: transposase IS116/IS110/IS902 family protein; KEGG: met:M446_5547 transposase IS116/IS110/IS902 family protein.


ensembl_gene_id: Rpdx1_0230
symbol: ADU41873.1
gene_biotype: protein_coding
description:
  PFAM: transposase IS116/IS110/IS902 family protein; KEGG: cak:Caul_4355 transposase IS116/IS110/IS902 family protein.


ensembl_gene_id: Rpdx1_0231
symbol: argG
gene_biotype: protein_coding
description:
  TIGRFAM: argininosuccinate synthase; KEGG: oca:OCAR_4294 argininosuccinate synthase; PFAM: argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 2 subfamily.


ensembl_gene_id: Rpdx1_0232
symbol: ADU41875.1
gene_biotype: protein_coding
description:
  PFAM: phosphoesterase PA-phosphatase related; KEGG: nwi:Nwi_2804 phosphoesterase, PA-phosphatase related.


ensembl_gene_id: Rpdx1_0234
symbol: ADU41877.1
gene_biotype: protein_coding
description:
  KEGG: bac:BamMC406_4894 metal-dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region.


ensembl_gene_id: Rpdx1_0235
symbol: rlmN
gene_biotype: protein_coding
description:
  Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.


ensembl_gene_id: Rpdx1_0238
symbol: ADU41881.1
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bbt:BBta_0243 putative quinone oxidoreductase (NADPH) and Zn-dependent alcohol dehydrogenase.


ensembl_gene_id: Rpdx1_0239
symbol: ADU41882.1
gene_biotype: protein_coding
description:
  All-trans-retinol 13,14-reductase; KEGG: bbt:BBta_7528 putative phytoene dehydrogenase and related proteins; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase.


ensembl_gene_id: Rpdx1_0242
symbol: ADU41885.1
gene_biotype: protein_coding
description:
  PFAM: transcriptional coactivator/pterin dehydratase; KEGG: nwi:Nwi_2809 pterin-4-alpha-carbinolamine dehydratase.


ensembl_gene_id: Rpdx1_0245
symbol: ADU41888.1
gene_biotype: protein_coding
description:
  TonB-dependent siderophore receptor; KEGG: azl:AZL_004810 iron complex outermembrane recepter protein; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.


ensembl_gene_id: Rpdx1_0246
symbol: ADU41889.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO0265 GTP-binding protein TypA/BipA (tyrosine phosphorylated protein A); TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain protein.


ensembl_gene_id: Rpdx1_0249
symbol: ppa
gene_biotype: protein_coding
description:
  Inorganic diphosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.


ensembl_gene_id: Rpdx1_0250
symbol: ADU41893.1
gene_biotype: protein_coding
description:
  PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: bra:BRADO0276 hypothetical protein.


ensembl_gene_id: Rpdx1_0251
symbol: folD
gene_biotype: protein_coding
description:
  Methylenetetrahydrofolate dehydrogenase (NADP(+)); Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.


ensembl_gene_id: Rpdx1_0252
symbol: ADU41895.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF167; KEGG: nwi:Nwi_0479 hypothetical protein; Belongs to the UPF0235 family.


ensembl_gene_id: Rpdx1_0253
symbol: ADU41896.1
gene_biotype: protein_coding
description:
  Protein of unknown function YGGT; KEGG: nwi:Nwi_0478 hypothetical protein; manually curated; PFAM: protein of unknown function YGGT.


ensembl_gene_id: Rpdx1_0256
symbol: ADU41899.1
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: nha:Nham_0606 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Rpdx1_0258
symbol: ADU41901.1
gene_biotype: protein_coding
description:
  PFAM: cytochrome P450; KEGG: bbt:BBta_0276 putative cytochrome P450 hydroxylase superfamily protein.


ensembl_gene_id: Rpdx1_0259
symbol: ADU41902.1
gene_biotype: protein_coding
description:
  Glyoxylate reductase; KEGG: bja:bll0766 2-hydroxyacid dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region.


ensembl_gene_id: Rpdx1_0261
symbol: fur-2
gene_biotype: protein_coding
description:
  KEGG: oca:OCAR_4496 ferric uptake regulator, FUR family; manually curated; PFAM: ferric-uptake regulator; Belongs to the Fur family.


ensembl_gene_id: Rpdx1_0262
symbol: fabA
gene_biotype: protein_coding
description:
  Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA; Necessary for the introduction of cis unsaturation into fatty acids. Catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to E- (2)-decenoyl-ACP and then its isomerization to Z-(3)-decenoyl-ACP. Can catalyze the dehydratase reaction for beta-hydroxyacyl-ACPs with saturated chain lengths up to 16:0, being most active on intermediate chain length.


ensembl_gene_id: Rpdx1_0263
symbol: ADU41906.1
gene_biotype: protein_coding
description:
  PFAM: Beta-ketoacyl synthase; KEGG: oca:OCAR_4498 3-oxoacyl-(acyl carrier protein) synthase I; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: Rpdx1_0264
symbol: ADU41907.1
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bja:blr0771 enoyl-(acyl carrier protein) reductase.


ensembl_gene_id: Rpdx1_0266
symbol: pckA
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA.


ensembl_gene_id: Rpdx1_0267
symbol: ADU41909.1
gene_biotype: protein_coding
description:
  PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: bja:bll8143 hypothetical protein.


ensembl_gene_id: Rpdx1_0268
symbol: ADU41910.1
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; KEGG: bja:blr8144 two-component response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.


ensembl_gene_id: Rpdx1_0269
symbol: ADU41911.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_0442 periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein.


ensembl_gene_id: Rpdx1_0271
symbol: ADU41913.1
gene_biotype: protein_coding
description:
  PFAM: PTS system fructose subfamily IIA component; KEGG: nha:Nham_0440 PTS system fructose subfamily IIA component.


ensembl_gene_id: Rpdx1_0272
symbol: ADU41914.1
gene_biotype: protein_coding
description:
  Phosphotransferase system, phosphocarrier protein HPr; KEGG: nha:Nham_0439 HPrNtr; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr.


ensembl_gene_id: Rpdx1_0274
symbol: lepA
gene_biotype: protein_coding
description:
  GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.


ensembl_gene_id: Rpdx1_0276
symbol: ADU41918.1
gene_biotype: protein_coding
description:
  DNA mismatch endonuclease Vsr; May nick specific sequences that contain T:G mispairs resulting from m5C-deamination.


ensembl_gene_id: Rpdx1_0277
symbol: ADU41919.1
gene_biotype: protein_coding
description:
  KEGG: ade:Adeh_3442 DNA-cytosine methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.


ensembl_gene_id: Rpdx1_0279
symbol: aceK
gene_biotype: protein_coding
description:
  (Isocitrate dehydrogenase (NADP(+))) kinase; Bifunctional enzyme which can phosphorylate or dephosphorylate isocitrate dehydrogenase (IDH) on a specific serine residue. This is a regulatory mechanism which enables bacteria to bypass the Krebs cycle via the glyoxylate shunt in response to the source of carbon. When bacteria are grown on glucose, IDH is fully active and unphosphorylated, but when grown on acetate or ethanol, the activity of IDH declines drastically concomitant with its phosphorylation.


ensembl_gene_id: Rpdx1_0282
symbol: ADU41924.1
gene_biotype: protein_coding
description:
  KEGG: rce:RC1_2083 magnesium-chelatase 30 kDa subunit; TIGRFAM: magnesium chelatase accessory protein; PFAM: alpha/beta hydrolase fold.


ensembl_gene_id: Rpdx1_0284
symbol: nth
gene_biotype: protein_coding
description:
  Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.


ensembl_gene_id: Rpdx1_0285
symbol: ADU41927.1
gene_biotype: protein_coding
description:
  KEGG: nwi:Nwi_0204 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF2244, transmembrane.


ensembl_gene_id: Rpdx1_0286
symbol: ADU41928.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; helix-turn-helix- domain containing protein AraC type; KEGG: bja:bll0687 transcriptional regulatory protein; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Rpdx1_0287
symbol: gpmI
gene_biotype: protein_coding
description:
  Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.


ensembl_gene_id: Rpdx1_0288
symbol: dapB
gene_biotype: protein_coding
description:
  Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.


ensembl_gene_id: Rpdx1_0290
symbol: pyrF
gene_biotype: protein_coding
description:
  Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.


ensembl_gene_id: Rpdx1_0292
symbol: ADU41934.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_0193 phospholipid N-methyltransferase; PFAM: ribosomal RNA adenine methylase transferase; SMART: Ribosomal RNA adenine methylase transferase-like.


ensembl_gene_id: Rpdx1_0293
symbol: dnaJ
gene_biotype: protein_coding
description:
  Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]


ensembl_gene_id: Rpdx1_0296
symbol: grpE
gene_biotype: protein_coding
description:
  GrpE protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent i [...]


ensembl_gene_id: Rpdx1_0297
symbol: hrcA
gene_biotype: protein_coding
description:
  Heat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons.


ensembl_gene_id: Rpdx1_0298
symbol: rph
gene_biotype: protein_coding
description:
  Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.


ensembl_gene_id: Rpdx1_0299
symbol: ADU41941.1
gene_biotype: protein_coding
description:
  Non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.


ensembl_gene_id: Rpdx1_0300
symbol: ADU41942.1
gene_biotype: protein_coding
description:
  Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: Rpdx1_0301
symbol: ADU41943.1
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: nha:Nham_0148 extracellular ligand-binding receptor.


ensembl_gene_id: Rpdx1_0302
symbol: rsmI
gene_biotype: protein_coding
description:
  Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.


ensembl_gene_id: Rpdx1_0303
symbol: ADU41945.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function UPF0102; KEGG: bra:BRADO0179 hypothetical protein; Belongs to the UPF0102 family.


ensembl_gene_id: Rpdx1_0304
symbol: gshB
gene_biotype: protein_coding
description:
  TIGRFAM: glutathione synthetase; KEGG: nha:Nham_0145 glutathione synthetase; PFAM: glutathione synthetase ATP-binding; glutathione synthetase domain protein; Belongs to the prokaryotic GSH synthase family.


ensembl_gene_id: Rpdx1_0305
symbol: ADU41947.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_7112 LuxR family transcriptional regulator; PFAM: Autoinducer-binding domain protein; regulatory protein LuxR; SMART: regulatory protein LuxR.


ensembl_gene_id: Rpdx1_0306
symbol: ADU41948.1
gene_biotype: protein_coding
description:
  PFAM: autoinducer synthesis protein; KEGG: bra:BRADO0941 putative autoinducer (acylhomoserine lactone) synthase.


ensembl_gene_id: Rpdx1_0308
symbol: ADU41950.1
gene_biotype: protein_coding
description:
  TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; KEGG: bja:bll0661 hypothetical protein; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_0309
symbol: ADU41951.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_0129 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver.


ensembl_gene_id: Rpdx1_0312
symbol: hisE
gene_biotype: protein_coding
description:
  KEGG: bja:blr0655 phosphoribosyl-ATP pyrophosphatase; TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase-like.


ensembl_gene_id: Rpdx1_0313
symbol: hisF
gene_biotype: protein_coding
description:
  Imidazoleglycerol phosphate synthase, cyclase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.


ensembl_gene_id: Rpdx1_0314
symbol: hisA
gene_biotype: protein_coding
description:
  TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; KEGG: bbt:BBta_0145 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; PFAM: histidine biosynthesis protein.


ensembl_gene_id: Rpdx1_0316
symbol: hisH
gene_biotype: protein_coding
description:
  Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.


ensembl_gene_id: Rpdx1_0318
symbol: hisB
gene_biotype: protein_coding
description:
  KEGG: bja:blr0650 imidazoleglycerol-phosphate dehydratase; PFAM: imidazoleglycerol-phosphate dehydratase.


ensembl_gene_id: Rpdx1_0319
symbol: hslV
gene_biotype: protein_coding
description:
  20S proteasome A and B subunits; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.


ensembl_gene_id: Rpdx1_0320
symbol: hslU
gene_biotype: protein_coding
description:
  Heat shock protein HslVU, ATPase subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis.


ensembl_gene_id: Rpdx1_0321
symbol: ADU41963.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO0206 putative Smr protein/MutS2 C-terminal; PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2.


ensembl_gene_id: Rpdx1_0323
symbol: ADU41965.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr0642 hypothetical protein; manually curated; PFAM: import inner membrane translocase subunit Tim44.


ensembl_gene_id: Rpdx1_0324
symbol: secB
gene_biotype: protein_coding
description:
  Protein-export protein SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.


ensembl_gene_id: Rpdx1_0325
symbol: dnaQ
gene_biotype: protein_coding
description:
  DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.


ensembl_gene_id: Rpdx1_0326
symbol: coaE
gene_biotype: protein_coding
description:
  dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.


ensembl_gene_id: Rpdx1_0327
symbol: ADU41969.1
gene_biotype: protein_coding
description:
  Maf family protein; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.


ensembl_gene_id: Rpdx1_0328
symbol: ADU41970.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF299; Bifunctional serine/threonine kinase and phosphorylase involved in the regulation of the pyruvate, phosphate dikinase (PPDK) by catalyzing its phosphorylation/dephosphorylation.


ensembl_gene_id: Rpdx1_0330
symbol: rho
gene_biotype: protein_coding
description:
  Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.


ensembl_gene_id: Rpdx1_0331
symbol: mnmE
gene_biotype: protein_coding
description:
  tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.


ensembl_gene_id: Rpdx1_0332
symbol: mnmG
gene_biotype: protein_coding
description:
  Glucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.


ensembl_gene_id: Rpdx1_0333
symbol: rsmG
gene_biotype: protein_coding
description:
  Methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.


ensembl_gene_id: Rpdx1_0335
symbol: ADU41977.1
gene_biotype: protein_coding
description:
  TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: nwi:Nwi_0094 ParB-like partition protein; SMART: ParB domain protein nuclease; Belongs to the ParB family.


ensembl_gene_id: Rpdx1_0336
symbol: ADU41978.1
gene_biotype: protein_coding
description:
  PFAM: transposase IS116/IS110/IS902 family protein; KEGG: sme:SM_b20636 putative transposase of insertion sequence ISRm19 protein.


ensembl_gene_id: Rpdx1_0337
symbol: ADU41979.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr0629 DNA polymerase III subunit delta; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta.


ensembl_gene_id: Rpdx1_0339
symbol: leuS
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_0171 leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: Rpdx1_0340
symbol: ADU41982.1
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: bja:blr0624 hypothetical protein; SMART: GGDEF domain containing protein; histidine kinase HAMP region domain protein.


ensembl_gene_id: Rpdx1_0341
symbol: ADU41983.1
gene_biotype: protein_coding
description:
  Alanine racemase domain protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.


ensembl_gene_id: Rpdx1_0343
symbol: ADU41985.1
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; KEGG: bja:bll0620 two-component response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.


ensembl_gene_id: Rpdx1_0344
symbol: ADU41986.1
gene_biotype: protein_coding
description:
  Putative transcriptional regulator, Crp/Fnr family; KEGG: bja:bll0619 hypothetical protein; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding.


ensembl_gene_id: Rpdx1_0345
symbol: ADU41987.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO0181 putative exodeoxyribonuclease III (XthA); TIGRFAM: exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase.


ensembl_gene_id: Rpdx1_0347
symbol: ADU41989.1
gene_biotype: protein_coding
description:
  Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).


ensembl_gene_id: Rpdx1_0348
symbol: ADU41990.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr0616 cell division protein; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_0354
symbol: ADU41995.1
gene_biotype: protein_coding
description:
  PFAM: nitrogen regulatory protein P-II; KEGG: bja:blr0612 nitrogen regulatory protein PII; Belongs to the P(II) protein family.


ensembl_gene_id: Rpdx1_0355
symbol: ADU41996.1
gene_biotype: protein_coding
description:
  PFAM: nitrogen regulatory protein P-II; KEGG: bbt:BBta_0295 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.


ensembl_gene_id: Rpdx1_0356
symbol: ADU41997.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_0297 acyl-CoA thioesterase II; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase.


ensembl_gene_id: Rpdx1_0357
symbol: ADU41998.1
gene_biotype: protein_coding
description:
  KEGG: nwi:Nwi_0079 2-octaprenyl-6-methoxyphenyl hydroxylase; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding.


ensembl_gene_id: Rpdx1_0358
symbol: ADU41999.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF343; KEGG: nha:Nham_0083 hypothetical protein; Belongs to the UPF0434 family.


ensembl_gene_id: Rpdx1_0359
symbol: ADU42000.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr0595 hypothetical protein; PFAM: peptidase S16 lon domain protein; SMART: peptidase S16 lon domain protein.


ensembl_gene_id: Rpdx1_0360
symbol: ADU42001.1
gene_biotype: protein_coding
description:
  Thioredoxin; KEGG: bra:BRADO0321 putative thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin domain.


ensembl_gene_id: Rpdx1_0361
symbol: ADU42002.1
gene_biotype: protein_coding
description:
  PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: azl:AZL_019970 membrane bound O-acyl transferase; Belongs to the membrane-bound acyltransferase family.


ensembl_gene_id: Rpdx1_0363
symbol: ADU42004.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: msl:Msil_2835 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Rpdx1_0366
symbol: ADU42007.1
gene_biotype: protein_coding
description:
  Rhodanese domain protein; KEGG: bra:BRADO2770 putative thiosulfate sulfurtransferase (rhodanese-like protein); PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein.


ensembl_gene_id: Rpdx1_0372
symbol: ADU42013.1
gene_biotype: protein_coding
description:
  KEGG: alv:Alvin_2545 ribulose-bisphosphate carboxylase; PFAM: ribulose bisphosphate carboxylase large chain; Belongs to the RuBisCO large chain family.


ensembl_gene_id: Rpdx1_0375
symbol: ADU42016.1
gene_biotype: protein_coding
description:
  KEGG: avi:Avi_4013 methyl-accepting chemotaxis protein; PFAM: histidine kinase HAMP region domain protein; SMART: histidine kinase HAMP region domain protein.


ensembl_gene_id: Rpdx1_0378
symbol: ADU42019.1
gene_biotype: protein_coding
description:
  Uroporphyrinogen III synthase HEM4; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.


ensembl_gene_id: Rpdx1_0379
symbol: tsaD
gene_biotype: protein_coding
description:
  Metalloendopeptidase, glycoprotease family; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.


ensembl_gene_id: Rpdx1_0380
symbol: gpsA
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: bbt:BBta_0290 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: Rpdx1_0383
symbol: ADU42024.1
gene_biotype: protein_coding
description:
  TIGRFAM: MiaB-like tRNA modifying enzyme; RNA modification enzyme, MiaB family; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; KEGG: bra:BRADO0384 putative MiaB-like tRNA modifying enzyme; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: Rpdx1_0384
symbol: dapF
gene_biotype: protein_coding
description:
  Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.


ensembl_gene_id: Rpdx1_0390
symbol: ffh
gene_biotype: protein_coding
description:
  Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...]


ensembl_gene_id: Rpdx1_0391
symbol: rpsP
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO0378 30S ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.


ensembl_gene_id: Rpdx1_0392
symbol: rimM
gene_biotype: protein_coding
description:
  16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.


ensembl_gene_id: Rpdx1_0393
symbol: trmD
gene_biotype: protein_coding
description:
  tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.


ensembl_gene_id: Rpdx1_0394
symbol: rplS
gene_biotype: protein_coding
description:
  Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.


ensembl_gene_id: Rpdx1_0395
symbol: leuC
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.


ensembl_gene_id: Rpdx1_0400
symbol: leuD
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.


ensembl_gene_id: Rpdx1_0401
symbol: ADU42042.1
gene_biotype: protein_coding
description:
  KEGG: mag:amb3991 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.


ensembl_gene_id: Rpdx1_0402
symbol: ADU42043.1
gene_biotype: protein_coding
description:
  Citryl-CoA lyase; KEGG: bbt:BBta_0347 putative citrate lyase beta chain; PFAM: HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.


ensembl_gene_id: Rpdx1_0403
symbol: ADU42044.1
gene_biotype: protein_coding
description:
  Carbonate dehydratase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.


ensembl_gene_id: Rpdx1_0405
symbol: asd
gene_biotype: protein_coding
description:
  Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.


ensembl_gene_id: Rpdx1_0408
symbol: ADU42049.1
gene_biotype: protein_coding
description:
  KEGG: rle:RL2002 putative transposase-related protein; manually curated; PFAM: transposase IS4 family protein.


ensembl_gene_id: Rpdx1_0409
symbol: leuB
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.


ensembl_gene_id: Rpdx1_0412
symbol: ADU42053.1
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase molybdopterin binding; KEGG: nha:Nham_3598 oxidoreductase, molybdopterin binding.


ensembl_gene_id: Rpdx1_0414
symbol: ADU42055.1
gene_biotype: protein_coding
description:
  beta-Ig-H3/fasciclin; KEGG: bbt:BBta_0336 Fas1 domain-containing protein; PFAM: beta-Ig-H3/fasciclin; SMART: beta-Ig-H3/fasciclin.


ensembl_gene_id: Rpdx1_0416
symbol: ADU42057.1
gene_biotype: protein_coding
description:
  KEGG: met:M446_3953 cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein.


ensembl_gene_id: Rpdx1_0417
symbol: ADU42058.1
gene_biotype: protein_coding
description:
  Manually curated; TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; KEGG: bja:blr0512 succinate dehydrogenase cytochrome b-556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit.


ensembl_gene_id: Rpdx1_0418
symbol: ADU42059.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_3617 succinate dehydrogenase, cytochrome b subunit; TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; PFAM: succinate dehydrogenase cytochrome b subunit.


ensembl_gene_id: Rpdx1_0419
symbol: ADU42060.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_0230 succinate dehydrogenase flavoprotein subunit; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.


ensembl_gene_id: Rpdx1_0420
symbol: ADU42061.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr0515 succinate dehydrogenase iron-sulfur subunit; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.


ensembl_gene_id: Rpdx1_0421
symbol: ADU42062.1
gene_biotype: protein_coding
description:
  PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: bbt:BBta_0235 hypothetical protein.


ensembl_gene_id: Rpdx1_0426
symbol: acsA
gene_biotype: protein_coding
description:
  acetate/CoA ligase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.


ensembl_gene_id: Rpdx1_0427
symbol: ADU42068.1
gene_biotype: protein_coding
description:
  PFAM: pseudouridine synthase; KEGG: bra:BRADO0385 putative RNA pseudouridine synthase (uracil hydrolyase).


ensembl_gene_id: Rpdx1_0428
symbol: ftsY
gene_biotype: protein_coding
description:
  Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.


ensembl_gene_id: Rpdx1_0429
symbol: ADU42070.1
gene_biotype: protein_coding
description:
  Intracellular septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.


ensembl_gene_id: Rpdx1_0431
symbol: ADU42072.1
gene_biotype: protein_coding
description:
  KEGG: nwi:Nwi_0318 periplasmic protein thiol-disulfide oxidoreductase DsbE; TIGRFAM: periplasmic protein thiol/disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein.


ensembl_gene_id: Rpdx1_0432
symbol: ADU42073.1
gene_biotype: protein_coding
description:
  Heme exporter protein CcmD; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family.


ensembl_gene_id: Rpdx1_0433
symbol: ccmC
gene_biotype: protein_coding
description:
  Heme exporter protein CcmC; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.


ensembl_gene_id: Rpdx1_0434
symbol: ADU42075.1
gene_biotype: protein_coding
description:
  Heme exporter protein CcmB; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.


ensembl_gene_id: Rpdx1_0435
symbol: ccmA
gene_biotype: protein_coding
description:
  Heme exporter protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.


ensembl_gene_id: Rpdx1_0440
symbol: ADU42081.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function UPF0005; KEGG: oca:OCAR_4575 integral membrane protein; Belongs to the BI1 family.


ensembl_gene_id: Rpdx1_0442
symbol: ADU42083.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr0460 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_0443
symbol: ADU42084.1
gene_biotype: protein_coding
description:
  PFAM: lipolytic protein G-D-S-L family; KEGG: bra:BRADO0400 multifunctional: acyl-CoA thioesterase I; protease I; lysophospholipasel(I).


ensembl_gene_id: Rpdx1_0444
symbol: ADU42085.1
gene_biotype: protein_coding
description:
  2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.


ensembl_gene_id: Rpdx1_0446
symbol: mdh
gene_biotype: protein_coding
description:
  Malate dehydrogenase, NAD-dependent; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.


ensembl_gene_id: Rpdx1_0447
symbol: sucC
gene_biotype: protein_coding
description:
  succinyl-CoA synthetase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.


ensembl_gene_id: Rpdx1_0448
symbol: sucD
gene_biotype: protein_coding
description:
  succinyl-CoA synthetase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.


ensembl_gene_id: Rpdx1_0449
symbol: ADU42090.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_0395 2-oxoglutarate dehydrogenase E1 component; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: Transketolase central region; dehydrogenase E1 component.


ensembl_gene_id: Rpdx1_0450
symbol: ADU42091.1
gene_biotype: protein_coding
description:
  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).


ensembl_gene_id: Rpdx1_0453
symbol: ADU42094.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_0398 dihydrolipoamide dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region.


ensembl_gene_id: Rpdx1_0457
symbol: xerC
gene_biotype: protein_coding
description:
  Integrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: Rpdx1_0458
symbol: priA
gene_biotype: protein_coding
description:
  Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.


ensembl_gene_id: Rpdx1_0459
symbol: rlpA
gene_biotype: protein_coding
description:
  Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.


ensembl_gene_id: Rpdx1_0460
symbol: atpH
gene_biotype: protein_coding
description:
  ATP synthase F1, delta subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: Rpdx1_0461
symbol: atpA
gene_biotype: protein_coding
description:
  ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.


ensembl_gene_id: Rpdx1_0462
symbol: atpG
gene_biotype: protein_coding
description:
  ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.


ensembl_gene_id: Rpdx1_0463
symbol: atpD
gene_biotype: protein_coding
description:
  ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.


ensembl_gene_id: Rpdx1_0464
symbol: atpC
gene_biotype: protein_coding
description:
  ATP synthase F1, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.


ensembl_gene_id: Rpdx1_0465
symbol: ADU42106.1
gene_biotype: protein_coding
description:
  NUDIX hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family.


ensembl_gene_id: Rpdx1_0468
symbol: rppH
gene_biotype: protein_coding
description:
  NUDIX hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily.


ensembl_gene_id: Rpdx1_0469
symbol: ADU42110.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF610 YibQ; KEGG: nha:Nham_0526 protein of unknown function DUF610, YibQ.


ensembl_gene_id: Rpdx1_0470
symbol: ADU42111.1
gene_biotype: protein_coding
description:
  Carboxyl-terminal protease; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; TIGRFAM: carboxyl-terminal protease; KEGG: bja:blr0434 carboxy-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; Belongs to the peptidase S41A family.


ensembl_gene_id: Rpdx1_0472
symbol: rlmH
gene_biotype: protein_coding
description:
  Protein of unknown function DUF163; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.


ensembl_gene_id: Rpdx1_0473
symbol: rsfS
gene_biotype: protein_coding
description:
  Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.


ensembl_gene_id: Rpdx1_0474
symbol: nadD
gene_biotype: protein_coding
description:
  Nicotinate (nicotinamide) nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).


ensembl_gene_id: Rpdx1_0475
symbol: proA
gene_biotype: protein_coding
description:
  Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.


ensembl_gene_id: Rpdx1_0476
symbol: ADU42117.1
gene_biotype: protein_coding
description:
  TIGRFAM: addiction module antidote protein, CC2985 family; KEGG: mpo:Mpop_0594 putative addiction module antidote protein, CopG/Arc/MetJ family.


ensembl_gene_id: Rpdx1_0478
symbol: proB
gene_biotype: protein_coding
description:
  Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.


ensembl_gene_id: Rpdx1_0479
symbol: obg
gene_biotype: protein_coding
description:
  GTP-binding protein Obg/CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.


ensembl_gene_id: Rpdx1_0484
symbol: rpmA
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_0515 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.


ensembl_gene_id: Rpdx1_0485
symbol: rplU
gene_biotype: protein_coding
description:
  Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.


ensembl_gene_id: Rpdx1_0488
symbol: ADU42128.1
gene_biotype: protein_coding
description:
  Helix-turn-helix domain protein; KEGG: bja:bsl1986 transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.


ensembl_gene_id: Rpdx1_0491
symbol: ADU42131.1
gene_biotype: protein_coding
description:
  TIGRFAM: hydrogenase (NiFe) small subunit HydA; KEGG: bja:bll6942 uptake hydrogenase precursor; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit.


ensembl_gene_id: Rpdx1_0492
symbol: ADU42132.1
gene_biotype: protein_coding
description:
  PFAM: nickel-dependent hydrogenase large subunit; KEGG: bbt:BBta_1997 uptake hydrogenase large subunit precursor; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.


ensembl_gene_id: Rpdx1_0493
symbol: ADU42133.1
gene_biotype: protein_coding
description:
  TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; KEGG: bja:blr6947 Ni/Fe-hydrogenase B-type cytochrome subunit.


