# geneInfo

ensembl_gene_id: Psed_2932
symbol: Psed_2932
gene_biotype: protein_coding
description:
  NGG1p interacting factor 3 protein, NIF3; KEGG: ami:Amir_0879 protein of unknown function DUF34; TIGRFAM: NGG1p interacting factor 3, NIF3; PFAM: NGG1p interacting factor 3, NIF3; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.


ensembl_gene_id: Psed_2934
symbol: Psed_2934
gene_biotype: protein_coding
description:
  Phosphoglycerate mutase; KEGG: req:REQ_28750 RNase H domain phosphoglycerate/bisphosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1.


ensembl_gene_id: Psed_2935
symbol: Psed_2935
gene_biotype: protein_coding
description:
  Citrate transporter; PFAM: Divalent ion symporter; KEGG: mjl:Mjls_5120 arsenical pump membrane protein.


ensembl_gene_id: Psed_2937
symbol: Psed_2937
gene_biotype: protein_coding
description:
  HNH endonuclease; KEGG: amd:AMED_5856 predicted HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease.


ensembl_gene_id: Psed_2938
symbol: Psed_2938
gene_biotype: protein_coding
description:
  RNA-directed DNA polymerase; KEGG: sen:SACE_5712 retron-type reverse transcriptase; PFAM: Reverse transcriptase.


ensembl_gene_id: Psed_2940
symbol: Psed_2940
gene_biotype: protein_coding
description:
  KEGG: cwo:Cwoe_3319 HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase.


ensembl_gene_id: Psed_2941
symbol: Psed_2941
gene_biotype: protein_coding
description:
  KEGG: scb:SCAB_9041 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR.


ensembl_gene_id: Psed_2942
symbol: Psed_2942
gene_biotype: protein_coding
description:
  KEGG: sro:Sros_2497 putative transcriptional regulator, GntR family; PFAM: HTH transcriptional regulator, GntR; Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; Tetracycline transcriptional regulator, TetR, C-terminal; SMART: HTH transcriptional regulator, GntR.


ensembl_gene_id: Psed_2944
symbol: Psed_2944
gene_biotype: protein_coding
description:
  Pyruvate, water dikinase; KEGG: ach:Achl_0605 pyruvate phosphate dikinase PEP/pyruvate-binding; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile domain.


ensembl_gene_id: Psed_2945
symbol: prfC
gene_biotype: protein_coding
description:
  Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.


ensembl_gene_id: Psed_2948
symbol: Psed_2948
gene_biotype: protein_coding
description:
  Butyryl-CoA dehydrogenase; KEGG: bbt:BBta_3103 putative acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain.


ensembl_gene_id: Psed_2949
symbol: Psed_2949
gene_biotype: protein_coding
description:
  KEGG: hse:Hsero_0938 AraC family transcription regulator protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain.


ensembl_gene_id: Psed_2951
symbol: Psed_2951
gene_biotype: protein_coding
description:
  Formyl-CoA transferase; KEGG: gob:Gobs_0880 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.


ensembl_gene_id: Psed_2952
symbol: Psed_2952
gene_biotype: protein_coding
description:
  PFAM: Carbon monoxide dehydrogenase subunit G; KEGG: gbr:Gbro_4318 carbon monoxide dehydrogenase subunit G.


ensembl_gene_id: Psed_2953
symbol: Psed_2953
gene_biotype: protein_coding
description:
  KEGG: sro:Sros_6595 5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal.


ensembl_gene_id: Psed_2954
symbol: Psed_2954
gene_biotype: protein_coding
description:
  5-oxoprolinase (ATP-hydrolyzing); KEGG: cai:Caci_1877 hydantoinase B/oxoprolinase; PFAM: Hydantoinase B/oxoprolinase.


ensembl_gene_id: Psed_2955
symbol: Psed_2955
gene_biotype: protein_coding
description:
  Transcriptional regulator, IclR family; KEGG: nca:Noca_0687 regulatory proteins, IclR; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal.


ensembl_gene_id: Psed_2956
symbol: Psed_2956
gene_biotype: protein_coding
description:
  Monosaccharide-transporting ATPase; PFAM: ABC transporter-like; KEGG: req:REQ_19950 abc transporter atpase suunit; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_2957
symbol: Psed_2957
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: ABC transporter permease; KEGG: eca:ECA1461 putative sugar ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Psed_2958
symbol: Psed_2958
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: dap:Dacet_0219 periplasmic binding protein/LacI transcriptional regulator.


ensembl_gene_id: Psed_2959
symbol: Psed_2959
gene_biotype: protein_coding
description:
  Carbon-monoxide dehydrogenase (acceptor); KEGG: sti:Sthe_2308 molybdopterin dehydrogenase FAD-binding protein; PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal.


ensembl_gene_id: Psed_2960
symbol: Psed_2960
gene_biotype: protein_coding
description:
  Carbon-monoxide dehydrogenase (acceptor); KEGG: fri:FraEuI1c_5530 (2Fe-2S)-binding domain-containing protein; PFAM: [2Fe-2S]-binding; Ferredoxin.


ensembl_gene_id: Psed_2961
symbol: Psed_2961
gene_biotype: protein_coding
description:
  Carbon-monoxide dehydrogenase (acceptor); KEGG: tro:trd_0579 oxidoreductase, large chain; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead.


ensembl_gene_id: Psed_2968
symbol: Psed_2968
gene_biotype: protein_coding
description:
  Ferredoxin--NAD(+) reductase; KEGG: bpy:Bphyt_4247 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Psed_2969
symbol: Psed_2969
gene_biotype: protein_coding
description:
  KEGG: cwo:Cwoe_1524 ATP-dependent transcriptional regulator, MalT-like, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Tetratricopeptide repeat.


ensembl_gene_id: Psed_2971
symbol: Psed_2971
gene_biotype: protein_coding
description:
  Transcriptional regulator, IclR family; KEGG: msm:MSMEG_2125 glycerol operon regulatory protein; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal.


ensembl_gene_id: Psed_2972
symbol: Psed_2972
gene_biotype: protein_coding
description:
  TIGRFAM: Dihydroxyacetone kinase DhaK, subunit 1; KEGG: gob:Gobs_2347 dihydroxyacetone kinase, DhaK subunit; PFAM: Dak kinase.


ensembl_gene_id: Psed_2973
symbol: Psed_2973
gene_biotype: protein_coding
description:
  KEGG: gob:Gobs_2346 dihydroxyacetone kinase, L subunit; TIGRFAM: Dihydroxyacetone kinase, subunit L; PFAM: Dak phosphatase.


ensembl_gene_id: Psed_2974
symbol: Psed_2974
gene_biotype: protein_coding
description:
  TIGRFAM: Phosphoenolpyruvate-protein phosphotransferase; Dihydroxyacetone kinase, subunit phosphotransferase; KEGG: msm:MSMEG_2121 multiphosphoryl transfer protein (MTP); PFAM: PEP-utilising enzyme; Phosphotransferase system, fructose subfamily IIA component; Phosphotransferase system, phosphocarrier HPr protein; Phosphotransferase system, PEP-utilising enzyme, N-terminal; PEP-utilising enzyme, mobile domain; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: Psed_2976
symbol: Psed_2976
gene_biotype: protein_coding
description:
  Manually curated; PFAM: Flavin reductase-like, FMN-binding; KEGG: gob:Gobs_5034 flavin reductase domain-containing protein FMN-binding protein; SMART: Flavin reductase-like, FMN-binding.


ensembl_gene_id: Psed_2978
symbol: Psed_2978
gene_biotype: protein_coding
description:
  RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: Psed_2979
symbol: Psed_2979
gene_biotype: protein_coding
description:
  PFAM: Poly-beta-hydroxybutyrate polymerase, N-terminal; Alpha/beta hydrolase fold-1; KEGG: nml:Namu_4720 poly-beta-hydroxybutyrate polymerase domain-containing protein.


ensembl_gene_id: Psed_2980
symbol: Psed_2980
gene_biotype: protein_coding
description:
  Helix-turn-helix domain protein; KEGG: nfa:nfa52090 putative DNA-binding protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3.


ensembl_gene_id: Psed_2981
symbol: dtd
gene_biotype: protein_coding
description:
  D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family.


ensembl_gene_id: Psed_2982
symbol: Psed_2982
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase small; KEGG: sen:SACE_1788 rRNA/tRNA methylase; Belongs to the methyltransferase superfamily.


ensembl_gene_id: Psed_2984
symbol: Psed_2984
gene_biotype: protein_coding
description:
  KEGG: mau:Micau_1581 HhH-GPD family protein; TIGRFAM: Conserved hypothetical protein CHP03252, HhH-GPD; PFAM: HhH-GPD domain.


ensembl_gene_id: Psed_2985
symbol: Psed_2985
gene_biotype: protein_coding
description:
  Regulatory protein ArsR; KEGG: fre:Franean1_3539 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR.


ensembl_gene_id: Psed_2987
symbol: psuG
gene_biotype: protein_coding
description:
  Pseudouridine-5'-phosphate glycosidase; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family.


ensembl_gene_id: Psed_2989
symbol: Psed_2989
gene_biotype: protein_coding
description:
  KEGG: rha:RHA1_ro03776 poly(3-hydroxyalkanoic acid) depolymerase; TIGRFAM: Poly(3-hydroxyalkanoate) depolymerase; PFAM: Alpha/beta hydrolase fold-1.


ensembl_gene_id: Psed_2990
symbol: Psed_2990
gene_biotype: protein_coding
description:
  PFAM: Poly-beta-hydroxybutyrate polymerase, N-terminal; KEGG: rop:ROP_36330 polyhydroxyalkanoate synthase.


ensembl_gene_id: Psed_2991
symbol: Psed_2991
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_1795 type III restriction enzyme, res subunit; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal.


ensembl_gene_id: Psed_2992
symbol: Psed_2992
gene_biotype: protein_coding
description:
  TIGRFAM: Cysteine desulfurase-related; KEGG: sen:SACE_1797 cysteine desulfurase; PFAM: Aminotransferase, class V/Cysteine desulfurase.


ensembl_gene_id: Psed_2994
symbol: Psed_2994
gene_biotype: protein_coding
description:
  Protein of unknown function DUF6 transmembrane; PFAM: Drug/metabolite transporter; KEGG: svi:Svir_24340 predicted permease, DMT superfamily.


ensembl_gene_id: Psed_2996
symbol: Psed_2996
gene_biotype: protein_coding
description:
  Monosaccharide-transporting ATPase; PFAM: ABC transporter-like; KEGG: ami:Amir_1504 ABC transporter related; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_2997
symbol: Psed_2997
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: ABC transporter permease; KEGG: ami:Amir_1505 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Psed_3000
symbol: Psed_3000
gene_biotype: protein_coding
description:
  KEGG: kra:Krad_0463 aspartate kinase; TIGRFAM: Aspartate kinase domain; PFAM: Aspartate/glutamate/uridylate kinase; Belongs to the aspartokinase family.


ensembl_gene_id: Psed_3001
symbol: Psed_3001
gene_biotype: protein_coding
description:
  Non-ribosomal peptide synthetase domain protein; SMART: Polyketide synthase, phosphopantetheine-binding; TIGRFAM: Non-ribosomal peptide synthetase C-terminal; Amino acid adenylation; Diaminobutyrate-2-oxoglutarate transaminase; KEGG: aau:AAur_pTC10155 putative non-ribosomal peptide synthetase; PFAM: AMP-dependent synthetase/ligase; Phosphopantetheine-binding; Bacterial transferase hexapeptide repeat; Aminotransferase class-III.


ensembl_gene_id: Psed_3002
symbol: Psed_3002
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sna:Snas_0252 transcriptional regulator, TetR family.


ensembl_gene_id: Psed_3005
symbol: Psed_3005
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_3314 putative surface layer protein; TIGRFAM: YVTN beta-propeller repeat; PFAM: Heat shock protein 70.


ensembl_gene_id: Psed_3007
symbol: Psed_3007
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; KEGG: fal:FRAAL3267 putative transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain.


ensembl_gene_id: Psed_3009
symbol: Psed_3009
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; KEGG: sen:SACE_3310 putative signal transduction histidine kinase.


ensembl_gene_id: Psed_3013
symbol: Psed_3013
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rop:ROP_13030 putative ABC transporter permease protein.


ensembl_gene_id: Psed_3014
symbol: Psed_3014
gene_biotype: protein_coding
description:
  Taurine-transporting ATPase; PFAM: ABC transporter-like; KEGG: rer:RER_40110 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_3017
symbol: Psed_3017
gene_biotype: protein_coding
description:
  Precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase, core; Cobalamin (vitamin B12) biosynthesis CbiT, precorrin-6Y methyltransferase-core; KEGG: sgr:SGR_3528 putative methyltransferase; PFAM: Tetrapyrrole methylase.


ensembl_gene_id: Psed_3018
symbol: Psed_3018
gene_biotype: protein_coding
description:
  Precorrin-4 C11-methyltransferase; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase, core; KEGG: sen:SACE_5945 precorrin-4 C11-methyltransferase; PFAM: Tetrapyrrole methylase.


ensembl_gene_id: Psed_3019
symbol: Psed_3019
gene_biotype: protein_coding
description:
  Precorrin-6x reductase; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobK/CbiJ, precorrin-6x reductase; KEGG: sro:Sros_5596 precorrin-6A reductase; PFAM: Cobalamin (vitamin B12) biosynthesis CobK/CbiJ, precorrin-6x reductase.


ensembl_gene_id: Psed_3020
symbol: Psed_3020
gene_biotype: protein_coding
description:
  precorrin-3B C17-methyltransferase; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobJ/CibH, precorrin-3B C17-methyltransferase, core; Cobalamin (vitamin B12) biosynthesis CobI/CbiL, precorrin-2 C20-methyltransferase, core; KEGG: sro:Sros_5595 precorrin-3B methylase-like protein; PFAM: Tetrapyrrole methylase.


ensembl_gene_id: Psed_3021
symbol: Psed_3021
gene_biotype: protein_coding
description:
  KEGG: nfa:nfa31510 precorrin-8X methylmutase; PFAM: Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase, core.


ensembl_gene_id: Psed_3022
symbol: Psed_3022
gene_biotype: protein_coding
description:
  PFAM: Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; KEGG: amd:AMED_7063 precorrin-3B synthase.


ensembl_gene_id: Psed_3023
symbol: Psed_3023
gene_biotype: protein_coding
description:
  TIGRFAM: Cobaltochelatase, CobN subunit; KEGG: req:REQ_23600 cobaltochelatase CobN; PFAM: CobN/magnesium chelatase.


ensembl_gene_id: Psed_3024
symbol: Psed_3024
gene_biotype: protein_coding
description:
  Maleylacetate reductase; KEGG: vei:Veis_4611 iron-containing alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type.


ensembl_gene_id: Psed_3025
symbol: Psed_3025
gene_biotype: protein_coding
description:
  Dihydropyrimidinase; TIGRFAM: D-hydantoinase; KEGG: cti:RALTA_A2550 dihydropyrimidinase; PFAM: Amidohydrolase 1.


ensembl_gene_id: Psed_3027
symbol: Psed_3027
gene_biotype: protein_coding
description:
  Monosaccharide-transporting ATPase; PFAM: ABC transporter-like; KEGG: nca:Noca_0100 ABC transporter related; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_3029
symbol: Psed_3029
gene_biotype: protein_coding
description:
  GntR domain protein; KEGG: dsh:Dshi_3048 GntR-family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal.


ensembl_gene_id: Psed_3032
symbol: Psed_3032
gene_biotype: protein_coding
description:
  Pyruvate carboxylase; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; KEGG: rop:ROP_29700 acetyl-CoA carboxylase biotin carboxylase subunit; SMART: Biotin carboxylase, C-terminal.


ensembl_gene_id: Psed_3033
symbol: Psed_3033
gene_biotype: protein_coding
description:
  Biotin/lipoyl attachment domain-containing protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: Psed_3034
symbol: Psed_3034
gene_biotype: protein_coding
description:
  KEGG: sti:Sthe_2821 pyruvate carboxylase; PFAM: Carboxylase, conserved domain; Pyruvate carboxyltransferase.


ensembl_gene_id: Psed_3035
symbol: Psed_3035
gene_biotype: protein_coding
description:
  SMART: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, subunit A; KEGG: avi:Avi_7413 ScoB; PFAM: Coenzyme A transferase; Belongs to the 3-oxoacid CoA-transferase family.


ensembl_gene_id: Psed_3037
symbol: Psed_3037
gene_biotype: protein_coding
description:
  ABC-type metal ion transporter, periplasmic subunit; PFAM: ABC transporter metal-binding lipoprotein; KEGG: nfa:nfa24340 putative ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 9 family.


ensembl_gene_id: Psed_3038
symbol: Psed_3038
gene_biotype: protein_coding
description:
  Sulfate-transporting ATPase; PFAM: ABC transporter-like; KEGG: bfa:Bfae_31320 ATPase component of Mn/Zn ABC-type transporter; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_3039
symbol: Psed_3039
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: ABC-3; KEGG: rha:RHA1_ro07269 zinc ABC transporter permease.


ensembl_gene_id: Psed_3040
symbol: Psed_3040
gene_biotype: protein_coding
description:
  KEGG: srt:Srot_1549 DtxR family iron (metal) dependent repressor; PFAM: Iron dependent repressor; Iron dependent repressor, N-terminal; Ferrous iron transporter, FeoA subunit; SMART: Iron dependent repressor, diptheria toxin type; HTH transcriptional regulator, Crp; Ferrous iron transporter, FeoA subunit.


ensembl_gene_id: Psed_3041
symbol: Psed_3041
gene_biotype: protein_coding
description:
  PFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; KEGG: msm:MSMEG_0159 formate dehydrogenase, gamma subunit.


ensembl_gene_id: Psed_3042
symbol: Psed_3042
gene_biotype: protein_coding
description:
  NADH dehydrogenase (quinone); PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; KEGG: msm:MSMEG_0160 formate dehydrogenase, beta subunit; SMART: NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding.