ensembl_gene_id: Rpdx1_0494
symbol: ADU42134.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll6939 HupD protein; TIGRFAM: hydrogenase expression/formation protein; hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein.


ensembl_gene_id: Rpdx1_0496
symbol: ADU42136.1
gene_biotype: protein_coding
description:
  Hydrogenase assembly chaperone hypC/hupF; KEGG: bja:bsl6938 hydrogenase expression/formation protein; TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC).


ensembl_gene_id: Rpdx1_0497
symbol: ADU42137.1
gene_biotype: protein_coding
description:
  PFAM: hydrogenase-1 expression HyaE; KEGG: bra:BRADO1689 hydrogenase expression/formation protein HupG; Belongs to the HupG/HyaE family.


ensembl_gene_id: Rpdx1_0498
symbol: ADU42138.1
gene_biotype: protein_coding
description:
  PFAM: HupH hydrogenase expression protein; KEGG: bra:BRADO1690 hydrogenase expression/formation protein HupH.


ensembl_gene_id: Rpdx1_0499
symbol: ADU42139.1
gene_biotype: protein_coding
description:
  PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: azo:azo3796 rubredoxin protein; Belongs to the rubredoxin family.


ensembl_gene_id: Rpdx1_0502
symbol: hypA
gene_biotype: protein_coding
description:
  Hydrogenase nickel insertion protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.


ensembl_gene_id: Rpdx1_0503
symbol: ADU42143.1
gene_biotype: protein_coding
description:
  KEGG: msl:Msil_2744 hydrogenase accessory protein HypB; TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K.


ensembl_gene_id: Rpdx1_0504
symbol: ADU42144.1
gene_biotype: protein_coding
description:
  (NiFe) hydrogenase maturation protein HypF; Involved in the maturation of [NiFe] hydrogenases. Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases. HypF functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide.


ensembl_gene_id: Rpdx1_0505
symbol: ADU42145.1
gene_biotype: protein_coding
description:
  Hydrogenase assembly chaperone hypC/hupF; KEGG: bja:bsl6929 hydrogenase expression/formation protein; TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC).


ensembl_gene_id: Rpdx1_0506
symbol: ADU42146.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll6928 HypD' protein; TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; Belongs to the HypD family.


ensembl_gene_id: Rpdx1_0507
symbol: ADU42147.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_2011 hydrogenase maturation; TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein domain protein; AIR synthase related protein.


ensembl_gene_id: Rpdx1_0508
symbol: ADU42148.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO1701 two component sigma-54-dependent hydrogenase fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase.


ensembl_gene_id: Rpdx1_0509
symbol: ADU42149.1
gene_biotype: protein_coding
description:
  PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; KEGG: bja:bll6924 two-component hybrid sensor and regulator; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase A domain protein.


ensembl_gene_id: Rpdx1_0511
symbol: cheB
gene_biotype: protein_coding
description:
  Response regulator receiver modulated CheB methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.


ensembl_gene_id: Rpdx1_0512
symbol: ADU42152.1
gene_biotype: protein_coding
description:
  MCP methyltransferase, CheR-type; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.


ensembl_gene_id: Rpdx1_0513
symbol: ADU42153.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr2347 putative sensory transducer protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.


ensembl_gene_id: Rpdx1_0514
symbol: ADU42154.1
gene_biotype: protein_coding
description:
  CheW protein; KEGG: bbt:BBta_7835 chemotaxis protein CheW; PFAM: CheW domain protein; SMART: CheW domain protein.


ensembl_gene_id: Rpdx1_0516
symbol: ADU42156.1
gene_biotype: protein_coding
description:
  CheA signal transduction histidine kinase; KEGG: bbt:BBta_6737 chemotaxis protein CheA; PFAM: ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; CheW domain protein; SMART: CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein.


ensembl_gene_id: Rpdx1_0517
symbol: ADU42157.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr2342 chemotaxis two-component response regulator; PFAM: response regulator receiver; SMART: response regulator receiver.


ensembl_gene_id: Rpdx1_0519
symbol: ADU42159.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll2340 two-component response regulator; PFAM: metal-dependent phosphohydrolase HD sub domain; response regulator receiver; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region.


ensembl_gene_id: Rpdx1_0521
symbol: ADU42161.1
gene_biotype: protein_coding
description:
  KEGG: pla:Plav_0564 cytochrome c oxidase subunit I type; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.


ensembl_gene_id: Rpdx1_0522
symbol: ADU42162.1
gene_biotype: protein_coding
description:
  KEGG: nwi:Nwi_2313 cytochrome c oxidase, subunit II; TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II.


ensembl_gene_id: Rpdx1_0525
symbol: ADU42165.1
gene_biotype: protein_coding
description:
  PFAM: Cytochrome c oxidase caa3-type, assembly factor CtaG-related; KEGG: nwi:Nwi_2311 hypothetical protein.


ensembl_gene_id: Rpdx1_0527
symbol: ADU42167.1
gene_biotype: protein_coding
description:
  Cobalt chelatase, pCobT subunit; SMART: von Willebrand factor type A; TIGRFAM: cobalt chelatase, pCobT subunit; KEGG: bbt:BBta_7564 aerobic cobaltochelatase subunit CobT; PFAM: Cobalt chelatase CobT subunit.


ensembl_gene_id: Rpdx1_0529
symbol: ADU42169.1
gene_biotype: protein_coding
description:
  TIGRFAM: cobalt chelatase, pCobS small subunit; KEGG: oca:OCAR_4070 cobaltochelatase, CobS subunit; PFAM: ATPase associated with various cellular activities AAA_5.


ensembl_gene_id: Rpdx1_0531
symbol: ADU42171.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_0496 heat shock protein DnaJ-like; PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein.


ensembl_gene_id: Rpdx1_0533
symbol: ADU42173.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: bbt:BBta_7571 CBS domain-containing protein.


ensembl_gene_id: Rpdx1_0534
symbol: aroB
gene_biotype: protein_coding
description:
  3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).


ensembl_gene_id: Rpdx1_0535
symbol: aroK
gene_biotype: protein_coding
description:
  Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.


ensembl_gene_id: Rpdx1_0537
symbol: xerD
gene_biotype: protein_coding
description:
  Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: Rpdx1_0538
symbol: ADU42178.1
gene_biotype: protein_coding
description:
  PFAM: transcriptional regulator PadR family protein; KEGG: acr:Acry_2218 PadR-like family transcriptional regulator.


ensembl_gene_id: Rpdx1_0539
symbol: accA
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.


ensembl_gene_id: Rpdx1_0540
symbol: ADU42180.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO0605 putative exported protein; putative transcriptional regulatory protein at C-terminal.


ensembl_gene_id: Rpdx1_0541
symbol: secA
gene_biotype: protein_coding
description:
  Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family.


ensembl_gene_id: Rpdx1_0543
symbol: mutS
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.


ensembl_gene_id: Rpdx1_0544
symbol: ADU42184.1
gene_biotype: protein_coding
description:
  TIGRFAM: beta-ketoadipyl CoA thiolase; acetyl-CoA acetyltransferase; KEGG: bja:blr0925 beta-ketoadipyl CoA thiolase; PFAM: Thiolase-like; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Rpdx1_0545
symbol: ADU42185.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_7638 EmrB/QacA family drug resistance transporter; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1.


ensembl_gene_id: Rpdx1_0547
symbol: ADU42187.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; KEGG: bja:bll0933 transcriptional regulatory protein; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.


ensembl_gene_id: Rpdx1_0548
symbol: fur-3
gene_biotype: protein_coding
description:
  Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: nha:Nham_0618 ferric uptake regulator family protein; Belongs to the Fur family.


ensembl_gene_id: Rpdx1_0550
symbol: ispG
gene_biotype: protein_coding
description:
  1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.


ensembl_gene_id: Rpdx1_0552
symbol: ADU42192.1
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: met:M446_1827 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein.


ensembl_gene_id: Rpdx1_0554
symbol: ADU42194.1
gene_biotype: protein_coding
description:
  PFAM: Polyprenyl synthetase; KEGG: bja:bll0946 geranyltranstransferase; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: Rpdx1_0555
symbol: mtgA
gene_biotype: protein_coding
description:
  Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.


ensembl_gene_id: Rpdx1_0556
symbol: rpmF
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO0557 50S ribosomal protein L32; TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; Belongs to the bacterial ribosomal protein bL32 family.


ensembl_gene_id: Rpdx1_0559
symbol: ADU42199.1
gene_biotype: protein_coding
description:
  Diguanylate phosphodiesterase; KEGG: bja:blr0951 hypothetical protein; PFAM: EAL domain protein; SMART: EAL domain protein.


ensembl_gene_id: Rpdx1_0560
symbol: ADU42200.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_7615 putative polyhydroxyalkanoate synthesis repressor PhaR-like protein; TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHA accumulation regulator DNA-binding protein; PHB accumulation regulatory domain protein.


ensembl_gene_id: Rpdx1_0561
symbol: ADU42201.1
gene_biotype: protein_coding
description:
  TIGRFAM: acetyl-CoA acetyltransferase; KEGG: bja:bll0226 acetyl-CoA acetyltransferase; PFAM: Thiolase-like; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Rpdx1_0562
symbol: ADU42202.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll0225 acetoacetyl CoA reductase; TIGRFAM: acetoacetyl-CoA reductase; PFAM: short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Rpdx1_0565
symbol: ADU42205.1
gene_biotype: protein_coding
description:
  TIGRFAM: ATP-dependent helicase HrpB; PFAM: Helicase ATP-dependent domain protein; helicase-associated domain protein; helicase domain protein; KEGG: bbt:BBta_7352 ATP-dependent helicase; SMART: helicase domain protein; DEAD-like helicase.


ensembl_gene_id: Rpdx1_0571
symbol: ADU42210.1
gene_biotype: protein_coding
description:
  Manually curated; TIGRFAM: P-type conjugative transfer ATPase TrbB; KEGG: bbt:BBta_7741 conjugal transfer protein TrbB; PFAM: type II secretion system protein E.


ensembl_gene_id: Rpdx1_0574
symbol: ADU42213.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_1503 conjugal transfer ATPase TrbE; PFAM: CagE, TrbE, VirB component of type IV transporter system, conserved region; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_0575
symbol: ADU42214.1
gene_biotype: protein_coding
description:
  TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: bbt:BBta_3368 conjugal transfer protein TrbJ.


ensembl_gene_id: Rpdx1_0576
symbol: ADU42215.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_1505 conjugal transfer protein TrbL; TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein.


ensembl_gene_id: Rpdx1_0578
symbol: ADU42217.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr1619 conjugal transfer protein; TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX.


ensembl_gene_id: Rpdx1_0581
symbol: ADU42220.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bbt:BBta_1510 LysR family transcriptional regulator.


ensembl_gene_id: Rpdx1_0583
symbol: ADU42222.1
gene_biotype: protein_coding
description:
  Manually curated; PFAM: Autoinducer-binding domain protein; regulatory protein LuxR; KEGG: mlo:mlr6102 transcriptional regulator; SMART: regulatory protein LuxR.


ensembl_gene_id: Rpdx1_0584
symbol: ADU42223.1
gene_biotype: protein_coding
description:
  PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: cti:RALTA_B1332 FAD flavoprotein oxidoreductase.


ensembl_gene_id: Rpdx1_0586
symbol: ADU42225.1
gene_biotype: protein_coding
description:
  PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bxe:Bxe_A1310 alpha-methylacyl-CoA racemase; Belongs to the CoA-transferase III family.


ensembl_gene_id: Rpdx1_0588
symbol: ADU42226.1
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: vei:Veis_1879 extracellular solute-binding protein.


ensembl_gene_id: Rpdx1_0589
symbol: ADU42227.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_1880 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Rpdx1_0590
symbol: ADU42228.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_1881 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Rpdx1_0591
symbol: ADU42229.1
gene_biotype: protein_coding
description:
  GntR domain protein; KEGG: oca:OCAR_5301 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.


ensembl_gene_id: Rpdx1_0594
symbol: ADU42232.1
gene_biotype: protein_coding
description:
  PFAM: Aldehyde Dehydrogenase; KEGG: oca:OCAR_7071 succinate-semialdehyde dehydrogenase [NADP+] (ssdh).


ensembl_gene_id: Rpdx1_0598
symbol: ADU42236.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: mno:Mnod_0680 protein of unknown function DUF224 cysteine-rich region domain protein.


ensembl_gene_id: Rpdx1_0599
symbol: ADU42237.1
gene_biotype: protein_coding
description:
  TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: rme:Rmet_4580 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Rpdx1_0600
symbol: ADU42238.1
gene_biotype: protein_coding
description:
  TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: reh:H16_B0717 ABC transporter ATPase; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Rpdx1_0601
symbol: ADU42239.1
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: rme:Rmet_4578 extracellular solute-binding protein.


ensembl_gene_id: Rpdx1_0602
symbol: ADU42240.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reh:H16_B0719 ABC transporter permease.


ensembl_gene_id: Rpdx1_0603
symbol: ADU42241.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reh:H16_B0720 ABC transporter permease.


ensembl_gene_id: Rpdx1_0605
symbol: ADU42243.1
gene_biotype: protein_coding
description:
  PFAM: Glutathione S-transferase domain; KEGG: bam:Bamb_2266 glutathione S-transferase domain-containing protein; Belongs to the GST superfamily.


ensembl_gene_id: Rpdx1_0606
symbol: ADU42244.1
gene_biotype: protein_coding
description:
  Rieske (2Fe-2S) iron-sulfur domain; KEGG: bbr:BB0279 ferredoxin; manually curated; PFAM: Rieske [2Fe-2S] iron-sulphur domain.


ensembl_gene_id: Rpdx1_0607
symbol: ADU42245.1
gene_biotype: protein_coding
description:
  PFAM: Aromatic-ring-hydroxylating dioxygenase, alpha subunit-like; Rieske [2Fe-2S] iron-sulphur domain; KEGG: nar:Saro_1680 ring hydroxylating dioxygenase, alpha subunit.


ensembl_gene_id: Rpdx1_0608
symbol: ADU42246.1
gene_biotype: protein_coding
description:
  PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit; KEGG: nar:Saro_1681 aromatic-ring-hydroxylating dioxygenase, beta subunit.


ensembl_gene_id: Rpdx1_0609
symbol: ADU42247.1
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mlo:mll9218 putative ferredoxin reductase.


ensembl_gene_id: Rpdx1_0614
symbol: ADU42252.1
gene_biotype: protein_coding
description:
  Manually curated; PFAM: helix-turn-helix domain protein; KEGG: bac:BamMC406_6747 XRE family transcriptional regulator; SMART: helix-turn-helix domain protein.


ensembl_gene_id: Rpdx1_0616
symbol: ADU42254.1
gene_biotype: protein_coding
description:
  PFAM: integrase family protein; KEGG: mlo:mll6432 symbiosis island integrase; Belongs to the 'phage' integrase family.


ensembl_gene_id: Rpdx1_0618
symbol: ADU42256.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll6988 hypothetical protein; PFAM: histidine kinase dimerisation/phosphoacceptor; GAF domain protein; ATP-binding region ATPase domain protein; SMART: GAF domain protein; ATP-binding region ATPase domain protein.


ensembl_gene_id: Rpdx1_0619
symbol: ADU42257.1
gene_biotype: protein_coding
description:
  KEGG: mlo:mll9592 response regulator; PFAM: response regulator receiver; SMART: response regulator receiver.


ensembl_gene_id: Rpdx1_0621
symbol: ADU42259.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll1341 hypothetical protein; TIGRFAM: membrane protein AbrB duplication; PFAM: putative ammonia monooxygenase.


ensembl_gene_id: Rpdx1_0629
symbol: ADU42267.1
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: rru:Rru_A0722 RNA polymerase sigma factor RpoE; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Rpdx1_0632
symbol: ADU42270.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mrd:Mrad2831_3013 LysR family transcriptional regulator.


ensembl_gene_id: Rpdx1_0633
symbol: ADU42271.1
gene_biotype: protein_coding
description:
  PFAM: sodium:dicarboxylate symporter; KEGG: mrd:Mrad2831_3012 C4-dicarboxylate transporter DctA; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.


ensembl_gene_id: Rpdx1_0634
symbol: ADU42272.1
gene_biotype: protein_coding
description:
  Allantoin catabolism protein; KEGG: mrd:Mrad2831_3011 hypothetical protein; TIGRFAM: allantoin catabolism protein; PFAM: protein of unknown function DUF861 cupin_3; Cupin 2 conserved barrel domain protein.


ensembl_gene_id: Rpdx1_0635
symbol: allA
gene_biotype: protein_coding
description:
  Ureidoglycolate hydrolase; Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source.


ensembl_gene_id: Rpdx1_0637
symbol: ADU42275.1
gene_biotype: protein_coding
description:
  HNH endonuclease; KEGG: bja:bll1367 hypothetical protein; PFAM: HNH endonuclease; SMART: HNH nuclease.


ensembl_gene_id: Rpdx1_0638
symbol: ADU42276.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll4682 cysteine synthase; TIGRFAM: cysteine synthase A; cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; Belongs to the cysteine synthase/cystathionine beta- synthase family.


ensembl_gene_id: Rpdx1_0639
symbol: purC
gene_biotype: protein_coding
description:
  TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; KEGG: bja:bll0812 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase.


ensembl_gene_id: Rpdx1_0642
symbol: ADU42280.1
gene_biotype: protein_coding
description:
  PFAM: PAS fold-4 domain protein; KEGG: sma:SAV_698 magnesium or manganese-dependent protein phosphatase.


ensembl_gene_id: Rpdx1_0646
symbol: ADU42284.1
gene_biotype: protein_coding
description:
  TIGRFAM: esterase, PHB depolymerase family; KEGG: bja:blr0899 poly(3-hydroxyalkanoate) depolymerase.


ensembl_gene_id: Rpdx1_0648
symbol: ADU42286.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; KEGG: bja:blr7666 transcriptional regulatory protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Rpdx1_0650
symbol: ADU42288.1
gene_biotype: protein_coding
description:
  SMART: von Willebrand factor type A; KEGG: hch:HCH_00942 von Willebrand factor type A domain-containing protein.


ensembl_gene_id: Rpdx1_0651
symbol: ADU42289.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF1052; KEGG: nha:Nham_0232 hypothetical protein; manually curated; PFAM: protein of unknown function DUF1052.


ensembl_gene_id: Rpdx1_0652
symbol: ADU42290.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll0904 two-component response regulator; PFAM: response regulator receiver; SMART: response regulator receiver.


ensembl_gene_id: Rpdx1_0653
symbol: ADU42291.1
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; KEGG: nwi:Nwi_0110 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.


ensembl_gene_id: Rpdx1_0654
symbol: ADU42292.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr0906 nodulation ATP-binding protein I; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_0656
symbol: ADU42294.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr0908 hypothetical protein; TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein.


ensembl_gene_id: Rpdx1_0657
symbol: ADU42295.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF45; KEGG: bja:blr0909 hypothetical protein; manually curated; PFAM: protein of unknown function DUF45.


ensembl_gene_id: Rpdx1_0658
symbol: ADU42296.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_0227 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase.


ensembl_gene_id: Rpdx1_0661
symbol: ADU42299.1
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: bbt:BBta_7651 putative branched-chain amino acid ABC transporter, periplasmic binding protein.


ensembl_gene_id: Rpdx1_0664
symbol: ADU42302.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO3478 sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver.


ensembl_gene_id: Rpdx1_0665
symbol: ADU42303.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO0672 transcriptional accessory protein; PFAM: Tex-like protein-like; RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold.


ensembl_gene_id: Rpdx1_0667
symbol: ADU42304.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_1938 chromate transporter; TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter.


ensembl_gene_id: Rpdx1_0668
symbol: ADU42305.1
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: alv:Alvin_1021 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Rpdx1_0671
symbol: ADU42308.1
gene_biotype: protein_coding
description:
  TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; KEGG: afr:AFE_0524 carboxy-terminal peptidase; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; Belongs to the peptidase S41A family.


ensembl_gene_id: Rpdx1_0672
symbol: glnD
gene_biotype: protein_coding
description:
  UTP-GlnB uridylyltransferase, GlnD; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen fixation and metabolism.


ensembl_gene_id: Rpdx1_0673
symbol: argJ
gene_biotype: protein_coding
description:
  Arginine biosynthesis bifunctional protein ArgJ; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.


ensembl_gene_id: Rpdx1_0678
symbol: ADU42315.1
gene_biotype: protein_coding
description:
  Glutaredoxin 3; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.


ensembl_gene_id: Rpdx1_0679
symbol: ADU42316.1
gene_biotype: protein_coding
description:
  PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bbt:BBta_7596 putative nitrilase.


ensembl_gene_id: Rpdx1_0684
symbol: ubiG
gene_biotype: protein_coding
description:
  Ubiquinone biosynthesis O-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.


ensembl_gene_id: Rpdx1_0685
symbol: ADU42322.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO0574 aspartate kinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; Belongs to the aspartokinase family.


ensembl_gene_id: Rpdx1_0686
symbol: ADU42323.1
gene_biotype: protein_coding
description:
  PTSINtr with GAF domain, PtsP; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; GAF domain protein; PEP-utilising protein mobile region; KEGG: bja:blr0217 phosphoenolpyruvate-protein phosphotransferase; SMART: GAF domain protein; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: Rpdx1_0687
symbol: prfA
gene_biotype: protein_coding
description:
  Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.


ensembl_gene_id: Rpdx1_0688
symbol: prmC
gene_biotype: protein_coding
description:
  protein-(glutamine-N5) methyltransferase, release factor-specific; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.


ensembl_gene_id: Rpdx1_0691
symbol: gloB
gene_biotype: protein_coding
description:
  Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.


ensembl_gene_id: Rpdx1_0693
symbol: ADU42330.1
gene_biotype: protein_coding
description:
  PFAM: PfkB domain protein; KEGG: nha:Nham_0460 PfkB; Belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: Rpdx1_0694
symbol: ADU42331.1
gene_biotype: protein_coding
description:
  NAD(+) diphosphatase; KEGG: bja:blr8123 MutT/NUDIX family protein; PFAM: NUDIX hydrolase; Zinc ribbon NADH pyrophosphatase; NADH pyrophosphatase-like.


ensembl_gene_id: Rpdx1_0696
symbol: dnaX
gene_biotype: protein_coding
description:
  DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.


ensembl_gene_id: Rpdx1_0697
symbol: ADU42334.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.


ensembl_gene_id: Rpdx1_0698
symbol: recR
gene_biotype: protein_coding
description:
  Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.


ensembl_gene_id: Rpdx1_0702
symbol: def
gene_biotype: protein_coding
description:
  Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.


ensembl_gene_id: Rpdx1_0703
symbol: fmt
gene_biotype: protein_coding
description:
  methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.


ensembl_gene_id: Rpdx1_0704
symbol: truA
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.


ensembl_gene_id: Rpdx1_0705
symbol: dapE
gene_biotype: protein_coding
description:
  Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.


ensembl_gene_id: Rpdx1_0706
symbol: dapD
gene_biotype: protein_coding
description:
  TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; KEGG: nha:Nham_3698 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family.


ensembl_gene_id: Rpdx1_0707
symbol: ADU42344.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_3699 pyrimidine 5-nucleotidase; TIGRFAM: pyrimidine 5'-nucleotidase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase.


ensembl_gene_id: Rpdx1_0708
symbol: ADU42345.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF1036; KEGG: bja:blr8102 hypothetical protein; manually curated; PFAM: protein of unknown function DUF1036; Peptidoglycan-binding domain 1 protein.


ensembl_gene_id: Rpdx1_0709
symbol: argB
gene_biotype: protein_coding
description:
  Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.


ensembl_gene_id: Rpdx1_0711
symbol: engB
gene_biotype: protein_coding
description:
  Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.


ensembl_gene_id: Rpdx1_0712
symbol: yidC
gene_biotype: protein_coding
description:
  Membrane protein insertase, YidC/Oxa1 family; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.


ensembl_gene_id: Rpdx1_0713
symbol: rnpA
gene_biotype: protein_coding
description:
  Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.


ensembl_gene_id: Rpdx1_0715
symbol: ADU42351.1
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; KEGG: nha:Nham_3706 histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein.


ensembl_gene_id: Rpdx1_0723
symbol: ADU42358.1
gene_biotype: protein_coding
description:
  KEGG: zmo:ZMO1944 transcriptional regulator, GntR family with aminotransferase domain; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH.


ensembl_gene_id: Rpdx1_0724
symbol: ADU42359.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rsp:RSP_1915 LysR family transcriptional regulator.


ensembl_gene_id: Rpdx1_0725
symbol: ADU42360.1
gene_biotype: protein_coding
description:
  PFAM: Cupin 2 conserved barrel domain protein; KEGG: rsh:Rsph17029_0568 cupin 2 domain-containing protein.


ensembl_gene_id: Rpdx1_0729
symbol: ADU42364.1
gene_biotype: protein_coding
description:
  KEGG: acp:A2cp1_2977 glutamate synthase (NADPH), homotetrameric; TIGRFAM: glutamate synthase (NADPH), homotetrameric; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; oxidoreductase FAD/NAD(P)-binding domain protein; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain.


ensembl_gene_id: Rpdx1_0730
symbol: ADU42365.1
gene_biotype: protein_coding
description:
  Radical SAM domain protein; KEGG: bja:blr7973 hypothetical protein; PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: Rpdx1_0732
symbol: ADU42367.1
gene_biotype: protein_coding
description:
  PFAM: secretion protein HlyD family protein; KEGG: mpo:Mpop_0535 secretion protein HlyD family protein.


ensembl_gene_id: Rpdx1_0733
symbol: ADU42368.1
gene_biotype: protein_coding
description:
  KEGG: mpo:Mpop_0536 ABC transporter related; PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_0737
symbol: ADU42372.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, IclR family; KEGG: bja:blr5288 transcriptional regulatory protein; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR.


ensembl_gene_id: Rpdx1_0739
symbol: ADU42374.1
gene_biotype: protein_coding
description:
  PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: bja:blr1229 hypothetical protein.


ensembl_gene_id: Rpdx1_0740
symbol: phnN
gene_biotype: protein_coding
description:
  Phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP).


ensembl_gene_id: Rpdx1_0741
symbol: ADU42376.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr1227 phosphonate metabolism protein; TIGRFAM: phosphonate metabolism protein PhnM; PFAM: amidohydrolase.


ensembl_gene_id: Rpdx1_0742
symbol: ADU42377.1
gene_biotype: protein_coding
description:
  TIGRFAM: phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter related; KEGG: bja:blr1226 phosphonate uptake transporter ATP-binding protein; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_0743
symbol: ADU42378.1
gene_biotype: protein_coding
description:
  TIGRFAM: phosphonate C-P lyase system protein PhnK; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: bbt:BBta_5844 phosphonate C-P lyase system protein PhnK; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_0744
symbol: ADU42379.1
gene_biotype: protein_coding
description:
  Phosphonate metabolism PhnJ; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.


ensembl_gene_id: Rpdx1_0746
symbol: ADU42381.1
gene_biotype: protein_coding
description:
  Phosphonate C-P lyase system protein PhnH; KEGG: bja:blr1222 carbon-phosphorus lyase complex subunit; TIGRFAM: phosphonate C-P lyase system protein PhnH; PFAM: phosphonate metabolism.


ensembl_gene_id: Rpdx1_0747
symbol: ADU42382.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr1221 phosphonate metabolism protein; TIGRFAM: phosphonate C-P lyase system protein PhnG; PFAM: phosphonate metabolism PhnG.


ensembl_gene_id: Rpdx1_0748
symbol: ADU42383.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; TIGRFAM: phosphonates metabolism transcriptional regulator PhnF; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; KEGG: bbt:BBta_5849 GntR family transcriptional regulator; SMART: regulatory protein GntR HTH.


ensembl_gene_id: Rpdx1_0749
symbol: ADU42384.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO5363 putative PhnE protein, phosphonate ABC transporter, putative membrane protein; TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Rpdx1_0750
symbol: ADU42385.1
gene_biotype: protein_coding
description:
  KEGG: xau:Xaut_1320 phosphonate ABC transporter, inner membrane subunit; TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Rpdx1_0751
symbol: ADU42386.1
gene_biotype: protein_coding
description:
  TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate binding protein; phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: xau:Xaut_1321 phosphonate ABC transporter, periplasmic phosphonate-binding protein.


ensembl_gene_id: Rpdx1_0752
symbol: phnC
gene_biotype: protein_coding
description:
  Phosphonate ABC transporter, ATPase subunit; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.


ensembl_gene_id: Rpdx1_0753
symbol: ADU42388.1
gene_biotype: protein_coding
description:
  TIGRFAM: phosphonate metabolim protein, transferase hexapeptide repeat family; KEGG: bbt:BBta_5859 putative acetyltransferase.


ensembl_gene_id: Rpdx1_0754
symbol: ADU42389.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr7949 phosphonate metabolism protein; TIGRFAM: phosphonate metabolism protein PhnM; PFAM: amidohydrolase.


ensembl_gene_id: Rpdx1_0755
symbol: ADU42390.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr7950 hypothetical protein; TIGRFAM: phosphonate metabolism protein; PFAM: protein of unknown function DUF1045.


ensembl_gene_id: Rpdx1_0759
symbol: ADU42394.1
gene_biotype: protein_coding
description:
  PFAM: CutA1 divalent ion tolerance protein; KEGG: oca:OCAR_6913 CutA1 divalent ion tolerance protein.


ensembl_gene_id: Rpdx1_0760
symbol: ADU42395.1
gene_biotype: protein_coding
description:
  Regulatory protein, FmdB family; KEGG: aba:Acid345_1009 hypothetical protein; TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB.


ensembl_gene_id: Rpdx1_0763
symbol: ADU42398.1
gene_biotype: protein_coding
description:
  TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; KEGG: bbt:BBta_3155 cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase.


ensembl_gene_id: Rpdx1_0764
symbol: cobT
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).


ensembl_gene_id: Rpdx1_0766
symbol: ADU42401.1
gene_biotype: protein_coding
description:
  Adenosylcobinamide-phosphate guanylyltransferase; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate.


ensembl_gene_id: Rpdx1_0767
symbol: ADU42402.1
gene_biotype: protein_coding
description:
  KEGG: mno:Mnod_2148 cobalamin biosynthesis protein CobW; TIGRFAM: cobalamin biosynthesis protein CobW; PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein.


ensembl_gene_id: Rpdx1_0768
symbol: ADU42403.1
gene_biotype: protein_coding
description:
  TIGRFAM: cobaltochelatase, CobN subunit; KEGG: mag:amb4427 cobaltochelatase subunit CobN; PFAM: CobN/magnesium chelatase.


ensembl_gene_id: Rpdx1_0769
symbol: ADU42404.1
gene_biotype: protein_coding
description:
  cob(I)alamin adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids.


ensembl_gene_id: Rpdx1_0770
symbol: cobQ
gene_biotype: protein_coding
description:
  Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.


ensembl_gene_id: Rpdx1_0771
symbol: cobD
gene_biotype: protein_coding
description:
  Cobalamin biosynthesis protein CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.


ensembl_gene_id: Rpdx1_0773
symbol: ADU42408.1
gene_biotype: protein_coding
description:
  KEGG: rce:RC1_3874 threonine-phosphate decarboxylase; TIGRFAM: L-threonine-O-3-phosphate decarboxylase; PFAM: aminotransferase class I and II.


ensembl_gene_id: Rpdx1_0774
symbol: ADU42409.1
gene_biotype: protein_coding
description:
  KEGG: nwi:Nwi_3049 ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_0775
symbol: ADU42410.1
gene_biotype: protein_coding
description:
  PFAM: transport system permease protein; KEGG: nha:Nham_3730 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: Rpdx1_0776
symbol: ADU42411.1
gene_biotype: protein_coding
description:
  KEGG: bmj:BMULJ_01659 high-affinity nickel-transport protein; TIGRFAM: high-affinity nickel-transporter; PFAM: high-affinity nickel-transporter; Belongs to the NiCoT transporter (TC 2.A.52) family.


ensembl_gene_id: Rpdx1_0780
symbol: ADU42414.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bbt:BBta_3092 LysR family transcriptional regulator.


ensembl_gene_id: Rpdx1_0781
symbol: ADU42415.1
gene_biotype: protein_coding
description:
  PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: bja:bll3138 formate dehydrogenase subunit gamma.


ensembl_gene_id: Rpdx1_0782
symbol: ADU42416.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll3137 NADH dehydrogenase I chain F; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding.


ensembl_gene_id: Rpdx1_0783
symbol: ADU42417.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll3136 formate dehydrogenase alpha subunit; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region.


ensembl_gene_id: Rpdx1_0784
symbol: fdhD
gene_biotype: protein_coding
description:
  Formate dehydrogenase family accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.


ensembl_gene_id: Rpdx1_0790
symbol: ADU42424.1
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; KEGG: dal:Dalk_4842 acyl-CoA dehydrogenase domain protein.


ensembl_gene_id: Rpdx1_0791
symbol: ADU42425.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr6138 hypothetical protein; PFAM: ATPase associated with various cellular activities AAA_3; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_0793
symbol: ADU42427.1
gene_biotype: protein_coding
description:
  PFAM: AMP-dependent synthetase and ligase; KEGG: bbt:BBta_0667 putative O-succinylbenzoate--CoA ligase.


ensembl_gene_id: Rpdx1_0795
symbol: ADU42429.1
gene_biotype: protein_coding
description:
  TIGRFAM: decaheme-associated outer membrane protein, MtrB/PioB family; KEGG: gem:GM21_0398 hypothetical protein.


ensembl_gene_id: Rpdx1_0796
symbol: ADU42430.1
gene_biotype: protein_coding
description:
  TIGRFAM: decaheme c-type cytochrome, DmsE family; cytochrome C family protein; KEGG: nhl:Nhal_1192 cytochrome c family protein.


ensembl_gene_id: Rpdx1_0797
symbol: cysA
gene_biotype: protein_coding
description:
  Sulfate ABC transporter, ATPase subunit; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.


ensembl_gene_id: Rpdx1_0798
symbol: ADU42432.1
gene_biotype: protein_coding
description:
  KEGG: nwi:Nwi_2758 sulfate ABC transporter, permease protein CysW; TIGRFAM: sulfate ABC transporter, inner membrane subunit CysW; sulfate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Rpdx1_0799
symbol: ADU42433.1
gene_biotype: protein_coding
description:
  Sulfate ABC transporter, inner membrane subunit CysT; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: Rpdx1_0800
symbol: ADU42434.1
gene_biotype: protein_coding
description:
  KEGG: oca:OCAR_7386 thiosulfate-binding protein; TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1.


ensembl_gene_id: Rpdx1_0802
symbol: ADU42436.1
gene_biotype: protein_coding
description:
  PFAM: phosphoadenosine phosphosulfate reductase; KEGG: bbt:BBta_6983 sulfate adenylyltransferase subunit 2.


ensembl_gene_id: Rpdx1_0804
symbol: ADU42438.1
gene_biotype: protein_coding
description:
  TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: bja:bll7916 ABC transporter ATP-binding protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Rpdx1_0805
symbol: ADU42439.1
gene_biotype: protein_coding
description:
  PFAM: Amidase; KEGG: bja:bll7917 putative glutamyl-tRNA(Gln) amidotransferase; Belongs to the amidase family.


ensembl_gene_id: Rpdx1_0807
symbol: ADU42441.1
gene_biotype: protein_coding
description:
  TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: bja:bll7918 ABC transporter ATP-binding protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Rpdx1_0808
symbol: ADU42442.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_1552 ABC transporter permease protein.


ensembl_gene_id: Rpdx1_0809
symbol: ADU42443.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:bll7920 ABC transporter permease protein.


ensembl_gene_id: Rpdx1_0810
symbol: ADU42444.1
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: bbt:BBta_7150 putative oligopeptide ABC transporter (substrate binding protein).


ensembl_gene_id: Rpdx1_0811
symbol: ADU42445.1
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: bja:blr7922 ABC transporter substrate-binding protein.


ensembl_gene_id: Rpdx1_0813
symbol: ADU42447.1
gene_biotype: protein_coding
description:
  PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: neu:NE1205 TonB-dependent receptor protein.


ensembl_gene_id: Rpdx1_0814
symbol: ADU42448.1
gene_biotype: protein_coding
description:
  KEGG: mdi:METDI0368 putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp.


ensembl_gene_id: Rpdx1_0816
symbol: ADU42450.1
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; KEGG: met:M446_6787 diguanylate cyclase/phosphodiesterase; SMART: GGDEF domain containing protein.


ensembl_gene_id: Rpdx1_0823
symbol: ADU42456.1
gene_biotype: protein_coding
description:
  KEGG: pth:PTH_0723 hypothetical protein; manually curated; PFAM: stem cell self-renewal protein Piwi domain protein.


ensembl_gene_id: Rpdx1_0826
symbol: ADU42458.1
gene_biotype: protein_coding
description:
  Helix-turn-helix domain protein; KEGG: bac:BamMC406_2103 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.


ensembl_gene_id: Rpdx1_0833
symbol: ADU42465.1
gene_biotype: protein_coding
description:
  Helix-turn-helix domain protein; KEGG: bbt:BBta_1485 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.


ensembl_gene_id: Rpdx1_0837
symbol: ADU42469.1
gene_biotype: protein_coding
description:
  Conjugative transfer signal peptidase TraF; KEGG: zmn:Za10_1345 TraF peptidase. serine peptidase MEROPS family S26C; TIGRFAM: conjugative transfer signal peptidase TraF; PFAM: Peptidase S26, conserved region.


ensembl_gene_id: Rpdx1_0843
symbol: ADU42475.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: oca:OCAR_7611 transcriptional regulator, LysR family.


ensembl_gene_id: Rpdx1_0846
symbol: ADU42478.1
gene_biotype: protein_coding
description:
  Manually curated; TIGRFAM: P-type conjugative transfer ATPase TrbB; KEGG: oca:OCAR_7608 P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E.


ensembl_gene_id: Rpdx1_0849
symbol: ADU42481.1
gene_biotype: protein_coding
description:
  KEGG: oca:OCAR_7605 conjugal transfer ATPase TrbE; PFAM: CagE, TrbE, VirB component of type IV transporter system, conserved region; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_0850
symbol: ADU42482.1
gene_biotype: protein_coding
description:
  TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: oca:OCAR_7604 conjugal transfer protein TrbJ.


ensembl_gene_id: Rpdx1_0852
symbol: ADU42484.1
gene_biotype: protein_coding
description:
  KEGG: oca:OCAR_4186 conjugal transfer protein TrbL; TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein.


ensembl_gene_id: Rpdx1_0854
symbol: ADU42486.1
gene_biotype: protein_coding
description:
  KEGG: oca:OCAR_7600 conjugal transfer protein TrbG/VirB9/CagX; TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX.


ensembl_gene_id: Rpdx1_0858
symbol: ADU42490.1
gene_biotype: protein_coding
description:
  KEGG: bid:Bind_3765 helicase domain-containing protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.


ensembl_gene_id: Rpdx1_0863
symbol: ADU42495.1
gene_biotype: protein_coding
description:
  PFAM: integrase family protein; KEGG: bbt:BBta_7820 putative phage integrase; Belongs to the 'phage' integrase family.


ensembl_gene_id: Rpdx1_0864
symbol: ADU42496.1
gene_biotype: protein_coding
description:
  KEGG: sjp:SJA_C1-03600 putative helicase; PFAM: DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicase.


ensembl_gene_id: Rpdx1_0869
symbol: ADU42501.1
gene_biotype: protein_coding
description:
  Helicase domain protein; KEGG: gox:GOX1504 ATP-dependent helicase HepA; PFAM: helicase domain protein; SNF2-related protein; SMART: helicase domain protein; DEAD-like helicase.


ensembl_gene_id: Rpdx1_0870
symbol: ADU42502.1
gene_biotype: protein_coding
description:
  KEGG: gox:GOX1503 ATP-dependent helicase Lhr; PFAM: Protein of unknown function DUF1998; DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.


ensembl_gene_id: Rpdx1_0875
symbol: ADU42505.1
gene_biotype: protein_coding
description:
  PFAM: domain of unknown function DUF1738; KEGG: bbt:BBta_7394 putative ArdC antirestriction protein.


ensembl_gene_id: Rpdx1_0877
symbol: ADU42507.1
gene_biotype: protein_coding
description:
  ParB domain protein nuclease; KEGG: bja:bll0065 putative DNA-binding protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease.


ensembl_gene_id: Rpdx1_0881
symbol: ADU42511.1
gene_biotype: protein_coding
description:
  Regulatory protein ArsR; KEGG: mes:Meso_4060 ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR.


ensembl_gene_id: Rpdx1_0882
symbol: ADU42512.1
gene_biotype: protein_coding
description:
  PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: mkm:Mkms_3597 activator of HSP90 ATPase 1 family protein.


ensembl_gene_id: Rpdx1_0883
symbol: ADU42513.1
gene_biotype: protein_coding
description:
  PFAM: bifunctional deaminase-reductase domain protein; KEGG: ara:Arad_9899 bifunctional deaminase-reductase, C-terminal.


ensembl_gene_id: Rpdx1_0887
symbol: ADU42517.1
gene_biotype: protein_coding
description:
  Helix-turn-helix domain protein; KEGG: gdj:Gdia_2792 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.


ensembl_gene_id: Rpdx1_0896
symbol: ADU42526.1
gene_biotype: protein_coding
description:
  PFAM: Peptidase S26, conserved region; KEGG: xau:Xaut_4011 peptidase S26C conjugative transfer signal peptidase TraF.


ensembl_gene_id: Rpdx1_0900
symbol: ADU42530.1
gene_biotype: protein_coding
description:
  PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: mlo:mll7611 serine/threonine dehydratase.


ensembl_gene_id: Rpdx1_0901
symbol: ADU42531.1
gene_biotype: protein_coding
description:
  PFAM: Cupin 2 conserved barrel domain protein; KEGG: hmo:HM1_0326 conserved hypothetical protein, putative cupin domain protein.


ensembl_gene_id: Rpdx1_0904
symbol: ADU42534.1
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bmj:BMULJ_04885 glyoxalase/bleomycin resistance protein.


ensembl_gene_id: Rpdx1_0905
symbol: ADU42535.1
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: cyn:Cyan7425_0013 major facilitator superfamily MFS_1.


ensembl_gene_id: Rpdx1_0906
symbol: ADU42536.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pag:PLES_30461 transcriptional regulator PtxR.


ensembl_gene_id: Rpdx1_0910
symbol: ADU42540.1
gene_biotype: protein_coding
description:
  PFAM: Epoxide hydrolase domain protein; alpha/beta hydrolase fold; KEGG: gym:GYMC10_3404 epoxide hydrolase domain protein.


ensembl_gene_id: Rpdx1_0914
symbol: ADU42544.1
gene_biotype: protein_coding
description:
  KEGG: xau:Xaut_3004 P-type conjugative transfer ATPase TrbB; TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E.


ensembl_gene_id: Rpdx1_0918
symbol: ADU42548.1
gene_biotype: protein_coding
description:
  TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: mes:Meso_0505 conjugal transfer protein TrbJ.


ensembl_gene_id: Rpdx1_0920
symbol: ADU42550.1
gene_biotype: protein_coding
description:
  KEGG: xau:Xaut_2884 conjugal transfer protein TrbL; TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein.


ensembl_gene_id: Rpdx1_0922
symbol: ADU42552.1
gene_biotype: protein_coding
description:
  KEGG: oca:OCAR_4184 conjugal transfer protein TrbG/VirB9/CagX; TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX.


ensembl_gene_id: Rpdx1_0924
symbol: ADU42554.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF2274; KEGG: bja:bsl8278 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF2274.


ensembl_gene_id: Rpdx1_0925
symbol: ADU42555.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mes:Meso_3862 LysR family transcriptional regulator.


ensembl_gene_id: Rpdx1_0930
symbol: crcB
gene_biotype: protein_coding
description:
  Camphor resistance CrcB protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.


ensembl_gene_id: Rpdx1_0936
symbol: ADU42564.1
gene_biotype: protein_coding
description:
  Gamma-glutamyltransferase; KEGG: bja:bll2229 ACY1 bifunctional acylase; PFAM: gamma-glutamyltranspeptidase.


ensembl_gene_id: Rpdx1_0937
symbol: ADU42565.1
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: bja:blr4813 hypothetical protein; SMART: EAL domain protein; GGDEF domain containing protein.


ensembl_gene_id: Rpdx1_0940
symbol: ADU42568.1
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; KEGG: xau:Xaut_4077 acyl-CoA dehydrogenase domain-containing protein.


ensembl_gene_id: Rpdx1_0943
symbol: ADU42571.1
gene_biotype: protein_coding
description:
  Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; KEGG: nha:Nham_3276 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein.


ensembl_gene_id: Rpdx1_0946
symbol: ADU42574.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr4264 putative adenylate cyclase protein; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase.


ensembl_gene_id: Rpdx1_0947
symbol: htpX
gene_biotype: protein_coding
description:
  PFAM: peptidase M48 Ste24p; KEGG: bja:blr2450 heat shock protein HtpX; Belongs to the peptidase M48B family.


ensembl_gene_id: Rpdx1_0951
symbol: ADU42579.1
gene_biotype: protein_coding
description:
  Nuclease (SNase domain protein); KEGG: bbt:BBta_0545 putative nuclease-like protein; PFAM: nuclease (SNase domain protein); SMART: nuclease (SNase domain protein).


ensembl_gene_id: Rpdx1_0953
symbol: ADU42581.1
gene_biotype: protein_coding
description:
  PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: bra:BRADO6982 putative peptidase; caspase-like.


ensembl_gene_id: Rpdx1_0955
symbol: ADU42583.1
gene_biotype: protein_coding
description:
  Putative phage repressor; PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: nha:Nham_0557 putative phage repressor; Belongs to the peptidase S24 family.


ensembl_gene_id: Rpdx1_0957
symbol: pyrD
gene_biotype: protein_coding
description:
  Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.


ensembl_gene_id: Rpdx1_0960
symbol: ADU42588.1
gene_biotype: protein_coding
description:
  MATE efflux family protein; KEGG: bja:bll1141 DNA-damage-inducible protein F; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE.


ensembl_gene_id: Rpdx1_0962
symbol: ADU42590.1
gene_biotype: protein_coding
description:
  PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; KEGG: bja:bll1144 ATP-dependent DNA ligase.


ensembl_gene_id: Rpdx1_0965
symbol: ADU42593.1
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: bbt:BBta_0801 putative amino-acid ABC transport system, periplasmic binding protein.


ensembl_gene_id: Rpdx1_0966
symbol: ADU42594.1
gene_biotype: protein_coding
description:
  Manually curated; PFAM: DEAD/H associated domain protein; DEAD/DEAH box helicase domain protein; helicase domain protein; KEGG: bbt:BBta_0802 putative ATP dependent DNA helicase; SMART: DEAD-like helicase; helicase domain protein.


ensembl_gene_id: Rpdx1_0968
symbol: ADU42596.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bja:bll1150 transcriptional regulatory protein.


ensembl_gene_id: Rpdx1_0973
symbol: ADU42601.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll1155 hypothetical protein; PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein.


ensembl_gene_id: Rpdx1_0977
symbol: ADU42605.1
gene_biotype: protein_coding
description:
  TIGRFAM: acetyl-CoA acetyltransferase; KEGG: bra:BRADO6724 acetyl-CoA acetyltransferase; PFAM: Thiolase-like; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Rpdx1_0979
symbol: ADU42606.1
gene_biotype: protein_coding
description:
  PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: bbt:BBta_0817 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: Rpdx1_0981
symbol: ADU42608.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dsh:Dshi_2523 putative hydrogen peroxide-inducible genes activator; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Rpdx1_0982
symbol: ADU42609.1
gene_biotype: protein_coding
description:
  Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.


ensembl_gene_id: Rpdx1_0983
symbol: ADU42610.1
gene_biotype: protein_coding
description:
  PFAM: Ferritin Dps family protein; KEGG: pzu:PHZ_p0100 DNA-binding ferritin-like protein (oxidative damage protectant); Belongs to the Dps family.


ensembl_gene_id: Rpdx1_0985
symbol: ADU42612.1
gene_biotype: protein_coding
description:
  Regulatory protein MarR; KEGG: bra:BRADO6719 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.


ensembl_gene_id: Rpdx1_0986
symbol: ADU42613.1
gene_biotype: protein_coding
description:
  Glutamate/cysteine ligase; Catalyzes the synthesis of gamma-glutamylcysteine (gamma-GC). Belongs to the glutamate--cysteine ligase type 2 family. EgtA subfamily.


ensembl_gene_id: Rpdx1_0988
symbol: ADU42615.1
gene_biotype: protein_coding
description:
  TIGRFAM: signal peptidase I; KEGG: nha:Nham_0252 peptidase S26A, signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; Belongs to the peptidase S26 family.


ensembl_gene_id: Rpdx1_0992
symbol: ADU42619.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; KEGG: rso:RS02614 putative transcription regulator protein; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.


ensembl_gene_id: Rpdx1_0993
symbol: ADU42620.1
gene_biotype: protein_coding
description:
  Peroxiredoxin, Ohr subfamily; KEGG: pmy:Pmen_2630 OsmC family protein; TIGRFAM: peroxiredoxin, Ohr subfamily; PFAM: OsmC family protein.


ensembl_gene_id: Rpdx1_0996
symbol: ADU42622.1
gene_biotype: protein_coding
description:
  Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).


ensembl_gene_id: Rpdx1_0997
symbol: ADU42623.1
gene_biotype: protein_coding
description:
  Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.


ensembl_gene_id: Rpdx1_0998
symbol: ctaB
gene_biotype: protein_coding
description:
  Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.


ensembl_gene_id: Rpdx1_1000
symbol: ctaG
gene_biotype: protein_coding
description:
  Cytochrome c oxidase assembly protein CtaG/Cox11; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family.


ensembl_gene_id: Rpdx1_1006
symbol: ADU42632.1
gene_biotype: protein_coding
description:
  TIGRFAM: threonine synthase; KEGG: nha:Nham_0262 threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit.


ensembl_gene_id: Rpdx1_1007
symbol: ADU42633.1
gene_biotype: protein_coding
description:
  Processing peptidase; KEGG: bja:blr1182 mitochondrial processing peptidase-like protein; PFAM: peptidase M16 domain protein.


ensembl_gene_id: Rpdx1_1008
symbol: ADU42634.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr1183 ribosomal-protein-alanine N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase.


ensembl_gene_id: Rpdx1_1010
symbol: atpF
gene_biotype: protein_coding
description:
  H+transporting two-sector ATPase B/B' subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.


ensembl_gene_id: Rpdx1_1012
symbol: atpE
gene_biotype: protein_coding
description:
  H+transporting two-sector ATPase C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: Rpdx1_1013
symbol: atpB
gene_biotype: protein_coding
description:
  ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.


ensembl_gene_id: Rpdx1_1014
symbol: ADU42640.1
gene_biotype: protein_coding
description:
  FoF1 ATP synthase, subunit I; A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex.


ensembl_gene_id: Rpdx1_1019
symbol: ADU42645.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO6680 two-component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver.


ensembl_gene_id: Rpdx1_1020
symbol: ADU42646.1
gene_biotype: protein_coding
description:
  ATP-binding region ATPase domain protein; KEGG: bbt:BBta_0860 putative two-component hybrid sensor histidine kinase and response regulator; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Na+/solute symporter; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver.


ensembl_gene_id: Rpdx1_1021
symbol: ADU42647.1
gene_biotype: protein_coding
description:
  TIGRFAM: 5-aminolevulinic acid synthase; KEGG: bra:BRADO6672 5-aminolevulinate synthase; PFAM: aminotransferase class I and II.


ensembl_gene_id: Rpdx1_1023
symbol: ADU42649.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll1203 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.


ensembl_gene_id: Rpdx1_1024
symbol: ADU42650.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO6669 putative outer-membrane immunogenic protein precursor; putative secreted protein.


ensembl_gene_id: Rpdx1_1027
symbol: ADU42653.1
gene_biotype: protein_coding
description:
  PFAM: periplasmic solute binding protein; KEGG: oca:OCAR_4907 periplasmic chelated iron-binding protein YfeA; Belongs to the bacterial solute-binding protein 9 family.


ensembl_gene_id: Rpdx1_1028
symbol: ADU42654.1
gene_biotype: protein_coding
description:
  PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: bbt:BBta_1342 putative cobalamin synthesis protein/P47K family protein.


ensembl_gene_id: Rpdx1_1033
symbol: ADU42659.1
gene_biotype: protein_coding
description:
  PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: nha:Nham_3421 GreA/GreB family elongation factor.


ensembl_gene_id: Rpdx1_1037
symbol: ADU42663.1
gene_biotype: protein_coding
description:
  PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: oca:OCAR_4918 ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.


ensembl_gene_id: Rpdx1_1041
symbol: ADU42667.1
gene_biotype: protein_coding
description:
  PFAM: high-affinity nickel-transporter; KEGG: bja:bll7754 hypothetical protein; Belongs to the NiCoT transporter (TC 2.A.52) family.


ensembl_gene_id: Rpdx1_1042
symbol: hemH
gene_biotype: protein_coding
description:
  Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.


ensembl_gene_id: Rpdx1_1043
symbol: ADU42669.1
gene_biotype: protein_coding
description:
  Band 7 protein; KEGG: bja:bll7750 hypothetical protein; PFAM: band 7 protein; SMART: band 7 protein.


ensembl_gene_id: Rpdx1_1045
symbol: ADU42671.1
gene_biotype: protein_coding
description:
  KEGG: bpy:Bphyt_0019 transcriptional regulator, AraC family; PFAM: transcription activator effector binding; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Rpdx1_1046
symbol: ADU42672.1
gene_biotype: protein_coding
description:
  TIGRFAM: KpsF/GutQ family protein; KEGG: nha:Nham_3413 KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein; Belongs to the SIS family. GutQ/KpsF subfamily.


ensembl_gene_id: Rpdx1_1049
symbol: ADU42675.1
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bja:bll1500 hypothetical protein; SMART: GGDEF domain containing protein.


ensembl_gene_id: Rpdx1_1050
symbol: ADU42676.1
gene_biotype: protein_coding
description:
  TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; KEGG: bbt:BBta_6959 UDP-glucose pyrophosphorylase; PFAM: Nucleotidyl transferase.


ensembl_gene_id: Rpdx1_1052
symbol: ADU42678.1
gene_biotype: protein_coding
description:
  PFAM: heat shock protein Hsp20; KEGG: nwi:Nwi_2952 heat shock protein HSP20; Belongs to the small heat shock protein (HSP20) family.


ensembl_gene_id: Rpdx1_1054
symbol: ADU42680.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_1138 glutamate synthase (ferredoxin); PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein.


ensembl_gene_id: Rpdx1_1055
symbol: ADU42681.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_1370 glutamate synthase subunit beta; TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Rpdx1_1059
symbol: dapA
gene_biotype: protein_coding
description:
  Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).


ensembl_gene_id: Rpdx1_1060
symbol: ADU42686.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll1498 transglycolase; TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein.


ensembl_gene_id: Rpdx1_1061
symbol: ADU42687.1
gene_biotype: protein_coding
description:
  PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bra:BRADO6219 LysE family amino acid efflux protein.


ensembl_gene_id: Rpdx1_1065
symbol: ADU42691.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr7731 inositol monophosphatase family protein; TIGRFAM: histidinol-phosphate phosphatase; PFAM: inositol monophosphatase.


ensembl_gene_id: Rpdx1_1068
symbol: ADU42694.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_1143 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver.


ensembl_gene_id: Rpdx1_1070
symbol: ADU42696.1
gene_biotype: protein_coding
description:
  PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: rce:RC1_3068 oxidoreductase with iron-sulfur subunit, putative.


ensembl_gene_id: Rpdx1_1071
symbol: ADU42697.1
gene_biotype: protein_coding
description:
  PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: rce:RC1_3069 xanthine dehydrogenase YagS FAD-binding subunit,putative.


ensembl_gene_id: Rpdx1_1072
symbol: ADU42698.1
gene_biotype: protein_coding
description:
  PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: rce:RC1_3070 xanthine dehydrogenase YagR molybdenum-binding subunit, putative.


ensembl_gene_id: Rpdx1_1074
symbol: ADU42700.1
gene_biotype: protein_coding
description:
  Flavoprotein WrbA; KEGG: bbt:BBta_1650 TrpR binding protein WrbA; TIGRFAM: flavoprotein WrbA; PFAM: NADPH-dependent FMN reductase.


ensembl_gene_id: Rpdx1_1075
symbol: ADU42701.1
gene_biotype: protein_coding
description:
  PFAM: Pirin domain protein; KEGG: bbt:BBta_1651 putative pirin family protein; Belongs to the pirin family.


ensembl_gene_id: Rpdx1_1076
symbol: ADU42702.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bja:bll7565 transcriptional regulatory protein.


ensembl_gene_id: Rpdx1_1078
symbol: ADU42704.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF179; KEGG: nha:Nham_3550 hypothetical protein; Belongs to the UPF0301 (AlgH) family.


ensembl_gene_id: Rpdx1_1079
symbol: ADU42705.1
gene_biotype: protein_coding
description:
  Diguanylate cyclase/phosphodiesterase with PAS/PAC and periplasmic/7TM domain sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; Diverse 7TM receptor transmembrane region; Diverse 7TM receptor extracellular region 2; PAS fold-3 domain protein; GGDEF domain containing protein; KEGG: bja:bll1502 hypothetical protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein.


ensembl_gene_id: Rpdx1_1080
symbol: ADU42706.1
gene_biotype: protein_coding
description:
  NAD(P)H quinone oxidoreductase, PIG3 family; KEGG: bra:BRADO1103 putative NADPH quinone oxidoreductase; TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein.