ensembl_gene_id: Psed_3043
symbol: Psed_3043
gene_biotype: protein_coding
description:
  TIGRFAM: Formate dehydrogenase, alpha subunit; PFAM: Molybdopterin oxidoreductase; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; Ferredoxin; 4Fe-4S binding domain; Molybdopterin oxidoreductase, Fe4S4 domain; Molydopterin dinucleotide-binding domain; KEGG: msm:MSMEG_0161 formate dehydrogenase, alpha subunit; SMART: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; Molybdopterin oxidoreductase, Fe4S4 domain.


ensembl_gene_id: Psed_3045
symbol: Psed_3045
gene_biotype: protein_coding
description:
  Regulatory protein MarR; KEGG: scb:SCAB_84441 MarR family regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR.


ensembl_gene_id: Psed_3051
symbol: sigA
gene_biotype: protein_coding
description:
  RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.


ensembl_gene_id: Psed_3057
symbol: dut
gene_biotype: protein_coding
description:
  Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.


ensembl_gene_id: Psed_3062
symbol: Psed_3062
gene_biotype: protein_coding
description:
  TrkA-N domain protein; PFAM: Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; KEGG: sen:SACE_1811 trk system potassium uptake protein.


ensembl_gene_id: Psed_3063
symbol: Psed_3063
gene_biotype: protein_coding
description:
  TrkA-N domain protein; PFAM: Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; KEGG: ami:Amir_1521 TrkA-N domain protein.


ensembl_gene_id: Psed_3065
symbol: Psed_3065
gene_biotype: protein_coding
description:
  PFAM: Deoxyribonuclease/rho motif-related TRAM; KEGG: amd:AMED_2615 23S rRNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.


ensembl_gene_id: Psed_3067
symbol: Psed_3067
gene_biotype: protein_coding
description:
  Tex-like protein; KEGG: fra:Francci3_0217 RNA binding S1; PFAM: Tex-like protein, N-terminal; Ribosomal protein S1, RNA-binding domain; SMART: Resolvase, RNase H-like fold; RNA-binding domain, S1.


ensembl_gene_id: Psed_3068
symbol: Psed_3068
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_2267 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; Belongs to the DEAD box helicase family.


ensembl_gene_id: Psed_3070
symbol: Psed_3070
gene_biotype: protein_coding
description:
  PFAM: Major facilitator superfamily MFS-1; KEGG: rha:RHA1_ro03382 MFS superfamily tartrate symporter.


ensembl_gene_id: Psed_3071
symbol: ilvD-2
gene_biotype: protein_coding
description:
  PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; TIGRFAM: Dihydroxy-acid dehydratase; HAMAP: Dihydroxy-acid dehydratase; KEGG: sen:SACE_1280 dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.


ensembl_gene_id: Psed_3074
symbol: Psed_3074
gene_biotype: protein_coding
description:
  KEGG: kfl:Kfla_6569 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type.


ensembl_gene_id: Psed_3075
symbol: Psed_3075
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase (acetyl-transferring); KEGG: kfl:Kfla_6568 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring); PFAM: Dehydrogenase, E1 component.


ensembl_gene_id: Psed_3076
symbol: Psed_3076
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase (acetyl-transferring); PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; KEGG: kfl:Kfla_6567 transketolase central region; SMART: Transketolase-like, pyrimidine-binding domain.


ensembl_gene_id: Psed_3077
symbol: Psed_3077
gene_biotype: protein_coding
description:
  Dihydrolipoyllysine-residue acetyltransferase; KEGG: kfl:Kfla_6566 catalytic domain of components of various dehydrogenase complexes; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding.


ensembl_gene_id: Psed_3082
symbol: Psed_3082
gene_biotype: protein_coding
description:
  PFAM: Permease, cytosine/purines, uracil, thiamine, allantoin; KEGG: sen:SACE_4525 cytosine/purines/uracil/thiamine/allantoin family permease.


ensembl_gene_id: Psed_3083
symbol: Psed_3083
gene_biotype: protein_coding
description:
  KEGG: sro:Sros_5269 N-acyl-D-amino-acid deacylase; PFAM: D-aminoacylase, C-terminal; Amidohydrolase 1.


ensembl_gene_id: Psed_3085
symbol: Psed_3085
gene_biotype: protein_coding
description:
  PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal; KEGG: gmc:GY4MC1_3873 hydantoinase/oxoprolinase.


ensembl_gene_id: Psed_3087
symbol: Psed_3087
gene_biotype: protein_coding
description:
  PFAM: 4-hydroxyphenylacetate 3-hydroxylase; KEGG: gmc:GY4MC1_1588 4-hydroxyphenylacetate 3-hydroxylase.


ensembl_gene_id: Psed_3088
symbol: Psed_3088
gene_biotype: protein_coding
description:
  PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: art:Arth_3928 reduced coenzyme F420:NADP oxidoreductase.


ensembl_gene_id: Psed_3091
symbol: Psed_3091
gene_biotype: protein_coding
description:
  PFAM: Bacterial transcriptional activator domain; KEGG: ach:Achl_4571 transcriptional activator domain protein.


ensembl_gene_id: Psed_3092
symbol: Psed_3092
gene_biotype: protein_coding
description:
  KEGG: rxy:Rxyl_1858 GntR family transcriptional regulator; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding.


ensembl_gene_id: Psed_3093
symbol: Psed_3093
gene_biotype: protein_coding
description:
  KEGG: rer:RER_54230 catechol 1,2-dioxygenase; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal; Catechol dioxygenase, N-terminal.


ensembl_gene_id: Psed_3094
symbol: Psed_3094
gene_biotype: protein_coding
description:
  SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal; TIGRFAM: Muconate/chloromuconate cycloisomerase; KEGG: rop:ROP_20860 muconate cycloisomerase; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal.


ensembl_gene_id: Psed_3096
symbol: Psed_3096
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nca:Noca_2053 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Psed_3098
symbol: Psed_3098
gene_biotype: protein_coding
description:
  Cytidyltransferase-related domain protein; TIGRFAM: Cytidyltransferase-related; KEGG: sgr:SGR_1806 bifunctional riboflavin kinase/FMN adenylyltransferase; PFAM: FAD synthetase.


ensembl_gene_id: Psed_3099
symbol: Psed_3099
gene_biotype: protein_coding
description:
  Cysteine synthase; KEGG: rha:RHA1_ro00594 cystathionine beta-synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit.


ensembl_gene_id: Psed_3102
symbol: Psed_3102
gene_biotype: protein_coding
description:
  KEGG: msm:MSMEG_4382 dehydrogenase/reductase SDR family protein member 10; PFAM: Short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Psed_3103
symbol: Psed_3103
gene_biotype: protein_coding
description:
  KEGG: kfl:Kfla_5266 epoxide hydrolase domain protein; PFAM: Epoxide hydrolase, N-terminal; Alpha/beta hydrolase fold-1.


ensembl_gene_id: Psed_3105
symbol: Psed_3105
gene_biotype: protein_coding
description:
  Membrane protein AbrB duplication; KEGG: mjl:Mjls_1270 putative ammonia monooxygenase; TIGRFAM: AbrB duplication, membrane protein; PFAM: Putative ammonia monooxygenase.


ensembl_gene_id: Psed_3106
symbol: Psed_3106
gene_biotype: protein_coding
description:
  Xenobiotic-transporting ATPase; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: rha:RHA1_ro05645 bifunctional ABC lipid A transporter: ATP-binding/permease; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_3110
symbol: Psed_3110
gene_biotype: protein_coding
description:
  PFAM: Maritimacin/linocin-M18 bacteriocin protein; KEGG: amd:AMED_6577 linocin_M18 bacteriocin protein.


ensembl_gene_id: Psed_3116
symbol: Psed_3116
gene_biotype: protein_coding
description:
  KEGG: nda:Ndas_3288 PEBP family protein; TIGRFAM: YbhB/YbcL; PFAM: Phosphatidylethanolamine-binding protein PEBP.


ensembl_gene_id: Psed_3117
symbol: Psed_3117
gene_biotype: protein_coding
description:
  Na+/H+ antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.


ensembl_gene_id: Psed_3118
symbol: Psed_3118
gene_biotype: protein_coding
description:
  PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: nfa:nfa34110 putative short chain dehydrogenase; SMART: Polyketide synthase/Fatty acid synthase, KR.


ensembl_gene_id: Psed_3119
symbol: Psed_3119
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sro:Sros_5753 hypothetical protein.


ensembl_gene_id: Psed_3120
symbol: Psed_3120
gene_biotype: protein_coding
description:
  SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; KEGG: tfu:Tfu_0635 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like.


ensembl_gene_id: Psed_3121
symbol: Psed_3121
gene_biotype: protein_coding
description:
  SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; KEGG: tfu:Tfu_0636 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; ABC transporter, transmembrane domain.


ensembl_gene_id: Psed_3122
symbol: Psed_3122
gene_biotype: protein_coding
description:
  KEGG: tfu:Tfu_0637 cytochrome bd ubiquinol oxidase, subunit II; TIGRFAM: Cytochrome d ubiquinol oxidase, subunit II; PFAM: Cytochrome d ubiquinol oxidase, subunit II.


ensembl_gene_id: Psed_3124
symbol: Psed_3124
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_6419 methylmalonyl-CoA mutase; PFAM: Methylmalonyl-CoA mutase, alpha/beta chain, catalytic.


ensembl_gene_id: Psed_3125
symbol: Psed_3125
gene_biotype: protein_coding
description:
  TIGRFAM: Methylmalonyl-CoA mutase, alpha chain, catalytic; Methylmalonyl-CoA mutase, C-terminal; KEGG: amd:AMED_0914 methylmalonyl-CoA mutase; PFAM: Methylmalonyl-CoA mutase, alpha/beta chain, catalytic; Cobalamin (vitamin B12)-binding.


ensembl_gene_id: Psed_3126
symbol: Psed_3126
gene_biotype: protein_coding
description:
  LAO/AO transport system ATPase; TIGRFAM: ArgK protein; PFAM: ArgK protein; KEGG: nda:Ndas_5546 LAO/AO transport system ATPase; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_3128
symbol: Psed_3128
gene_biotype: protein_coding
description:
  HpcH/HpaI aldolase; PFAM: Aldehyde-lyase domain; KEGG: sen:SACE_0699 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Belongs to the HpcH/HpaI aldolase family.


ensembl_gene_id: Psed_3129
symbol: Psed_3129
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function DUF457, transmembrane; KEGG: sen:SACE_6637 membrane-bound metal-dependent hydrolase.


ensembl_gene_id: Psed_3130
symbol: Psed_3130
gene_biotype: protein_coding
description:
  PFAM: Phosphogluconate dehydrogenase, NAD-binding, putative, C-terminal; KEGG: fra:Francci3_1825 hypothetical protein.


ensembl_gene_id: Psed_3133
symbol: Psed_3133
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function DUF1254; Domain of unknown function DUF1214; KEGG: cyn:Cyan7425_2480 protein of unknown function DUF1254.


ensembl_gene_id: Psed_3135
symbol: Psed_3135
gene_biotype: protein_coding
description:
  TIGRFAM: Conserved hypothetical protein CHP03083, actinobacterial-type; KEGG: mav:MAV_0227 hypothetical protein.


ensembl_gene_id: Psed_3137
symbol: Psed_3137
gene_biotype: protein_coding
description:
  Putative F420-dependent oxidoreductase, MSMEG_2906 family; TIGRFAM: F420-dependent oxidoreductase, MSMEG2906; KEGG: svi:Svir_27940 flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase.


ensembl_gene_id: Psed_3139
symbol: Psed_3139
gene_biotype: protein_coding
description:
  KEGG: mrd:Mrad2831_2474 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain.


ensembl_gene_id: Psed_3143
symbol: Psed_3143
gene_biotype: protein_coding
description:
  KEGG: mil:ML5_2272 dead/deah box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal.


ensembl_gene_id: Psed_3144
symbol: Psed_3144
gene_biotype: protein_coding
description:
  PFAM: Signal transduction histidine kinase, internal region; DNA ligase, ATP-dependent, central; KEGG: cai:Caci_5248 DNA polymerase LigD, ligase domain protein.


ensembl_gene_id: Psed_3145
symbol: Psed_3145
gene_biotype: protein_coding
description:
  KEGG: tbi:Tbis_2886 beta-phosphoglucomutase family hydrolase; TIGRFAM: Beta-phosphoglucomutase hydrolase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase.


ensembl_gene_id: Psed_3146
symbol: Psed_3146
gene_biotype: protein_coding
description:
  Kojibiose phosphorylase; KEGG: tcu:Tcur_2817 glycoside hydrolase family 65 central catalytic; PFAM: Glycoside hydrolase, family 65, central catalytic; Glycoside hydrolase, family 65, N-terminal; Glycoside hydrolase, family 65, C-terminal.


ensembl_gene_id: Psed_3147
symbol: Psed_3147
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_5686 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-B/F/G type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 4.


ensembl_gene_id: Psed_3148
symbol: Psed_3148
gene_biotype: protein_coding
description:
  PFAM: DNA helicase, UvrD/REP type; KEGG: ami:Amir_1311 superfamily I DNA and RNA helicase-like protein.


ensembl_gene_id: Psed_3150
symbol: Psed_3150
gene_biotype: protein_coding
description:
  TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type; PFAM: RQC domain; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; KEGG: sen:SACE_3331 ATP-dependent DNA helicase; SMART: RQC domain; DEAD-like helicase, N-terminal; Helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain.


ensembl_gene_id: Psed_3151
symbol: fgd
gene_biotype: protein_coding
description:
  Glucose-6-phosphate dehydrogenase, F420-dependent; Catalyzes the coenzyme F420-dependent oxidation of glucose 6- phosphate (G6P) to 6-phosphogluconolactone.


ensembl_gene_id: Psed_3154
symbol: Psed_3154
gene_biotype: protein_coding
description:
  Transcriptional regulator, SARP family; PFAM: Bacterial transcriptional activator domain; KEGG: cwo:Cwoe_4971 transcriptional regulator, SARP family.


ensembl_gene_id: Psed_3156
symbol: Psed_3156
gene_biotype: protein_coding
description:
  PFAM: Sulphate transporter/antisigma-factor antagonist STAS; KEGG: scb:SCAB_63591 hypothetical protein.


ensembl_gene_id: Psed_3157
symbol: Psed_3157
gene_biotype: protein_coding
description:
  Benzoylformate decarboxylase; KEGG: tcu:Tcur_0107 thiamine pyrophosphate protein domain-containing protein TPP-binding protein; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain.


ensembl_gene_id: Psed_3159
symbol: Psed_3159
gene_biotype: protein_coding
description:
  PFAM: CDP-alcohol phosphatidyltransferase; KEGG: ami:Amir_5358 CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: Psed_3160
symbol: Psed_3160
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_5356 FHA domain containing protein; PFAM: Forkhead-associated (FHA) domain; SMART: Forkhead-associated (FHA) domain.


ensembl_gene_id: Psed_3162
symbol: Psed_3162
gene_biotype: protein_coding
description:
  Regulatory protein MerR; KEGG: req:REQ_24440 MerR family transcriptional regulator; manually curated; SMART: HTH transcriptional regulator, MerR.


ensembl_gene_id: Psed_3166
symbol: Psed_3166
gene_biotype: protein_coding
description:
  Protein of unknown function DUF21; KEGG: amd:AMED_4974 CBS domain-containing protein; PFAM: Domain of unknown function DUF21; Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core.


ensembl_gene_id: Psed_3167
symbol: Psed_3167
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated domain; KEGG: ami:Amir_5344 protein of unknown function DUF21.


ensembl_gene_id: Psed_3169
symbol: coaA
gene_biotype: protein_coding
description:
  TIGRFAM: Bacterial pantothenate kinase; HAMAP: Bacterial pantothenate kinase; KEGG: kfl:Kfla_6049 pantothenate kinase.


ensembl_gene_id: Psed_3170
symbol: Psed_3170
gene_biotype: protein_coding
description:
  Regulatory protein MarR; KEGG: cai:Caci_2307 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR.


ensembl_gene_id: Psed_3172
symbol: Psed_3172
gene_biotype: protein_coding
description:
  KEGG: svi:Svir_32540 protein kinase family protein; PFAM: Serine/threonine-protein kinase-like domain; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain.


ensembl_gene_id: Psed_3179
symbol: Psed_3179
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; KEGG: sma:SAV_2438 two-component system response regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal.


ensembl_gene_id: Psed_3180
symbol: Psed_3180
gene_biotype: protein_coding
description:
  Histidine kinase; KEGG: sco:SCO5824 two-component sensor; PFAM: Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain.


ensembl_gene_id: Psed_3187
symbol: Psed_3187
gene_biotype: protein_coding
description:
  KEGG: fal:FRAAL6172 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR.


ensembl_gene_id: Psed_3188
symbol: Psed_3188
gene_biotype: protein_coding
description:
  Ring-opening amidohydrolase; Responsible for the hydrolysis of cyanuric acid, an intermediate formed during catabolism of s-triazine based compounds in herbicides such as atrazine and polymers such as melamine. Catalyzes the hydrolytic opening of the s-triazine ring of cyanuric acid (2,4,6- trihydroxy-s-triazine) to yield carbon dioxide and carboxybiuret, which spontaneously decarboxylates to biuret.


ensembl_gene_id: Psed_3190
symbol: Psed_3190
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: ABC transporter permease; KEGG: rhi:NGR_c06530 hypothetical ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Psed_3192
symbol: Psed_3192
gene_biotype: protein_coding
description:
  Flavanone 3-dioxygenase; KEGG: mpo:Mpop_4351 2OG-Fe(II) oxygenase; PFAM: Oxoglutarate/iron-dependent oxygenase; Belongs to the iron/ascorbate-dependent oxidoreductase family.


ensembl_gene_id: Psed_3195
symbol: Psed_3195
gene_biotype: protein_coding
description:
  KEGG: fre:Franean1_5399 FAD linked oxidase domain-containing protein; PFAM: FAD linked oxidase, N-terminal; Berberine/berberine-like.


ensembl_gene_id: Psed_3200
symbol: Psed_3200
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function DUF2249; KEGG: msv:Mesil_0266 protein of unknown function DUF2249.