ensembl_gene_id: Rpdx1_1083
symbol: rpmE
gene_biotype: protein_coding
description:
  Ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.


ensembl_gene_id: Rpdx1_1084
symbol: ADU42710.1
gene_biotype: protein_coding
description:
  TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter related; ABC transporter transmembrane region; KEGG: nwi:Nwi_2746 ABC transporter, ATP-binding/permease protein; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_1091
symbol: ADU42717.1
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; KEGG: bra:BRADO1113 putative cyclopropane-fatty-acyl-phospholipid synthase.


ensembl_gene_id: Rpdx1_1092
symbol: ADU42718.1
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: hha:Hhal_2261 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase.


ensembl_gene_id: Rpdx1_1094
symbol: ADU42720.1
gene_biotype: protein_coding
description:
  KEGG: xau:Xaut_0314 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.


ensembl_gene_id: Rpdx1_1097
symbol: ubiX
gene_biotype: protein_coding
description:
  3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.


ensembl_gene_id: Rpdx1_1098
symbol: ADU42724.1
gene_biotype: protein_coding
description:
  UbiD family decarboxylase; KEGG: bja:blr7629 hypothetical protein; TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; Belongs to the UbiD family.


ensembl_gene_id: Rpdx1_1103
symbol: ADU42729.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_3536 Sel1; PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein.


ensembl_gene_id: Rpdx1_1105
symbol: ADU42731.1
gene_biotype: protein_coding
description:
  KEGG: oca:OCAR_7313 fructose-bisphosphate aldolase class-I; PFAM: fructose-bisphosphate aldolase class-I.


ensembl_gene_id: Rpdx1_1106
symbol: pgk
gene_biotype: protein_coding
description:
  KEGG: nwi:Nwi_2736 phosphoglycerate kinase; PFAM: phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.


ensembl_gene_id: Rpdx1_1107
symbol: ADU42733.1
gene_biotype: protein_coding
description:
  TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: bra:BRADO1124 glyceraldehyde-3-phosphate dehydrogenase (GAPDH); PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.


ensembl_gene_id: Rpdx1_1108
symbol: ADU42734.1
gene_biotype: protein_coding
description:
  Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.


ensembl_gene_id: Rpdx1_1110
symbol: ADU42736.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF710; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.


ensembl_gene_id: Rpdx1_1111
symbol: ADU42737.1
gene_biotype: protein_coding
description:
  PFAM: (Uracil-5)-methyltransferase; KEGG: bra:BRADO2158 putative RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.


ensembl_gene_id: Rpdx1_1112
symbol: ADU42738.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll0821 multidrug efflux protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE.


ensembl_gene_id: Rpdx1_1113
symbol: ADU42739.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_0777 hemolysin A; TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein.


ensembl_gene_id: Rpdx1_1114
symbol: ADU42740.1
gene_biotype: protein_coding
description:
  PFAM: nucleoside 2-deoxyribosyltransferase; KEGG: bbt:BBta_2478 putative nucleoside 2-deoxyribosyltransferase.


ensembl_gene_id: Rpdx1_1115
symbol: dxs
gene_biotype: protein_coding
description:
  Deoxyxylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.


ensembl_gene_id: Rpdx1_1116
symbol: xseB
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.


ensembl_gene_id: Rpdx1_1118
symbol: ADU42744.1
gene_biotype: protein_coding
description:
  PFAM: 5'-Nucleotidase domain protein; metallophosphoesterase; KEGG: bja:bll2654 putative 5'-nucleotidase family protein; Belongs to the 5'-nucleotidase family.


ensembl_gene_id: Rpdx1_1120
symbol: kdpA
gene_biotype: protein_coding
description:
  Potassium-transporting ATPase, A subunit; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane.


ensembl_gene_id: Rpdx1_1121
symbol: kdpB
gene_biotype: protein_coding
description:
  K+-transporting ATPase, B subunit; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system. Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IA subfamily.


ensembl_gene_id: Rpdx1_1122
symbol: kdpC
gene_biotype: protein_coding
description:
  Potassium-transporting ATPase, C subunit; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP-binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB/KdpC/ATP ternary complex.


ensembl_gene_id: Rpdx1_1123
symbol: ADU42749.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_2991 osmosensitive K+ channel signal transduction histidine kinase; PFAM: Osmosensitive K channel His kinase sensor; UspA domain protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.


ensembl_gene_id: Rpdx1_1124
symbol: ADU42750.1
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; KEGG: nha:Nham_2990 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.


ensembl_gene_id: Rpdx1_1127
symbol: ADU42753.1
gene_biotype: protein_coding
description:
  TIGRFAM: urea carboxylase; urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; Allophanate hydrolase subunit 1; biotin/lipoyl attachment domain-containing protein; KEGG: rle:pRL90293 putative UreA amidolyase; SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1.


ensembl_gene_id: Rpdx1_1128
symbol: ADU42754.1
gene_biotype: protein_coding
description:
  KEGG: rlg:Rleg_6106 UreA carboxylase-associated protein 1; TIGRFAM: urea carboxylase-associated protein 1; PFAM: Domain of unknown function DUF1989.


ensembl_gene_id: Rpdx1_1129
symbol: ADU42755.1
gene_biotype: protein_coding
description:
  KEGG: xau:Xaut_1224 hypothetical protein; TIGRFAM: urea carboxylase-associated protein 2; PFAM: Domain of unknown function DUF1989.


ensembl_gene_id: Rpdx1_1130
symbol: ADU42756.1
gene_biotype: protein_coding
description:
  KEGG: azc:AZC_4399 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_1131
symbol: ADU42757.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xau:Xaut_1226 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Rpdx1_1132
symbol: ADU42758.1
gene_biotype: protein_coding
description:
  KEGG: xau:Xaut_1227 NlpA lipoprotein; TIGRFAM: ABC transporter periplasmic binding protein, urea carboxylase region; PFAM: NLPA lipoprotein.


ensembl_gene_id: Rpdx1_1133
symbol: ADU42759.1
gene_biotype: protein_coding
description:
  PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; response regulator receiver; KEGG: bja:blr5269 two-component hybrid sensor and regulator; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; response regulator receiver.


ensembl_gene_id: Rpdx1_1134
symbol: ADU42760.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, IclR family; TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bja:blr1071 transcriptional regulatory protein; SMART: regulatory protein IclR.


ensembl_gene_id: Rpdx1_1136
symbol: ADU42762.1
gene_biotype: protein_coding
description:
  PFAM: glutamine synthetase catalytic region; KEGG: mno:Mnod_8463 glutamine synthetase catalytic region.


ensembl_gene_id: Rpdx1_1137
symbol: ADU42763.1
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: bov:BOV_A0610 amino acid ABC transporter, periplasmic amino-acid binding protein.


ensembl_gene_id: Rpdx1_1138
symbol: ADU42764.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: bmr:BMI_II646 branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Rpdx1_1139
symbol: ADU42765.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: ara:Arad_9508 branched-chain amino acid ABC transporter; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Rpdx1_1140
symbol: ADU42766.1
gene_biotype: protein_coding
description:
  ABC transporter related protein; KEGG: azl:AZL_d00570 branched-chain amino acid transport system ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_1141
symbol: ADU42767.1
gene_biotype: protein_coding
description:
  ABC transporter related protein; KEGG: rec:RHECIAT_CH0003687 probable branched-chain amino acid ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_1142
symbol: ADU42768.1
gene_biotype: protein_coding
description:
  Putative PAS/PAC sensor protein; KEGG: atc:AGR_C_3927 hypothetical protein; PFAM: PAS fold-2 domain protein; GAF domain protein; Phytochrome central region domain protein; HWE histidine kinase; response regulator receiver; SMART: GAF domain protein; response regulator receiver.


ensembl_gene_id: Rpdx1_1143
symbol: ADU42769.1
gene_biotype: protein_coding
description:
  Putative transcriptional regulator, Crp/Fnr family; SMART: regulatory protein Crp; KEGG: bja:blr0536 transcriptional regulatory protein.


ensembl_gene_id: Rpdx1_1147
symbol: ADU42773.1
gene_biotype: protein_coding
description:
  PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pla:Plav_0463 acyl-CoA dehydrogenase domain-containing protein.


ensembl_gene_id: Rpdx1_1148
symbol: ADU42774.1
gene_biotype: protein_coding
description:
  Regulatory protein MarR; KEGG: bbt:BBta_7584 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.


ensembl_gene_id: Rpdx1_1151
symbol: ADU42777.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: bja:bll0197 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Rpdx1_1152
symbol: ADU42778.1
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: bja:bll0196 ABC transporter substrate-binding protein.


ensembl_gene_id: Rpdx1_1153
symbol: ADU42779.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: bja:bll0195 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Rpdx1_1154
symbol: ADU42780.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll0194 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_1155
symbol: ADU42781.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll0193 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_1157
symbol: ADU42783.1
gene_biotype: protein_coding
description:
  Regulatory protein ArsR; KEGG: mdi:METDI0764 transcriptional regulator, ArsR family; putative SoxR protein; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR.


ensembl_gene_id: Rpdx1_1158
symbol: ADU42784.1
gene_biotype: protein_coding
description:
  KEGG: rme:Rmet_2371 rhodanese-like protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein.


ensembl_gene_id: Rpdx1_1159
symbol: ADU42785.1
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pyridine nucleotide-disulfide oxidoreductase family protein.


ensembl_gene_id: Rpdx1_1161
symbol: ADU42787.1
gene_biotype: protein_coding
description:
  KEGG: azl:AZL_007750 nitrogenase-associated protein; TIGRFAM: nitrogenase-associated protein; PFAM: arsenate reductase and related; Belongs to the ArsC family.


ensembl_gene_id: Rpdx1_1162
symbol: ADU42788.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function DUF2478; KEGG: bja:blr6953 molybdenum ABC transporter ATP-binding protein.


ensembl_gene_id: Rpdx1_1163
symbol: ADU42789.1
gene_biotype: protein_coding
description:
  modD protein; KEGG: bja:bll6950 putative pyrophosphorylase; TIGRFAM: modD protein; PFAM: Quinolinate phosphoribosyl transferase; Belongs to the NadC/ModD family.


ensembl_gene_id: Rpdx1_1168
symbol: ADU42794.1
gene_biotype: protein_coding
description:
  PFAM: Extradiol ring-cleavage dioxygenase LigAB LigA subunit; KEGG: bbt:BBta_2733 protocatechuate 4,5-dioxygenase subunit alpha.


ensembl_gene_id: Rpdx1_1169
symbol: ADU42795.1
gene_biotype: protein_coding
description:
  PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: bbt:BBta_2734 protocatechuate 4,5-dioxygenase subunit beta.


ensembl_gene_id: Rpdx1_1173
symbol: ADU42799.1
gene_biotype: protein_coding
description:
  TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: bra:BRADO3206 nitrogen fixation protein FixG.


ensembl_gene_id: Rpdx1_1175
symbol: ADU42801.1
gene_biotype: protein_coding
description:
  PFAM: transcriptional regulator PadR family protein; KEGG: xau:Xaut_0164 PadR-like family transcriptional regulator.


ensembl_gene_id: Rpdx1_1176
symbol: ADU42802.1
gene_biotype: protein_coding
description:
  Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.


ensembl_gene_id: Rpdx1_1179
symbol: ADU42805.1
gene_biotype: protein_coding
description:
  Regulatory protein ArsR; KEGG: bja:bll5773 transcriptional regulatory protein; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR.


ensembl_gene_id: Rpdx1_1180
symbol: ADU42806.1
gene_biotype: protein_coding
description:
  Efflux transporter, RND family, MFP subunit; KEGG: bbt:BBta_3720 RND family efflux pump membrane fusion protein; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Rpdx1_1181
symbol: ADU42807.1
gene_biotype: protein_coding
description:
  PFAM: acriflavin resistance protein; KEGG: bja:bll5771 AcrB/AcrD/AcrF family cation efflux protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: Rpdx1_1184
symbol: ADU42810.1
gene_biotype: protein_coding
description:
  PFAM: Ferric reductase domain protein transmembrane component domain; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: app:CAP2UW1_2674 ferric reductase domain protein protein transmembrane component domain protein.


ensembl_gene_id: Rpdx1_1186
symbol: ADU42812.1
gene_biotype: protein_coding
description:
  PFAM: DNA methylase N-4/N-6 domain protein; KEGG: nha:Nham_3225 DNA methylase N-4/N-6; Belongs to the N(4)/N(6)-methyltransferase family.


ensembl_gene_id: Rpdx1_1187
symbol: ADU42813.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function zinc metallopeptidase putative; KEGG: nwi:Nwi_2602 hypothetical protein.


ensembl_gene_id: Rpdx1_1188
symbol: ADU42814.1
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein B; May be involved in the biosynthesis of molybdopterin. Belongs to the MoaB/Mog family.


ensembl_gene_id: Rpdx1_1191
symbol: ADU42817.1
gene_biotype: protein_coding
description:
  PFAM: amino acid permease-associated region; KEGG: pmy:Pmen_3544 amino acid permease-associated region.


ensembl_gene_id: Rpdx1_1194
symbol: ADU42820.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family with acetyltransferase activity; KEGG: bja:bll2512 transcriptional regulatory protein; PFAM: regulatory protein MarR; GCN5-related N-acetyltransferase; SMART: regulatory protein MarR.


ensembl_gene_id: Rpdx1_1196
symbol: ADU42822.1
gene_biotype: protein_coding
description:
  Radical SAM domain protein; KEGG: bja:blr2519 hypothetical protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: Rpdx1_1199
symbol: ADU42825.1
gene_biotype: protein_coding
description:
  KEGG: azc:AZC_1729 TonB-dependent siderophore receptor precursor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.


ensembl_gene_id: Rpdx1_1200
symbol: ADU42826.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO2019 putative DNA polymerases; TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily.


ensembl_gene_id: Rpdx1_1201
symbol: ADU42827.1
gene_biotype: protein_coding
description:
  Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.


ensembl_gene_id: Rpdx1_1203
symbol: ispE
gene_biotype: protein_coding
description:
  4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.


ensembl_gene_id: Rpdx1_1204
symbol: ADU42830.1
gene_biotype: protein_coding
description:
  PFAM: Polyprenyl synthetase; KEGG: bbt:BBta_2349 octaprenyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: Rpdx1_1210
symbol: glyQ
gene_biotype: protein_coding
description:
  TIGRFAM: glycyl-tRNA synthetase, alpha subunit; KEGG: nwi:Nwi_2587 glycyl-tRNA synthetase subunit alpha; PFAM: glycyl-tRNA synthetase alpha subunit.


ensembl_gene_id: Rpdx1_1212
symbol: glyS
gene_biotype: protein_coding
description:
  TIGRFAM: glycyl-tRNA synthetase, beta subunit; KEGG: nwi:Nwi_2586 glycyl-tRNA synthetase subunit beta.


ensembl_gene_id: Rpdx1_1216
symbol: ADU42842.1
gene_biotype: protein_coding
description:
  TIGRFAM: pyruvate, phosphate dikinase; KEGG: bja:blr2538 pyruvate phosphate dikinase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; PEP-utilizing protein.


ensembl_gene_id: Rpdx1_1218
symbol: ADU42844.1
gene_biotype: protein_coding
description:
  TIGRFAM: nicotinate-nucleotide pyrophosphorylase; KEGG: bja:bll2540 nicotinate-mononucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; Belongs to the NadC/ModD family.


ensembl_gene_id: Rpdx1_1220
symbol: nadA
gene_biotype: protein_coding
description:
  Quinolinate synthetase complex, A subunit; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.


ensembl_gene_id: Rpdx1_1221
symbol: ADU42847.1
gene_biotype: protein_coding
description:
  Quinone oxidoreductase, YhdH/YhfP family; KEGG: nha:Nham_3502 alcohol dehydrogenase GroES-like protein; TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein.


ensembl_gene_id: Rpdx1_1223
symbol: ADU42849.1
gene_biotype: protein_coding
description:
  KEGG: pmy:Pmen_3748 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH.


ensembl_gene_id: Rpdx1_1224
symbol: ADU42850.1
gene_biotype: protein_coding
description:
  PFAM: Threonyl/alanyl tRNA synthetase SAD; Alanyl-tRNA synthetase, class IIc-like; KEGG: rso:RSc0988 hypothetical protein.


ensembl_gene_id: Rpdx1_1227
symbol: ADU42852.1
gene_biotype: protein_coding
description:
  KEGG: nhl:Nhal_4024 helicase domain protein; PFAM: helicase domain protein; SNF2-related protein; SMART: helicase domain protein; DEAD-like helicase.


ensembl_gene_id: Rpdx1_1231
symbol: ADU42856.1
gene_biotype: protein_coding
description:
  PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: nha:Nham_4021 metal dependent phosphohydrolase.


ensembl_gene_id: Rpdx1_1232
symbol: ADU42857.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: nar:Saro_2477 LysR family transcriptional regulator.


ensembl_gene_id: Rpdx1_1234
symbol: ADU42859.1
gene_biotype: protein_coding
description:
  TIGRFAM: DNA-3-methyladenine glycosylase I; KEGG: bja:bll2553 3-methyladenine-DNA glycosylase; PFAM: methyladenine glycosylase.


ensembl_gene_id: Rpdx1_1235
symbol: ADU42860.1
gene_biotype: protein_coding
description:
  Folate-binding protein YgfZ; KEGG: nwi:Nwi_2704 glycine cleavage T protein (aminomethyl transferase); TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; Belongs to the GcvT family.


ensembl_gene_id: Rpdx1_1236
symbol: ADU42861.1
gene_biotype: protein_coding
description:
  TIGRFAM: dihydroorotase, multifunctional complex type; KEGG: nha:Nham_4018 dihydroorotase; PFAM: amidohydrolase.


ensembl_gene_id: Rpdx1_1240
symbol: ADU42865.1
gene_biotype: protein_coding
description:
  PFAM: NUDIX hydrolase; KEGG: bja:bll2562 GDP-mannose mannosyl hydrolase; Belongs to the Nudix hydrolase family.


ensembl_gene_id: Rpdx1_1242
symbol: ADU42867.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF159; KEGG: bja:blr2564 hypothetical protein; Belongs to the SOS response-associated peptidase family.


ensembl_gene_id: Rpdx1_1243
symbol: ADU42868.1
gene_biotype: protein_coding
description:
  PFAM: FAD linked oxidase domain protein; KEGG: bbt:BBta_2386 putative D-lactate ferricytochrome c oxidoreductase.


ensembl_gene_id: Rpdx1_1244
symbol: ADU42869.1
gene_biotype: protein_coding
description:
  Sua5/YciO/YrdC/YwlC family protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.


ensembl_gene_id: Rpdx1_1245
symbol: ADU42870.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; KEGG: azc:AZC_3223 putative transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Rpdx1_1246
symbol: ADU42871.1
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: azc:AZC_3224 putative 4-methylmuconolactone transporter.


ensembl_gene_id: Rpdx1_1253
symbol: ADU42878.1
gene_biotype: protein_coding
description:
  PFAM: Curli production assembly/transport component CsgG; KEGG: met:M446_2419 curli production assembly/transport component CsgG.


ensembl_gene_id: Rpdx1_1257
symbol: ADU42882.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family; KEGG: mag:amb3351 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; cyclic nucleotide-binding.


ensembl_gene_id: Rpdx1_1259
symbol: ADU42884.1
gene_biotype: protein_coding
description:
  Alkylhydroperoxidase like protein, AhpD family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.


ensembl_gene_id: Rpdx1_1260
symbol: ribB
gene_biotype: protein_coding
description:
  3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.


ensembl_gene_id: Rpdx1_1263
symbol: ADU42888.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll1533 putative methyl accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer.


ensembl_gene_id: Rpdx1_1265
symbol: ruvC
gene_biotype: protein_coding
description:
  Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.


ensembl_gene_id: Rpdx1_1267
symbol: ruvA
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.


ensembl_gene_id: Rpdx1_1270
symbol: ruvB
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.


ensembl_gene_id: Rpdx1_1272
symbol: ADU42895.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_3520 4-hydroxybenzoyl-CoA thioesterase; TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein.


ensembl_gene_id: Rpdx1_1273
symbol: ADU42896.1
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tmz:Tmz1t_3718 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Rpdx1_1278
symbol: ADU42901.1
gene_biotype: protein_coding
description:
  Putative RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: bja:bll7170 hypothetical protein; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2.


ensembl_gene_id: Rpdx1_1286
symbol: ADU42909.1
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: sme:SM_b20030 RNA polymerase sigma factor SigJ; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2.


ensembl_gene_id: Rpdx1_1287
symbol: tolQ
gene_biotype: protein_coding
description:
  Protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: Rpdx1_1290
symbol: tolB
gene_biotype: protein_coding
description:
  Tol-Pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: Rpdx1_1291
symbol: ADU42914.1
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: nha:Nham_3511 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein.


ensembl_gene_id: Rpdx1_1293
symbol: pal
gene_biotype: protein_coding
description:
  Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: Rpdx1_1294
symbol: cpoB
gene_biotype: protein_coding
description:
  Tol-pal system protein YbgF; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.


ensembl_gene_id: Rpdx1_1295
symbol: tilS
gene_biotype: protein_coding
description:
  tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.


ensembl_gene_id: Rpdx1_1296
symbol: ftsH
gene_biotype: protein_coding
description:
  ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family.  In the central section; belongs to the AAA ATPase family.


ensembl_gene_id: Rpdx1_1303
symbol: ADU42926.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: nha:Nham_3202 protein of unknown function DUF224, cysteine-rich region.


ensembl_gene_id: Rpdx1_1304
symbol: ADU42927.1
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: pfs:PFLU5927 transcriptional regulatory protein algp (alginate regulatory protein algr3).


ensembl_gene_id: Rpdx1_1306
symbol: ADU42929.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_1667 putative ABC transporter (fused ATP-binding and permease components); PFAM: ABC transporter domain protein; ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_1308
symbol: ADU42931.1
gene_biotype: protein_coding
description:
  PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: oca:OCAR_7274 amine oxidase.


ensembl_gene_id: Rpdx1_1310
symbol: groL
gene_biotype: protein_coding
description:
  Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.


ensembl_gene_id: Rpdx1_1311
symbol: groS
gene_biotype: protein_coding
description:
  Chaperonin Cpn10; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.


ensembl_gene_id: Rpdx1_1316
symbol: ADU42939.1
gene_biotype: protein_coding
description:
  Putative periplasmic ligand-binding sensor protein; PFAM: Protein of unknown function DUF2076; KEGG: bja:blr7528 hypothetical protein.


ensembl_gene_id: Rpdx1_1319
symbol: hisG
gene_biotype: protein_coding
description:
  ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Long subfamily.


ensembl_gene_id: Rpdx1_1320
symbol: ADU42943.1
gene_biotype: protein_coding
description:
  Histidine--tRNA ligase; KEGG: bra:BRADO6106 ATP phosphoribosyltransferase regulatory subunit; PFAM: tRNA synthetase class II (G H P and S).


ensembl_gene_id: Rpdx1_1321
symbol: ADU42944.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.


ensembl_gene_id: Rpdx1_1323
symbol: ubiA
gene_biotype: protein_coding
description:
  4-hydroxybenzoate polyprenyl transferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.


ensembl_gene_id: Rpdx1_1325
symbol: ADU42948.1
gene_biotype: protein_coding
description:
  Peptidase U62 modulator of DNA gyrase; KEGG: bja:bll7519 PmbA/TldD related protein; manually curated; PFAM: peptidase U62 modulator of DNA gyrase.


ensembl_gene_id: Rpdx1_1328
symbol: ADU42951.1
gene_biotype: protein_coding
description:
  Three-deoxy-D-manno-octulosonic-acid transferase domain protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.


ensembl_gene_id: Rpdx1_1329
symbol: lpxK
gene_biotype: protein_coding
description:
  Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).


ensembl_gene_id: Rpdx1_1331
symbol: xseA
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.


ensembl_gene_id: Rpdx1_1332
symbol: purD
gene_biotype: protein_coding
description:
  TIGRFAM: phosphoribosylamine/glycine ligase; KEGG: nha:Nham_3173 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; Belongs to the GARS family.


ensembl_gene_id: Rpdx1_1334
symbol: tadA
gene_biotype: protein_coding
description:
  CMP/dCMP deaminase zinc-binding protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: Rpdx1_1335
symbol: ADU42958.1
gene_biotype: protein_coding
description:
  RNA-binding S4 domain protein; KEGG: nha:Nham_3171 pseudouridine synthase, Rsu; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: Rpdx1_1336
symbol: ADU42959.1
gene_biotype: protein_coding
description:
  Methyltransferase; KEGG: bja:bll7494 hypothetical protein; TIGRFAM: methyltransferase; PFAM: conserved hypothetical protein.


ensembl_gene_id: Rpdx1_1337
symbol: ADU42960.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr7474 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; TIGRFAM: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific; modification methylase, HemK family; PFAM: methyltransferase small; Belongs to the protein N5-glutamine methyltransferase family.


ensembl_gene_id: Rpdx1_1339
symbol: ADU42962.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_1725 molybdopterin synthase subunit MoaD; TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein.


ensembl_gene_id: Rpdx1_1340
symbol: ADU42963.1
gene_biotype: protein_coding
description:
  TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; KEGG: nwi:Nwi_2525 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: Rpdx1_1341
symbol: uvrC
gene_biotype: protein_coding
description:
  Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.


ensembl_gene_id: Rpdx1_1343
symbol: ADU42966.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO6053 cold shock protein, DNA binding; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein.


ensembl_gene_id: Rpdx1_1344
symbol: rlmJ
gene_biotype: protein_coding
description:
  Protein of unknown function DUF519; Specifically methylates the adenine in position 2030 of 23S rRNA.


ensembl_gene_id: Rpdx1_1345
symbol: ADU42968.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_3160 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver.


ensembl_gene_id: Rpdx1_1348
symbol: hisS
gene_biotype: protein_coding
description:
  TIGRFAM: histidyl-tRNA synthetase; KEGG: nwi:Nwi_2533 histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein.


ensembl_gene_id: Rpdx1_1349
symbol: ADU42972.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_1722 beta alanine--pyruvate transaminase; PFAM: aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Rpdx1_1350
symbol: ADU42973.1
gene_biotype: protein_coding
description:
  Diguanylate phosphodiesterase; KEGG: bra:BRADO6063 EAL domain-containing protein; PFAM: EAL domain protein; SMART: EAL domain protein.


ensembl_gene_id: Rpdx1_1351
symbol: ADU42974.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr7478 hypothetical protein; TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; HAD-superfamily subfamily IIA hydrolase like protein; PFAM: Haloacid dehalogenase domain protein hydrolase.


ensembl_gene_id: Rpdx1_1355
symbol: ADU42978.1
gene_biotype: protein_coding
description:
  PFAM: ATPase associated with various cellular activities AAA_3; KEGG: bbt:BBta_2271 putative MoxR family protein.


ensembl_gene_id: Rpdx1_1359
symbol: ADU42982.1
gene_biotype: protein_coding
description:
  PFAM: Polynucleotide adenylyltransferase region; KEGG: nha:Nham_3247 polynucleotide adenylyltransferase region; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.


ensembl_gene_id: Rpdx1_1361
symbol: queE
gene_biotype: protein_coding
description:
  Radical SAM domain protein; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.


ensembl_gene_id: Rpdx1_1362
symbol: trmL
gene_biotype: protein_coding
description:
  tRNA/rRNA methyltransferase (SpoU); Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide.


ensembl_gene_id: Rpdx1_1364
symbol: ADU42987.1
gene_biotype: protein_coding
description:
  Cytochrome c1; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.


ensembl_gene_id: Rpdx1_1368
symbol: pdxH
gene_biotype: protein_coding
description:
  Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).


ensembl_gene_id: Rpdx1_1370
symbol: ADU42993.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO2148 putative heat shock protein DnaJ; PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; SMART: heat shock protein DnaJ domain protein.


ensembl_gene_id: Rpdx1_1371
symbol: ADU42994.1
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bra:BRADO2151 enoyl-(acyl carrier protein) reductase.


ensembl_gene_id: Rpdx1_1373
symbol: aroC
gene_biotype: protein_coding
description:
  Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.


ensembl_gene_id: Rpdx1_1374
symbol: ADU42997.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr2632 putative adenylate cyclase protein; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase.


ensembl_gene_id: Rpdx1_1375
symbol: clpS
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.


ensembl_gene_id: Rpdx1_1382
symbol: ADU43005.1
gene_biotype: protein_coding
description:
  Microcystin LR degradation protein MlrC-like protein; Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC); Belongs to the peptidase M81 family.


ensembl_gene_id: Rpdx1_1383
symbol: ADU43006.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_5258 putative ABC transporter ATP-binding protein; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Rpdx1_1384
symbol: ADU43007.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bra:BRADO2920 putative ABC transporter (permease protein); putative membrane protein.


ensembl_gene_id: Rpdx1_1385
symbol: ADU43008.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_5256 putative ABC transporter (permease protein).


ensembl_gene_id: Rpdx1_1387
symbol: ADU43010.1
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: bbt:BBta_5254 putative ABC transporter (substrate-binding protein).


ensembl_gene_id: Rpdx1_1389
symbol: ADU43012.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_3002 signal-transduction protein; PFAM: CBS domain containing protein; SMART: CBS domain containing protein.


ensembl_gene_id: Rpdx1_1393
symbol: ADU43016.1
gene_biotype: protein_coding
description:
  Thiamine pyrophosphate protein domain protein TPP-binding protein; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.


ensembl_gene_id: Rpdx1_1398
symbol: ADU43021.1
gene_biotype: protein_coding
description:
  Ferredoxin--NADP(+) reductase; KEGG: nha:Nham_1321 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Rpdx1_1399
symbol: ADU43022.1
gene_biotype: protein_coding
description:
  PFAM: Cl- channel voltage-gated family protein; KEGG: bra:BRADO3095 putative H(+)/Cl(-) exchange transporter.


ensembl_gene_id: Rpdx1_1413
symbol: ADU43036.1
gene_biotype: protein_coding
description:
  TIGRFAM: methionine-R-sulfoxide reductase; KEGG: nha:Nham_1330 methionine sulfoxide reductase B; PFAM: Methionine sulfoxide reductase B.


ensembl_gene_id: Rpdx1_1417
symbol: ADU43039.1
gene_biotype: protein_coding
description:
  KEGG: oca:OCAR_5369 flagellar basal body FlaE domain protein; TIGRFAM: fagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein.


ensembl_gene_id: Rpdx1_1418
symbol: ADU43040.1
gene_biotype: protein_coding
description:
  KEGG: oca:OCAR_5370 flagellar hook-associated protein FlgK; TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.


ensembl_gene_id: Rpdx1_1420
symbol: ADU43042.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF1522; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.


ensembl_gene_id: Rpdx1_1423
symbol: ADU43045.1
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; KEGG: bbt:BBta_5633 putative sugar-nucleotide epimerase/dehydratase.


ensembl_gene_id: Rpdx1_1424
symbol: ADU43046.1
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; KEGG: bbt:BBta_5635 putative dTDP-glucose 4,6-dehydratase.


ensembl_gene_id: Rpdx1_1426
symbol: ADU43048.1
gene_biotype: protein_coding
description:
  KEGG: cbu:CBU_0693 putative pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit; PFAM: dehydrogenase E1 component.


ensembl_gene_id: Rpdx1_1427
symbol: ADU43049.1
gene_biotype: protein_coding
description:
  PFAM: Transketolase central region; Transketolase domain protein; KEGG: cbd:CBUD_0706 pyruvate dehydrogenase E1 component beta subunit.


ensembl_gene_id: Rpdx1_1429
symbol: ADU43051.1
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bbt:BBta_5638 putative alcohol dehydrogenase (zinc-binding).


ensembl_gene_id: Rpdx1_1430
symbol: ADU43052.1
gene_biotype: protein_coding
description:
  Cytidyltransferase-related domain protein; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: Rpdx1_1431
symbol: ADU43053.1
gene_biotype: protein_coding
description:
  PFAM: Nucleotidyl transferase; KEGG: bbt:BBta_5632 putative sugar-phosphate nucleotidyl transferase.


ensembl_gene_id: Rpdx1_1433
symbol: ADU43055.1
gene_biotype: protein_coding
description:
  PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP-binding; KEGG: sus:Acid_2243 thiamine pyrophosphate binding domain-containing protein; Belongs to the TPP enzyme family.


ensembl_gene_id: Rpdx1_1434
symbol: ADU43056.1
gene_biotype: protein_coding
description:
  TPR repeat-containing protein; KEGG: bra:BRADO1360 O-linked N-acetylglucosamine transferase; PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide repeat.


ensembl_gene_id: Rpdx1_1437
symbol: ADU43059.1
gene_biotype: protein_coding
description:
  PFAM: flagellar FlaF family protein; KEGG: oca:OCAR_5375 flagellar biosynthesis regulatory protein FlaF.


ensembl_gene_id: Rpdx1_1441
symbol: flgI
gene_biotype: protein_coding
description:
  Flagellar P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.


ensembl_gene_id: Rpdx1_1442
symbol: ADU43064.1
gene_biotype: protein_coding
description:
  PFAM: Flagellar assembly regulator FliX, class II; KEGG: bja:bll5837 flagellar assembly regulator FliX.


ensembl_gene_id: Rpdx1_1443
symbol: dksA
gene_biotype: protein_coding
description:
  Transcriptional regulator, TraR/DksA family; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.


ensembl_gene_id: Rpdx1_1446
symbol: ADU43068.1
gene_biotype: protein_coding
description:
  KEGG: rhi:NGR_c35220 putative efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Rpdx1_1447
symbol: ADU43069.1
gene_biotype: protein_coding
description:
  KEGG: atc:AGR_L_3217 RND multidrug efflux transporter MexD; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein.


ensembl_gene_id: Rpdx1_1448
symbol: flgH
gene_biotype: protein_coding
description:
  Flagellar L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.


ensembl_gene_id: Rpdx1_1449
symbol: ADU43071.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_1382 flagellar basal body P-ring biosynthesis protein FlgA; TIGRFAM: flagella basal body P-ring formation protein FlgA; PFAM: SAF domain protein.


ensembl_gene_id: Rpdx1_1450
symbol: ADU43072.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_1383 flagellar basal body rod protein FlgG; TIGRFAM: flagellar basal-body rod protein FlgG; fagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.


ensembl_gene_id: Rpdx1_1451
symbol: ADU43073.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_1384 flagellar basal body rod protein FlgF; TIGRFAM: flagellar basal-body rod protein FlgF; fagellar hook-basal body protein; PFAM: flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.


ensembl_gene_id: Rpdx1_1452
symbol: ADU43074.1
gene_biotype: protein_coding
description:
  Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.


ensembl_gene_id: Rpdx1_1453
symbol: ADU43075.1
gene_biotype: protein_coding
description:
  Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.


ensembl_gene_id: Rpdx1_1458
symbol: fliP
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.


ensembl_gene_id: Rpdx1_1460
symbol: ADU43082.1
gene_biotype: protein_coding
description:
  Flagellar basal body rod protein; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.


ensembl_gene_id: Rpdx1_1461
symbol: ADU43083.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll5813 flagellar basal body rod protein FlgC; TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.


ensembl_gene_id: Rpdx1_1462
symbol: fliE
gene_biotype: protein_coding
description:
  PFAM: flagellar hook-basal body complex protein FliE; KEGG: bja:bll5812 flagellar hook-basal body protein FliE.


ensembl_gene_id: Rpdx1_1464
symbol: ADU43086.1
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.


ensembl_gene_id: Rpdx1_1465
symbol: flhB
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.


ensembl_gene_id: Rpdx1_1466
symbol: ADU43088.1
gene_biotype: protein_coding
description:
  Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; response regulator receiver; KEGG: nha:Nham_1398 multi-sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver.


ensembl_gene_id: Rpdx1_1471
symbol: ADU43093.1
gene_biotype: protein_coding
description:
  PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: nha:Nham_2565 glutathione-dependent formaldehyde-activating, GFA.


ensembl_gene_id: Rpdx1_1476
symbol: ADU43098.1
gene_biotype: protein_coding
description:
  Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.


ensembl_gene_id: Rpdx1_1481
symbol: ADU43102.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.


ensembl_gene_id: Rpdx1_1483
symbol: ADU43104.1
gene_biotype: protein_coding
description:
  Nuclear protein SET; KEGG: bbt:BBta_5473 histone-lysine N-methyltransferase; PFAM: nuclear protein SET; SMART: nuclear protein SET.


ensembl_gene_id: Rpdx1_1485
symbol: ADU43106.1
gene_biotype: protein_coding
description:
  Helix-turn-helix domain protein; KEGG: bbt:BBta_5469 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.


ensembl_gene_id: Rpdx1_1488
symbol: ADU43109.1
gene_biotype: protein_coding
description:
  PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: nwi:Nwi_1274 peptidase C14, caspase catalytic subunit P20.


ensembl_gene_id: Rpdx1_1492
symbol: ADU43113.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family; KEGG: bja:bll2244 cAMP-regulatory protein; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp.


ensembl_gene_id: Rpdx1_1498
symbol: recA
gene_biotype: protein_coding
description:
  recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.


ensembl_gene_id: Rpdx1_1499
symbol: gcvP
gene_biotype: protein_coding
description:
  Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.


ensembl_gene_id: Rpdx1_1500
symbol: gcvH
gene_biotype: protein_coding
description:
  Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.


ensembl_gene_id: Rpdx1_1501
symbol: ADU43122.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr5751 glycine cleavage system aminomethyltransferase T; TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel.


ensembl_gene_id: Rpdx1_1502
symbol: alaS
gene_biotype: protein_coding
description:
  alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.


ensembl_gene_id: Rpdx1_1504
symbol: ADU43125.1
gene_biotype: protein_coding
description:
  PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; KEGG: kefC2; glutathione-regulated potassium-efflux system protein KefC-2; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.


ensembl_gene_id: Rpdx1_1505
symbol: ADU43126.1
gene_biotype: protein_coding
description:
  Potassium efflux system protein; KEGG: oca:OCAR_5438 inner membrane protein YbaL; TIGRFAM: potassium efflux system protein; PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.


ensembl_gene_id: Rpdx1_1508
symbol: ADU43129.1
gene_biotype: protein_coding
description:
  TonB-dependent siderophore receptor; KEGG: pfl:PFL_3498 outer membrane ferripyochelin receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor.


ensembl_gene_id: Rpdx1_1509
symbol: ADU43130.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; KEGG: pag:PLES_07001 transcriptional regulator PchR; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Rpdx1_1511
symbol: ADU43132.1
gene_biotype: protein_coding
description:
  TIGRFAM: isocitrate dehydrogenase, NADP-dependent; KEGG: bja:blr5747 isocitrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; Belongs to the isocitrate and isopropylmalate dehydrogenases family.


ensembl_gene_id: Rpdx1_1512
symbol: ADU43133.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll5746 tRNA/rRNA methyltransferase; TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU).


ensembl_gene_id: Rpdx1_1515
symbol: ADU43136.1
gene_biotype: protein_coding
description:
  PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: bja:bll7224 transcription elongation factor regulatory protein.


ensembl_gene_id: Rpdx1_1522
symbol: purC-2
gene_biotype: protein_coding
description:
  TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; KEGG: oca:OCAR_5449 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase.


ensembl_gene_id: Rpdx1_1523
symbol: purS
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase, purS; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assi [...]


ensembl_gene_id: Rpdx1_1525
symbol: purQ
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase I; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist i [...]


ensembl_gene_id: Rpdx1_1526
symbol: ADU43146.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO2830 adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: Adenylosuccinate lyase-like; fumarate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.


ensembl_gene_id: Rpdx1_1528
symbol: ADU43148.1
gene_biotype: protein_coding
description:
  TIGRFAM: ribulose-phosphate 3-epimerase; KEGG: bja:blr5680 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.


ensembl_gene_id: Rpdx1_1529
symbol: ADU43149.1
gene_biotype: protein_coding
description:
  EF-Hand, Calmodulin; KEGG: bra:BRADO2843 hypothetical protein; PFAM: EF-Hand, Calmodulin; SMART: Calcium-binding EF-hand-containing protein.


ensembl_gene_id: Rpdx1_1531
symbol: ADU43151.1
gene_biotype: protein_coding
description:
  PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: bja:blr2789 cytochrome c-type biogenesis protein.


ensembl_gene_id: Rpdx1_1533
symbol: ADU43153.1
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: bbt:BBta_5327 high-affinity branched-chain amino acid ABC transporter (substrate-binding protein).


ensembl_gene_id: Rpdx1_1534
symbol: ADU43154.1
gene_biotype: protein_coding
description:
  ABC transporter related protein; KEGG: bbt:BBta_5326 high-affinity branched-chain amino acid ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_1535
symbol: ADU43155.1
gene_biotype: protein_coding
description:
  KEGG: nwi:Nwi_2211 ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_1536
symbol: ADU43156.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: bbt:BBta_5324 high-affinity branched-chain amino acid ABC transporter (permease protein); Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Rpdx1_1537
symbol: ADU43157.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: bbt:BBta_5323 high-affinity branched-chain amino acid ABC transporter (permease protein); Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Rpdx1_1540
symbol: ADU43160.1
gene_biotype: protein_coding
description:
  PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: bra:BRADO2857 putative carbon-monoxide dehydrogenase small subunit, CoxS-like protein.


ensembl_gene_id: Rpdx1_1541
symbol: ADU43161.1
gene_biotype: protein_coding
description:
  PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: bja:bll5664 putative carbon monoxide dehydrogenase medium subunit.


ensembl_gene_id: Rpdx1_1542
symbol: ADU43162.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_5316 ATPase; PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_1546
symbol: ADU43166.1
gene_biotype: protein_coding
description:
  PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; molybdopterin binding domain; KEGG: bbt:BBta_5312 molybdenum cofactor cytidylyltransferase / molybdopterin molybdochelatase.


ensembl_gene_id: Rpdx1_1547
symbol: ADU43167.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: swi:Swit_2160 LysR family transcriptional regulator.


ensembl_gene_id: Rpdx1_1552
symbol: ADU43172.1
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: fre:Franean1_4360 serine/threonine protein kinase; SMART: GGDEF domain containing protein.


ensembl_gene_id: Rpdx1_1554
symbol: ADU43174.1
gene_biotype: protein_coding
description:
  PFAM: secretion protein HlyD family protein; KEGG: bja:bll5650 hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Rpdx1_1555
symbol: ADU43175.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll5649 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_1556
symbol: ADU43176.1
gene_biotype: protein_coding
description:
  PFAM: ABC-2 type transporter; KEGG: bbt:BBta_5303 putative ABC transporter (fused ATP-binding and permease components).


ensembl_gene_id: Rpdx1_1560
symbol: ADU43180.1
gene_biotype: protein_coding
description:
  Dolichyl-phosphate beta-D-mannosyltransferase; KEGG: bbt:BBta_5297 putative dolichol-phosphate mannosyltransferase; PFAM: glycosyl transferase family 2; GtrA family protein.


ensembl_gene_id: Rpdx1_1562
symbol: ADU43182.1
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nha:Nham_2703 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Rpdx1_1563
symbol: ADU43183.1
gene_biotype: protein_coding
description:
  PFAM: PfkB domain protein; KEGG: bra:BRADO2493 putative sugar kinase; Belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: Rpdx1_1564
symbol: ADU43184.1
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bra:BRADO2495 putative glyoxalase/bleomycin resistance protein/dioxygenase family protein.


ensembl_gene_id: Rpdx1_1568
symbol: ADU43188.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_2700 secretion protein HlyD; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Rpdx1_1569
symbol: ADU43189.1
gene_biotype: protein_coding
description:
  PFAM: acriflavin resistance protein; KEGG: nwi:Nwi_2283 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: Rpdx1_1576
symbol: ADU43196.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr2891 phenylacetate-CoA oxygenase subunit PaaA; TIGRFAM: phenylacetate-CoA oxygenase, PaaG subunit; PFAM: phenylacetic acid catabolic family protein.


ensembl_gene_id: Rpdx1_1577
symbol: ADU43197.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO2520 phenylacetate-CoA oxygenase subunit PaaB; TIGRFAM: phenylacetate-CoA oxygenase, PaaH subunit; PFAM: phenylacetic acid degradation B.


ensembl_gene_id: Rpdx1_1578
symbol: ADU43198.1
gene_biotype: protein_coding
description:
  phenylacetate-CoA oxygenase, PaaI subunit; KEGG: bbt:BBta_2867 phenylacetic acid degradation protein PaaC; TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein.


ensembl_gene_id: Rpdx1_1579
symbol: ADU43199.1
gene_biotype: protein_coding
description:
  phenylacetate-CoA oxygenase, PaaJ subunit; KEGG: bbt:BBta_2868 phenylacetic acid degradation protein PaaD; TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59.


ensembl_gene_id: Rpdx1_1580
symbol: ADU43200.1
gene_biotype: protein_coding
description:
  phenylacetate-CoA oxygenase/reductase, PaaK subunit; KEGG: bja:blr2895 putative ferredoxin reductase electron transfer component protein; TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein.


ensembl_gene_id: Rpdx1_1581
symbol: ADU43201.1
gene_biotype: protein_coding
description:
  PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; KEGG: bbt:BBta_2937 hypothetical protein; Belongs to the TPP enzyme family.


ensembl_gene_id: Rpdx1_1582
symbol: ADU43202.1
gene_biotype: protein_coding
description:
  PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bra:BRADO2592 putative 2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway), bifunctional protein isomerase/decarboxylase HpcE-like.


ensembl_gene_id: Rpdx1_1583
symbol: ADU43203.1
gene_biotype: protein_coding
description:
  TIGRFAM: 3,4-dihydroxyphenylacetate 2,3-dioxygenase; KEGG: bja:bll2967 putative metapyrocatechase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Rpdx1_1584
symbol: ADU43204.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll2968 NAD-dependent succinate aldehyde dehydrogenase; TIGRFAM: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: Rpdx1_1585
symbol: ADU43205.1
gene_biotype: protein_coding
description:
  PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: bbt:BBta_2940 putative 5-carboxymethyl-2-hydroxymuconate isomerase, HpcD-like protein.


ensembl_gene_id: Rpdx1_1586
symbol: ADU43206.1
gene_biotype: protein_coding
description:
  TIGRFAM: homoprotocatechuate degradation operon regulator, HpaR; PFAM: regulatory protein MarR; KEGG: bja:blr2971 transcriptional regulatory protein; SMART: regulatory protein MarR.


ensembl_gene_id: Rpdx1_1587
symbol: ADU43207.1
gene_biotype: protein_coding
description:
  PFAM: Malate/L-lactate dehydrogenase; KEGG: bra:BRADO2597 hypothetical protein; Belongs to the LDH2/MDH2 oxidoreductase family.


ensembl_gene_id: Rpdx1_1589
symbol: ADU43209.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO2598 putative aldolase; PFAM: HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.


ensembl_gene_id: Rpdx1_1591
symbol: ADU43211.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_2947 hypothetical protein; PFAM: Protein of unknown function DUF2126; transglutaminase domain protein; transglutaminase domain protein; SMART: transglutaminase domain protein.


ensembl_gene_id: Rpdx1_1592
symbol: ADU43212.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF404; protein of unknown function DUF407; protein of unknown function DUF403; KEGG: bbt:BBta_2948 hypothetical protein.


ensembl_gene_id: Rpdx1_1593
symbol: ADU43213.1
gene_biotype: protein_coding
description:
  Transglutaminase domain protein; KEGG: bra:BRADO2603 hypothetical protein; PFAM: transglutaminase domain protein; transglutaminase domain protein; SMART: transglutaminase domain protein.


ensembl_gene_id: Rpdx1_1595
symbol: ADU43215.1
gene_biotype: protein_coding
description:
  KEGG: oca:OCAR_6729 methyl-accepting chemotaxis receptor/sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.


ensembl_gene_id: Rpdx1_1596
symbol: ADU43216.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr2994 ethanolamine ammonia-lyase heavy chain; PFAM: Ethanolamine ammonia lyase large subunit.


ensembl_gene_id: Rpdx1_1597
symbol: ADU43217.1
gene_biotype: protein_coding
description:
  Radical SAM domain protein; KEGG: bra:BRADO2623 hypothetical protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: Rpdx1_1598
symbol: ADU43218.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr2996 ethanolamine ammonia-lyase small subunit; PFAM: Ethanolamine ammonia-lyase light chain; Belongs to the EutC family.


ensembl_gene_id: Rpdx1_1602
symbol: ADU43222.1
gene_biotype: protein_coding
description:
  Squalene synthase HpnC; KEGG: bja:blr3001 hypothetical protein; TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase.


ensembl_gene_id: Rpdx1_1603
symbol: ADU43223.1
gene_biotype: protein_coding
description:
  TIGRFAM: squalene synthase HpnD; KEGG: bja:blr3002 putative phytoene synthase; PFAM: Squalene/phytoene synthase.


ensembl_gene_id: Rpdx1_1604
symbol: ADU43224.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr3003 hypothetical protein; TIGRFAM: squalene-associated FAD-dependent desaturase; PFAM: amine oxidase.


ensembl_gene_id: Rpdx1_1605
symbol: ADU43225.1
gene_biotype: protein_coding
description:
  TIGRFAM: squalene-hopene cyclase; squalene/oxidosqualene cyclase; KEGG: bja:blr3004 squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase.


ensembl_gene_id: Rpdx1_1606
symbol: ADU43226.1
gene_biotype: protein_coding
description:
  Hopanoid-associated phosphorylase; KEGG: nha:Nham_2681 hypothetical protein; TIGRFAM: hopanoid-associated phosphorylase; PFAM: purine or other phosphorylase family 1.


ensembl_gene_id: Rpdx1_1608
symbol: ADU43227.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll3006 hypothetical protein; TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnH; PFAM: Radical SAM domain protein.


ensembl_gene_id: Rpdx1_1609
symbol: ispH
gene_biotype: protein_coding
description:
  Hydroxymethylbutenyl pyrophosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.


ensembl_gene_id: Rpdx1_1610
symbol: ADU43229.1
gene_biotype: protein_coding
description:
  TIGRFAM: hopanoid biosynthesis associated RND transporter like protein HpnN; KEGG: nwi:Nwi_2265 hypothetical protein.


ensembl_gene_id: Rpdx1_1611
symbol: ADU43230.1
gene_biotype: protein_coding
description:
  PFAM: aminotransferase class-III; KEGG: bra:BRADO2635 putative aminotransferase; putative ornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Rpdx1_1614
symbol: vapC
gene_biotype: protein_coding
description:
  PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.


ensembl_gene_id: Rpdx1_1616
symbol: ADU43235.1
gene_biotype: protein_coding
description:
  Site-specific DNA-methyltransferase (adenine-specific); KEGG: rci:RCIX1317 type I restriction modification system, methyltransferase subunit; PFAM: N-6 DNA methylase.


ensembl_gene_id: Rpdx1_1618
symbol: ADU43236.1
gene_biotype: protein_coding
description:
  PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: xau:Xaut_3245 glucose-methanol-choline oxidoreductase.


ensembl_gene_id: Rpdx1_1619
symbol: ADU43237.1
gene_biotype: protein_coding
description:
  TIGRFAM: amidohydrolase; KEGG: nha:Nham_2671 peptidase M20D, amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein.


ensembl_gene_id: Rpdx1_1621
symbol: ADU43239.1
gene_biotype: protein_coding
description:
  PFAM: Carbohydrate-selective porin OprB; KEGG: bbt:BBta_3415 putative outer membrane protein of unknown function.


ensembl_gene_id: Rpdx1_1622
symbol: ADU43240.1
gene_biotype: protein_coding
description:
  PFAM: Mg2 transporter protein CorA family protein; KEGG: bra:BRADO6358 putative divalent cation transporter, CorA-like.


ensembl_gene_id: Rpdx1_1625
symbol: ADU43243.1
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: bja:blr7827 ABC transporter substrate-binding protein.


ensembl_gene_id: Rpdx1_1626
symbol: ADU43244.1
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: bbt:BBta_7080 branched chain amino acid ABC transporter periplasmic-binding protein.


ensembl_gene_id: Rpdx1_1627
symbol: ADU43245.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: bra:BRADO0976 high-affinity branched-chain amino acid ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Rpdx1_1628
symbol: ADU43246.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: bbt:BBta_7078 putative high-affinity branched-chain amino acid transport system permease protein LivH.


ensembl_gene_id: Rpdx1_1629
symbol: ADU43247.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr7824 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_1630
symbol: ADU43248.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr7823 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_1631
symbol: ADU43249.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, IclR family; KEGG: bja:blr7822 transcriptional regulatory protein; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR.


ensembl_gene_id: Rpdx1_1632
symbol: ADU43250.1
gene_biotype: protein_coding
description:
  PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: bja:bll7821 fatty oxidation complex alpha subunit; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: Rpdx1_1634
symbol: ADU43251.1
gene_biotype: protein_coding
description:
  dicarboxylate/CoA ligase PimA; KEGG: bra:BRADO0982 putative long-chain-fatty-acid--CoA ligase; putative long-chain acyl-CoA synthetase; pimeloyl-CoA ligase PimA; TIGRFAM: dicarboxylate/CoA ligase PimA; PFAM: AMP-dependent synthetase and ligase.


ensembl_gene_id: Rpdx1_1635
symbol: ADU43252.1
gene_biotype: protein_coding
description:
  TIGRFAM: acetyl-CoA acetyltransferase; KEGG: bbt:BBta_7072 acetyl-CoA acetyltransferase; PFAM: Thiolase-like; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Rpdx1_1636
symbol: ADU43253.1
gene_biotype: protein_coding
description:
  pimeloyl-CoA dehydrogenase, large subunit; KEGG: bra:BRADO0984 putative acyl-CoA dehydrogenase; pimeloyl-CoA dehydrogenase PimC (large subunit); TIGRFAM: pimeloyl-CoA dehydrogenase, large subunit; PFAM: acyl-CoA dehydrogenase domain protein.


ensembl_gene_id: Rpdx1_1637
symbol: ADU43254.1
gene_biotype: protein_coding
description:
  pimeloyl-CoA dehydrogenase, small subunit; KEGG: bra:BRADO0985 putative acyl-CoA dehydrogenase; pimeloyl-CoA dehydrogenase PimD (small subunit); TIGRFAM: pimeloyl-CoA dehydrogenase, small subunit; PFAM: acyl-CoA dehydrogenase domain protein.


ensembl_gene_id: Rpdx1_1638
symbol: ADU43255.1
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbt:BBta_7068 SDR family dehydrogenase/reductase.


ensembl_gene_id: Rpdx1_1639
symbol: ADU43256.1
gene_biotype: protein_coding
description:
  PFAM: FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: bra:BRADO3794 sulfite reductase.


ensembl_gene_id: Rpdx1_1640
symbol: ADU43257.1
gene_biotype: protein_coding
description:
  precorrin-3B synthase; KEGG: bra:BRADO3793 ferredoxin-nitrite reductase; TIGRFAM: precorrin-3B synthase; PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein.


ensembl_gene_id: Rpdx1_1645
symbol: ADU43262.1
gene_biotype: protein_coding
description:
  PFAM: ANTAR domain protein; response regulator receiver; KEGG: bja:bll4573 two-component response regulator.


ensembl_gene_id: Rpdx1_1646
symbol: glpK
gene_biotype: protein_coding
description:
  Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.


ensembl_gene_id: Rpdx1_1650
symbol: ADU43267.1
gene_biotype: protein_coding
description:
  Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.


ensembl_gene_id: Rpdx1_1652
symbol: ADU43269.1
gene_biotype: protein_coding
description:
  TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: bbt:BBta_7060 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.


ensembl_gene_id: Rpdx1_1653
symbol: ADU43270.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr1420 flavin dependant oxidoreductase; TIGRFAM: luciferase family oxidoreductase, group 1; PFAM: Luciferase-like, subgroup.


ensembl_gene_id: Rpdx1_1655
symbol: kdsB
gene_biotype: protein_coding
description:
  3-deoxy-D-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.


ensembl_gene_id: Rpdx1_1657
symbol: ADU43274.1
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: bbt:BBta_7055 oligopeptide ABC transporter periplasmic substrate-binding protein.


ensembl_gene_id: Rpdx1_1658
symbol: ADU43275.1
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: nha:Nham_0379 extracellular solute-binding protein.


ensembl_gene_id: Rpdx1_1659
symbol: ADU43276.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nha:Nham_0380 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Rpdx1_1660
symbol: ADU43277.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nwi:Nwi_0291 binding-protein dependent transport system inner membrane protein.


ensembl_gene_id: Rpdx1_1661
symbol: ADU43278.1
gene_biotype: protein_coding
description:
  KEGG: nwi:Nwi_0292 ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Rpdx1_1664
symbol: ADU43281.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_0384 leucyl aminopeptidase; manually curated; PFAM: peptidase M17 leucyl aminopeptidase domain protein; Belongs to the peptidase M17 family.


ensembl_gene_id: Rpdx1_1667
symbol: ADU43284.1
gene_biotype: protein_coding
description:
  PFAM: Type II secretion system F domain; KEGG: bra:BRADO1015 putative pilus assembly protein; putative membrane protein.


ensembl_gene_id: Rpdx1_1670
symbol: ADU43287.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_0390 pilus assembly protein CpaD; TIGRFAM: pilus (Caulobacter type) biogenesis lipoprotein CpaD; PFAM: Pilus biogenesis CpaD-related.


ensembl_gene_id: Rpdx1_1671
symbol: ADU43288.1
gene_biotype: protein_coding
description:
  PFAM: type II and III secretion system protein; transport-associated; KEGG: nha:Nham_0391 type II and III secretion system protein; Belongs to the bacterial secretin family.


ensembl_gene_id: Rpdx1_1672
symbol: ADU43289.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_0392 Flp pilus assembly CpaB; TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein.