ensembl_gene_id: Psed_3203
symbol: Psed_3203
gene_biotype: protein_coding
description:
  KEGG: sna:Snas_5097 transcriptional regulator, MerR family; PFAM: HTH transcriptional regulator, MerR; Transcription regulator MerR, DNA binding; SMART: HTH transcriptional regulator, MerR.


ensembl_gene_id: Psed_3205
symbol: Psed_3205
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: fre:Franean1_4451 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Psed_3206
symbol: Psed_3206
gene_biotype: protein_coding
description:
  Polyamine-transporting ATPase; PFAM: ABC transporter-like; KEGG: fre:Franean1_4452 ABC transporter related; SMART: ATPase, AAA+ type, core; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Psed_3207
symbol: Psed_3207
gene_biotype: protein_coding
description:
  KEGG: rce:RC1_3257 alpha-methylacyl-CoA racemase; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.


ensembl_gene_id: Psed_3208
symbol: Psed_3208
gene_biotype: protein_coding
description:
  KEGG: axy:AXYL_05906 CoA-transferase family III family protein 46; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.


ensembl_gene_id: Psed_3209
symbol: Psed_3209
gene_biotype: protein_coding
description:
  KEGG: chy:CHY_1745 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal.


ensembl_gene_id: Psed_3211
symbol: Psed_3211
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: rer:RER_07920 hypothetical protein.


ensembl_gene_id: Psed_3212
symbol: Psed_3212
gene_biotype: protein_coding
description:
  Formyl-CoA transferase; KEGG: mav:MAV_4237 YfdE protein; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.


ensembl_gene_id: Psed_3213
symbol: Psed_3213
gene_biotype: protein_coding
description:
  PFAM: Crotonase, core; KEGG: fal:FRAAL3799 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: Psed_3215
symbol: Psed_3215
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: mxa:MXAN_2145 TetR family transcriptional regulator.


ensembl_gene_id: Psed_3217
symbol: Psed_3217
gene_biotype: protein_coding
description:
  SMP-30/Gluconolaconase/LRE-like region-containing protein; PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: fri:FraEuI1c_5766 SMP-30/gluconolaconase/LRE-like region-containing protein.


ensembl_gene_id: Psed_3221
symbol: Psed_3221
gene_biotype: protein_coding
description:
  KEGG: hne:HNE_1286 cyclododecanone monooxygenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Psed_3226
symbol: Psed_3226
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: rop:ROP_13230 putative TetR family transcriptional regulator.


ensembl_gene_id: Psed_3227
symbol: Psed_3227
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: rmr:Rmar_2200 transcriptional regulator, TetR family.


ensembl_gene_id: Psed_3229
symbol: Psed_3229
gene_biotype: protein_coding
description:
  KEGG: mav:MAV_5241 monooxygenase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal.


ensembl_gene_id: Psed_3232
symbol: Psed_3232
gene_biotype: protein_coding
description:
  KEGG: swi:Swit_3075 5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal.


ensembl_gene_id: Psed_3235
symbol: Psed_3235
gene_biotype: protein_coding
description:
  KEGG: cwo:Cwoe_4447 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; Belongs to the IlvD/Edd family.


ensembl_gene_id: Psed_3236
symbol: Psed_3236
gene_biotype: protein_coding
description:
  PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: msm:MSMEG_5845 putative C4-dicarboxylate transporter.


ensembl_gene_id: Psed_3239
symbol: Psed_3239
gene_biotype: protein_coding
description:
  Regulatory protein ArsR; KEGG: rer:RER_59200 nitrile hydratase regulator 2; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR.


ensembl_gene_id: Psed_3240
symbol: Psed_3240
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: aau:AAur_pTC20138 putative branched-chain amino acid ABC transporter.


ensembl_gene_id: Psed_3253
symbol: Psed_3253
gene_biotype: protein_coding
description:
  Transcriptional regulator, PadR-like family; PFAM: Transcription regulator PadR N-terminal-like; KEGG: fri:FraEuI1c_3813 transcriptional regulator, PadR-like family.


ensembl_gene_id: Psed_3258
symbol: Psed_3258
gene_biotype: protein_coding
description:
  Regulatory protein MarR; KEGG: nml:Namu_3635 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR.


ensembl_gene_id: Psed_3263
symbol: Psed_3263
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_4650 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain.


ensembl_gene_id: Psed_3267
symbol: Psed_3267
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rer:RER_49610 hypothetical protein.


ensembl_gene_id: Psed_3268
symbol: Psed_3268
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; KEGG: nfa:nfa43930 putative transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain.


ensembl_gene_id: Psed_3270
symbol: Psed_3270
gene_biotype: protein_coding
description:
  Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.


ensembl_gene_id: Psed_3271
symbol: Psed_3271
gene_biotype: protein_coding
description:
  PFAM: BFD-like [2Fe-2S]-binding domain; KEGG: sna:Snas_5033 BFD domain-containing protein (2Fe-2S)-binding domain-containing protein.


ensembl_gene_id: Psed_3272
symbol: Psed_3272
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_3255 ATP-dependent DNA ligase; TIGRFAM: DNA polymerase LigD, polymerase domain; DNA ligase D, 3'-phosphoesterase domain; PFAM: DNA primase, small subunit; DNA ligase, ATP-dependent, central.


ensembl_gene_id: Psed_3273
symbol: Psed_3273
gene_biotype: protein_coding
description:
  PFAM: Glycerophosphoryl diester phosphodiesterase; KEGG: ami:Amir_3412 glycerophosphoryl diester phosphodiesterase.


ensembl_gene_id: Psed_3274
symbol: Psed_3274
gene_biotype: protein_coding
description:
  PFAM: Major facilitator superfamily MFS-1; KEGG: nml:Namu_0574 major facilitator superfamily protein.


ensembl_gene_id: Psed_3275
symbol: rbpA
gene_biotype: protein_coding
description:
  Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.


ensembl_gene_id: Psed_3276
symbol: Psed_3276
gene_biotype: protein_coding
description:
  Dolichyl-phosphate beta-D-mannosyltransferase; KEGG: svi:Svir_21780 glycosyl transferase; PFAM: Glycosyl transferase, family 2.


ensembl_gene_id: Psed_3277
symbol: lnt
gene_biotype: protein_coding
description:
  Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.


ensembl_gene_id: Psed_3278
symbol: Psed_3278
gene_biotype: protein_coding
description:
  LmbE family protein; PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; KEGG: req:REQ_37880 gpi deacetylase.


ensembl_gene_id: Psed_3282
symbol: Psed_3282
gene_biotype: protein_coding
description:
  PFAM: Peptidase M24, structural domain; Creatinase; KEGG: amd:AMED_4873 X-Pro dipeptidase; Belongs to the peptidase M24B family.


ensembl_gene_id: Psed_3283
symbol: Psed_3283
gene_biotype: protein_coding
description:
  5'-3' exonuclease, resolvase-like domain-containing protein; KEGG: ami:Amir_2257 5'-3' exonuclease; PFAM: 5'-3' exonuclease, alpha-helical arch, N-terminal; 5'-3' exonuclease, SAM-fold domain; SMART: 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2.


ensembl_gene_id: Psed_3285
symbol: Psed_3285
gene_biotype: protein_coding
description:
  DEAD/DEAH box helicase domain protein; KEGG: sen:SACE_2265 putative ATP-dependent RNA helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; DSH, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal.


ensembl_gene_id: Psed_3286
symbol: tatC
gene_biotype: protein_coding
description:
  Sec-independent protein translocase, TatC subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.


ensembl_gene_id: Psed_3287
symbol: tatA
gene_biotype: protein_coding
description:
  Sec-independent protein translocase protein tatA/E-like protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.


ensembl_gene_id: Psed_3293
symbol: pafA
gene_biotype: protein_coding
description:
  Proteasome accessory factor PafA; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side- chain amino group of a substrate lysine.


ensembl_gene_id: Psed_3294
symbol: Psed_3294
gene_biotype: protein_coding
description:
  Phosphoesterase PA-phosphatase related protein; KEGG: sen:SACE_2253 putative glycerophosphatase; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; Diacylglycerol kinase, catalytic domain; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; Diacylglycerol kinase, catalytic domain.


ensembl_gene_id: Psed_3296
symbol: Psed_3296
gene_biotype: protein_coding
description:
  KEGG: nda:Ndas_4113 molybdopterin oxidoreductase Fe4s4 region; PFAM: Molybdopterin oxidoreductase, Fe4S4 domain; Ferredoxin; 4Fe-4S binding domain; SMART: Molybdopterin oxidoreductase, Fe4S4 domain.


ensembl_gene_id: Psed_3297
symbol: Psed_3297
gene_biotype: protein_coding
description:
  KEGG: scb:SCAB_16891 respiratory chain oxidoreductase; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; NADH:ubiquinone oxidoreductase, 24kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; SMART: NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding.


ensembl_gene_id: Psed_3298
symbol: Psed_3298
gene_biotype: protein_coding
description:
  Nitrate reductase; Manually curated; KEGG: sma:SAV_1834 formate dehydrogenase, major subunit (formate dehydrogenase alpha subunit); PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding domain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: Psed_3299
symbol: Psed_3299
gene_biotype: protein_coding
description:
  Molybdopterin-guanine dinucleotide biosynthesis protein A-like protein; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor; Belongs to the MobA family.


ensembl_gene_id: Psed_3300
symbol: fdhD
gene_biotype: protein_coding
description:
  Protein fdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.


ensembl_gene_id: Psed_3301
symbol: Psed_3301
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sro:Sros_0848 hypothetical protein.


ensembl_gene_id: Psed_3302
symbol: Psed_3302
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sen:SACE_0780 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Psed_3303
symbol: prcA
gene_biotype: protein_coding
description:
  Proteasome, alpha subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1A family.


ensembl_gene_id: Psed_3304
symbol: prcB
gene_biotype: protein_coding
description:
  Proteasome, beta subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1B family.


ensembl_gene_id: Psed_3305
symbol: pup
gene_biotype: protein_coding
description:
  Ubiquitin-like protein pup; Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation.


ensembl_gene_id: Psed_3306
symbol: Psed_3306
gene_biotype: protein_coding
description:
  Proteasome accessory factor PafA2; KEGG: ami:Amir_2239 protein of unknown function DUF245 domain protein; TIGRFAM: Pup deamidase; PFAM: Pup ligase/deamidase.


ensembl_gene_id: Psed_3308
symbol: Psed_3308
gene_biotype: protein_coding
description:
  TIGRFAM: Dihydrolipoamide dehydrogenase; KEGG: kfl:Kfla_3571 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation.


ensembl_gene_id: Psed_3309
symbol: Psed_3309
gene_biotype: protein_coding
description:
  Regulatory protein MarR; KEGG: kra:Krad_2941 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR.


ensembl_gene_id: Psed_3310
symbol: Psed_3310
gene_biotype: protein_coding
description:
  KEGG: gob:Gobs_1264 YceI family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SMART: Lipid/polyisoprenoid-binding, YceI-like; Belongs to the UPF0312 family.


ensembl_gene_id: Psed_3311
symbol: Psed_3311
gene_biotype: protein_coding
description:
  Short-chain dehydrogenase/reductase SDR; KEGG: mbt:JTY_1080 putative oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Psed_3312
symbol: Psed_3312
gene_biotype: protein_coding
description:
  KEGG: mab:MAB_0479 putative regulatory protein MarR; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR.


ensembl_gene_id: Psed_3314
symbol: Psed_3314
gene_biotype: protein_coding
description:
  SMART: Helix-turn-helix, AraC type, DNA binding domain; KEGG: msm:MSMEG_5911 AraC family protein transcriptional regulator.


ensembl_gene_id: Psed_3315
symbol: Psed_3315
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: fal:FRAAL5706 quinone binding protein.


ensembl_gene_id: Psed_3316
symbol: Psed_3316
gene_biotype: protein_coding
description:
  KEGG: fri:FraEuI1c_4888 transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; ATPase, AAA+ type, core.


ensembl_gene_id: Psed_3318
symbol: Psed_3318
gene_biotype: protein_coding
description:
  YceI family protein; KEGG: sro:Sros_0172 hypothetical protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SMART: Lipid/polyisoprenoid-binding, YceI-like; Belongs to the UPF0312 family.


ensembl_gene_id: Psed_3319
symbol: arc
gene_biotype: protein_coding
description:
  Proteasome ATPase; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis.


ensembl_gene_id: Psed_3320
symbol: Psed_3320
gene_biotype: protein_coding
description:
  tRNA (adenine-N(1)-)-methyltransferase; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA.


ensembl_gene_id: Psed_3323
symbol: hisG
gene_biotype: protein_coding
description:
  ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Long subfamily.


ensembl_gene_id: Psed_3324
symbol: Psed_3324
gene_biotype: protein_coding
description:
  KEGG: nml:Namu_2980 phosphoribosyl-ATP diphosphatase; TIGRFAM: Phosphoribosyl-ATP pyrophosphohydrolase; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase-like; Belongs to the PRA-PH family.


ensembl_gene_id: Psed_3325
symbol: Psed_3325
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_2212 HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase.


ensembl_gene_id: Psed_3326
symbol: Psed_3326
gene_biotype: protein_coding
description:
  Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.


ensembl_gene_id: Psed_3328
symbol: Psed_3328
gene_biotype: protein_coding
description:
  Major facilitator superfamily MFS_1; KEGG: rer:RER_31910 MFS transporter; manually curated; PFAM: Major facilitator superfamily MFS-1.


ensembl_gene_id: Psed_3330
symbol: mshC
gene_biotype: protein_coding
description:
  cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Catalyzes the ATP-dependent condensation of GlcN-Ins and L- cysteine to form L-Cys-GlcN-Ins; Belongs to the class-I aminoacyl-tRNA synthetase family. MshC subfamily.


ensembl_gene_id: Psed_3334
symbol: Psed_3334
gene_biotype: protein_coding
description:
  KEGG: nml:Namu_0550 von Willebrand factor type A; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A.


ensembl_gene_id: Psed_3338
symbol: Psed_3338
gene_biotype: protein_coding
description:
  KEGG: sna:Snas_4544 transcriptional repressor, CopY family; manually curated; PFAM: Penicillinase repressor.


ensembl_gene_id: Psed_3339
symbol: Psed_3339
gene_biotype: protein_coding
description:
  ErfK/YbiS/YcfS/YnhG family protein; PFAM: YkuD domain; KEGG: amd:AMED_4234 putative secreted protein.


ensembl_gene_id: Psed_3340
symbol: Psed_3340
gene_biotype: protein_coding
description:
  KEGG: gob:Gobs_1801 EmrB/QacA subfamily drug resistance transporter; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1.


ensembl_gene_id: Psed_3341
symbol: Psed_3341
gene_biotype: protein_coding
description:
  TIGRFAM: Luciferase-like, F420-dependent oxidoreductase, MSMEG4141, predicted; KEGG: rha:RHA1_ro02439 hypothetical protein.


ensembl_gene_id: Psed_3343
symbol: Psed_3343
gene_biotype: protein_coding
description:
  KEGG: tbi:Tbis_2237 DNA-directed DNA polymerase; PFAM: DNA-directed DNA polymerase, family A, palm domain; SMART: DNA-directed DNA polymerase, family A, palm domain.


ensembl_gene_id: Psed_3345
symbol: speE
gene_biotype: protein_coding
description:
  S-adenosylmethionine decarboxylase proenzyme; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine; Belongs to the prokaryotic AdoMetDC family. Type 1 subfamily.


ensembl_gene_id: Psed_3346
symbol: Psed_3346
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_5654 Orn/DAP/Arg decarboxylase 2; PFAM: Orn/DAP/Arg decarboxylase 2, N-terminal; Orn/DAP/Arg decarboxylase 2, C-terminal; Belongs to the Orn/Lys/Arg decarboxylase class-II family.


ensembl_gene_id: Psed_3347
symbol: Psed_3347
gene_biotype: protein_coding
description:
  PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: fri:FraEuI1c_2912 pyridoxamine 5'-phosphate oxidase-related FMN-binding protein.


ensembl_gene_id: Psed_3348
symbol: Psed_3348
gene_biotype: protein_coding
description:
  PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: pla:Plav_0925 acyl-CoA dehydrogenase domain-containing protein.


ensembl_gene_id: Psed_3349
symbol: Psed_3349
gene_biotype: protein_coding
description:
  PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: msp:Mspyr1_45870 acyl-CoA dehydrogenase.


ensembl_gene_id: Psed_3350
symbol: Psed_3350
gene_biotype: protein_coding
description:
  KEGG: svi:Svir_30180 succinate semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: Psed_3351
symbol: Psed_3351
gene_biotype: protein_coding
description:
  PFAM: Cobalamin (vitamin B12) biosynthesis CbiM; KEGG: sen:SACE_3840 cobalamin (vitamin B12) biosynthesis CbiM protein.


ensembl_gene_id: Psed_3353
symbol: Psed_3353
gene_biotype: protein_coding
description:
  Cobalt ABC transporter, inner membrane subunit CbiQ; KEGG: sen:SACE_3838 cobalt ABC transporter permease; TIGRFAM: Cobalt ABC transporter CbiQ, permease subunit; PFAM: Cobalt transport protein.


ensembl_gene_id: Psed_3354
symbol: Psed_3354
gene_biotype: protein_coding
description:
  Cobalt ABC transporter, ATPase subunit; SMART: ATPase, AAA+ type, core; TIGRFAM: Cobalt transport protein ATP-binding subunit; KEGG: sen:SACE_3837 cobalt ABC transporter ATP binding protein; PFAM: ABC transporter-like.


ensembl_gene_id: Psed_3356
symbol: Psed_3356
gene_biotype: protein_coding
description:
  Protein of unknown function DUF107; PFAM: Nodulation efficiency, NfeD; KEGG: sen:SACE_3782 membrane protein implicated in regulation of membrane protease activity.


ensembl_gene_id: Psed_3361
symbol: Psed_3361
gene_biotype: protein_coding
description:
  PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: gbr:Gbro_1699 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR.


ensembl_gene_id: Psed_3366
symbol: Psed_3366
gene_biotype: protein_coding
description:
  KEGG: tbi:Tbis_2518 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal.


ensembl_gene_id: Psed_3368
symbol: Psed_3368
gene_biotype: protein_coding
description:
  Integrase family protein; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; KEGG: kfl:Kfla_3384 integrase family protein; Belongs to the 'phage' integrase family.


ensembl_gene_id: Psed_3369
symbol: hemH
gene_biotype: protein_coding
description:
  Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.


ensembl_gene_id: Psed_3370
symbol: Psed_3370
gene_biotype: protein_coding
description:
  Enoyl-(acyl-carrier-protein) reductase (NADH); KEGG: sen:SACE_3786 enoyl-(acyl carrier protein) reductase.


ensembl_gene_id: Psed_3371
symbol: Psed_3371
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) reductase; SMART: Polyketide synthase/Fatty acid synthase, KR; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; KEGG: gob:Gobs_2104 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Psed_3372
symbol: Psed_3372
gene_biotype: protein_coding
description:
  Von Willebrand factor type A; KEGG: rer:RER_30730 hypothetical protein; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A.


ensembl_gene_id: Psed_3374
symbol: Psed_3374
gene_biotype: protein_coding
description:
  ATPase associated with various cellular activities AAA_3; PFAM: ATPase, AAA-3; KEGG: amd:AMED_4951 MoxR-like ATPase.


ensembl_gene_id: Psed_3377
symbol: Psed_3377
gene_biotype: protein_coding
description:
  Aconitate hydratase 1; TIGRFAM: Aconitase/iron regulatory protein 2; KEGG: amd:AMED_4955 aconitate hydratase 1; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel.


ensembl_gene_id: Psed_3380
symbol: egtD
gene_biotype: protein_coding
description:
  Methyltransferase; Catalyzes the SAM-dependent triple methylation of the alpha- amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine; Belongs to the methyltransferase superfamily. EgtD family.


ensembl_gene_id: Psed_3381
symbol: egtC
gene_biotype: protein_coding
description:
  Conserved hypothetical protein CHP03442; Catalyzes the hydrolysis of the gamma-glutamyl amide bond of hercynyl-gamma-L-glutamyl-L-cysteine sulfoxide to produce hercynylcysteine sulfoxide, a step in the biosynthesis pathway of ergothioneine.


ensembl_gene_id: Psed_3382
symbol: egtB
gene_biotype: protein_coding
description:
  Conserved hypothetical protein CHP03440; Catalyzes the oxidative sulfurization of hercynine (N- alpha,N-alpha,N-alpha-trimethyl-L-histidine) into hercynyl-gamma-L- glutamyl-L-cysteine sulfoxide, a step in the biosynthesis pathway of ergothioneine; Belongs to the EgtB family.


ensembl_gene_id: Psed_3383
symbol: egtA
gene_biotype: protein_coding
description:
  Glutamate/cysteine ligase family protein; Catalyzes the synthesis of gamma-glutamylcysteine (gamma-GC). This compound is used as substrate for the biosynthesis of the low- molecular thiol compound ergothioneine.


ensembl_gene_id: Psed_3384
symbol: Psed_3384
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ami:Amir_2120 transcriptional regulator, TetR family.


ensembl_gene_id: Psed_3385
symbol: Psed_3385
gene_biotype: protein_coding
description:
  KEGG: kfl:Kfla_0168 drug resistance transporter, EmrB/QacA subfamily; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1.


ensembl_gene_id: Psed_3388
symbol: Psed_3388
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_2187 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_3389
symbol: Psed_3389
gene_biotype: protein_coding
description:
  Carbonyl reductase (NADPH); KEGG: nfa:nfa34890 3-ketoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Psed_3392
symbol: Psed_3392
gene_biotype: protein_coding
description:
  PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: kfl:Kfla_0317 adenylate/guanylate cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase.


ensembl_gene_id: Psed_3394
symbol: Psed_3394
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_5149 SUF system FeS assembly protein, NifU family; TIGRFAM: SUF system FeS cluster assembly, SufU scaffold; PFAM: NIF system FeS cluster assembly, NifU, N-terminal.


ensembl_gene_id: Psed_3395
symbol: Psed_3395
gene_biotype: protein_coding
description:
  Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.


ensembl_gene_id: Psed_3396
symbol: Psed_3396
gene_biotype: protein_coding
description:
  TIGRFAM: ATPase SufC, SUF system FeS cluster assembly; PFAM: ABC transporter-like; KEGG: amd:AMED_2832 Fe-S cluster assembly ATP-binding protein; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_3397
symbol: Psed_3397
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_2175 FeS assembly protein; TIGRFAM: SUF system FeS cluster assembly, SufD; PFAM: SUF system FeS cluster assembly, SufBD.


ensembl_gene_id: Psed_3398
symbol: Psed_3398
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_5154 FeS assembly protein SufB; TIGRFAM: SUF system FeS cluster assembly, SufB; PFAM: SUF system FeS cluster assembly, SufBD.


ensembl_gene_id: Psed_3401
symbol: Psed_3401
gene_biotype: protein_coding
description:
  Fe(3+)-transporting ATPase; PFAM: ABC transporter-like; KEGG: ami:Amir_5162 ABC transporter related; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_3403
symbol: Psed_3403
gene_biotype: protein_coding
description:
  Cytochrome oxidase assembly; PFAM: Heme A synthase/Protoheme IX farnesyltransferase; KEGG: ami:Amir_5168 cytochrome oxidase assembly.


ensembl_gene_id: Psed_3404
symbol: Psed_3404
gene_biotype: protein_coding
description:
  NADPH:quinone reductase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: sen:SACE_2164 putative quinone oxidoreductase; SMART: Polyketide synthase, enoylreductase.


ensembl_gene_id: Psed_3405
symbol: ctaB
gene_biotype: protein_coding
description:
  Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.


ensembl_gene_id: Psed_3406
symbol: Psed_3406
gene_biotype: protein_coding
description:
  Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.


ensembl_gene_id: Psed_3407
symbol: tal
gene_biotype: protein_coding
description:
  Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.


ensembl_gene_id: Psed_3409
symbol: zwf
gene_biotype: protein_coding
description:
  Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.


ensembl_gene_id: Psed_3413
symbol: purT
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase 2; Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate; Belongs to the PurK/PurT family.


ensembl_gene_id: Psed_3415
symbol: rbpA-2
gene_biotype: protein_coding
description:
  Electron transport protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.


ensembl_gene_id: Psed_3416
symbol: Psed_3416
gene_biotype: protein_coding
description:
  Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.


ensembl_gene_id: Psed_3417
symbol: tpiA
gene_biotype: protein_coding
description:
  Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.


ensembl_gene_id: Psed_3418
symbol: pgk
gene_biotype: protein_coding
description:
  HAMAP: Phosphoglycerate kinase; KEGG: svi:Svir_15880 phosphoglycerate kinase; PFAM: Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.


ensembl_gene_id: Psed_3419
symbol: Psed_3419
gene_biotype: protein_coding
description:
  SMART: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: sro:Sros_6038 glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.


ensembl_gene_id: Psed_3421
symbol: Psed_3421
gene_biotype: protein_coding
description:
  Uncharacterized protein family UPF0052; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.


ensembl_gene_id: Psed_3423
symbol: uvrC
gene_biotype: protein_coding
description:
  UvrABC system protein C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.


ensembl_gene_id: Psed_3425
symbol: Psed_3425
gene_biotype: protein_coding
description:
  PFAM: Haloacid dehalogenase-like hydrolase; KEGG: nda:Ndas_4869 haloacid dehalogenase domain protein hydrolase.


ensembl_gene_id: Psed_3427
symbol: ribH
gene_biotype: protein_coding
description:
  6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.


ensembl_gene_id: Psed_3428
symbol: ribBA-2
gene_biotype: protein_coding
description:
  3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.


ensembl_gene_id: Psed_3429
symbol: Psed_3429
gene_biotype: protein_coding
description:
  Riboflavin synthase, alpha subunit; TIGRFAM: Lumazine-binding protein; KEGG: sgr:SGR_6090 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein.


ensembl_gene_id: Psed_3430
symbol: Psed_3430
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.


ensembl_gene_id: Psed_3431
symbol: Psed_3431
gene_biotype: protein_coding
description:
  TIGRFAM: Ribulose-phosphate 3-epimerase; KEGG: svi:Svir_15700 ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.


ensembl_gene_id: Psed_3432
symbol: Psed_3432
gene_biotype: protein_coding
description:
  PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; NusB/RsmB/TIM44; KEGG: sen:SACE_2114 ribosomal RNA small subunit methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.


ensembl_gene_id: Psed_3433
symbol: fmt
gene_biotype: protein_coding
description:
  Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.


ensembl_gene_id: Psed_3434
symbol: def
gene_biotype: protein_coding
description:
  Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.


ensembl_gene_id: Psed_3435
symbol: priA
gene_biotype: protein_coding
description:
  Primosomal protein N' (replication factor Y) - superfamily II helicase-like protein; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.


ensembl_gene_id: Psed_3436
symbol: Psed_3436
gene_biotype: protein_coding
description:
  KEGG: gob:Gobs_0948 geranylgeranyl reductase; TIGRFAM: Geranylgeranyl reductase, plant/prokaryotic; PFAM: FAD dependent oxidoreductase.


ensembl_gene_id: Psed_3438
symbol: Psed_3438
gene_biotype: protein_coding
description:
  PFAM: Cupin 2, conserved barrel; KEGG: gob:Gobs_3405 cupin 2 conserved barrel domain-containing protein.


ensembl_gene_id: Psed_3446
symbol: Psed_3446
gene_biotype: protein_coding
description:
  PFAM: Ferritin/Dps protein; KEGG: sna:Snas_3834 ferritin Dps family protein; Belongs to the Dps family.


ensembl_gene_id: Psed_3449
symbol: Psed_3449
gene_biotype: protein_coding
description:
  KEGG: sma:SAV_1892 NADH dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Psed_3456
symbol: Psed_3456
gene_biotype: protein_coding
description:
  Cyclic nucleotide-binding protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Cyclic nucleotide-binding domain; KEGG: sro:Sros_4028 thioredoxin-disulfide reductase; SMART: Cyclic nucleotide-binding domain.


ensembl_gene_id: Psed_3457
symbol: Psed_3457
gene_biotype: protein_coding
description:
  KEGG: nca:Noca_2345 hypothetical protein; TIGRFAM: Polyphosphate:nucleotide phosphotransferase, PPK2; PFAM: Polyphosphate kinase-2-related.


ensembl_gene_id: Psed_3460
symbol: Psed_3460
gene_biotype: protein_coding
description:
  Formaldehyde dehydrogenase, glutathione-independent; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; manually curated; KEGG: kra:Krad_3959 formaldehyde dehydrogenase glutathione-independent; TIGRFAM: Formaldehyde dehydrogenase, glutathione-independent.


ensembl_gene_id: Psed_3461
symbol: Psed_3461
gene_biotype: protein_coding
description:
  KEGG: ava:Ava_C0139 transport-associated protein; PFAM: Transport-associated; SMART: Transport-associated and nodulation domain, bacteria.


ensembl_gene_id: Psed_3462
symbol: Psed_3462
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose-5-phosphate synthase; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, N-terminal; Transketolase, C-terminal; KEGG: fra:Francci3_1278 transketolase; SMART: Transketolase-like, pyrimidine-binding domain.


ensembl_gene_id: Psed_3467
symbol: Psed_3467
gene_biotype: protein_coding
description:
  Integrase family protein; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; KEGG: gbr:Gbro_4728 integrase family protein; Belongs to the 'phage' integrase family.


ensembl_gene_id: Psed_3468
symbol: Psed_3468
gene_biotype: protein_coding
description:
  Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: rer:pREL1_0294 putative transposase; Belongs to the 'phage' integrase family.


ensembl_gene_id: Psed_3473
symbol: Psed_3473
gene_biotype: protein_coding
description:
  KEGG: msm:MSMEG_2280 pyruvate dehydrogenase; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Belongs to the TPP enzyme family.


ensembl_gene_id: Psed_3478
symbol: Psed_3478
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_5363 RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily; TIGRFAM: RNA polymerase sigma-B/F/G type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 4; Belongs to the sigma-70 factor family.


ensembl_gene_id: Psed_3480
symbol: Psed_3480
gene_biotype: protein_coding
description:
  Thioredoxin; KEGG: rha:RHA1_ro06703 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain; Belongs to the thioredoxin family.


ensembl_gene_id: Psed_3483
symbol: Psed_3483
gene_biotype: protein_coding
description:
  KEGG: fri:FraEuI1c_6448 chaperone DnaJ domain protein; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal.


ensembl_gene_id: Psed_3487
symbol: Psed_3487
gene_biotype: protein_coding
description:
  PFAM: Heat shock protein Hsp20; KEGG: sna:Snas_3573 heat shock protein HSP20; Belongs to the small heat shock protein (HSP20) family.


ensembl_gene_id: Psed_3488
symbol: Psed_3488
gene_biotype: protein_coding
description:
  PFAM: Sulphate transporter/antisigma-factor antagonist STAS; KEGG: gob:Gobs_2116 anti-sigma-factor antagonist.


ensembl_gene_id: Psed_3493
symbol: Psed_3493
gene_biotype: protein_coding
description:
  KEGG: bgl:bglu_1g00680 ParB-like partition protein; PFAM: ParB-like nuclease; SMART: ParB-like nuclease; Belongs to the ParB family.


ensembl_gene_id: Psed_3508
symbol: Psed_3508
gene_biotype: protein_coding
description:
  Intracellular protease, PfpI family; KEGG: sma:SAV_7231 intracellular protease/amidase; TIGRFAM: Peptidase C56, PfpI; PFAM: ThiJ/PfpI.


ensembl_gene_id: Psed_3513
symbol: Psed_3513
gene_biotype: protein_coding
description:
  SMART: Helix-turn-helix, AraC type, DNA binding domain; KEGG: rha:RHA1_ro08065 AraC family transcriptional regulator.


ensembl_gene_id: Psed_3518
symbol: Psed_3518
gene_biotype: protein_coding
description:
  Phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.


ensembl_gene_id: Psed_3519
symbol: rpoZ
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.


ensembl_gene_id: Psed_3522
symbol: Psed_3522
gene_biotype: protein_coding
description:
  KEGG: fre:Franean1_6493 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain.


ensembl_gene_id: Psed_3523
symbol: Psed_3523
gene_biotype: protein_coding
description:
  SMART: Orotidine 5'-phosphate decarboxylase domain; TIGRFAM: Orotidine 5'-phosphate decarboxylase, type 2; KEGG: ami:Amir_5240 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase domain.


ensembl_gene_id: Psed_3524
symbol: carB
gene_biotype: protein_coding
description:
  SMART: Methylglyoxal synthase-like domain; TIGRFAM: Carbamoyl-phosphate synthase, large subunit; KEGG: sen:SACE_2083 carbamoyl-phosphate synthase large subunit; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Carbamoyl-phosphate synthetase, large subunit, oligomerisation; Methylglyoxal synthase-like domain; Belongs to the CarB family.


ensembl_gene_id: Psed_3525
symbol: carA
gene_biotype: protein_coding
description:
  TIGRFAM: Carbamoyl-phosphate synthase, small subunit; KEGG: sen:SACE_2082 carbamoyl-phosphate synthase small subunit; PFAM: Carbamoyl-phosphate synthase, small subunit, N-terminal; Glutamine amidotransferase class-I, C-terminal; Belongs to the CarA family.


ensembl_gene_id: Psed_3526
symbol: pyrC
gene_biotype: protein_coding
description:
  Dihydroorotase, multifunctional complex type; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.


ensembl_gene_id: Psed_3527
symbol: pyrB
gene_biotype: protein_coding
description:
  PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; TIGRFAM: Aspartate carbamoyltransferase, eukaryotic; HAMAP: Aspartate carbamoyltransferase, eukaryotic; KEGG: sen:SACE_2079 aspartate carbamoyltransferase catalytic chain; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.


ensembl_gene_id: Psed_3528
symbol: pyrR
gene_biotype: protein_coding
description:
  Bifunctional protein pyrR; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant.


ensembl_gene_id: Psed_3529
symbol: Psed_3529
gene_biotype: protein_coding
description:
  Helix-turn-helix domain protein; KEGG: ami:Amir_5247 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3.


ensembl_gene_id: Psed_3530
symbol: Psed_3530
gene_biotype: protein_coding
description:
  PFAM: Major facilitator superfamily MFS-1; KEGG: sen:SACE_7047 major facilitator superfamily sugar transporter.


ensembl_gene_id: Psed_3532
symbol: nusB
gene_biotype: protein_coding
description:
  NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.


ensembl_gene_id: Psed_3533
symbol: efp
gene_biotype: protein_coding
description:
  Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.


ensembl_gene_id: Psed_3535
symbol: aroB
gene_biotype: protein_coding
description:
  3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).


ensembl_gene_id: Psed_3536
symbol: aroK
gene_biotype: protein_coding
description:
  Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.


ensembl_gene_id: Psed_3537
symbol: aroC
gene_biotype: protein_coding
description:
  Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.


ensembl_gene_id: Psed_3539
symbol: Psed_3539
gene_biotype: protein_coding
description:
  Putative F420-dependent enzyme; KEGG: sma:SAV_1780 hypothetical protein; TIGRFAM: F420-binding domain, putative; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain.


ensembl_gene_id: Psed_3541
symbol: mltG
gene_biotype: protein_coding
description:
  Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.


ensembl_gene_id: Psed_3542
symbol: Psed_3542
gene_biotype: protein_coding
description:
  Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.


ensembl_gene_id: Psed_3543
symbol: alaS
gene_biotype: protein_coding
description:
  alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.


ensembl_gene_id: Psed_3546
symbol: Psed_3546
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: svi:Svir_04710 RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Psed_3547
symbol: Psed_3547
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: fre:Franean1_1469 regulatory protein TetR.


ensembl_gene_id: Psed_3548
symbol: Psed_3548
gene_biotype: protein_coding
description:
  TIGRFAM: Ornithine aminotransferase; KEGG: gob:Gobs_2808 ornithine aminotransferase; PFAM: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Psed_3549
symbol: Psed_3549
gene_biotype: protein_coding
description:
  Transcriptional regulator, AsnC family; KEGG: sco:SCO1458 transcription regulator AsnC; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type.