ensembl_gene_id: Rpdx1_1678
symbol: ADU43295.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_7022 cold-shock DNA-binding protein family protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein.


ensembl_gene_id: Rpdx1_1679
symbol: infA
gene_biotype: protein_coding
description:
  Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.


ensembl_gene_id: Rpdx1_1680
symbol: ADU43297.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_0400 DEAD/DEAH box helicase-like; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; Belongs to the DEAD box helicase family.


ensembl_gene_id: Rpdx1_1681
symbol: ADU43298.1
gene_biotype: protein_coding
description:
  TIGRFAM: urea ABC transporter, urea binding protein; KEGG: bra:BRADO1031 branched chain amino-acid ABC transporter substrate-binding protein.


ensembl_gene_id: Rpdx1_1682
symbol: ADU43299.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr1449 ABC transporter permease protein; TIGRFAM: urea ABC transporter, permease protein UrtB; PFAM: inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Rpdx1_1683
symbol: ADU43300.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr1450 ABC transporter permease protein; TIGRFAM: urea ABC transporter, permease protein UrtC; PFAM: inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Rpdx1_1684
symbol: ADU43301.1
gene_biotype: protein_coding
description:
  TIGRFAM: urea ABC transporter, ATP-binding protein UrtD; PFAM: ABC transporter related; KEGG: bbt:BBta_7015 putative branched-chain amino acid ABC transporter ATP-binding protein; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_1685
symbol: ADU43302.1
gene_biotype: protein_coding
description:
  TIGRFAM: urea ABC transporter, ATP-binding protein UrtE; PFAM: ABC transporter related; KEGG: bbt:BBta_7014 putative branched-chain amino acid ABC transporter ATP-binding protein; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_1686
symbol: ureD
gene_biotype: protein_coding
description:
  Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.


ensembl_gene_id: Rpdx1_1687
symbol: ureA
gene_biotype: protein_coding
description:
  TIGRFAM: urease, gamma subunit; KEGG: sme:SMc01941 urease subunit gamma; PFAM: Urease gamma subunit region; Belongs to the urease gamma subunit family.


ensembl_gene_id: Rpdx1_1688
symbol: ureB
gene_biotype: protein_coding
description:
  TIGRFAM: urease, beta subunit; KEGG: bbt:BBta_7011 urease subunit beta; PFAM: Urease beta subunit; Belongs to the urease beta subunit family.


ensembl_gene_id: Rpdx1_1689
symbol: ureC
gene_biotype: protein_coding
description:
  TIGRFAM: urease, alpha subunit; KEGG: bja:blr1457 urease subunit alpha; PFAM: amidohydrolase; Urease alpha-subunit domain protein.


ensembl_gene_id: Rpdx1_1691
symbol: ureE
gene_biotype: protein_coding
description:
  UreE urease accessory domain protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.


ensembl_gene_id: Rpdx1_1692
symbol: ureF
gene_biotype: protein_coding
description:
  Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.


ensembl_gene_id: Rpdx1_1695
symbol: ADU43312.1
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: bja:blr2780 NAD-dependent alcohol dehydrogenase.


ensembl_gene_id: Rpdx1_1696
symbol: mobA
gene_biotype: protein_coding
description:
  Molybdopterin-guanine dinucleotide biosynthesis protein A; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor; Belongs to the MobA family.


ensembl_gene_id: Rpdx1_1697
symbol: ADU43314.1
gene_biotype: protein_coding
description:
  PFAM: SirA family protein; KEGG: bja:bsr2313 hypothetical protein; Belongs to the sulfur carrier protein TusA family.


ensembl_gene_id: Rpdx1_1701
symbol: ADU43318.1
gene_biotype: protein_coding
description:
  DNA ligase D; KEGG: bja:bll6773 ATP-dependent DNA ligase; TIGRFAM: DNA ligase D; DNA polymerase LigD, ligase domain protein; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, polymerase domain protein; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; DNA primase small subunit.


ensembl_gene_id: Rpdx1_1704
symbol: ADU43321.1
gene_biotype: protein_coding
description:
  Malto-oligosyltrehalose synthase; SMART: alpha amylase catalytic sub domain; TIGRFAM: malto-oligosyltrehalose synthase; KEGG: bra:BRADO5820 putative glycosyl hydrolase (glycosidase); PFAM: alpha amylase catalytic region.


ensembl_gene_id: Rpdx1_1705
symbol: ADU43322.1
gene_biotype: protein_coding
description:
  TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein; KEGG: bbt:BBta_6325 putative maltooligosyltrehalose trehalohydrolase; SMART: alpha amylase catalytic sub domain.


ensembl_gene_id: Rpdx1_1706
symbol: ADU43323.1
gene_biotype: protein_coding
description:
  TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; KEGG: bja:blr6769 glycogen debranching enzyme; SMART: alpha amylase catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.


ensembl_gene_id: Rpdx1_1707
symbol: glgB
gene_biotype: protein_coding
description:
  1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.


ensembl_gene_id: Rpdx1_1708
symbol: ADU43325.1
gene_biotype: protein_coding
description:
  TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase catalytic region; aminoglycoside phosphotransferase; KEGG: bja:blr6767 trehalose synthase; SMART: alpha amylase catalytic sub domain.


ensembl_gene_id: Rpdx1_1709
symbol: glgE
gene_biotype: protein_coding
description:
  Alpha amylase catalytic region; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.


ensembl_gene_id: Rpdx1_1710
symbol: ADU43327.1
gene_biotype: protein_coding
description:
  TIGRFAM: 4-alpha-glucanotransferase; KEGG: bra:BRADO5815 putative 4-alpha-glucanotransferase (MalQ-like); PFAM: glycoside hydrolase family 77.


ensembl_gene_id: Rpdx1_1712
symbol: ADU43329.1
gene_biotype: protein_coding
description:
  Cof-like hydrolase; KEGG: bja:blr6763 hypothetical protein; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3.


ensembl_gene_id: Rpdx1_1713
symbol: ADU43330.1
gene_biotype: protein_coding
description:
  TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; KEGG: bra:BRADO5812 putative bifunctional: 6-phosphogluconolactonase (N-terminal) (Pgl); D-gluconate kinase (C-terminal); PFAM: shikimate kinase.


ensembl_gene_id: Rpdx1_1715
symbol: zwf
gene_biotype: protein_coding
description:
  Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.


ensembl_gene_id: Rpdx1_1716
symbol: ADU43333.1
gene_biotype: protein_coding
description:
  6-phosphogluconate dehydrogenase, decarboxylating; KEGG: bbt:BBta_6316 6-phosphogluconate dehydrogenase-like protein; TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 6-phosphogluconate dehydrogenase domain protein.


ensembl_gene_id: Rpdx1_1717
symbol: tal
gene_biotype: protein_coding
description:
  Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.


ensembl_gene_id: Rpdx1_1718
symbol: ADU43335.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_6305 proline iminopeptidase; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; Belongs to the peptidase S33 family.


ensembl_gene_id: Rpdx1_1721
symbol: ADU43338.1
gene_biotype: protein_coding
description:
  Peroxiredoxin; KEGG: bra:BRADO5788 glutathione peroxidase; PFAM: glutathione peroxidase; Belongs to the glutathione peroxidase family.


ensembl_gene_id: Rpdx1_1723
symbol: ADU43340.1
gene_biotype: protein_coding
description:
  PFAM: Excinuclease ABC C subunit domain protein; KEGG: oca:OCAR_7056 excinuclease ABC, C subunit domain protein.


ensembl_gene_id: Rpdx1_1728
symbol: ADU43345.1
gene_biotype: protein_coding
description:
  PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: bja:blr2392 putative dioxygenase subunit.


ensembl_gene_id: Rpdx1_1729
symbol: ADU43346.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr2391 transcriptional regulatory protein; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.


ensembl_gene_id: Rpdx1_1730
symbol: ADU43347.1
gene_biotype: protein_coding
description:
  PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: bja:blr2390 vanillate O-demethylase oxygenase subunit.


ensembl_gene_id: Rpdx1_1732
symbol: ADU43349.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_6260 ATPase; PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_1734
symbol: ADU43351.1
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; KEGG: bja:bll1362 hypothetical protein; SMART: GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein.


ensembl_gene_id: Rpdx1_1736
symbol: ADU43353.1
gene_biotype: protein_coding
description:
  Rhodanese domain protein; KEGG: bbt:BBta_6257 hypothetical protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein.


ensembl_gene_id: Rpdx1_1737
symbol: ADU43354.1
gene_biotype: protein_coding
description:
  Rhodanese domain protein; KEGG: nha:Nham_2916 3-mercaptopyruvate sulfurtransferase; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein.


ensembl_gene_id: Rpdx1_1741
symbol: ADU43358.1
gene_biotype: protein_coding
description:
  KAP P-loop domain protein; KEGG: gsu:GSU0709 hypothetical protein; manually curated; PFAM: KAP P-loop domain protein.


ensembl_gene_id: Rpdx1_1742
symbol: ADU43359.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_6251 putative ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_1744
symbol: ADU43361.1
gene_biotype: protein_coding
description:
  KEGG: sme:SMc02658 hypothetical protein; TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein.


ensembl_gene_id: Rpdx1_1745
symbol: tam
gene_biotype: protein_coding
description:
  Trans-aconitate 2-methyltransferase; Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate.


ensembl_gene_id: Rpdx1_1747
symbol: ADU43364.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll6684 transglycosylase; TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein.


ensembl_gene_id: Rpdx1_1750
symbol: ADU43367.1
gene_biotype: protein_coding
description:
  PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: bbt:BBta_6243 putative bacterioferritin-associated ferredoxin.


ensembl_gene_id: Rpdx1_1751
symbol: ADU43368.1
gene_biotype: protein_coding
description:
  Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.


ensembl_gene_id: Rpdx1_1753
symbol: ADU43370.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_2901 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer.


ensembl_gene_id: Rpdx1_1761
symbol: ADU43377.1
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: bvi:Bcep1808_5397 L-carnitine dehydratase/bile acid-inducible protein F.


ensembl_gene_id: Rpdx1_1762
symbol: ADU43378.1
gene_biotype: protein_coding
description:
  PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: bbt:BBta_7587 hypothetical protein.


ensembl_gene_id: Rpdx1_1777
symbol: thiC
gene_biotype: protein_coding
description:
  Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction.


ensembl_gene_id: Rpdx1_1778
symbol: ADU43392.1
gene_biotype: protein_coding
description:
  Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP).


ensembl_gene_id: Rpdx1_1779
symbol: thiG
gene_biotype: protein_coding
description:
  Thiazole biosynthesis family protein; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.


ensembl_gene_id: Rpdx1_1781
symbol: ADU43394.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_6223 thiamine biosynthesis protein ThiS; TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein.


ensembl_gene_id: Rpdx1_1783
symbol: ADU43396.1
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; KEGG: bbt:BBta_6217 putative two component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein.


ensembl_gene_id: Rpdx1_1784
symbol: ADU43397.1
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; KEGG: bbt:BBta_6216 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.


ensembl_gene_id: Rpdx1_1790
symbol: ADU43403.1
gene_biotype: protein_coding
description:
  Tryptophanase; KEGG: tmz:Tmz1t_1789 tryptophanase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase.


ensembl_gene_id: Rpdx1_1793
symbol: ADU43406.1
gene_biotype: protein_coding
description:
  Regulatory protein ArsR; KEGG: sus:Acid_4411 ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; regulatory protein Crp.


ensembl_gene_id: Rpdx1_1794
symbol: ADU43407.1
gene_biotype: protein_coding
description:
  KEGG: xau:Xaut_3418 regulatory protein ArsR; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR.


ensembl_gene_id: Rpdx1_1798
symbol: ADU43411.1
gene_biotype: protein_coding
description:
  KEGG: oca:OCAR_7747 transcriptional regulator, ArsR family; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight.


ensembl_gene_id: Rpdx1_1799
symbol: ADU43412.1
gene_biotype: protein_coding
description:
  KEGG: oca:OCAR_4231 arsenate reductase; TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related.


ensembl_gene_id: Rpdx1_1800
symbol: ADU43413.1
gene_biotype: protein_coding
description:
  KEGG: oca:OCAR_4230 arsenical-resistance protein; TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter.


ensembl_gene_id: Rpdx1_1801
symbol: ADU43414.1
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: azl:AZL_b01550 3-oxoacyl-[acyl-carrier-protein] reductase.


ensembl_gene_id: Rpdx1_1802
symbol: ADU43415.1
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sus:Acid_2708 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Rpdx1_1803
symbol: ADU43416.1
gene_biotype: protein_coding
description:
  KEGG: dol:Dole_1742 radical SAM domain-containing protein; PFAM: Radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: Rpdx1_1804
symbol: ADU43417.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll0962 phosphoglycolate phosphatase; TIGRFAM: HAD-superfamily hydrolase, phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase.


ensembl_gene_id: Rpdx1_1805
symbol: ADU43418.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_3087 outer membrane autotransporter barrel; TIGRFAM: outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; polymorphic outer membrane protein; PFAM: Autotransporter beta- domain protein.


ensembl_gene_id: Rpdx1_1807
symbol: ADU43420.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO0729 putative methyl-accepting chemotaxis protein (chemoreceptor); PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.


ensembl_gene_id: Rpdx1_1810
symbol: ADU43423.1
gene_biotype: protein_coding
description:
  PFAM: secretion protein HlyD family protein; KEGG: bbt:BBta_6188 putative multidrug resistance protein A.


ensembl_gene_id: Rpdx1_1811
symbol: ADU43424.1
gene_biotype: protein_coding
description:
  Drug resistance transporter, EmrB/QacA subfamily; KEGG: bbt:BBta_6187 putative multidrug resistance protein B; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1.


ensembl_gene_id: Rpdx1_1813
symbol: ADU43426.1
gene_biotype: protein_coding
description:
  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; KEGG: bja:blr6611 amidase; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; Peptidoglycan-binding domain 1 protein; SMART: N-acetylmuramoyl-L-alanine amidase family 2.


ensembl_gene_id: Rpdx1_1814
symbol: rsmH
gene_biotype: protein_coding
description:
  S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.


ensembl_gene_id: Rpdx1_1816
symbol: ADU43429.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_1273 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain.


ensembl_gene_id: Rpdx1_1817
symbol: murE
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramyl-tripeptide synthetase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.


ensembl_gene_id: Rpdx1_1818
symbol: murF
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.


ensembl_gene_id: Rpdx1_1819
symbol: mraY
gene_biotype: protein_coding
description:
  phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.


ensembl_gene_id: Rpdx1_1820
symbol: murD
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoylalanine/D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.


ensembl_gene_id: Rpdx1_1821
symbol: ADU43434.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll6603 cell division protein; TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; Belongs to the SEDS family.


ensembl_gene_id: Rpdx1_1822
symbol: murG
gene_biotype: protein_coding
description:
  Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.


ensembl_gene_id: Rpdx1_1828
symbol: ADU43441.1
gene_biotype: protein_coding
description:
  D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.


ensembl_gene_id: Rpdx1_1830
symbol: ftsQ
gene_biotype: protein_coding
description:
  Cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.


ensembl_gene_id: Rpdx1_1831
symbol: ftsA
gene_biotype: protein_coding
description:
  Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.


ensembl_gene_id: Rpdx1_1832
symbol: ftsZ
gene_biotype: protein_coding
description:
  Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.


ensembl_gene_id: Rpdx1_1833
symbol: lpxC
gene_biotype: protein_coding
description:
  UDP-3-0-acyl N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.


ensembl_gene_id: Rpdx1_1834
symbol: bamD
gene_biotype: protein_coding
description:
  Outer membrane assembly lipoprotein YfiO; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: Rpdx1_1836
symbol: ADU43448.1
gene_biotype: protein_coding
description:
  KEGG: bja:bsr6592 hypothetical protein; PFAM: Excinuclease ABC C subunit domain protein; SMART: Excinuclease ABC C subunit domain protein.


ensembl_gene_id: Rpdx1_1837
symbol: ligA
gene_biotype: protein_coding
description:
  DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily.


ensembl_gene_id: Rpdx1_1838
symbol: ADU43450.1
gene_biotype: protein_coding
description:
  Drug resistance transporter, Bcr/CflA subfamily; KEGG: bja:blr6590 major facilitator superfamily transporter; TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1.


ensembl_gene_id: Rpdx1_1841
symbol: prmA
gene_biotype: protein_coding
description:
  Ribosomal L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.


ensembl_gene_id: Rpdx1_1848
symbol: ADU43460.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_6149 putative ABC transporter (ATP binding protein); PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_1857
symbol: fumC
gene_biotype: protein_coding
description:
  Fumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.


ensembl_gene_id: Rpdx1_1864
symbol: thyA
gene_biotype: protein_coding
description:
  Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis.


ensembl_gene_id: Rpdx1_1866
symbol: ADU43478.1
gene_biotype: protein_coding
description:
  Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.


ensembl_gene_id: Rpdx1_1870
symbol: ADU43482.1
gene_biotype: protein_coding
description:
  SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: protease Do; KEGG: bbt:BBta_6094 putative serine protease do-like precursor; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; Belongs to the peptidase S1C family.


ensembl_gene_id: Rpdx1_1871
symbol: rsmJ
gene_biotype: protein_coding
description:
  Protein of unknown function DUF548; Specifically methylates the guanosine in position 1516 of 16S rRNA.


ensembl_gene_id: Rpdx1_1872
symbol: ADU43484.1
gene_biotype: protein_coding
description:
  PFAM: Extracellular solute-binding protein, family 7; Twin-arginine translocation pathway, signal sequence, subgroup; KEGG: hch:HCH_00744 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component.


ensembl_gene_id: Rpdx1_1873
symbol: ADU43485.1
gene_biotype: protein_coding
description:
  PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: aco:Amico_0458 tripartite ATP-independent periplasmic transporter DctQ component.


ensembl_gene_id: Rpdx1_1874
symbol: ADU43486.1
gene_biotype: protein_coding
description:
  KEGG: aco:Amico_0459 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit.


ensembl_gene_id: Rpdx1_1875
symbol: ADU43487.1
gene_biotype: protein_coding
description:
  PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: vei:Veis_3863 formyl-CoA transferase; Belongs to the CoA-transferase III family.


ensembl_gene_id: Rpdx1_1877
symbol: ADU43489.1
gene_biotype: protein_coding
description:
  KEGG: aat:D11S_0470 HI0074 family nucleotidyltransferase substrate binding protein; TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; PFAM: Nucleotidyltransferase substrate binding protein HI0074.


ensembl_gene_id: Rpdx1_1879
symbol: ADU43491.1
gene_biotype: protein_coding
description:
  PFAM: Integrase catalytic region; KEGG: ret:RHE_PD00004 putative insertion sequence transposase protein.


ensembl_gene_id: Rpdx1_1880
symbol: ADU43492.1
gene_biotype: protein_coding
description:
  PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: mdi:METDI0840 putative phage integrase; Belongs to the 'phage' integrase family.


ensembl_gene_id: Rpdx1_1891
symbol: ADU43503.1
gene_biotype: protein_coding
description:
  PFAM: acriflavin resistance protein; KEGG: nha:Nham_1509 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: Rpdx1_1892
symbol: ADU43504.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_1510 secretion protein HlyD; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Rpdx1_1894
symbol: ADU43506.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_1513 TonB-dependent receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor.


ensembl_gene_id: Rpdx1_1895
symbol: ADU43507.1
gene_biotype: protein_coding
description:
  2OG-Fe(II) oxygenase; KEGG: bja:blr3905 putative hydroxylase; PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit.


ensembl_gene_id: Rpdx1_1896
symbol: ADU43508.1
gene_biotype: protein_coding
description:
  tonB-system energizer ExbB; KEGG: bja:blr3906 biopolymer transport protein; TIGRFAM: tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel.


ensembl_gene_id: Rpdx1_1897
symbol: ADU43509.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_1516 biopolymer transport protein ExbD/TolR; TIGRFAM: TonB system transport protein ExbD; PFAM: Biopolymer transport protein ExbD/TolR.


ensembl_gene_id: Rpdx1_1900
symbol: ADU43512.1
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbt:BBta_3549 3-oxoacyl-acyl carrier protein reductase.


ensembl_gene_id: Rpdx1_1901
symbol: ADU43513.1
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bra:BRADO3102 putative 3-oxoacyl-[acyl-carrier-protein] reductase.


ensembl_gene_id: Rpdx1_1902
symbol: ADU43514.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_3551 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; Belongs to the IlvD/Edd family.


ensembl_gene_id: Rpdx1_1903
symbol: ADU43515.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO3105 ABC transporter ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Rpdx1_1904
symbol: ADU43516.1
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: bra:BRADO3106 putative ABC transporter periplasmic-binding protein.


ensembl_gene_id: Rpdx1_1905
symbol: ADU43517.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_3555 putative ABC transporter permease protein.


ensembl_gene_id: Rpdx1_1906
symbol: ADU43518.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_3556 putative ABC transporter permease protein.


ensembl_gene_id: Rpdx1_1908
symbol: ADU43520.1
gene_biotype: protein_coding
description:
  PFAM: Thiolase-like; KEGG: bra:BRADO3110 acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Rpdx1_1911
symbol: ADU43523.1
gene_biotype: protein_coding
description:
  PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bbt:BBta_3565 putative formyl-CoA transferase; Belongs to the CoA-transferase III family.


ensembl_gene_id: Rpdx1_1916
symbol: ADU43527.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll3936 hypothetical protein; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit.


ensembl_gene_id: Rpdx1_1918
symbol: ADU43529.1
gene_biotype: protein_coding
description:
  PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: bja:bsl3938 putative biotinylated protein.


ensembl_gene_id: Rpdx1_1919
symbol: ADU43530.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_3572 IclR family transcriptional regulator; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR.


ensembl_gene_id: Rpdx1_1920
symbol: ADU43531.1
gene_biotype: protein_coding
description:
  Carboxyl transferase; KEGG: bja:blr3940 putative propionyl-CoA carboxylase beta chain; manually curated; PFAM: carboxyl transferase.


ensembl_gene_id: Rpdx1_1925
symbol: ADU43536.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO3137 methylmalonate-semialdehyde dehydrogenase; TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase.


ensembl_gene_id: Rpdx1_1927
symbol: vapC-3
gene_biotype: protein_coding
description:
  PilT domain-containing protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.


ensembl_gene_id: Rpdx1_1930
symbol: ADU43541.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_3581 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; Belongs to the HIBADH-related family.


ensembl_gene_id: Rpdx1_1934
symbol: ADU43545.1
gene_biotype: protein_coding
description:
  TIGRFAM: amidohydrolase; KEGG: bbt:BBta_5260 putative amidohydrolase family protein; PFAM: peptidase M20; peptidase dimerisation domain protein.


ensembl_gene_id: Rpdx1_1936
symbol: ADU43547.1
gene_biotype: protein_coding
description:
  PFAM: filamentation induced by cAMP protein Fic; KEGG: bbt:BBta_p0025 putative cAMP-induced filamentation protein.


ensembl_gene_id: Rpdx1_1947
symbol: ADU43558.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_5231 serine O-acetyltransferase; TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein.


ensembl_gene_id: Rpdx1_1954
symbol: ADU43565.1
gene_biotype: protein_coding
description:
  Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.


ensembl_gene_id: Rpdx1_1955
symbol: ADU43566.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; KEGG: bja:blr4984 transcriptional regulatory protein; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.


ensembl_gene_id: Rpdx1_1958
symbol: rpsU
gene_biotype: protein_coding
description:
  KEGG: bja:blr0365 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.


ensembl_gene_id: Rpdx1_1965
symbol: ADU43576.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll5551 hypothetical protein; PFAM: CBS domain containing protein; SMART: CBS domain containing protein.


ensembl_gene_id: Rpdx1_1972
symbol: ADU43582.1
gene_biotype: protein_coding
description:
  Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: bja:bll5542 hypothetical protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein.


ensembl_gene_id: Rpdx1_1976
symbol: ADU43585.1
gene_biotype: protein_coding
description:
  Putative transcription regulator with HTH domain; KEGG: neu:NE1587 helix-hairpin-helix DNA-binding motif-containing protein.


ensembl_gene_id: Rpdx1_1977
symbol: thrS
gene_biotype: protein_coding
description:
  threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).


ensembl_gene_id: Rpdx1_1978
symbol: ADU43587.1
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: bja:bll5536 major facilitator superfamily transporter.


ensembl_gene_id: Rpdx1_1985
symbol: ADU43594.1
gene_biotype: protein_coding
description:
  KEGG: nwi:Nwi_2375 cold-shock protein, DNA-binding; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein.


ensembl_gene_id: Rpdx1_1988
symbol: ADU43597.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.


ensembl_gene_id: Rpdx1_1991
symbol: folE
gene_biotype: protein_coding
description:
  TIGRFAM: GTP cyclohydrolase I; KEGG: bja:bll5522 GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase.


ensembl_gene_id: Rpdx1_1992
symbol: hisI
gene_biotype: protein_coding
description:
  Phosphoribosyl-AMP cyclohydrolase; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.


ensembl_gene_id: Rpdx1_1995
symbol: ADU43604.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mpo:Mpop_1559 transcriptional regulator, LysR family.


ensembl_gene_id: Rpdx1_1996
symbol: ADU43605.1
gene_biotype: protein_coding
description:
  PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: azc:AZC_3883 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.


ensembl_gene_id: Rpdx1_1999
symbol: ADU43608.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pnu:Pnuc_1186 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Rpdx1_2002
symbol: ADU43611.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr5517 two-component response regulator; PFAM: response regulator receiver; SMART: response regulator receiver.


ensembl_gene_id: Rpdx1_2005
symbol: nadK
gene_biotype: protein_coding
description:
  ATP-NAD/AcoX kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.


ensembl_gene_id: Rpdx1_2014
symbol: ADU43623.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF1036; KEGG: syf:Synpcc7942_1587 integral membrane protein-like; manually curated; PFAM: protein of unknown function DUF1036.


ensembl_gene_id: Rpdx1_2020
symbol: ADU43628.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_2508 RNA methyltransferase TrmH, group 3; TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: Rpdx1_2023
symbol: ADU43631.1
gene_biotype: protein_coding
description:
  PFAM: polysaccharide export protein; Soluble ligand binding domain; KEGG: bbt:BBta_1028 putative capsule polysaccharide export outer membrane protein.


ensembl_gene_id: Rpdx1_2024
symbol: ADU43632.1
gene_biotype: protein_coding
description:
  PFAM: O-antigen polymerase; KEGG: bbt:BBta_1029 putative O-antigen polymerase, putative membrane protein.


ensembl_gene_id: Rpdx1_2027
symbol: ADU43635.1
gene_biotype: protein_coding
description:
  Undecaprenyl-phosphate galactose phosphotransferase; KEGG: bra:BRADO4757 exopolysaccharide production protein ExoY; PFAM: sugar transferase.


ensembl_gene_id: Rpdx1_2029
symbol: ADU43637.1
gene_biotype: protein_coding
description:
  Capsular exopolysaccharide family; KEGG: bbt:BBta_1034 putative tyrosine-protein kinase injvolved in exopolysaccharide polymerization; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.


ensembl_gene_id: Rpdx1_2032
symbol: ADU43640.1
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase group 1; KEGG: bbt:BBta_1037 putative glycosyltransferase group 1 family protein.


ensembl_gene_id: Rpdx1_2033
symbol: ADU43641.1
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 25; KEGG: mpt:Mpe_A0728 glycosyltransferase involved in LPS biosynthesis-like protein.


ensembl_gene_id: Rpdx1_2034
symbol: ADU43642.1
gene_biotype: protein_coding
description:
  PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: mes:Meso_2584 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: Rpdx1_2038
symbol: ADU43646.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_1042 putative glycosyl transferase group 1; manually curated; PFAM: glycosyl transferase group 1.


ensembl_gene_id: Rpdx1_2040
symbol: ADU43648.1
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; GMC oxidoreductase; KEGG: mes:Meso_2585 glucose-methanol-choline oxidoreductase.


ensembl_gene_id: Rpdx1_2044
symbol: ADU43652.1
gene_biotype: protein_coding
description:
  KEGG: bph:Bphy_1672 amino acid adenylation domain-containing protein; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding.


ensembl_gene_id: Rpdx1_2045
symbol: ADU43653.1
gene_biotype: protein_coding
description:
  KEGG: bid:Bind_0846 amino acid adenylation domain-containing protein; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Beta-ketoacyl synthase; Acyl transferase; phosphopantetheine-binding; aminotransferase class-III; condensation domain protein; Belongs to the ATP-dependent AMP-binding enzyme family.


ensembl_gene_id: Rpdx1_2046
symbol: ADU43654.1
gene_biotype: protein_coding
description:
  PFAM: condensation domain protein; Thioesterase; KEGG: bph:Bphy_1673 condensation domain-containing protein.


ensembl_gene_id: Rpdx1_2047
symbol: ADU43655.1
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: msl:Msil_1245 platelet-activating factor acetylhydrolase plasma/intracellular isoform II.