ensembl_gene_id: Psed_3552
symbol: Psed_3552
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: nml:Namu_2592 TetR family transcriptional regulator.


ensembl_gene_id: Psed_3555
symbol: Psed_3555
gene_biotype: protein_coding
description:
  5-oxoprolinase (ATP-hydrolyzing); KEGG: rop:ROP_32800 hydantoinase A; PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal.


ensembl_gene_id: Psed_3556
symbol: Psed_3556
gene_biotype: protein_coding
description:
  5-oxoprolinase (ATP-hydrolyzing); KEGG: rer:RER_58720 hydantoinase B; PFAM: Hydantoinase B/oxoprolinase.


ensembl_gene_id: Psed_3561
symbol: Psed_3561
gene_biotype: protein_coding
description:
  PFAM: Aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: fri:FraEuI1c_2884 aromatic-ring-hydroxylating dioxygenase beta subunit.


ensembl_gene_id: Psed_3562
symbol: Psed_3562
gene_biotype: protein_coding
description:
  PFAM: Peptidase S1/S6, chymotrypsin/Hap; KEGG: tfu:Tfu_0484 streptogrisin C. Serine peptidase. MEROPS family S01A.


ensembl_gene_id: Psed_3563
symbol: Psed_3563
gene_biotype: protein_coding
description:
  AAA ATPase central domain protein; KEGG: svi:Svir_15240 recombination factor protein RarA; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_3564
symbol: Psed_3564
gene_biotype: protein_coding
description:
  Putative transcriptional regulator, GntR family; KEGG: rop:ROP_63240 aminotransferase; PFAM: Aminotransferase, class I/classII.


ensembl_gene_id: Psed_3565
symbol: Psed_3565
gene_biotype: protein_coding
description:
  KEGG: aac:Aaci_2663 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type.


ensembl_gene_id: Psed_3566
symbol: Psed_3566
gene_biotype: protein_coding
description:
  Aspartate transaminase; KEGG: bts:Btus_0692 aminotransferase class I and II; PFAM: Aminotransferase, class I/classII.


ensembl_gene_id: Psed_3568
symbol: Psed_3568
gene_biotype: protein_coding
description:
  Lipolytic protein G-D-S-L family; PFAM: Lipase, GDSL; KEGG: sen:SACE_3285 lipolytic enzyme, G-D-S-L.


ensembl_gene_id: Psed_3570
symbol: aspS
gene_biotype: protein_coding
description:
  aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.


ensembl_gene_id: Psed_3571
symbol: Psed_3571
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_2699 radical SAM domain-containing protein; PFAM: Radical SAM; SMART: Hedgehog/intein hint, N-terminal; Hedgehog/intein hint domain, C-terminal.


ensembl_gene_id: Psed_3572
symbol: Psed_3572
gene_biotype: protein_coding
description:
  TIGRFAM: Carbohydrate kinase, thermoresistant glucokinase; KEGG: kra:Krad_0597 carbohydrate kinase, thermoresistant glucokinase family; PFAM: Shikimate kinase.


ensembl_gene_id: Psed_3575
symbol: hisS
gene_biotype: protein_coding
description:
  PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Anticodon-binding; TIGRFAM: Histidyl-tRNA synthetase, class IIa, subgroup; HAMAP: Histidyl-tRNA synthetase, class IIa, subgroup; KEGG: nfa:nfa36640 histidyl-tRNA synthetase.


ensembl_gene_id: Psed_3576
symbol: Psed_3576
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_1700 beta-lactamase domain protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like.


ensembl_gene_id: Psed_3578
symbol: Psed_3578
gene_biotype: protein_coding
description:
  (p)ppGpp synthetase I, SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.


ensembl_gene_id: Psed_3579
symbol: apt
gene_biotype: protein_coding
description:
  Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.


ensembl_gene_id: Psed_3580
symbol: secF
gene_biotype: protein_coding
description:
  Protein-export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: Psed_3581
symbol: secD-2
gene_biotype: protein_coding
description:
  Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: Psed_3582
symbol: Psed_3582
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_1694 preprotein translocase, YajC subunit; TIGRFAM: Preprotein translocase YajC; PFAM: Preprotein translocase YajC.


ensembl_gene_id: Psed_3583
symbol: ruvB
gene_biotype: protein_coding
description:
  Holliday junction ATP-dependent DNA helicase ruvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.


ensembl_gene_id: Psed_3584
symbol: ruvA
gene_biotype: protein_coding
description:
  Holliday junction ATP-dependent DNA helicase ruvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.


ensembl_gene_id: Psed_3585
symbol: ruvC
gene_biotype: protein_coding
description:
  Crossover junction endodeoxyribonuclease ruvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.


ensembl_gene_id: Psed_3586
symbol: Psed_3586
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: kse:Ksed_20380 lactoylglutathione lyase-like lyase.


ensembl_gene_id: Psed_3588
symbol: polA
gene_biotype: protein_coding
description:
  DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.


ensembl_gene_id: Psed_3594
symbol: Psed_3594
gene_biotype: protein_coding
description:
  Tellurite resistance TerB; PFAM: Heat shock protein DnaJ-like protein DjlA; KEGG: rha:RHA1_ro01775 tellurium resistance protein.


ensembl_gene_id: Psed_3595
symbol: Psed_3595
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function DUF475; Bacterial stress protein; KEGG: ske:Sked_33950 hypothetical protein.


ensembl_gene_id: Psed_3597
symbol: Psed_3597
gene_biotype: protein_coding
description:
  PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: stp:Strop_1547 GCN5-related N-acetyltransferase.


ensembl_gene_id: Psed_3599
symbol: Psed_3599
gene_biotype: protein_coding
description:
  UPF0082 protein yeeN; TIGRFAM: Protein of unknown function DUF28; HAMAP: Protein of unknown function DUF28; KEGG: sma:SAV_6832 hypothetical protein; PFAM: Protein of unknown function DUF28.


ensembl_gene_id: Psed_3600
symbol: pdxT
gene_biotype: protein_coding
description:
  Glutamine amidotransferase subunit pdxT; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS.


ensembl_gene_id: Psed_3601
symbol: Psed_3601
gene_biotype: protein_coding
description:
  Malic protein NAD-binding protein; KEGG: ami:Amir_0465 malate dehydrogenase (oxaloacetate-decarboxylating); PFAM: Malic enzyme, NAD-binding; Malic enzyme, N-terminal; SMART: Malic enzyme, NAD-binding.


ensembl_gene_id: Psed_3602
symbol: Psed_3602
gene_biotype: protein_coding
description:
  TIGRFAM: Small GTP-binding protein; PFAM: Translation elongation factor EFG/EF2, domain IV; Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; KEGG: amd:AMED_5317 elongation factor EF-G; SMART: Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal.


ensembl_gene_id: Psed_3603
symbol: Psed_3603
gene_biotype: protein_coding
description:
  PFAM: Branched-chain amino acid transport, AzlD; KEGG: tcu:Tcur_0680 branched-chain amino acid transport.


ensembl_gene_id: Psed_3604
symbol: Psed_3604
gene_biotype: protein_coding
description:
  AzlC family protein; PFAM: Branched-chain amino acid transport, permease; KEGG: sna:Snas_2053 AzlC family protein.


ensembl_gene_id: Psed_3605
symbol: Psed_3605
gene_biotype: protein_coding
description:
  Helix-turn-helix domain protein; KEGG: sen:SACE_2013 DNA-binding protein; PFAM: Helix-turn-helix type 3; Cupin 2, conserved barrel; SMART: Helix-turn-helix type 3.


ensembl_gene_id: Psed_3606
symbol: Psed_3606
gene_biotype: protein_coding
description:
  PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: tcu:Tcur_4812 Rieske (2Fe-2S) domain-containing protein.


ensembl_gene_id: Psed_3607
symbol: pdxS
gene_biotype: protein_coding
description:
  Pyridoxal biosynthesis lyase pdxS; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family.


ensembl_gene_id: Psed_3609
symbol: Psed_3609
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_2094 phosphatidylinositol alpha-mannosyltransferase; PFAM: Glycosyl transferase, group 1.


ensembl_gene_id: Psed_3610
symbol: Psed_3610
gene_biotype: protein_coding
description:
  PFAM: Bacterial lipid A biosynthesis acyltransferase; KEGG: amd:AMED_5323 lipid A biosynthesis lauroyl acyltransferase.


ensembl_gene_id: Psed_3611
symbol: Psed_3611
gene_biotype: protein_coding
description:
  PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sen:SACE_2007 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, putative; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: Psed_3613
symbol: thrS
gene_biotype: protein_coding
description:
  TIGRFAM: Threonyl-tRNA synthetase, class IIa; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Threonyl/alanyl tRNA synthetase, SAD; Anticodon-binding; KEGG: svi:Svir_14910 threonyl-tRNA synthetase; SMART: Threonyl/alanyl tRNA synthetase, SAD; Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: Psed_3618
symbol: Psed_3618
gene_biotype: protein_coding
description:
  PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; KEGG: mva:Mvan_6036 glycosyl transferase family protein.


ensembl_gene_id: Psed_3622
symbol: Psed_3622
gene_biotype: protein_coding
description:
  KEGG: art:Arth_2739 MerR family transcriptional regulator; PFAM: TipAS antibiotic-recognition; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR.


ensembl_gene_id: Psed_3623
symbol: Psed_3623
gene_biotype: protein_coding
description:
  Putative PAS/PAC sensor protein; TIGRFAM: PAS; PFAM: Sporulation stage II, protein E C-terminal; PAS fold-4; PAS fold; PAS fold-3; GAF; KEGG: sro:Sros_3356 serine phosphatase RsbU regulator of sigma subunit-like protein; SMART: Protein phosphatase 2C-like; PAS; PAC motif.


ensembl_gene_id: Psed_3626
symbol: Psed_3626
gene_biotype: protein_coding
description:
  KEGG: gob:Gobs_0315 PPOX class F420-dependent enzyme; TIGRFAM: Probable F420-dependent enzyme, PPOX class, family Rv0121; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain.


ensembl_gene_id: Psed_3627
symbol: Psed_3627
gene_biotype: protein_coding
description:
  KEGG: cai:Caci_0619 beta-lactamase domain protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like.


ensembl_gene_id: Psed_3628
symbol: Psed_3628
gene_biotype: protein_coding
description:
  Pirin domain protein; PFAM: Pirin, N-terminal; Pirin, C-terminal; KEGG: mau:Micau_2195 pirin domain-containing protein; Belongs to the pirin family.


ensembl_gene_id: Psed_3630
symbol: Psed_3630
gene_biotype: protein_coding
description:
  SNF2-related protein; KEGG: amd:AMED_3525 putative helicase; PFAM: SNF2-related; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal.


ensembl_gene_id: Psed_3633
symbol: Psed_3633
gene_biotype: protein_coding
description:
  KEGG: svi:Svir_19090 cystathionine gamma-synthase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme.


ensembl_gene_id: Psed_3634
symbol: Psed_3634
gene_biotype: protein_coding
description:
  Ferredoxin--NAD(+) reductase; KEGG: cai:Caci_2641 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Psed_3635
symbol: folE
gene_biotype: protein_coding
description:
  PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; TIGRFAM: GTP cyclohydrolase I; HAMAP: GTP cyclohydrolase I; KEGG: nfa:nfa31470 putative GTP cyclohydrolase I.


ensembl_gene_id: Psed_3637
symbol: Psed_3637
gene_biotype: protein_coding
description:
  Peptidoglycan glycosyltransferase; KEGG: sen:SACE_0314 penicillin binding protein (class A); PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase.


ensembl_gene_id: Psed_3639
symbol: Psed_3639
gene_biotype: protein_coding
description:
  Short-chain dehydrogenase/reductase SDR; KEGG: sen:SACE_0700 short chain dehydrogenase/reductase family oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR.


ensembl_gene_id: Psed_3641
symbol: Psed_3641
gene_biotype: protein_coding
description:
  PFAM: Shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; KEGG: tbi:Tbis_2043 shikimate-5-dehydrogenase; Belongs to the shikimate dehydrogenase family.


ensembl_gene_id: Psed_3644
symbol: Psed_3644
gene_biotype: protein_coding
description:
  Regulatory protein MarR; KEGG: amd:AMED_3031 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR.


ensembl_gene_id: Psed_3645
symbol: Psed_3645
gene_biotype: protein_coding
description:
  Polyamine-transporting ATPase; PFAM: ABC transporter-like; KEGG: rop:ROP_48820 putative ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_3647
symbol: Psed_3647
gene_biotype: protein_coding
description:
  TIGRFAM: Phosphoglucomutase, alpha-D-glucose specific; KEGG: sco:SCO7443 phosphoglucomutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal.


ensembl_gene_id: Psed_3650
symbol: Psed_3650
gene_biotype: protein_coding
description:
  PFAM: Sulphate transporter/antisigma-factor antagonist STAS; KEGG: rha:RHA1_ro08339 hypothetical protein.


ensembl_gene_id: Psed_3655
symbol: Psed_3655
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: cai:Caci_1662 transcriptional regulator, TetR family.


ensembl_gene_id: Psed_3658
symbol: Psed_3658
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: nml:Namu_4893 RNA polymerase factor sigma-70; TIGRFAM: RNA polymerase sigma-G type, actinobacteria; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; Nuclear transport factor 2; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Psed_3660
symbol: Psed_3660
gene_biotype: protein_coding
description:
  Helix-turn-helix domain protein; SMART: Helix-turn-helix type 3; KEGG: sro:Sros_7488 hypothetical protein.


ensembl_gene_id: Psed_3664
symbol: Psed_3664
gene_biotype: protein_coding
description:
  TIGRFAM: Galactokinase; KEGG: svi:Svir_14320 galactokinase; PFAM: Galactokinase galactose-binding domain; GHMP kinase; GHMP kinase, C-terminal; Belongs to the GHMP kinase family. GalK subfamily.


ensembl_gene_id: Psed_3665
symbol: Psed_3665
gene_biotype: protein_coding
description:
  TIGRFAM: Galactose-1-phosphate uridyl transferase, class I; KEGG: mau:Micau_5380 galactose-1-phosphate uridylyltransferase; PFAM: Galactose-1-phosphate uridyl transferase, N-terminal; Galactose-1-phosphate uridyl transferase, C-terminal.


ensembl_gene_id: Psed_3666
symbol: Psed_3666
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_0618 transcriptional regulator, DeoR family; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal.


ensembl_gene_id: Psed_3667
symbol: Psed_3667
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_6118 SSS sodium solute transporter superfamily; TIGRFAM: Sodium/solute symporter, subgroup; PFAM: Sodium/solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: Psed_3670
symbol: Psed_3670
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_4589 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain.


ensembl_gene_id: Psed_3671
symbol: Psed_3671
gene_biotype: protein_coding
description:
  KEGG: tcu:Tcur_4638 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR.


ensembl_gene_id: Psed_3673
symbol: Psed_3673
gene_biotype: protein_coding
description:
  Xylulokinase; KEGG: sro:Sros_8238 carbohydrate kinase, FGGY; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal.


ensembl_gene_id: Psed_3674
symbol: Psed_3674
gene_biotype: protein_coding
description:
  L-fuculose-phosphate aldolase; KEGG: svi:Svir_32120 ribulose-5-phosphate 4-epimerase-like epimerase or aldolase; PFAM: Class II aldolase/adducin, N-terminal.


ensembl_gene_id: Psed_3676
symbol: Psed_3676
gene_biotype: protein_coding
description:
  Squalene synthase HpnC; KEGG: sco:SCO6759 phytoene synthase; TIGRFAM: Squalene synthase HpnC; PFAM: Squalene/phytoene synthase.


ensembl_gene_id: Psed_3677
symbol: Psed_3677
gene_biotype: protein_coding
description:
  TIGRFAM: Squalene/phytoene synthase HpnD; KEGG: fre:Franean1_5716 squalene/phytoene synthase; PFAM: Squalene/phytoene synthase.


ensembl_gene_id: Psed_3678
symbol: Psed_3678
gene_biotype: protein_coding
description:
  KEGG: scb:SCAB_12971 phytoene dehydrogenase; TIGRFAM: Squalene-associated FAD-dependent desaturase; PFAM: Amine oxidase.


ensembl_gene_id: Psed_3679
symbol: Psed_3679
gene_biotype: protein_coding
description:
  Dimethylallyltranstransferase; KEGG: sma:SAV_2997 polyprenyl diphosphate synthase; PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: Psed_3680
symbol: Psed_3680
gene_biotype: protein_coding
description:
  TIGRFAM: Hopene cyclase; Squalene cyclase; KEGG: ace:Acel_1697 squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase.


ensembl_gene_id: Psed_3682
symbol: Psed_3682
gene_biotype: protein_coding
description:
  KEGG: sgr:SGR_960 hypothetical protein; TIGRFAM: Hopanoid biosynthesis associated radical SAM protein HpnH; PFAM: Radical SAM.


ensembl_gene_id: Psed_3684
symbol: Psed_3684
gene_biotype: protein_coding
description:
  PFAM: Monogalactosyldiacylglycerol synthase; Glycosyl transferase, family 28, C-terminal; KEGG: sen:SACE_4322 hypothetical protein.


ensembl_gene_id: Psed_3685
symbol: Psed_3685
gene_biotype: protein_coding
description:
  Protein of unknown function UPF0089; PFAM: O-acyltransferase, WSD1, N-terminal; KEGG: sen:SACE_4322 hypothetical protein.


ensembl_gene_id: Psed_3687
symbol: Psed_3687
gene_biotype: protein_coding
description:
  Short-chain dehydrogenase/reductase SDR; KEGG: sen:SACE_4323 short chain dehydrogenase/reductase family oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Psed_3688
symbol: aroQ
gene_biotype: protein_coding
description:
  3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.


ensembl_gene_id: Psed_3689
symbol: Psed_3689
gene_biotype: protein_coding
description:
  PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: cak:Caul_3647 GCN5-like N-acetyltransferase.