ensembl_gene_id: Rpdx1_2048
symbol: ADU43656.1
gene_biotype: protein_coding
description:
  PFAM: 4'-phosphopantetheinyl transferase; KEGG: mrd:Mrad2831_0013 4'-phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily.


ensembl_gene_id: Rpdx1_2052
symbol: ADU43660.1
gene_biotype: protein_coding
description:
  KEGG: mpo:Mpop_0030 curli production assembly/transport component CsgG; manually curated; PFAM: Curli production assembly/transport component CsgG.


ensembl_gene_id: Rpdx1_2053
symbol: ADU43661.1
gene_biotype: protein_coding
description:
  PFAM: Curli production assembly/transport component CsgF; KEGG: pen:PSEEN2838 curli production assembly/transport component CsgF precursor.


ensembl_gene_id: Rpdx1_2057
symbol: ADU43665.1
gene_biotype: protein_coding
description:
  Helix-turn-helix domain protein; KEGG: sli:Slin_5326 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.


ensembl_gene_id: Rpdx1_2062
symbol: ADU43670.1
gene_biotype: protein_coding
description:
  TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: nwi:Nwi_1075 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Belongs to the mannose-6-phosphate isomerase type 2 family.


ensembl_gene_id: Rpdx1_2063
symbol: ADU43671.1
gene_biotype: protein_coding
description:
  Phosphomannomutase; KEGG: bra:BRADO0757 putative phosphomannomutase/phosphoglucomutase (PMM / PGM); PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase.


ensembl_gene_id: Rpdx1_2066
symbol: ADU43674.1
gene_biotype: protein_coding
description:
  KEGG: mea:Mex_1p5255 serine protease; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein.


ensembl_gene_id: Rpdx1_2068
symbol: ADU43676.1
gene_biotype: protein_coding
description:
  KEGG: mpo:Mpop_2641 transglutaminase domain protein; PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein.


ensembl_gene_id: Rpdx1_2069
symbol: ADU43677.1
gene_biotype: protein_coding
description:
  TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; KEGG: msl:Msil_3793 glycogen debranching enzyme GlgX; SMART: alpha amylase catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.


ensembl_gene_id: Rpdx1_2073
symbol: ADU43681.1
gene_biotype: protein_coding
description:
  AAA ATPase central domain protein; KEGG: rhi:NGR_c22390 putative ATP-dependent hydrolase protein; PFAM: AAA ATPase central domain protein; peptidase M41; SMART: AAA ATPase; Belongs to the AAA ATPase family.


ensembl_gene_id: Rpdx1_2075
symbol: ADU43683.1
gene_biotype: protein_coding
description:
  Manually curated; PFAM: helix-turn-helix domain protein; KEGG: mno:Mnod_7736 transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein.


ensembl_gene_id: Rpdx1_2078
symbol: ADU43685.1
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase-like protein; KEGG: azl:AZL_d04780 similar to UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase.


ensembl_gene_id: Rpdx1_2081
symbol: ADU43688.1
gene_biotype: protein_coding
description:
  PFAM: RTX domain protein; Hemolysin-type calcium-binding region; KEGG: mlo:mll1028 rhizobiocin RzcA.


ensembl_gene_id: Rpdx1_2082
symbol: ADU43689.1
gene_biotype: protein_coding
description:
  TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; KEGG: mlo:mll1027 rhizobiocin secretion protein RspD; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_2083
symbol: ADU43690.1
gene_biotype: protein_coding
description:
  KEGG: mpo:Mpop_2544 type I secretion membrane fusion protein, HlyD family; TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein.


ensembl_gene_id: Rpdx1_2085
symbol: ADU43691.1
gene_biotype: protein_coding
description:
  Autoinducer-binding domain protein; KEGG: nwi:Nwi_0627 LuxR family transcriptional regulator; PFAM: Autoinducer-binding domain protein; regulatory protein LuxR; SMART: regulatory protein LuxR.


ensembl_gene_id: Rpdx1_2094
symbol: ADU43698.1
gene_biotype: protein_coding
description:
  PFAM: transposase IS3/IS911 family protein; KEGG: oan:Oant_4528 transposase IS3/IS911 family protein.


ensembl_gene_id: Rpdx1_2114
symbol: ADU43712.1
gene_biotype: protein_coding
description:
  PFAM: UvrD/REP helicase; protein of unknown function DUF955; KEGG: sjp:SJA_C1-20360 putative ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily.


ensembl_gene_id: Rpdx1_2116
symbol: ADU43714.1
gene_biotype: protein_coding
description:
  PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: sjp:SJA_C1-20380 UBA/ThiF-type NAD/FAD binding fold protein.


ensembl_gene_id: Rpdx1_2119
symbol: ADU43717.1
gene_biotype: protein_coding
description:
  KEGG: scb:SCAB_29231 putative helicase; PFAM: DEAD/DEAH box helicase domain protein; peptidase C14 caspase catalytic subunit p20; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.


ensembl_gene_id: Rpdx1_2121
symbol: ADU43719.1
gene_biotype: protein_coding
description:
  PFAM: MaoC domain protein dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: ttu:TERTU_2202 modular polyketide synthase, type I PKS.


ensembl_gene_id: Rpdx1_2125
symbol: ADU43723.1
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 28; Glycosyltransferase 28 domain; KEGG: cth:Cthe_1905 glycosyl transferase family protein.


ensembl_gene_id: Rpdx1_2126
symbol: ADU43724.1
gene_biotype: protein_coding
description:
  KEGG: sus:Acid_4716 FkbH like protein; TIGRFAM: FkbH like protein; HAD-superfamily phosphatase, subfamily IIIC; PFAM: phosphopantetheine-binding.


ensembl_gene_id: Rpdx1_2129
symbol: ADU43726.1
gene_biotype: protein_coding
description:
  YD repeat protein; Manually curated; TIGRFAM: YD repeat protein; KEGG: cja:CJA_2623 rhs family protein; PFAM: YD repeat-containing protein.


ensembl_gene_id: Rpdx1_2131
symbol: ADU43728.1
gene_biotype: protein_coding
description:
  PFAM: integrase family protein; KEGG: msl:Msil_2093 integrase family protein; Belongs to the 'phage' integrase family.


ensembl_gene_id: Rpdx1_2132
symbol: ADU43729.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_3799 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase.


ensembl_gene_id: Rpdx1_2134
symbol: ADU43731.1
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pla:Plav_0158 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Rpdx1_2137
symbol: ADU43734.1
gene_biotype: protein_coding
description:
  PFAM: Thiolase-like; KEGG: mpt:Mpe_A0178 lipid-transfer protein; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Rpdx1_2139
symbol: ADU43736.1
gene_biotype: protein_coding
description:
  AMP-dependent synthetase and ligase; KEGG: ctt:CtCNB1_1709 long-chain-fatty-acid--CoA ligase; manually curated; PFAM: AMP-dependent synthetase and ligase.


ensembl_gene_id: Rpdx1_2141
symbol: ADU43738.1
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: dsh:Dshi_1404 branched-chain amino acid ABC transporter.


ensembl_gene_id: Rpdx1_2142
symbol: ADU43739.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: sit:TM1040_1512 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Rpdx1_2143
symbol: ADU43740.1
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: sit:TM1040_1513 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Rpdx1_2149
symbol: ADU43745.1
gene_biotype: protein_coding
description:
  PFAM: aminoglycoside phosphotransferase; KEGG: bra:BRADO3036 putative aminoglycoside phosphotransferase.


ensembl_gene_id: Rpdx1_2150
symbol: ADU43746.1
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bra:BRADO3041 putative short-chain dehydrogenase/reductase SDR family protein.


ensembl_gene_id: Rpdx1_2152
symbol: ADU43748.1
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bra:BRADO3043 putative short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Rpdx1_2154
symbol: tuf
gene_biotype: protein_coding
description:
  Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.


ensembl_gene_id: Rpdx1_2157
symbol: ADU43753.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_3719 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.


ensembl_gene_id: Rpdx1_2158
symbol: secE
gene_biotype: protein_coding
description:
  Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.


ensembl_gene_id: Rpdx1_2159
symbol: nusG
gene_biotype: protein_coding
description:
  NusG antitermination factor; Participates in transcription elongation, termination and antitermination.


ensembl_gene_id: Rpdx1_2160
symbol: rplK
gene_biotype: protein_coding
description:
  Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.


ensembl_gene_id: Rpdx1_2161
symbol: rplA
gene_biotype: protein_coding
description:
  Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.


ensembl_gene_id: Rpdx1_2162
symbol: ADU43758.1
gene_biotype: protein_coding
description:
  PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: bra:BRADO3050 putative glyoxylate reductase (glycolate reductase).


ensembl_gene_id: Rpdx1_2163
symbol: rplJ
gene_biotype: protein_coding
description:
  Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.


ensembl_gene_id: Rpdx1_2164
symbol: rplL
gene_biotype: protein_coding
description:
  Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.


ensembl_gene_id: Rpdx1_2165
symbol: rpoB
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: Rpdx1_2166
symbol: rpoC
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: Rpdx1_2167
symbol: ADU43763.1
gene_biotype: protein_coding
description:
  Amine oxidase; KEGG: bbt:BBta_5079 hypothetical protein; manually curated; PFAM: amine oxidase; Methyltransferase type 11.


ensembl_gene_id: Rpdx1_2168
symbol: ADU43764.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_5078 putative ABC transporter, ATPase and permease components; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_2169
symbol: ADU43765.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_3666 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.


ensembl_gene_id: Rpdx1_2170
symbol: ADU43766.1
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smd:Smed_5280 3-demethylubiquinone-9 3-methyltransferase.


ensembl_gene_id: Rpdx1_2175
symbol: ADU43769.1
gene_biotype: protein_coding
description:
  KEGG: msl:Msil_0885 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; SMART: Helix-turn-helix, AraC domain.


ensembl_gene_id: Rpdx1_2178
symbol: rpsL
gene_biotype: protein_coding
description:
  Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.


ensembl_gene_id: Rpdx1_2179
symbol: rpsG
gene_biotype: protein_coding
description:
  Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.


ensembl_gene_id: Rpdx1_2180
symbol: fusA
gene_biotype: protein_coding
description:
  Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]


ensembl_gene_id: Rpdx1_2181
symbol: ADU43774.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_5072 elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor Tu domain protein.


ensembl_gene_id: Rpdx1_2182
symbol: rpsJ
gene_biotype: protein_coding
description:
  Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.


ensembl_gene_id: Rpdx1_2183
symbol: rplC
gene_biotype: protein_coding
description:
  50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.


ensembl_gene_id: Rpdx1_2185
symbol: rplW
gene_biotype: protein_coding
description:
  Ribosomal protein L25/L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.


ensembl_gene_id: Rpdx1_2186
symbol: rplB
gene_biotype: protein_coding
description:
  Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.


ensembl_gene_id: Rpdx1_2187
symbol: rpsS
gene_biotype: protein_coding
description:
  Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.


ensembl_gene_id: Rpdx1_2188
symbol: rplV
gene_biotype: protein_coding
description:
  Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.


ensembl_gene_id: Rpdx1_2189
symbol: rpsC
gene_biotype: protein_coding
description:
  Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.


ensembl_gene_id: Rpdx1_2190
symbol: rplP
gene_biotype: protein_coding
description:
  Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.


ensembl_gene_id: Rpdx1_2191
symbol: rpmC
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_5062 50S ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.


ensembl_gene_id: Rpdx1_2192
symbol: rpsQ
gene_biotype: protein_coding
description:
  30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.


ensembl_gene_id: Rpdx1_2193
symbol: rplN
gene_biotype: protein_coding
description:
  Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.


ensembl_gene_id: Rpdx1_2194
symbol: rplX
gene_biotype: protein_coding
description:
  Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.


ensembl_gene_id: Rpdx1_2195
symbol: rplE
gene_biotype: protein_coding
description:
  50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.


ensembl_gene_id: Rpdx1_2196
symbol: rpsN
gene_biotype: protein_coding
description:
  Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.


ensembl_gene_id: Rpdx1_2197
symbol: rpsH
gene_biotype: protein_coding
description:
  Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.


ensembl_gene_id: Rpdx1_2198
symbol: rplF
gene_biotype: protein_coding
description:
  Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.


ensembl_gene_id: Rpdx1_2199
symbol: rplR
gene_biotype: protein_coding
description:
  Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.


ensembl_gene_id: Rpdx1_2200
symbol: rpsE
gene_biotype: protein_coding
description:
  Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.


ensembl_gene_id: Rpdx1_2201
symbol: rpmD
gene_biotype: protein_coding
description:
  KEGG: nwi:Nwi_1382 50S ribosomal protein L30; TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30.


ensembl_gene_id: Rpdx1_2202
symbol: rplO
gene_biotype: protein_coding
description:
  Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.


ensembl_gene_id: Rpdx1_2203
symbol: secY
gene_biotype: protein_coding
description:
  Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.


ensembl_gene_id: Rpdx1_2204
symbol: adk
gene_biotype: protein_coding
description:
  Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.


ensembl_gene_id: Rpdx1_2205
symbol: rpsM
gene_biotype: protein_coding
description:
  30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.


ensembl_gene_id: Rpdx1_2206
symbol: rpsK
gene_biotype: protein_coding
description:
  30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.


ensembl_gene_id: Rpdx1_2207
symbol: rpoA
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: Rpdx1_2208
symbol: rplQ
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_5045 50S ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17.


ensembl_gene_id: Rpdx1_2209
symbol: ADU43802.1
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: oca:OCAR_5704 oxidoreductase, short chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Rpdx1_2210
symbol: ADU43803.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr5371 zinc-binding dehydrogenase; TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily.


ensembl_gene_id: Rpdx1_2212
symbol: ADU43805.1
gene_biotype: protein_coding
description:
  SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: protease Do; KEGG: bbt:BBta_5038 serine protease; PFAM: peptidase S1 and S6 chymotrypsin/Hap; Belongs to the peptidase S1C family.


ensembl_gene_id: Rpdx1_2214
symbol: ADU43806.1
gene_biotype: protein_coding
description:
  AAA ATPase central domain protein; KEGG: bja:bll5367 recombination factor protein RarA; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_2215
symbol: ADU43807.1
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: bbt:BBta_1127 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein.


ensembl_gene_id: Rpdx1_2218
symbol: ADU43810.1
gene_biotype: protein_coding
description:
  PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; response regulator receiver; KEGG: mrd:Mrad2831_4432 PAS/PAC sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; response regulator receiver.


ensembl_gene_id: Rpdx1_2221
symbol: ADU43813.1
gene_biotype: protein_coding
description:
  TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: bbt:BBta_5034 ribosomal large subunit pseudouridine synthase C; SMART: RNA-binding S4 domain protein; Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: Rpdx1_2228
symbol: ADU43820.1
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; KEGG: mdi:METDI3166 putative epimerase with NAD(P)-binding Rossmann-fold domain (YeeZ-like).


ensembl_gene_id: Rpdx1_2231
symbol: ADU43823.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll2800 bifunctional serine/threonine kinase and phosphatase; PFAM: Serine/threonine-protein kinase-like domain; Stage II sporulation E family protein; SMART: serine/threonine protein kinase; protein phosphatase 2C domain protein; Tyrosine-protein kinase, catalytic domain.


ensembl_gene_id: Rpdx1_2236
symbol: ADU43828.1
gene_biotype: protein_coding
description:
  PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: bja:bll5338 indolepyruvate ferredoxin oxidoreductase.


ensembl_gene_id: Rpdx1_2239
symbol: ADU43831.1
gene_biotype: protein_coding
description:
  3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoAhydratase; KEGG: bja:bll5333 putative dehydrogenase; PFAM: MaoC domain protein dehydratase.


ensembl_gene_id: Rpdx1_2240
symbol: ADU43832.1
gene_biotype: protein_coding
description:
  PFAM: dihydrodipicolinate synthetase; KEGG: bja:bll5331 hypothetical protein; Belongs to the DapA family.


ensembl_gene_id: Rpdx1_2242
symbol: ADU43834.1
gene_biotype: protein_coding
description:
  TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: PQQ-dependent enzyme-like; Pyrrolo-quinoline quinone; KEGG: bbt:BBta_5502 putative alcohol dehydrogenase; SMART: Pyrrolo-quinoline quinone beta-propeller repeat.


ensembl_gene_id: Rpdx1_2243
symbol: ADU43835.1
gene_biotype: protein_coding
description:
  Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold-3 domain protein; histidine kinase HAMP region domain protein; KEGG: bja:bll5328 two-component hybrid sensor and regulator; SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein; PAS domain containing protein; histidine kinase HAMP region domain protein.


ensembl_gene_id: Rpdx1_2245
symbol: ADU43837.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO6631 putative methyl-accepting chemotaxis receptor/sensory transducer precursor; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.


ensembl_gene_id: Rpdx1_2249
symbol: ADU43841.1
gene_biotype: protein_coding
description:
  PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: bbt:BBta_4932 deoxyribodipyrimidine photo-lyase type I.


ensembl_gene_id: Rpdx1_2252
symbol: ADU43844.1
gene_biotype: protein_coding
description:
  PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; KEGG: nha:Nham_2165 carbamoyl-phosphate synthase L chain, ATP-binding.


ensembl_gene_id: Rpdx1_2253
symbol: ADU43845.1
gene_biotype: protein_coding
description:
  Putative carboxy-phosphonoenolpyruvate mutase; Catalyzes the decarboxylation of oxaloacetate into pyruvate. Seems to play a role in maintaining cellular concentrations of bicarbonate and pyruvate; Belongs to the isocitrate lyase family. Oxaloacetate decarboxylase subfamily.


ensembl_gene_id: Rpdx1_2254
symbol: ADU43846.1
gene_biotype: protein_coding
description:
  Acylphosphatase; KEGG: bja:bsl5265 putative acylphosphatase; manually curated; PFAM: acylphosphatase.


ensembl_gene_id: Rpdx1_2255
symbol: ADU43847.1
gene_biotype: protein_coding
description:
  Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; GAF domain protein; KEGG: bja:bll6545 hypothetical protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein.


ensembl_gene_id: Rpdx1_2256
symbol: lipB
gene_biotype: protein_coding
description:
  Lipoate-protein ligase B; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.


ensembl_gene_id: Rpdx1_2257
symbol: ADU43849.1
gene_biotype: protein_coding
description:
  KEGG: bja:bsl5256 hypothetical protein; manually curated; PFAM: surface presentation of antigens (SPOA) protein.


ensembl_gene_id: Rpdx1_2263
symbol: ADU43855.1
gene_biotype: protein_coding
description:
  PFAM: aldo/keto reductase; KEGG: bra:BRADO4561 putative aldo/keto reductase; putative 2,5-diketo-D-gluconate reductase B (DkgB-like).


ensembl_gene_id: Rpdx1_2270
symbol: panC
gene_biotype: protein_coding
description:
  Pantoate/beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.


ensembl_gene_id: Rpdx1_2274
symbol: ADU43866.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll5157 hypothetical protein; PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein.


ensembl_gene_id: Rpdx1_2275
symbol: ADU43867.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_2420 serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Sporulation domain protein; Belongs to the peptidase S11 family.


ensembl_gene_id: Rpdx1_2278
symbol: ADU43870.1
gene_biotype: protein_coding
description:
  TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: ATPase AAA-2 domain protein; Clp domain protein; AAA ATPase central domain protein; Clp ATPase-like; KEGG: bja:bll5153 ClpA-like protein; SMART: AAA ATPase; Belongs to the ClpA/ClpB family.


ensembl_gene_id: Rpdx1_2281
symbol: ADU43873.1
gene_biotype: protein_coding
description:
  PFAM: Lytic transglycosylase catalytic; Sporulation domain protein; KEGG: bja:bll5139 transglycosylase.


ensembl_gene_id: Rpdx1_2285
symbol: ADU43877.1
gene_biotype: protein_coding
description:
  KEGG: rca:Rcas_3954 CaCA family Na(+)/Ca(+) antiporter; TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region.


ensembl_gene_id: Rpdx1_2291
symbol: dinB
gene_biotype: protein_coding
description:
  DNA-directed DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.


ensembl_gene_id: Rpdx1_2293
symbol: ADU43885.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll5124 two-component response regulator; PFAM: response regulator receiver; SMART: response regulator receiver.


ensembl_gene_id: Rpdx1_2294
symbol: ADU43886.1
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: nha:Nham_2442 response regulator PleD; SMART: GGDEF domain containing protein; response regulator receiver.


ensembl_gene_id: Rpdx1_2295
symbol: ADU43887.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF2136; KEGG: sit:TM1040_0816 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF2136.


ensembl_gene_id: Rpdx1_2296
symbol: ADU43888.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; KEGG: mno:Mnod_7326 putative transcription regulator with HTH domain protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.


ensembl_gene_id: Rpdx1_2297
symbol: rpmG
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_2441 50S ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.


ensembl_gene_id: Rpdx1_2301
symbol: rnr
gene_biotype: protein_coding
description:
  Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.


ensembl_gene_id: Rpdx1_2302
symbol: topA
gene_biotype: protein_coding
description:
  DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]


ensembl_gene_id: Rpdx1_2304
symbol: ADU43896.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_2285 DNA processing protein DprA, putative; TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein.


ensembl_gene_id: Rpdx1_2305
symbol: plsY
gene_biotype: protein_coding
description:
  Protein of unknown function DUF205; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.


ensembl_gene_id: Rpdx1_2306
symbol: pyrC
gene_biotype: protein_coding
description:
  Dihydroorotase, multifunctional complex type; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.


ensembl_gene_id: Rpdx1_2307
symbol: pyrB
gene_biotype: protein_coding
description:
  TIGRFAM: aspartate carbamoyltransferase; KEGG: bbt:BBta_4725 aspartate carbamoyltransferase catalytic subunit; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.


ensembl_gene_id: Rpdx1_2308
symbol: ADU43900.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_0512 indole-3-pyruvate decarboxylase; TIGRFAM: indolepyruvate/phenylpyruvate decarboxylase; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP-binding.


ensembl_gene_id: Rpdx1_2311
symbol: ADU43903.1
gene_biotype: protein_coding
description:
  Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.


ensembl_gene_id: Rpdx1_2314
symbol: gatC
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.


ensembl_gene_id: Rpdx1_2318
symbol: gatA
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) amidotransferase, A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).


ensembl_gene_id: Rpdx1_2319
symbol: ADU43910.1
gene_biotype: protein_coding
description:
  KEGG: mlo:mlr9681 sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: histidine kinase dimerisation/phosphoacceptor; ATP-binding region ATPase domain protein.


ensembl_gene_id: Rpdx1_2321
symbol: gatB
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.


ensembl_gene_id: Rpdx1_2324
symbol: ADU43915.1
gene_biotype: protein_coding
description:
  PFAM: conserved hypothetical protein; KEGG: reu:Reut_A0309 twin-arginine translocation pathway signal.


ensembl_gene_id: Rpdx1_2326
symbol: panB
gene_biotype: protein_coding
description:
  3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.


ensembl_gene_id: Rpdx1_2329
symbol: der
gene_biotype: protein_coding
description:
  Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.


ensembl_gene_id: Rpdx1_2331
symbol: ADU43922.1
gene_biotype: protein_coding
description:
  TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: cell surface receptor IPT/TIG domain protein; KEGG: bra:BRADO3823 hypothetical protein; SMART: cell surface receptor IPT/TIG domain protein.


ensembl_gene_id: Rpdx1_2336
symbol: ADU43927.1
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: nwi:Nwi_2019 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Rpdx1_2337
symbol: purF
gene_biotype: protein_coding
description:
  Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.


ensembl_gene_id: Rpdx1_2339
symbol: radA
gene_biotype: protein_coding
description:
  DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.


ensembl_gene_id: Rpdx1_2342
symbol: ADU43933.1
gene_biotype: protein_coding
description:
  Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.


ensembl_gene_id: Rpdx1_2343
symbol: ADU43934.1
gene_biotype: protein_coding
description:
  Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.


ensembl_gene_id: Rpdx1_2344
symbol: ADU43935.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_2287 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase.


ensembl_gene_id: Rpdx1_2350
symbol: rpsR
gene_biotype: protein_coding
description:
  Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.


ensembl_gene_id: Rpdx1_2352
symbol: ADU43943.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr4082 acyl-carrier-protein S-malonyltransferase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase.


ensembl_gene_id: Rpdx1_2353
symbol: ADU43944.1
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Rpdx1_2355
symbol: ADU43946.1
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.


ensembl_gene_id: Rpdx1_2356
symbol: mltG
gene_biotype: protein_coding
description:
  Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.


ensembl_gene_id: Rpdx1_2357
symbol: ADU43948.1
gene_biotype: protein_coding
description:
  PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: bja:blr4087 hypothetical protein.


ensembl_gene_id: Rpdx1_2360
symbol: ADU43951.1
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: bja:bll4101 putative NAD-dependent alcohol dehydrogenase.


ensembl_gene_id: Rpdx1_2361
symbol: rsmA
gene_biotype: protein_coding
description:
  Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.


ensembl_gene_id: Rpdx1_2362
symbol: pdxA
gene_biotype: protein_coding
description:
  4-hydroxythreonine-4-phosphate dehydrogenase; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP).


ensembl_gene_id: Rpdx1_2364
symbol: lptD
gene_biotype: protein_coding
description:
  Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.


ensembl_gene_id: Rpdx1_2367
symbol: pepA
gene_biotype: protein_coding
description:
  Peptidase M17 leucyl aminopeptidase domain protein; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.


ensembl_gene_id: Rpdx1_2370
symbol: ADU43961.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO3331 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_2371
symbol: ndk
gene_biotype: protein_coding
description:
  Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.


ensembl_gene_id: Rpdx1_2373
symbol: ADU43964.1
gene_biotype: protein_coding
description:
  Putative transcriptional regulator, Crp/Fnr family; Manually curated; KEGG: bja:blr1556 hypothetical protein.


ensembl_gene_id: Rpdx1_2374
symbol: ADU43965.1
gene_biotype: protein_coding
description:
  KEGG: nwi:Nwi_1599 cold-shock protein, DNA-binding; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein.


ensembl_gene_id: Rpdx1_2375
symbol: purN
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.


ensembl_gene_id: Rpdx1_2376
symbol: purM
gene_biotype: protein_coding
description:
  TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; KEGG: bbt:BBta_3852 phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein.


ensembl_gene_id: Rpdx1_2379
symbol: ppk
gene_biotype: protein_coding
description:
  Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.


ensembl_gene_id: Rpdx1_2382
symbol: rnd
gene_biotype: protein_coding
description:
  Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family.


ensembl_gene_id: Rpdx1_2383
symbol: selO
gene_biotype: protein_coding
description:
  Protein of unknown function UPF0061; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family.


ensembl_gene_id: Rpdx1_2384
symbol: aspS
gene_biotype: protein_coding
description:
  aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.


ensembl_gene_id: Rpdx1_2385
symbol: ADU43976.1
gene_biotype: protein_coding
description:
  PFAM: malic protein NAD-binding; malic protein domain protein; phosphate acetyl/butaryl transferase; KEGG: bbt:BBta_3876 malic enzyme.


ensembl_gene_id: Rpdx1_2394
symbol: ADU43985.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr4156 acetylornithine deacetylase; TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein.


ensembl_gene_id: Rpdx1_2400
symbol: kup
gene_biotype: protein_coding
description:
  Potassium transporter; Transport of potassium into the cell; Belongs to the HAK/KUP transporter (TC 2.A.72) family.


ensembl_gene_id: Rpdx1_2404
symbol: ADU43995.1
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bbt:BBta_6701 putative diguanylate cyclase (GGDEF); SMART: GGDEF domain containing protein.


ensembl_gene_id: Rpdx1_2406
symbol: ADU43997.1
gene_biotype: protein_coding
description:
  KEGG: vap:Vapar_2562 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Rpdx1_2407
symbol: ADU43998.1
gene_biotype: protein_coding
description:
  KEGG: mrd:Mrad2831_3044 hydrophobe/amphiphile efflux-1 (HAE1) family protein; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein.


ensembl_gene_id: Rpdx1_2408
symbol: ADU43999.1
gene_biotype: protein_coding
description:
  Glutamate--cysteine ligase GCS2; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.


ensembl_gene_id: Rpdx1_2409
symbol: ADU44000.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO0860 asparagine synthetase; TIGRFAM: asparagine synthase family amidotransferase; asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II.


ensembl_gene_id: Rpdx1_2412
symbol: ADU44003.1
gene_biotype: protein_coding
description:
  PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; Na+/H+ antiporter MnhB subunit-related protein; KEGG: jan:Jann_3715 putative monovalent cation/H+ antiporter subunit A.


ensembl_gene_id: Rpdx1_2413
symbol: ADU44004.1
gene_biotype: protein_coding
description:
  PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: tmz:Tmz1t_1101 NADH-ubiquinone oxidoreductase chain 4L.


ensembl_gene_id: Rpdx1_2416
symbol: ADU44007.1
gene_biotype: protein_coding
description:
  PFAM: multiple resistance and pH regulation protein F; KEGG: dsh:Dshi_3809 multiple resistance and pH regulation protein F.