ensembl_gene_id: Psed_3690
symbol: Psed_3690
gene_biotype: protein_coding
description:
  KEGG: req:REQ_03160 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR.


ensembl_gene_id: Psed_3692
symbol: Psed_3692
gene_biotype: protein_coding
description:
  SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: tcu:Tcur_4712 oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Psed_3693
symbol: Psed_3693
gene_biotype: protein_coding
description:
  SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: rer:RER_00660 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Psed_3694
symbol: Psed_3694
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rer:RER_00650 ABC transporter permease protein.


ensembl_gene_id: Psed_3695
symbol: Psed_3695
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_0116 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Psed_3699
symbol: Psed_3699
gene_biotype: protein_coding
description:
  PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; KEGG: svi:Svir_38400 4-carboxy-4-hydroxy-2-oxoadipate aldolase.


ensembl_gene_id: Psed_3700
symbol: Psed_3700
gene_biotype: protein_coding
description:
  LmbE family protein; PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; KEGG: svi:Svir_38410 uncharacterized LmbE-like protein.


ensembl_gene_id: Psed_3701
symbol: Psed_3701
gene_biotype: protein_coding
description:
  KEGG: ach:Achl_3363 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR.


ensembl_gene_id: Psed_3702
symbol: Psed_3702
gene_biotype: protein_coding
description:
  PFAM: Methionine synthase, vitamin-B12 independent; KEGG: rde:RD1_3941 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative.


ensembl_gene_id: Psed_3705
symbol: Psed_3705
gene_biotype: protein_coding
description:
  Acetolactate synthase; KEGG: azl:AZL_a11060 hypothetical protein; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain.


ensembl_gene_id: Psed_3707
symbol: Psed_3707
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase (acetyl-transferring); PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; KEGG: bha:BH0777 acetoin dehydrogenase (TPP-dependent) beta chain; SMART: Transketolase-like, pyrimidine-binding domain.


ensembl_gene_id: Psed_3708
symbol: Psed_3708
gene_biotype: protein_coding
description:
  KEGG: cwo:Cwoe_4083 pyruvate dehydrogenase (acetyl-transferring); PFAM: Dehydrogenase, E1 component.


ensembl_gene_id: Psed_3709
symbol: Psed_3709
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase (acetyl-transferring); PFAM: Transketolase, C-terminal; Transketolase-like, pyrimidine-binding domain; KEGG: dat:HRM2_47610 PdhB; SMART: Transketolase-like, pyrimidine-binding domain.


ensembl_gene_id: Psed_3710
symbol: Psed_3710
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase (acetyl-transferring); KEGG: bha:BH0776 acetoin dehydrogenase (TPP-dependent) alpha chain; PFAM: Dehydrogenase, E1 component.


ensembl_gene_id: Psed_3711
symbol: Psed_3711
gene_biotype: protein_coding
description:
  PFAM: Xylose isomerase, TIM barrel domain; KEGG: lch:Lcho_0839 xylose isomerase domain-containing protein.


ensembl_gene_id: Psed_3712
symbol: Psed_3712
gene_biotype: protein_coding
description:
  Dihydrolipoyllysine-residue acetyltransferase; KEGG: cwo:Cwoe_0765 catalytic domain of components of various dehydrogenase complexes; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding.


ensembl_gene_id: Psed_3713
symbol: Psed_3713
gene_biotype: protein_coding
description:
  KEGG: nml:Namu_0675 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain.


ensembl_gene_id: Psed_3714
symbol: Psed_3714
gene_biotype: protein_coding
description:
  L-iditol 2-dehydrogenase; KEGG: rxy:Rxyl_0351 alcohol dehydrogenase GroES-like protein; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal.


ensembl_gene_id: Psed_3715
symbol: Psed_3715
gene_biotype: protein_coding
description:
  Phosphoglycerate dehydrogenase; KEGG: pjd:Pjdr2_2937 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain.


ensembl_gene_id: Psed_3717
symbol: Psed_3717
gene_biotype: protein_coding
description:
  KEGG: cwo:Cwoe_5069 transcriptional regulator, IclR family; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal.


ensembl_gene_id: Psed_3718
symbol: Psed_3718
gene_biotype: protein_coding
description:
  KEGG: fre:Franean1_6831 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Psed_3723
symbol: Psed_3723
gene_biotype: protein_coding
description:
  Oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: sno:Snov_3530 oxidoreductase domain protein.


ensembl_gene_id: Psed_3724
symbol: Psed_3724
gene_biotype: protein_coding
description:
  KEGG: sti:Sthe_3439 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Psed_3725
symbol: Psed_3725
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: xau:Xaut_1562 extracellular ligand-binding receptor.


ensembl_gene_id: Psed_3726
symbol: Psed_3726
gene_biotype: protein_coding
description:
  PFAM: Xylose isomerase, TIM barrel domain; KEGG: sus:Acid_3282 xylose isomerase domain-containing protein.


ensembl_gene_id: Psed_3727
symbol: Psed_3727
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase (acetyl-transferring); PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; KEGG: rha:RHA1_ro08624 acetoin dehydrogenase beta subunit; SMART: Transketolase-like, pyrimidine-binding domain.


ensembl_gene_id: Psed_3728
symbol: Psed_3728
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase (acetyl-transferring); KEGG: rha:RHA1_ro08623 acetoin dehydrogenase alpha subunit; PFAM: Dehydrogenase, E1 component.


ensembl_gene_id: Psed_3729
symbol: Psed_3729
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) reductase; KEGG: bbr:BB2766 putative short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Psed_3731
symbol: Psed_3731
gene_biotype: protein_coding
description:
  Phosphonate-transporting ATPase; PFAM: ABC transporter-like; KEGG: sti:Sthe_3114 ABC transporter related protein; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_3732
symbol: Psed_3732
gene_biotype: protein_coding
description:
  Monosaccharide-transporting ATPase; PFAM: ABC transporter-like; KEGG: met:M446_5639 ABC transporter related; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_3733
symbol: Psed_3733
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: ABC transporter permease; KEGG: axy:AXYL_01367 inner-membrane translocator 18; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Psed_3734
symbol: Psed_3734
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: ABC transporter permease; KEGG: xau:Xaut_1619 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Psed_3735
symbol: Psed_3735
gene_biotype: protein_coding
description:
  KEGG: gob:Gobs_5039 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal.


ensembl_gene_id: Psed_3737
symbol: Psed_3737
gene_biotype: protein_coding
description:
  Propanoyl-CoA C-acyltransferase; KEGG: bxe:Bxe_A2763 putative SCP-x_thiolase/acetyl-CoA acetyltransferase, PaaJ-like.


ensembl_gene_id: Psed_3738
symbol: Psed_3738
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: bxe:Bxe_A2762 hypothetical protein.


ensembl_gene_id: Psed_3739
symbol: Psed_3739
gene_biotype: protein_coding
description:
  NADPH:quinone reductase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: mxa:MXAN_4266 zinc-binding dehydrogenase family oxidoreductase; SMART: Polyketide synthase, enoylreductase.


ensembl_gene_id: Psed_3740
symbol: Psed_3740
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_C0355 putative AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase.


ensembl_gene_id: Psed_3742
symbol: Psed_3742
gene_biotype: protein_coding
description:
  Alpha-methylacyl-CoA racemase; KEGG: ami:Amir_5665 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.


ensembl_gene_id: Psed_3743
symbol: Psed_3743
gene_biotype: protein_coding
description:
  KEGG: dac:Daci_2567 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding.


ensembl_gene_id: Psed_3746
symbol: Psed_3746
gene_biotype: protein_coding
description:
  KEGG: rha:RHA1_ro02613 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal.


ensembl_gene_id: Psed_3749
symbol: Psed_3749
gene_biotype: protein_coding
description:
  PFAM: Copper amine oxidase, C-terminal; Copper amine oxidase, N3-terminal; Copper amine oxidase, N2-terminal; KEGG: gob:Gobs_1923 primary-amine oxidase.


ensembl_gene_id: Psed_3752
symbol: Psed_3752
gene_biotype: protein_coding
description:
  KEGG: swi:Swit_0904 UbiD family decarboxylase; TIGRFAM: Carboxylyase-related; PFAM: Carboxylyase-related; Belongs to the UbiD family.


ensembl_gene_id: Psed_3754
symbol: Psed_3754
gene_biotype: protein_coding
description:
  (2Fe-2S)-binding domain-containing protein; PFAM: [2Fe-2S]-binding; Ferredoxin; KEGG: tro:trd_A0068 aldehyde dehydrogenase subunit III.


ensembl_gene_id: Psed_3755
symbol: Psed_3755
gene_biotype: protein_coding
description:
  KEGG: tro:trd_A0069 probable xanthine dehydrogenase subunit D (XDHase subunit D); PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead.


ensembl_gene_id: Psed_3756
symbol: Psed_3756
gene_biotype: protein_coding
description:
  PFAM: Molybdopterin dehydrogenase, FAD-binding; KEGG: tbi:Tbis_2230 molybdopterin dehydrogenase FAD-binding protein.


ensembl_gene_id: Psed_3757
symbol: Psed_3757
gene_biotype: protein_coding
description:
  PFAM: Carbon monoxide dehydrogenase subunit G; KEGG: rsq:Rsph17025_1141 carbon monoxide dehydrogenase subunit G.


ensembl_gene_id: Psed_3758
symbol: Psed_3758
gene_biotype: protein_coding
description:
  Transcriptional regulator, IclR family; KEGG: scb:SCAB_81001 repressor of aceBA operon; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal.


ensembl_gene_id: Psed_3760
symbol: Psed_3760
gene_biotype: protein_coding
description:
  PFAM: Major facilitator superfamily MFS-1; KEGG: vdi:Vdis_1658 major facilitator superfamily protein.


ensembl_gene_id: Psed_3761
symbol: Psed_3761
gene_biotype: protein_coding
description:
  KEGG: fal:FRAAL2367 putative glutamate synthase(ferredoxin); PFAM: Glutamate synthase, central-C; Belongs to the glutamate synthase family.


ensembl_gene_id: Psed_3762
symbol: Psed_3762
gene_biotype: protein_coding
description:
  TIGRFAM: Methylmalonate-semialdehyde dehydrogenase; KEGG: ace:Acel_1799 methylmalonate-semialdehyde dehydrogenase (acylating); PFAM: Aldehyde dehydrogenase domain.


ensembl_gene_id: Psed_3763
symbol: Psed_3763
gene_biotype: protein_coding
description:
  PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: amd:AMED_4864 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Psed_3764
symbol: Psed_3764
gene_biotype: protein_coding
description:
  PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: aau:AAur_0255 putative 3-hydroxybutyrate dehydrogenase.


ensembl_gene_id: Psed_3765
symbol: Psed_3765
gene_biotype: protein_coding
description:
  Type III effector Hrp-dependent outers domain protein; PFAM: Protein of unknown function, DUF1537; KEGG: cdi:DIP2080 hypothetical protein.


ensembl_gene_id: Psed_3766
symbol: Psed_3766
gene_biotype: protein_coding
description:
  GntR domain protein; KEGG: aau:AAur_0252 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR.


ensembl_gene_id: Psed_3769
symbol: Psed_3769
gene_biotype: protein_coding
description:
  Cation diffusion facilitator family transporter; KEGG: bpf:BpOF4_19035 hypothetical protein; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein.


ensembl_gene_id: Psed_3772
symbol: Psed_3772
gene_biotype: protein_coding
description:
  Regulatory protein ArsR; KEGG: rha:RHA1_ro05363 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR.


ensembl_gene_id: Psed_3774
symbol: Psed_3774
gene_biotype: protein_coding
description:
  Putative RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: amd:AMED_8897 RNA polymerase ECF-subfamily sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2.


ensembl_gene_id: Psed_3777
symbol: Psed_3777
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cwo:Cwoe_0347 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Psed_3779
symbol: Psed_3779
gene_biotype: protein_coding
description:
  Transcriptional regulator, PadR-like family; PFAM: Transcription regulator PadR N-terminal-like; KEGG: fre:Franean1_3145 PadR-like family transcriptional regulator.


ensembl_gene_id: Psed_3784
symbol: nadE
gene_biotype: protein_coding
description:
  NAD(+) synthase (glutamine-hydrolyzing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.


ensembl_gene_id: Psed_3786
symbol: Psed_3786
gene_biotype: protein_coding
description:
  CBS domain containing protein; KEGG: svi:Svir_17480 predicted signal-transduction protein containing cAMP-binding and CBS domains; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core.


ensembl_gene_id: Psed_3789
symbol: Psed_3789
gene_biotype: protein_coding
description:
  Metallophosphoesterase; PFAM: Metallo-dependent phosphatase; KEGG: mva:Mvan_5813 metallophosphoesterase.


ensembl_gene_id: Psed_3793
symbol: Psed_3793
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; KEGG: req:REQ_07080 hydrolase/LuxR domain protein; PFAM: Transcription regulator LuxR, C-terminal; Alpha/beta hydrolase fold-1; SMART: Transcription regulator LuxR, C-terminal.


ensembl_gene_id: Psed_3795
symbol: Psed_3795
gene_biotype: protein_coding
description:
  PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: mkm:Mkms_1622 deaminase-reductase domain-containing protein.


ensembl_gene_id: Psed_3796
symbol: Psed_3796
gene_biotype: protein_coding
description:
  Transcriptional regulator, HxlR family; PFAM: Helix-turn-helix, HxlR type; KEGG: nca:Noca_4912 helix-turn-helix, HxlR type.


ensembl_gene_id: Psed_3798
symbol: Psed_3798
gene_biotype: protein_coding
description:
  Homoserine O-acetyltransferase; KEGG: mjl:Mjls_0026 hypothetical protein; PFAM: Alpha/beta hydrolase fold-1; Belongs to the AB hydrolase superfamily. MetX family.


ensembl_gene_id: Psed_3800
symbol: Psed_3800
gene_biotype: protein_coding
description:
  TIGRFAM: Regulatory protein, FmdB, putative; PFAM: Regulatory protein, FmdB, putative; KEGG: krh:KRH_22990 putative regulatory protein; SMART: Regulatory protein, FmdB, putative.


ensembl_gene_id: Psed_3802
symbol: Psed_3802
gene_biotype: protein_coding
description:
  Regulatory protein MarR; KEGG: cai:Caci_6436 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR.


ensembl_gene_id: Psed_3803
symbol: der
gene_biotype: protein_coding
description:
  GTP-binding protein engA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.


ensembl_gene_id: Psed_3804
symbol: Psed_3804
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_5233 1-acylglycerol-3-phosphate O-acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase.


ensembl_gene_id: Psed_3805
symbol: cmk
gene_biotype: protein_coding
description:
  PFAM: Cytidylate kinase domain; TIGRFAM: Cytidylate kinase; HAMAP: Cytidylate kinase; KEGG: sen:SACE_5234 cytidylate kinase.


ensembl_gene_id: Psed_3806
symbol: Psed_3806
gene_biotype: protein_coding
description:
  KEGG: nda:Ndas_0977 chorismate mutase; TIGRFAM: Chorismate mutase, AroH class; PFAM: Chorismate mutase, AroH class.


ensembl_gene_id: Psed_3807
symbol: Psed_3807
gene_biotype: protein_coding
description:
  TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: svi:Svir_25330 ribosomal large subunit pseudouridine synthase B; SMART: RNA-binding S4; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: Psed_3808
symbol: Psed_3808
gene_biotype: protein_coding
description:
  Chromosome segregation and condensation protein, ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: Psed_3809
symbol: Psed_3809
gene_biotype: protein_coding
description:
  Chromosome segregation and condensation protein ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: Psed_3810
symbol: Psed_3810
gene_biotype: protein_coding
description:
  PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: sen:SACE_5241 chromosome partitioning protein (partial match).


ensembl_gene_id: Psed_3812
symbol: xerD
gene_biotype: protein_coding
description:
  Tyrosine recombinase xerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: Psed_3813
symbol: Psed_3813
gene_biotype: protein_coding
description:
  Putative F420-dependent oxidoreductase; KEGG: req:REQ_23690 fmn-dependent monooxygenase; TIGRFAM: F420-dependent oxidoreductase-predicted, Rv1855c; PFAM: Luciferase-like, subgroup.


ensembl_gene_id: Psed_3815
symbol: pyrG
gene_biotype: protein_coding
description:
  CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.


ensembl_gene_id: Psed_3818
symbol: Psed_3818
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_5439 DNA repair protein RecN; TIGRFAM: DNA recombination/repair protein RecN; PFAM: RecF/RecN/SMC.


ensembl_gene_id: Psed_3819
symbol: nadK
gene_biotype: protein_coding
description:
  Inorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.


ensembl_gene_id: Psed_3820
symbol: Psed_3820
gene_biotype: protein_coding
description:
  TIGRFAM: Haemolysin A; PFAM: RNA-binding S4; Ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: gbr:Gbro_2828 hemolysin A; SMART: RNA-binding S4.


ensembl_gene_id: Psed_3822
symbol: Psed_3822
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_5252 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase-like hydrolase.


ensembl_gene_id: Psed_3826
symbol: Psed_3826
gene_biotype: protein_coding
description:
  TIGRFAM: Methylpurine-DNA glycosylase (MPG); HAMAP: Methylpurine-DNA glycosylase (MPG); KEGG: amd:AMED_6033 DNA-3-methyladenine glycosylase; PFAM: Methylpurine-DNA glycosylase (MPG); Belongs to the DNA glycosylase MPG family.


ensembl_gene_id: Psed_3827
symbol: Psed_3827
gene_biotype: protein_coding
description:
  KEGG: bcm:Bcenmc03_1755 MerR family transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR.


ensembl_gene_id: Psed_3829
symbol: argH
gene_biotype: protein_coding
description:
  PFAM: Lyase 1, N-terminal; TIGRFAM: Argininosuccinate lyase; HAMAP: Argininosuccinate lyase; KEGG: rha:RHA1_ro00949 argininosuccinate lyase.


ensembl_gene_id: Psed_3830
symbol: argG
gene_biotype: protein_coding
description:
  PFAM: Argininosuccinate synthase; TIGRFAM: Argininosuccinate synthase; HAMAP: Argininosuccinate synthase; KEGG: nca:Noca_2474 argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 2 subfamily.


ensembl_gene_id: Psed_3832
symbol: Psed_3832
gene_biotype: protein_coding
description:
  Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.


ensembl_gene_id: Psed_3833
symbol: argD
gene_biotype: protein_coding
description:
  PFAM: Aminotransferase class-III; TIGRFAM: Acetylornithine/succinylornithine aminotransferase; HAMAP: Acetylornithine/succinyldiaminopimelate aminotransferase; KEGG: rop:ROP_06840 acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.


ensembl_gene_id: Psed_3834
symbol: argB
gene_biotype: protein_coding
description:
  Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.


ensembl_gene_id: Psed_3835
symbol: argJ
gene_biotype: protein_coding
description:
  Arginine biosynthesis bifunctional protein ArgJ; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.


ensembl_gene_id: Psed_3836
symbol: argC
gene_biotype: protein_coding
description:
  N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.


ensembl_gene_id: Psed_3838
symbol: pheT
gene_biotype: protein_coding
description:
  TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; KEGG: amd:AMED_6050 phenylalanyl-tRNA synthetase beta chain; HAMAP: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.


ensembl_gene_id: Psed_3839
symbol: pheS
gene_biotype: protein_coding
description:
  TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, alpha subunit; HAMAP: Phenylalanyl-tRNA synthetase alpha chain 1, bacterial; KEGG: ami:Amir_5465 phenylalanyl-tRNA synthetase, alpha subunit; PFAM: Phenylalanyl-tRNA synthetase; Phenylalanyl-tRNA synthetase, class II, N-terminal; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.


ensembl_gene_id: Psed_3840
symbol: Psed_3840
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_5470 tRNA/rRNA methyltransferase (SpoU); PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; SMART: RNA 2-O ribose methyltransferase, substrate binding; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: Psed_3841
symbol: rplT
gene_biotype: protein_coding
description:
  50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.


ensembl_gene_id: Psed_3842
symbol: rpmI
gene_biotype: protein_coding
description:
  TIGRFAM: Ribosomal protein L35, non-mitochondrial; HAMAP: Ribosomal protein L35, non-mitochondrial; KEGG: svi:Svir_25680 50S ribosomal protein L35; PFAM: Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.


ensembl_gene_id: Psed_3843
symbol: infC
gene_biotype: protein_coding
description:
  Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.


ensembl_gene_id: Psed_3845
symbol: uvrA
gene_biotype: protein_coding
description:
  UvrABC system protein A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.


ensembl_gene_id: Psed_3846
symbol: Psed_3846
gene_biotype: protein_coding
description:
  Beta-lactamase domain protein; KEGG: svi:Svir_25780 Zn-dependent hydrolase, glyoxylase; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like.


ensembl_gene_id: Psed_3848
symbol: Psed_3848
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_6371 LytR family transcriptional regulator; TIGRFAM: Cell envelope-related transcriptional attenuator; PFAM: Cell envelope-related transcriptional attenuator.


ensembl_gene_id: Psed_3852
symbol: Psed_3852
gene_biotype: protein_coding
description:
  PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; KEGG: ami:Amir_5503 peptidylprolyl isomerase FKBP-type.


ensembl_gene_id: Psed_3853
symbol: Psed_3853
gene_biotype: protein_coding
description:
  Phosphodiesterase, MJ0936 family; Manually curated; TIGRFAM: Phosphodiesterase MJ0936; KEGG: sen:SACE_5374 putative phosphoesterase; PFAM: Metallo-dependent phosphatase.


ensembl_gene_id: Psed_3854
symbol: Psed_3854
gene_biotype: protein_coding
description:
  PFAM: Antibiotic biosynthesis monooxygenase; KEGG: mil:ML5_3936 antibiotic biosynthesis monooxygenase.


ensembl_gene_id: Psed_3855
symbol: Psed_3855
gene_biotype: protein_coding
description:
  Sulfate-transporting ATPase; PFAM: ABC transporter-like; Dienelactone hydrolase; KEGG: amd:AMED_6109 ABC transport system ATP-binding protein fused with dipeptidyl-peptidase; SMART: ATPase, AAA+ type, core; Peptidase S15/CocE/NonD, C-terminal.


ensembl_gene_id: Psed_3858
symbol: Psed_3858
gene_biotype: protein_coding
description:
  Protein of unknown function DUF6 transmembrane; PFAM: Drug/metabolite transporter; KEGG: amd:AMED_8893 drug/metabolite transporter, DME family.


ensembl_gene_id: Psed_3859
symbol: Psed_3859
gene_biotype: protein_coding
description:
  PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sen:SACE_0264 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Psed_3860
symbol: Psed_3860
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ami:Amir_4764 transcriptional regulator, TetR family.


ensembl_gene_id: Psed_3866
symbol: uvrB
gene_biotype: protein_coding
description:
  UvrABC system protein B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and [...]


ensembl_gene_id: Psed_3869
symbol: Psed_3869
gene_biotype: protein_coding
description:
  KEGG: cai:Caci_8916 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2.


ensembl_gene_id: Psed_3870
symbol: coaE
gene_biotype: protein_coding
description:
  Dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.


ensembl_gene_id: Psed_3872
symbol: Psed_3872
gene_biotype: protein_coding
description:
  RNA binding S1 domain protein; KEGG: sen:SACE_5431 30S ribosomal protein S1; PFAM: Ribosomal protein S1, RNA-binding domain; SMART: RNA-binding domain, S1.


ensembl_gene_id: Psed_3874
symbol: Psed_3874
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_5533 thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily.


ensembl_gene_id: Psed_3875
symbol: Psed_3875
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: nml:Namu_3060 extracellular ligand-binding receptor.


ensembl_gene_id: Psed_3876
symbol: Psed_3876
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: ABC transporter permease; KEGG: mjl:Mjls_3034 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Psed_3877
symbol: Psed_3877
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: ABC transporter permease; KEGG: rsa:RSal33209_0250 branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Psed_3878
symbol: Psed_3878
gene_biotype: protein_coding
description:
  Monosaccharide-transporting ATPase; PFAM: ABC transporter-like; KEGG: nml:Namu_3057 ABC transporter-like protein; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_3880
symbol: Psed_3880
gene_biotype: protein_coding
description:
  Response regulator receiver and ANTAR domain protein; KEGG: amd:AMED_6148 two-component system response regulator; PFAM: Signal transduction response regulator, receiver domain; ANTAR; SMART: Signal transduction response regulator, receiver domain.


ensembl_gene_id: Psed_3884
symbol: Psed_3884
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; KEGG: amd:AMED_4379 two-component system response regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal.


ensembl_gene_id: Psed_3887
symbol: Psed_3887
gene_biotype: protein_coding
description:
  KEGG: tbi:Tbis_2596 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal.


ensembl_gene_id: Psed_3888
symbol: Psed_3888
gene_biotype: protein_coding
description:
  KEGG: kfl:Kfla_2125 hydroxypyruvate isomerase; PFAM: Xylose isomerase, TIM barrel domain; Belongs to the hyi family.


ensembl_gene_id: Psed_3889
symbol: Psed_3889
gene_biotype: protein_coding
description:
  TIGRFAM: 2-hydroxy-3-oxopropionate reductase; KEGG: amd:AMED_7266 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding.


ensembl_gene_id: Psed_3890
symbol: Psed_3890
gene_biotype: protein_coding
description:
  TIGRFAM: Glyoxylate carboligase; KEGG: psa:PST_3114 glyoxylate carboligase; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain; Belongs to the TPP enzyme family.


ensembl_gene_id: Psed_3891
symbol: Psed_3891
gene_biotype: protein_coding
description:
  TIGRFAM: Glycerate kinase; KEGG: tbi:Tbis_2591 glycerate kinase; PFAM: Glycerate kinase; Belongs to the glycerate kinase type-1 family.


ensembl_gene_id: Psed_3892
symbol: Psed_3892
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family with UTRA sensor domain protein; KEGG: saq:Sare_2893 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR.


ensembl_gene_id: Psed_3893
symbol: Psed_3893
gene_biotype: protein_coding
description:
  Anthranilate synthase., Aminodeoxychorismate lyase; KEGG: cwo:Cwoe_1171 chorismate binding-like protein; PFAM: Chorismate binding, C-terminal; Aminotransferase, class IV.


ensembl_gene_id: Psed_3897
symbol: Psed_3897
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: kfl:Kfla_6852 transcriptional regulator, TetR family.


ensembl_gene_id: Psed_3898
symbol: Psed_3898
gene_biotype: protein_coding
description:
  KEGG: nml:Namu_4881 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Psed_3902
symbol: Psed_3902
gene_biotype: protein_coding
description:
  Transcriptional regulator, PadR-like family; PFAM: Transcription regulator PadR N-terminal-like; KEGG: fre:Franean1_6014 PadR-like family transcriptional regulator.


ensembl_gene_id: Psed_3905
symbol: Psed_3905
gene_biotype: protein_coding
description:
  Fumarylacetoacetate (FAA) hydrolase; PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: nmg:Nmag_1492 fumarylacetoacetate (FAA) hydrolase.


ensembl_gene_id: Psed_3907
symbol: Psed_3907
gene_biotype: protein_coding
description:
  KEGG: sro:Sros_6284 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like.


ensembl_gene_id: Psed_3908
symbol: Psed_3908
gene_biotype: protein_coding
description:
  PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: ade:Adeh_2212 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Psed_3909
symbol: Psed_3909
gene_biotype: protein_coding
description:
  6-phosphogluconate dehydrogenase, decarboxylating; TIGRFAM: 6-phosphogluconate dehydrogenase-related protein; KEGG: fal:FRAAL1567 6-phosphogluconate dehydrogenase-like protein; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase, C-terminal.


ensembl_gene_id: Psed_3917
symbol: Psed_3917
gene_biotype: protein_coding
description:
  TIGRFAM: Nitrile hydratase, alpha subunit; KEGG: rcu:RCOM_1892310 Nitrile hydratase subunit alpha, putative; PFAM: Nitrile hydratase, alpha subunit/Thiocyanate hydrolase, gamma subunit.


ensembl_gene_id: Psed_3919
symbol: Psed_3919
gene_biotype: protein_coding
description:
  KEGG: rha:RHA1_ro09027 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR.


ensembl_gene_id: Psed_3921
symbol: Psed_3921
gene_biotype: protein_coding
description:
  Phthalate 4,5-dioxygenase; KEGG: bja:blr0938 putative dioxygenase; PFAM: Rieske [2Fe-2S] iron-sulphur domain.


ensembl_gene_id: Psed_3923
symbol: Psed_3923
gene_biotype: protein_coding
description:
  Phthalate 4,5-dioxygenase; KEGG: bxe:Bxe_A3529 Rieske (2Fe-2S) domain-containing protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain.


ensembl_gene_id: Psed_3924
symbol: Psed_3924
gene_biotype: protein_coding
description:
  L-threonine 3-dehydrogenase; KEGG: rha:RHA1_ro10365 dehydrogenase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like.


ensembl_gene_id: Psed_3925
symbol: Psed_3925
gene_biotype: protein_coding
description:
  Acetolactate synthase; KEGG: tro:trd_A0791 hypothetical protein; PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding.


ensembl_gene_id: Psed_3928
symbol: Psed_3928
gene_biotype: protein_coding
description:
  PFAM: Major facilitator superfamily MFS-1; KEGG: tcu:Tcur_4727 major facilitator superfamily protein.


ensembl_gene_id: Psed_3930
symbol: Psed_3930
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase (acetyl-transferring); PFAM: Transketolase, C-terminal; Transketolase-like, pyrimidine-binding domain; KEGG: amd:AMED_1985 pyruvate dehydrogenase E1 component; SMART: Transketolase-like, pyrimidine-binding domain.


ensembl_gene_id: Psed_3931
symbol: Psed_3931
gene_biotype: protein_coding
description:
  KEGG: rha:RHA1_ro00541 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type.


ensembl_gene_id: Psed_3933
symbol: Psed_3933
gene_biotype: protein_coding
description:
  NADPH:quinone reductase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: tcu:Tcur_4894 alcohol dehydrogenase zinc-binding domain-containing protein; SMART: Polyketide synthase, enoylreductase.


ensembl_gene_id: Psed_3934
symbol: Psed_3934
gene_biotype: protein_coding
description:
  PFAM: Major facilitator superfamily MFS-1; KEGG: msm:MSMEG_0534 permease, major facilitator family protein.


ensembl_gene_id: Psed_3935
symbol: Psed_3935
gene_biotype: protein_coding
description:
  KEGG: rop:ROP_42840 putative GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR.


ensembl_gene_id: Psed_3941
symbol: Psed_3941
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: gob:Gobs_0487 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Psed_3943
symbol: sbcD
gene_biotype: protein_coding
description:
  Nuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.


ensembl_gene_id: Psed_3946
symbol: Psed_3946
gene_biotype: protein_coding
description:
  KEGG: rer:pREL1_0202 hypothetical protein; manually curated; PFAM: Integrase, N-terminal SAM-like, phage; Belongs to the 'phage' integrase family.


ensembl_gene_id: Psed_3948
symbol: Psed_3948
gene_biotype: protein_coding
description:
  Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: msp:Mspyr1_54040 site-specific recombinase XerD.


ensembl_gene_id: Psed_3953
symbol: miaB
gene_biotype: protein_coding
description:
  (Dimethylallyl)adenosine tRNA methylthiotransferase miaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.


ensembl_gene_id: Psed_3954
symbol: Psed_3954
gene_biotype: protein_coding
description:
  TIGRFAM: TRAP transporter solute receptor, TAXI family; Twin-arginine translocation pathway, signal sequence; KEGG: ami:Amir_1445 TRAP transporter solute receptor, TAXI family.


ensembl_gene_id: Psed_3955
symbol: Psed_3955
gene_biotype: protein_coding
description:
  Putative RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: amd:AMED_5688 RNA polymerase ECF-subfamily sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; Tetratricopeptide TPR2.


ensembl_gene_id: Psed_3957
symbol: Psed_3957
gene_biotype: protein_coding
description:
  TIGRFAM: Conserved hypothetical protein CHP03086; Conserved hypothetical protein CHP03083, actinobacterial-type; KEGG: sna:Snas_0200 hypothetical protein.


ensembl_gene_id: Psed_3958
symbol: Psed_3958
gene_biotype: protein_coding
description:
  Histidine kinase; KEGG: amd:AMED_2365 two-component system histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain.


ensembl_gene_id: Psed_3959
symbol: Psed_3959
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_1447 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal.


ensembl_gene_id: Psed_3960
symbol: Psed_3960
gene_biotype: protein_coding
description:
  PFAM: ABC transporter-like; KEGG: amd:AMED_2363 ATPase component of ABC-type polar amino acid transport system; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_3961
symbol: Psed_3961
gene_biotype: protein_coding
description:
  ABC-type transporter, periplasmic subunit family 3; KEGG: amd:AMED_2362 ABC transport system substrate-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: Psed_3962
symbol: Psed_3962
gene_biotype: protein_coding
description:
  KEGG: svi:Svir_27720 amino acid ABC transporter membrane protein; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Psed_3963
symbol: Psed_3963
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_1451 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Psed_3966
symbol: glnE
gene_biotype: protein_coding
description:
  Glutamate-ammonia-ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transd [...]


ensembl_gene_id: Psed_3967
symbol: Psed_3967
gene_biotype: protein_coding
description:
  PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: fra:Francci3_1854 GCN5-related N-acetyltransferase.


ensembl_gene_id: Psed_3968
symbol: Psed_3968
gene_biotype: protein_coding
description:
  TIGRFAM: Glutamine synthetase type I; KEGG: sen:SACE_1613 glutamine synthetase; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp.


ensembl_gene_id: Psed_3969
symbol: Psed_3969
gene_biotype: protein_coding
description:
  TAP domain protein; PFAM: Peptidase S33, tripeptidyl-peptidase C-terminal; KEGG: amd:AMED_1217 exported protease.


ensembl_gene_id: Psed_3970
symbol: panB
gene_biotype: protein_coding
description:
  3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.


ensembl_gene_id: Psed_3973
symbol: Psed_3973
gene_biotype: protein_coding
description:
  Ribonuclease II; KEGG: sen:SACE_1600 ribonuclease R; PFAM: Ribonuclease II/R; SMART: Ribonuclease II/R.


ensembl_gene_id: Psed_3976
symbol: Psed_3976
gene_biotype: protein_coding
description:
  TIGRFAM: Conserved hypothetical protein CHP03083, actinobacterial-type; KEGG: mau:Micau_4347 hypothetical protein.


ensembl_gene_id: Psed_3977
symbol: Psed_3977
gene_biotype: protein_coding
description:
  Ureidoglycolate lyase; KEGG: svi:Svir_20690 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase; PFAM: Fumarylacetoacetase, C-terminal-like.


ensembl_gene_id: Psed_3978
symbol: Psed_3978
gene_biotype: protein_coding
description:
  Carbon-monoxide dehydrogenase (acceptor); KEGG: sen:SACE_5140 carbon monoxide dehydrogenase large chain; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead.


ensembl_gene_id: Psed_3979
symbol: Psed_3979
gene_biotype: protein_coding
description:
  Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.


ensembl_gene_id: Psed_3981
symbol: Psed_3981
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_1780 acetyl-CoA synthetase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; CoA-binding; ATP-grasp fold, succinyl-CoA synthetase-type; SMART: CoA-binding.


ensembl_gene_id: Psed_3983
symbol: Psed_3983
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_1465 iron (metal) dependent repressor, DtxR family; PFAM: Iron dependent repressor; Iron dependent repressor, N-terminal; Ferrous iron transporter, FeoA subunit; SMART: Iron dependent repressor, diptheria toxin type.


ensembl_gene_id: Psed_3984
symbol: Psed_3984
gene_biotype: protein_coding
description:
  TIGRFAM: UDP-glucose 4-epimerase; KEGG: sen:SACE_1774 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase.


ensembl_gene_id: Psed_3987
symbol: Psed_3987
gene_biotype: protein_coding
description:
  PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: rop:ROP_13260 indolepyruvate ferredoxin oxidoreductase.