ensembl_gene_id: Rpdx1_2417
symbol: ADU44008.1
gene_biotype: protein_coding
description:
  KEGG: pde:Pden_0702 monovalent cation/proton antiporter, MnhG/PhaG subunit; TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit.


ensembl_gene_id: Rpdx1_2420
symbol: ADU44011.1
gene_biotype: protein_coding
description:
  Nitrogenase; KEGG: dsy:DSY3569 nitrogenase subunit NifH; PFAM: NifH/frxC-family protein; Belongs to the NifH/BchL/ChlL family.


ensembl_gene_id: Rpdx1_2421
symbol: ADU44012.1
gene_biotype: protein_coding
description:
  PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: cff:CFF8240_1206 putative TonB-dependent receptor.


ensembl_gene_id: Rpdx1_2422
symbol: ADU44013.1
gene_biotype: protein_coding
description:
  PFAM: periplasmic binding protein; KEGG: rle:RL2022 putative solute-binding component of cationic transporter.


ensembl_gene_id: Rpdx1_2423
symbol: ADU44014.1
gene_biotype: protein_coding
description:
  PFAM: transport system permease protein; KEGG: pde:Pden_1169 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: Rpdx1_2433
symbol: ADU44024.1
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dsh:Dshi_2526 putative sulfide quinone-rductase.


ensembl_gene_id: Rpdx1_2434
symbol: ADU44025.1
gene_biotype: protein_coding
description:
  PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: alv:Alvin_2499 cytochrome bd ubiquinol oxidase subunit I.


ensembl_gene_id: Rpdx1_2435
symbol: ADU44026.1
gene_biotype: protein_coding
description:
  KEGG: alv:Alvin_2500 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II.


ensembl_gene_id: Rpdx1_2436
symbol: ADU44027.1
gene_biotype: protein_coding
description:
  Cyd operon protein YbgT; KEGG: pha:PSHAa2020 hypothetical protein; TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein.


ensembl_gene_id: Rpdx1_2437
symbol: ADU44028.1
gene_biotype: protein_coding
description:
  TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; PFAM: ABC transporter related; ABC transporter transmembrane region; KEGG: alv:Alvin_0482 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_2438
symbol: ADU44029.1
gene_biotype: protein_coding
description:
  KEGG: alv:Alvin_0481 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related.


ensembl_gene_id: Rpdx1_2439
symbol: ADU44030.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bbt:BBta_4287 LysR family transcriptional regulator.


ensembl_gene_id: Rpdx1_2440
symbol: ADU44031.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO3420 4-aminobutyrate aminotransferase ((S)-3-amino-2-methylpropionate transaminase); TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Rpdx1_2442
symbol: ADU44033.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_4285 acetylornithine deacetylase; TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein.


ensembl_gene_id: Rpdx1_2443
symbol: ADU44034.1
gene_biotype: protein_coding
description:
  PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein TPP binding domain protein; KEGG: rsk:RSKD131_4355 pyruvate decarboxylase.


ensembl_gene_id: Rpdx1_2444
symbol: ADU44035.1
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: azl:AZL_b03280 peptide/nickel transport system substrate-binding protein.


ensembl_gene_id: Rpdx1_2445
symbol: ADU44036.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azl:AZL_b03270 peptide/nickel transport system permease protein.


ensembl_gene_id: Rpdx1_2446
symbol: ADU44037.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azl:AZL_b03260 peptide/nickel transport system permease protein.


ensembl_gene_id: Rpdx1_2447
symbol: ADU44038.1
gene_biotype: protein_coding
description:
  ABC transporter related protein; KEGG: azl:AZL_b03250 peptide/nickel transport system ATP-binding protein; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Rpdx1_2448
symbol: ADU44039.1
gene_biotype: protein_coding
description:
  TIGRFAM: gamma-glutamyltransferase; KEGG: bbt:BBta_7627 putative gamma-glutamyltranspeptidase; PFAM: gamma-glutamyltranspeptidase.


ensembl_gene_id: Rpdx1_2450
symbol: ADU44041.1
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: maq:Maqu_2810 alcohol dehydrogenase.


ensembl_gene_id: Rpdx1_2453
symbol: ADU44044.1
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:bll6454 ABC transporter permease protein.


ensembl_gene_id: Rpdx1_2454
symbol: ADU44045.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO4363 alkanesulfonate ABC transporter, ATP binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: Rpdx1_2456
symbol: ADU44047.1
gene_biotype: protein_coding
description:
  PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: cvi:CV_0893 5-carboxymethyl-2-hydroxymuconate D-isomerase.


ensembl_gene_id: Rpdx1_2457
symbol: ADU44048.1
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: xau:Xaut_2408 diguanylate cyclase; SMART: GGDEF domain containing protein.


ensembl_gene_id: Rpdx1_2464
symbol: ADU44055.1
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.


ensembl_gene_id: Rpdx1_2466
symbol: ADU44057.1
gene_biotype: protein_coding
description:
  PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: bbt:BBta_4121 putative phosphoglycerate dehydrogenase.


ensembl_gene_id: Rpdx1_2470
symbol: bioD
gene_biotype: protein_coding
description:
  Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.


ensembl_gene_id: Rpdx1_2471
symbol: ADU44062.1
gene_biotype: protein_coding
description:
  Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; KEGG: nha:Nham_2814 adenosylmethionine--8-amino-7-oxononanoate transaminase; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Rpdx1_2473
symbol: ADU44064.1
gene_biotype: protein_coding
description:
  PFAM: Transcriptional regulator TetR; regulatory protein TetR; KEGG: bid:Bind_2883 TetR family transcriptional regulator.


ensembl_gene_id: Rpdx1_2474
symbol: ADU44065.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_2234 glutamine synthetase, type I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp.


ensembl_gene_id: Rpdx1_2475
symbol: ADU44066.1
gene_biotype: protein_coding
description:
  PFAM: nitrogen regulatory protein P-II; KEGG: bja:blr4948 nitrogen regulatory protein PII; Belongs to the P(II) protein family.


ensembl_gene_id: Rpdx1_2476
symbol: nnrE
gene_biotype: protein_coding
description:
  Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.  Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow t [...]


ensembl_gene_id: Rpdx1_2477
symbol: ADU44068.1
gene_biotype: protein_coding
description:
  PFAM: multicopper oxidase type 2; multicopper oxidase type 1; KEGG: nha:Nham_2231 twin-arginine translocation pathway signal.


ensembl_gene_id: Rpdx1_2478
symbol: tig
gene_biotype: protein_coding
description:
  Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.


ensembl_gene_id: Rpdx1_2479
symbol: clpP
gene_biotype: protein_coding
description:
  Endopeptidase Clp; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.


ensembl_gene_id: Rpdx1_2480
symbol: clpX
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.


ensembl_gene_id: Rpdx1_2481
symbol: lon
gene_biotype: protein_coding
description:
  ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.


ensembl_gene_id: Rpdx1_2483
symbol: ADU44074.1
gene_biotype: protein_coding
description:
  KEGG: azc:AZC_3305 hydrophobe/amphiphile efflux-1; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein.


ensembl_gene_id: Rpdx1_2484
symbol: ADU44075.1
gene_biotype: protein_coding
description:
  KEGG: xau:Xaut_0513 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Rpdx1_2485
symbol: ADU44076.1
gene_biotype: protein_coding
description:
  Peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.


ensembl_gene_id: Rpdx1_2486
symbol: ADU44077.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_2223 histone-like DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; Belongs to the bacterial histone-like protein family.


ensembl_gene_id: Rpdx1_2490
symbol: ADU44081.1
gene_biotype: protein_coding
description:
  KEGG: mdo:100022193 similar to regenerating islet-derived 1 alpha (pancreatic stone protein, pancreatic thread protein).


ensembl_gene_id: Rpdx1_2495
symbol: ADU44086.1
gene_biotype: protein_coding
description:
  Helix-turn-helix domain protein; KEGG: cak:Caul_2278 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.


ensembl_gene_id: Rpdx1_2500
symbol: ADU44091.1
gene_biotype: protein_coding
description:
  KEGG: hba:Hbal_1124 helix-turn-helix domain protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.


ensembl_gene_id: Rpdx1_2501
symbol: ADU44092.1
gene_biotype: protein_coding
description:
  Helix-turn-helix domain protein; KEGG: tai:Taci_1585 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.


ensembl_gene_id: Rpdx1_2508
symbol: ADU44099.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function DUF2312; KEGG: nha:Nham_1221 hypothetical protein; Belongs to the UPF0335 family.


ensembl_gene_id: Rpdx1_2512
symbol: ADU44103.1
gene_biotype: protein_coding
description:
  PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: aac:Aaci_2995 integrase family protein; Belongs to the 'phage' integrase family.


ensembl_gene_id: Rpdx1_2551
symbol: nuoA
gene_biotype: protein_coding
description:
  NADH-ubiquinone/plastoquinone oxidoreductase chain 3; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family.


ensembl_gene_id: Rpdx1_2552
symbol: nuoB
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, B subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: Rpdx1_2553
symbol: nuoC
gene_biotype: protein_coding
description:
  NADH (or F420H2) dehydrogenase, subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family.


ensembl_gene_id: Rpdx1_2554
symbol: nuoD
gene_biotype: protein_coding
description:
  NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.


ensembl_gene_id: Rpdx1_2556
symbol: ADU44145.1
gene_biotype: protein_coding
description:
  TIGRFAM: NADH-quinone oxidoreductase, E subunit; KEGG: oca:OCAR_5927 NADH dehydrogenase subunit E; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit.


ensembl_gene_id: Rpdx1_2558
symbol: ADU44147.1
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, F subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.


ensembl_gene_id: Rpdx1_2559
symbol: ADU44148.1
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.


ensembl_gene_id: Rpdx1_2560
symbol: nuoH
gene_biotype: protein_coding
description:
  Respiratory-chain NADH dehydrogenase subunit 1; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.


ensembl_gene_id: Rpdx1_2561
symbol: nuoI
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: Rpdx1_2562
symbol: ADU44151.1
gene_biotype: protein_coding
description:
  NADH-ubiquinone/plastoquinone oxidoreductase chain 6; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: Rpdx1_2563
symbol: nuoK
gene_biotype: protein_coding
description:
  NADH-ubiquinone oxidoreductase chain 4L; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family.


ensembl_gene_id: Rpdx1_2564
symbol: ADU44153.1
gene_biotype: protein_coding
description:
  TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; KEGG: bja:bll4906 NADH dehydrogenase subunit L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein.


ensembl_gene_id: Rpdx1_2565
symbol: ADU44154.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_4549 NADH dehydrogenase subunit M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I).


ensembl_gene_id: Rpdx1_2566
symbol: nuoN
gene_biotype: protein_coding
description:
  Proton-translocating NADH-quinone oxidoreductase, chain N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family.


ensembl_gene_id: Rpdx1_2567
symbol: ADU44156.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll4903 biotin--protein ligase; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; biotin protein ligase domain protein.


ensembl_gene_id: Rpdx1_2568
symbol: ADU44157.1
gene_biotype: protein_coding
description:
  PFAM: RNA-metabolising metallo-beta-lactamase; KEGG: bra:BRADO4169 metallo-beta-lactamase family hydrolase.


ensembl_gene_id: Rpdx1_2569
symbol: ADU44158.1
gene_biotype: protein_coding
description:
  TIGRFAM: methylmalonyl-CoA epimerase; KEGG: bbt:BBta_4545 methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Rpdx1_2575
symbol: proS
gene_biotype: protein_coding
description:
  prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro); Belongs to the class-II aminoacyl-tRNA synthetase family. ProS type 2 subfamily.


ensembl_gene_id: Rpdx1_2576
symbol: ADU44165.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_2196 LolC/E family lipoprotein releasing system, transmembrane protein; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214.


ensembl_gene_id: Rpdx1_2577
symbol: lolD
gene_biotype: protein_coding
description:
  ABC transporter related protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.


ensembl_gene_id: Rpdx1_2581
symbol: ADU44168.1
gene_biotype: protein_coding
description:
  DNA polymerase III, alpha subunit; SMART: phosphoesterase PHP domain protein; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: bra:BRADO4145 DNA polymerase III subunit alpha; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type.


ensembl_gene_id: Rpdx1_2583
symbol: rpsB
gene_biotype: protein_coding
description:
  Ribosomal protein S2; KEGG: nha:Nham_1694 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.


ensembl_gene_id: Rpdx1_2584
symbol: tsf
gene_biotype: protein_coding
description:
  Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.


ensembl_gene_id: Rpdx1_2586
symbol: frr
gene_biotype: protein_coding
description:
  Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.


ensembl_gene_id: Rpdx1_2587
symbol: ADU44174.1
gene_biotype: protein_coding
description:
  Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.


ensembl_gene_id: Rpdx1_2588
symbol: ADU44175.1
gene_biotype: protein_coding
description:
  PFAM: phosphatidate cytidylyltransferase; KEGG: nha:Nham_1699 phosphatidate cytidylyltransferase; Belongs to the CDS family.


ensembl_gene_id: Rpdx1_2589
symbol: dxr
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.


ensembl_gene_id: Rpdx1_2590
symbol: ADU44177.1
gene_biotype: protein_coding
description:
  TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; KEGG: nwi:Nwi_1852 peptidase M50, putative membrane-associated zinc metallopeptidase; SMART: PDZ/DHR/GLGF domain protein.


ensembl_gene_id: Rpdx1_2591
symbol: bamA
gene_biotype: protein_coding
description:
  Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: Rpdx1_2592
symbol: lpxD
gene_biotype: protein_coding
description:
  UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.


ensembl_gene_id: Rpdx1_2593
symbol: fabZ
gene_biotype: protein_coding
description:
  Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs.


ensembl_gene_id: Rpdx1_2594
symbol: ADU44181.1
gene_biotype: protein_coding
description:
  acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: Rpdx1_2596
symbol: ADU44183.1
gene_biotype: protein_coding
description:
  lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: Rpdx1_2597
symbol: ADU44184.1
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO4126 type II citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; Belongs to the citrate synthase family.


ensembl_gene_id: Rpdx1_2598
symbol: gltX
gene_biotype: protein_coding
description:
  glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.


ensembl_gene_id: Rpdx1_2599
symbol: glnS
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO4124 glutaminyl-tRNA synthetase; TIGRFAM: glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain.


ensembl_gene_id: Rpdx1_2600
symbol: ADU44187.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll4830 hypothetical protein; TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein.


ensembl_gene_id: Rpdx1_2601
symbol: lexA
gene_biotype: protein_coding
description:
  Transcriptional repressor, LexA family; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.


ensembl_gene_id: Rpdx1_2602
symbol: ADU44189.1
gene_biotype: protein_coding
description:
  Molybdenum cofactor synthesis domain protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.


ensembl_gene_id: Rpdx1_2605
symbol: ADU44192.1
gene_biotype: protein_coding
description:
  HAD-superfamily hydrolase, subfamily IA, variant 3; KEGG: bra:BRADO4115 putative haloacid dehalogenase-like hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase.


ensembl_gene_id: Rpdx1_2608
symbol: ADU44195.1
gene_biotype: protein_coding
description:
  PFAM: heat shock protein Hsp20; KEGG: pde:Pden_3146 heat shock protein HSP20; Belongs to the small heat shock protein (HSP20) family.


ensembl_gene_id: Rpdx1_2610
symbol: ADU44197.1
gene_biotype: protein_coding
description:
  KEGG: bja:blr3815 putative cation-transporting ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase.


ensembl_gene_id: Rpdx1_2611
symbol: moaC
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein C; Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC family.


ensembl_gene_id: Rpdx1_2612
symbol: trpC
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO4110 indole-3-glycerol-phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase; Belongs to the TrpC family.


ensembl_gene_id: Rpdx1_2614
symbol: trpD
gene_biotype: protein_coding
description:
  Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).


ensembl_gene_id: Rpdx1_2615
symbol: ADU44201.1
gene_biotype: protein_coding
description:
  PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: bja:blr4808 peptidyl-prolyl cis-trans isomerse.


ensembl_gene_id: Rpdx1_2616
symbol: tpiA
gene_biotype: protein_coding
description:
  Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.


ensembl_gene_id: Rpdx1_2617
symbol: ADU44203.1
gene_biotype: protein_coding
description:
  Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.


ensembl_gene_id: Rpdx1_2618
symbol: pyrG
gene_biotype: protein_coding
description:
  CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.


ensembl_gene_id: Rpdx1_2625
symbol: kdsA
gene_biotype: protein_coding
description:
  TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; KEGG: bra:BRADO4101 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA.


ensembl_gene_id: Rpdx1_2626
symbol: opgH
gene_biotype: protein_coding
description:
  Glycosyl transferase family 2; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs).


ensembl_gene_id: Rpdx1_2627
symbol: opgG
gene_biotype: protein_coding
description:
  Periplasmic glucan biosynthesis protein MdoG; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs).


ensembl_gene_id: Rpdx1_2628
symbol: queF
gene_biotype: protein_coding
description:
  7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily.


ensembl_gene_id: Rpdx1_2629
symbol: eno
gene_biotype: protein_coding
description:
  Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.


ensembl_gene_id: Rpdx1_2630
symbol: ADU44216.1
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: bbt:BBta_4470 alcohol dehydrogenase-like protein.


ensembl_gene_id: Rpdx1_2633
symbol: ADU44219.1
gene_biotype: protein_coding
description:
  PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: vei:Veis_3236 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.


ensembl_gene_id: Rpdx1_2636
symbol: pdhA
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).


ensembl_gene_id: Rpdx1_2637
symbol: ADU44223.1
gene_biotype: protein_coding
description:
  Transketolase central region; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.


ensembl_gene_id: Rpdx1_2639
symbol: ADU44225.1
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).


ensembl_gene_id: Rpdx1_2640
symbol: ADU44226.1
gene_biotype: protein_coding
description:
  KEGG: bja:bll4778 dihydrolipoamide dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region.


ensembl_gene_id: Rpdx1_2641
symbol: ADU44227.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_1754 Sel1-like; PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein.


ensembl_gene_id: Rpdx1_2642
symbol: ADU44228.1
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease III Xth; KEGG: bja:blr4761 exonuclease III; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase.


ensembl_gene_id: Rpdx1_2643
symbol: ADU44229.1
gene_biotype: protein_coding
description:
  KEGG: met:M446_3173 helix-turn-helix domain-containing protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.


ensembl_gene_id: Rpdx1_2648
symbol: ADU44234.1
gene_biotype: protein_coding
description:
  KEGG: nha:Nham_1756 HesB/YadR/YfhF; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; Belongs to the HesB/IscA family.


ensembl_gene_id: Rpdx1_2649
symbol: ADU44235.1
gene_biotype: protein_coding
description:
  TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: bja:bll4758 deoxyguanosinetriphosphate triphosphohydrolase; SMART: metal-dependent phosphohydrolase HD region; Belongs to the dGTPase family. Type 2 subfamily.


ensembl_gene_id: Rpdx1_2653
symbol: ADU44239.1
gene_biotype: protein_coding
description:
  Chromosome segregation and condensation protein ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: Rpdx1_2654
symbol: ADU44240.1
gene_biotype: protein_coding
description:
  Chromosome segregation and condensation protein, ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: Rpdx1_2655
symbol: tatA
gene_biotype: protein_coding
description:
  Twin-arginine translocation protein, TatA/E family subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.


ensembl_gene_id: Rpdx1_2656
symbol: tatB
gene_biotype: protein_coding
description:
  Twin-arginine translocation protein, TatB subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.


ensembl_gene_id: Rpdx1_2657
symbol: tatC
gene_biotype: protein_coding
description:
  Sec-independent protein translocase, TatC subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.


ensembl_gene_id: Rpdx1_2658
symbol: ADU44244.1
gene_biotype: protein_coding
description:
  KEGG: mrd:Mrad2831_1933 outer membrane autotransporter; TIGRFAM: outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein.


ensembl_gene_id: Rpdx1_2659
symbol: serS
gene_biotype: protein_coding
description:
  seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).


ensembl_gene_id: Rpdx1_2662
symbol: surE
gene_biotype: protein_coding
description:
  Stationary-phase survival protein SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.


ensembl_gene_id: Rpdx1_2663
symbol: ADU44249.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_4411 putative response regulator receiver (CheY-like protein); PFAM: response regulator receiver; SMART: response regulator receiver.


ensembl_gene_id: Rpdx1_2665
symbol: ADU44251.1
gene_biotype: protein_coding
description:
  Peptidase M23; KEGG: nha:Nham_1795 peptidase M23B; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.


ensembl_gene_id: Rpdx1_2668
symbol: yajC
gene_biotype: protein_coding
description:
  Preprotein translocase, YajC subunit; The SecYEG-SecDF-YajC-YidC holo-translocon (HTL) protein secretase/insertase is a supercomplex required for protein secretion, insertion of proteins into membranes, and assembly of membrane protein complexes. While the SecYEG complex is essential for assembly of a number of proteins and complexes, the SecDF-YajC-YidC subcomplex facilitates these functions.


ensembl_gene_id: Rpdx1_2669
symbol: secD
gene_biotype: protein_coding
description:
  Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: Rpdx1_2670
symbol: secF
gene_biotype: protein_coding
description:
  Protein-export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: Rpdx1_2672
symbol: ADU44258.1
gene_biotype: protein_coding
description:
  PFAM: Squalene/phytoene synthase; KEGG: bra:BRADO4032 putative phytoene synthase (terpenoid synthase).


ensembl_gene_id: Rpdx1_2673
symbol: trmFO
gene_biotype: protein_coding
description:
  Gid protein; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily.


ensembl_gene_id: Rpdx1_2688
symbol: uvrA
gene_biotype: protein_coding
description:
  Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.


ensembl_gene_id: Rpdx1_2690
symbol: ADU44276.1
gene_biotype: protein_coding
description:
  Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.


ensembl_gene_id: Rpdx1_2692
symbol: ADU44278.1
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: bbt:BBta_7487 hypothetical protein.


ensembl_gene_id: Rpdx1_2693
symbol: ADU44279.1
gene_biotype: protein_coding
description:
  MazG family protein; KEGG: nha:Nham_1845 nucleoside triphosphate pyrophosphohydrolase; TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase.


ensembl_gene_id: Rpdx1_2694
symbol: queC
gene_biotype: protein_coding
description:
  exsB protein; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.


ensembl_gene_id: Rpdx1_2698
symbol: ADU44284.1
gene_biotype: protein_coding
description:
  Nitrile hydratase; NHase catalyzes the hydration of various nitrile compounds to the corresponding amides; Belongs to the nitrile hydratase subunit beta family.


ensembl_gene_id: Rpdx1_2699
symbol: ADU44285.1
gene_biotype: protein_coding
description:
  TIGRFAM: nitrile hydratase, alpha subunit; KEGG: bbt:BBta_4085 nitrile hydratase subunit alpha (nitrilase) (NHase); PFAM: Nitrile hydratase alpha chain.


ensembl_gene_id: Rpdx1_2705
symbol: ADU44291.1
gene_biotype: protein_coding
description:
  TIGRFAM: pyridoxal kinase; KEGG: rru:Rru_A1145 pyridoxal kinase; PFAM: Phosphomethylpyrimidine kinase type-1; Belongs to the pyridoxine kinase family.


ensembl_gene_id: Rpdx1_2706
symbol: ADU44292.1
gene_biotype: protein_coding
description:
  KEGG: rru:Rru_A1144 benzoate membrane transport protein; TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein.


ensembl_gene_id: Rpdx1_2707
symbol: ADU44293.1
gene_biotype: protein_coding
description:
  KEGG: rru:Rru_A1143 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH.


ensembl_gene_id: Rpdx1_2708
symbol: glyA
gene_biotype: protein_coding
description:
  Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.


ensembl_gene_id: Rpdx1_2710
symbol: ADU44296.1
gene_biotype: protein_coding
description:
  Monovalent cation/proton antiporter, MnhG/PhaG subunit; KEGG: rhi:NGR_c29730 pH adaptation potassium efflux system protein G; TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit.


ensembl_gene_id: Rpdx1_2711
symbol: ADU44297.1
gene_biotype: protein_coding
description:
  PFAM: multiple resistance and pH regulation protein F; KEGG: atc:AGR_C_896 multicomponent K+:H+ antiporter subunit F.


ensembl_gene_id: Rpdx1_2713
symbol: ADU44299.1
gene_biotype: protein_coding
description:
  NADH dehydrogenase (quinone); KEGG: nha:Nham_1008 putative monovalent cation/H+ antiporter subunit D; PFAM: NADH/Ubiquinone/plastoquinone (complex I).


ensembl_gene_id: Rpdx1_2714
symbol: ADU44300.1
gene_biotype: protein_coding
description:
  PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: oca:OCAR_5198 putative monovalent cation/H+ antiporter subunit C.


ensembl_gene_id: Rpdx1_2715
symbol: ADU44301.1
gene_biotype: protein_coding
description:
  PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; Na+/H+ antiporter MnhB subunit-related protein; KEGG: nha:Nham_1010 putative monovalent cation/H+ antiporter subunit A.


ensembl_gene_id: Rpdx1_2720
symbol: ADU44305.1
gene_biotype: protein_coding
description:
  TRAP dicarboxylate transporter, DctP subunit; KEGG: bja:blr4511 ABC transporter substrate-binding protein; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7.


ensembl_gene_id: Rpdx1_2721
symbol: ADU44306.1
gene_biotype: protein_coding
description:
  PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: bbt:BBta_4095 TRAP-type C4-dicarboxylate transporter small and large permease.


ensembl_gene_id: Rpdx1_2724
symbol: ADU44309.1
gene_biotype: protein_coding
description:
  Hydrolase, TatD family; KEGG: nwi:Nwi_1461 TatD-related deoxyribonuclease; TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease.


ensembl_gene_id: Rpdx1_2725
symbol: metG
gene_biotype: protein_coding
description:
  methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.


ensembl_gene_id: Rpdx1_2727
symbol: tmk
gene_biotype: protein_coding
description:
  Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.


ensembl_gene_id: Rpdx1_2728
symbol: ADU44313.1
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_4103 putative serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; Belongs to the peptidase S11 family.


ensembl_gene_id: Rpdx1_2733
symbol: ADU44318.1
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bja:bll4961 hypothetical protein; SMART: GGDEF domain containing protein.


ensembl_gene_id: Rpdx1_2735
symbol: rpsI
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein S9; KEGG: bbt:BBta_4591 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.


ensembl_gene_id: Rpdx1_2736
symbol: rplM
gene_biotype: protein_coding
description:
  Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.


ensembl_gene_id: Rpdx1_2740
symbol: ADU44325.1
gene_biotype: protein_coding
description:
  TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: bja:blr4967 O-acetylhomoserine aminocarboxypropyltransferase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein.


ensembl_gene_id: Rpdx1_2743
symbol: ADU44327.1
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pzu:PHZ_c1556 threonine dehydrogenase.


ensembl_gene_id: Rpdx1_2744
symbol: ADU44328.1
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: hne:HNE_0924 short chain dehydrogenase/reductase family oxidoreductase.


ensembl_gene_id: Rpdx1_2745
symbol: ADU44329.1
gene_biotype: protein_coding
description:
  PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; KEGG: mjl:Mjls_2332 thiamine pyrophosphate binding domain-containing protein; Belongs to the TPP enzyme family.


ensembl_gene_id: Rpdx1_2747
symbol: ctaA
gene_biotype: protein_coding
description:
  Cytochrome oxidase assembly; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily.


ensembl_gene_id: Rpdx1_2750
symbol: ADU44334.1
gene_biotype: protein_coding
description:
  PFAM: Ferritin Dps family protein; KEGG: eba:ebA1978 DNA-binding ferritin-like protein (oxidative damage protectant); Belongs to the Dps family.


ensembl_gene_id: Rpdx1_2752
symbol: ADU44336.1
gene_biotype: protein_coding
description:
  PFAM: NapC/NirT cytochrome c domain protein; KEGG: rru:Rru_A1283 membrane-bound tetrahaem cytochrome TorC/YecK; Belongs to the TorC/TorY family.


ensembl_gene_id: Rpdx1_2755
symbol: ADU44339.1
gene_biotype: protein_coding
description:
  PFAM: lipopolysaccharide biosynthesis protein; KEGG: bbt:BBta_4605 polysaccharide biosynthesis transporter.


ensembl_gene_id: Rpdx1_2757
symbol: ADU44341.1
gene_biotype: protein_coding
description:
  Undecaprenyl-phosphate glucose phosphotransferase; KEGG: bra:BRADO4231 putative sugar transferase family protein; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.


ensembl_gene_id: Rpdx1_2761
symbol: ADU44345.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; KEGG: bja:bll5018 hypothetical protein; PFAM: regulatory protein MerR; SMART: regulatory protein MerR.


ensembl_gene_id: Rpdx1_2762
symbol: ihfA
gene_biotype: protein_coding
description:
  Integration host factor, alpha subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.


ensembl_gene_id: Rpdx1_2763
symbol: fabH
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.