ensembl_gene_id: Psed_3990
symbol: Psed_3990
gene_biotype: protein_coding
description:
  Beta-lactamase domain protein; PFAM: Beta-lactamase-like; KEGG: req:REQ_10450 metallo-beta-lactamase superfamily protein.


ensembl_gene_id: Psed_3992
symbol: Psed_3992
gene_biotype: protein_coding
description:
  PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: nfa:nfa43330 putative short chain dehydrogenase; SMART: Polyketide synthase/Fatty acid synthase, KR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Psed_3994
symbol: Psed_3994
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_5685 aromatic-L-amino-acid decarboxylase; PFAM: Pyridoxal phosphate-dependent decarboxylase.


ensembl_gene_id: Psed_3995
symbol: Psed_3995
gene_biotype: protein_coding
description:
  ABC-type transporter, periplasmic subunit; PFAM: Periplasmic binding protein; KEGG: req:REQ_03550 substrate binding lipoprotein.


ensembl_gene_id: Psed_3996
symbol: Psed_3996
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_2691 methionyl-tRNA formyltransferase; PFAM: Formyl transferase, N-terminal; Formyl transferase, C-terminal.


ensembl_gene_id: Psed_3997
symbol: Psed_3997
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sen:SACE_3446 TetR family transcriptional regulator.


ensembl_gene_id: Psed_3998
symbol: Psed_3998
gene_biotype: protein_coding
description:
  KEGG: tbi:Tbis_0526 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain.


ensembl_gene_id: Psed_3999
symbol: Psed_3999
gene_biotype: protein_coding
description:
  PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: rer:RER_56230 3-hydroxyacyl-CoA dehydrogenase; SMART: Polyketide synthase/Fatty acid synthase, KR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Psed_4000
symbol: Psed_4000
gene_biotype: protein_coding
description:
  TIGRFAM: Thiolase; KEGG: amd:AMED_3855 acetyl-CoA acyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Psed_4001
symbol: Psed_4001
gene_biotype: protein_coding
description:
  KEGG: ace:Acel_0606 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR.


ensembl_gene_id: Psed_4002
symbol: Psed_4002
gene_biotype: protein_coding
description:
  PFAM: Major facilitator superfamily MFS-1; Collagen-binding surface protein Cna-like, B-type domain; KEGG: amd:AMED_2033 MFS transporter, multidrug efflux transporter.


ensembl_gene_id: Psed_4004
symbol: Psed_4004
gene_biotype: protein_coding
description:
  PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; KEGG: mil:ML5_5681 acyl-CoA dehydrogenase domain-containing protein.


ensembl_gene_id: Psed_4005
symbol: Psed_4005
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_3154 biotin carboxylase; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; Carboxyl transferase; SMART: Biotin carboxylase, C-terminal.


ensembl_gene_id: Psed_4006
symbol: Psed_4006
gene_biotype: protein_coding
description:
  KEGG: mva:Mvan_0393 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal.


ensembl_gene_id: Psed_4007
symbol: Psed_4007
gene_biotype: protein_coding
description:
  PFAM: Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: mkm:Mkms_5277 acyl-CoA dehydrogenase domain-containing protein.


ensembl_gene_id: Psed_4011
symbol: Psed_4011
gene_biotype: protein_coding
description:
  Regulatory protein MarR; KEGG: ace:Acel_0044 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR.


ensembl_gene_id: Psed_4014
symbol: recC
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease V, gamma subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and r [...]


ensembl_gene_id: Psed_4015
symbol: recB
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease V, beta subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and re [...]


ensembl_gene_id: Psed_4016
symbol: recD
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease V, alpha subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and r [...]


ensembl_gene_id: Psed_4017
symbol: Psed_4017
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Signal transduction response regulator, receiver domain; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; KEGG: fal:FRAAL1961 putative thioredoxin reductase; SMART: Signal transduction response regulator, receiver domain.


ensembl_gene_id: Psed_4018
symbol: Psed_4018
gene_biotype: protein_coding
description:
  Histidine kinase; KEGG: rha:RHA1_ro04003 sensor kinase, two-component system; PFAM: ATPase-like, ATP-binding domain; Cyclic nucleotide-binding domain; SMART: ATPase-like, ATP-binding domain.


ensembl_gene_id: Psed_4022
symbol: Psed_4022
gene_biotype: protein_coding
description:
  KEGG: fri:FraEuI1c_0839 drug resistance transporter, Bcr/CflA subfamily; TIGRFAM: Drug resistance transporter Bcr/CflA subfamily; PFAM: Major facilitator superfamily MFS-1.


ensembl_gene_id: Psed_4023
symbol: Psed_4023
gene_biotype: protein_coding
description:
  Transcriptional regulator, SARP family; PFAM: Bacterial transcriptional activator domain; Signal transduction response regulator, C-terminal; KEGG: amd:AMED_2697 SARP family transcriptional regulator fused with ATPase domain.


ensembl_gene_id: Psed_4025
symbol: Psed_4025
gene_biotype: protein_coding
description:
  PFAM: Branched-chain amino acid transport, AzlD; KEGG: rsk:RSKD131_2097 branched-chain amino acid transport.


ensembl_gene_id: Psed_4026
symbol: Psed_4026
gene_biotype: protein_coding
description:
  AzlC family protein; PFAM: Branched-chain amino acid transport, permease; KEGG: hla:Hlac_1381 AzlC family protein.


ensembl_gene_id: Psed_4027
symbol: Psed_4027
gene_biotype: protein_coding
description:
  KEGG: nca:Noca_1870 regulatory protein, MarR; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR.


ensembl_gene_id: Psed_4029
symbol: Psed_4029
gene_biotype: protein_coding
description:
  GntR domain protein; KEGG: ske:Sked_05160 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR.


ensembl_gene_id: Psed_4030
symbol: Psed_4030
gene_biotype: protein_coding
description:
  Protein of unknown function DUF224 cysteine-rich region domain protein; PFAM: Cysteine-rich domain; KEGG: mjl:Mjls_4766 hypothetical protein.


ensembl_gene_id: Psed_4031
symbol: Psed_4031
gene_biotype: protein_coding
description:
  Iron-sulfur cluster binding protein; KEGG: fal:FRAAL3348 putative Fe4-S4 ferredoxin; TIGRFAM: Iron-sulphur cluster binding protein; PFAM: Domain of unknown function DUF162.


ensembl_gene_id: Psed_4039
symbol: Psed_4039
gene_biotype: protein_coding
description:
  Cysteine synthase; KEGG: aau:AAur_pTC20181 pyridoxal-phosphate dependent enzyme; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit.


ensembl_gene_id: Psed_4041
symbol: Psed_4041
gene_biotype: protein_coding
description:
  Putative F420-dependent oxidoreductase; KEGG: rha:RHA1_ro00619 alkanesulfonate monooxygenase; TIGRFAM: F420-dependent oxidoreductase-predicted, Rv1855c; Luciferase-like, F420-dependent oxidoreductase, Rv2161c, predicted; PFAM: Luciferase-like, subgroup.


ensembl_gene_id: Psed_4043
symbol: Psed_4043
gene_biotype: protein_coding
description:
  Threo-3-hydroxyaspartate ammonia-lyase; KEGG: bmj:BMULJ_04328 serine/threonine dehydratase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit.


ensembl_gene_id: Psed_4045
symbol: Psed_4045
gene_biotype: protein_coding
description:
  Cobalamin B12-binding domain protein; PFAM: Cobalamin (vitamin B12)-binding; KEGG: ami:Amir_0967 cobalamin B12-binding domain protein.


ensembl_gene_id: Psed_4046
symbol: Psed_4046
gene_biotype: protein_coding
description:
  KEGG: mil:ML5_5570 protein serine/threonine phosphatase; PFAM: Sporulation stage II, protein E C-terminal; SMART: Protein phosphatase 2C-like.


ensembl_gene_id: Psed_4048
symbol: Psed_4048
gene_biotype: protein_coding
description:
  PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: amd:AMED_3432 putative RNA pseudouridylate synthase.


ensembl_gene_id: Psed_4049
symbol: Psed_4049
gene_biotype: protein_coding
description:
  PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: smd:Smed_5816 NADP oxidoreductase coenzyme F420-dependent.


ensembl_gene_id: Psed_4050
symbol: Psed_4050
gene_biotype: protein_coding
description:
  PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: fal:FRAAL3649 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Psed_4056
symbol: Psed_4056
gene_biotype: protein_coding
description:
  Sua5/YciO/YrdC/YwlC family protein; KEGG: sro:Sros_3610 hypothetical protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: Sua5/YciO/YrdC, N-terminal; Belongs to the SUA5 family.


ensembl_gene_id: Psed_4058
symbol: Psed_4058
gene_biotype: protein_coding
description:
  Regulatory protein DeoR; SMART: HTH transcriptional regulator, DeoR N-terminal; KEGG: sen:SACE_7336 DeoR family transcriptional regulator.


ensembl_gene_id: Psed_4059
symbol: Psed_4059
gene_biotype: protein_coding
description:
  UPF0225 protein ychJ; KEGG: amd:AMED_6092 hypothetical protein; manually curated; HAMAP: Uncharacterised protein family UPF0225; Belongs to the UPF0225 family.


ensembl_gene_id: Psed_4060
symbol: Psed_4060
gene_biotype: protein_coding
description:
  Xenobiotic-transporting ATPase; PFAM: ABC transporter-like; KEGG: cai:Caci_5807 ABC transporter related; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_4061
symbol: Psed_4061
gene_biotype: protein_coding
description:
  Xenobiotic-transporting ATPase; PFAM: ABC transporter-like; KEGG: cai:Caci_5809 ABC transporter related; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_4062
symbol: Psed_4062
gene_biotype: protein_coding
description:
  PFAM: Major facilitator superfamily MFS-1; KEGG: gbr:Gbro_0902 major facilitator superfamily protein.


ensembl_gene_id: Psed_4066
symbol: Psed_4066
gene_biotype: protein_coding
description:
  KEGG: art:Arth_0977 type III restriction enzyme, res subunit; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; Helicase, C-terminal; SMART: Helicase, C-terminal; DEAD-like helicase, N-terminal.


ensembl_gene_id: Psed_4069
symbol: Psed_4069
gene_biotype: protein_coding
description:
  Beta-lactamase domain protein; KEGG: bja:bll0271 hypothetical protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like.


ensembl_gene_id: Psed_4071
symbol: Psed_4071
gene_biotype: protein_coding
description:
  KEGG: sgr:SGR_6537 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP03083, actinobacterial-type; PFAM: Domain of unknown function DUF1503.


ensembl_gene_id: Psed_4079
symbol: Psed_4079
gene_biotype: protein_coding
description:
  Aryl-alcohol dehydrogenase (NADP(+)); KEGG: fal:FRAAL3972 putative aldo/keto oxidoreductase, NAD(P)-dependent, related to aryl-alcohol dehydrogenases; PFAM: NADP-dependent oxidoreductase domain.


ensembl_gene_id: Psed_4081
symbol: Psed_4081
gene_biotype: protein_coding
description:
  Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold-3; KEGG: ami:Amir_6871 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; PAC motif.


ensembl_gene_id: Psed_4085
symbol: Psed_4085
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nda:Ndas_5080 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Psed_4086
symbol: Psed_4086
gene_biotype: protein_coding
description:
  KEGG: fre:Franean1_5228 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Psed_4088
symbol: Psed_4088
gene_biotype: protein_coding
description:
  SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: kfl:Kfla_3790 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Psed_4089
symbol: Psed_4089
gene_biotype: protein_coding
description:
  SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: kfl:Kfla_3791 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Psed_4090
symbol: Psed_4090
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: tbi:Tbis_1849 binding-protein-dependent transporter inner membrane component.


ensembl_gene_id: Psed_4091
symbol: Psed_4091
gene_biotype: protein_coding
description:
  ABC-type transporter, periplasmic subunit; PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: sro:Sros_5913 ABC-type dipeptide transport system periplasmic component-like protein.


ensembl_gene_id: Psed_4092
symbol: Psed_4092
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: sro:Sros_5914 ABC transporter, permease protein.


ensembl_gene_id: Psed_4096
symbol: Psed_4096
gene_biotype: protein_coding
description:
  KEGG: rop:ROP_46170 putative oxidoreductase; TIGRFAM: Luciferase-like, F420-dependent oxidoreductase, Rv2161c, predicted; PFAM: Luciferase-like, subgroup.


ensembl_gene_id: Psed_4097
symbol: Psed_4097
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: rop:ROP_23780 putative TetR family transcriptional regulator.


ensembl_gene_id: Psed_4098
symbol: menB
gene_biotype: protein_coding
description:
  Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily.


ensembl_gene_id: Psed_4099
symbol: Psed_4099
gene_biotype: protein_coding
description:
  KEGG: nca:Noca_4298 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain.


ensembl_gene_id: Psed_4101
symbol: Psed_4101
gene_biotype: protein_coding
description:
  PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: efa:EF0426 gluconate 5-dehydrogenase; SMART: Polyketide synthase/Fatty acid synthase, KR.


ensembl_gene_id: Psed_4103
symbol: Psed_4103
gene_biotype: protein_coding
description:
  4-coumarate--CoA ligase; KEGG: rha:RHA1_ro02518 acyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase.


ensembl_gene_id: Psed_4104
symbol: Psed_4104
gene_biotype: protein_coding
description:
  NADPH dehydrogenase; KEGG: nml:Namu_1715 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal.


ensembl_gene_id: Psed_4106
symbol: Psed_4106
gene_biotype: protein_coding
description:
  Catalase; KEGG: sgr:SGR_1958 putative catalase; PFAM: Catalase-related subgroup; Catalase-related immune responsive; Belongs to the catalase family.


ensembl_gene_id: Psed_4108
symbol: Psed_4108
gene_biotype: protein_coding
description:
  KEGG: msm:MSMEG_3335 transcriptional regulator, IclR family protein, putative; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal.


ensembl_gene_id: Psed_4109
symbol: Psed_4109
gene_biotype: protein_coding
description:
  HpcH/HpaI aldolase; PFAM: Aldehyde-lyase domain; KEGG: msm:MSMEG_6298 malyl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.


ensembl_gene_id: Psed_4112
symbol: Psed_4112
gene_biotype: protein_coding
description:
  KEGG: sti:Sthe_1794 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal.


ensembl_gene_id: Psed_4114
symbol: Psed_4114
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rha:RHA1_ro05939 hypothetical protein.


ensembl_gene_id: Psed_4116
symbol: Psed_4116
gene_biotype: protein_coding
description:
  KEGG: nda:Ndas_1369 ATPase AAA-2 domain protein; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; Belongs to the ClpA/ClpB family.


ensembl_gene_id: Psed_4117
symbol: Psed_4117
gene_biotype: protein_coding
description:
  KEGG: fri:FraEuI1c_4500 putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2.


ensembl_gene_id: Psed_4120
symbol: Psed_4120
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function DUF125, transmembrane; KEGG: rop:ROP_21520 hypothetical membrane protein.


ensembl_gene_id: Psed_4122
symbol: Psed_4122
gene_biotype: protein_coding
description:
  L-lactate transport; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.


ensembl_gene_id: Psed_4124
symbol: Psed_4124
gene_biotype: protein_coding
description:
  PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; GTP cyclohydrolase II, RibA; KEGG: avn:Avin_43690 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; In the N-terminal section; belongs to the DHBP synthase family.


ensembl_gene_id: Psed_4126
symbol: Psed_4126
gene_biotype: protein_coding
description:
  L-iditol 2-dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; KEGG: rxy:Rxyl_0351 alcohol dehydrogenase GroES-like protein; SMART: Polyketide synthase, enoylreductase.


ensembl_gene_id: Psed_4127
symbol: Psed_4127
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) reductase; KEGG: bbe:BBR47_10970 glucose 1-dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Psed_4130
symbol: Psed_4130
gene_biotype: protein_coding
description:
  KEGG: cak:Caul_1939 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Psed_4132
symbol: Psed_4132
gene_biotype: protein_coding
description:
  Transcriptional regulator, CdaR; KEGG: gob:Gobs_4842 putative phytochrome sensor protein; PFAM: GAF; SMART: GAF.


ensembl_gene_id: Psed_4135
symbol: Psed_4135
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: fal:FRAAL4715 TetR family transcriptional regulator.


ensembl_gene_id: Psed_4137
symbol: Psed_4137
gene_biotype: protein_coding
description:
  L-threonine 3-dehydrogenase; KEGG: rer:RER_08310 zinc-containing alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal.


ensembl_gene_id: Psed_4138
symbol: Psed_4138
gene_biotype: protein_coding
description:
  Formyl-CoA transferase; KEGG: aac:Aaci_1851 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.


ensembl_gene_id: Psed_4140
symbol: Psed_4140
gene_biotype: protein_coding
description:
  Transcriptional regulator, winged helix family; KEGG: sro:Sros_1038 ATPase-like protein; PFAM: Bacterial transcriptional activator domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, C-terminal.


ensembl_gene_id: Psed_4144
symbol: Psed_4144
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_3228 osmosensitive K channel His kinase sensor; PFAM: Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal; UspA; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain.


ensembl_gene_id: Psed_4145
symbol: kdpC
gene_biotype: protein_coding
description:
  Potassium-transporting ATPase C chain; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP-binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB/KdpC/ATP ternary complex.


ensembl_gene_id: Psed_4146
symbol: kdpB
gene_biotype: protein_coding
description:
  Potassium-transporting ATPase B chain; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system. Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IA subfamily.


ensembl_gene_id: Psed_4147
symbol: kdpA
gene_biotype: protein_coding
description:
  Potassium-transporting ATPase A chain; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane.


ensembl_gene_id: Psed_4148
symbol: Psed_4148
gene_biotype: protein_coding
description:
  TIGRFAM: ATPase, P-type, K+-transporting, F subunit; PFAM: ATPase, P-type, K+-transporting, F subunit.


ensembl_gene_id: Psed_4150
symbol: Psed_4150
gene_biotype: protein_coding
description:
  KEGG: bra:BRADO2458 putative 3-isopropylmalate dehydrogenase (LeuB); PFAM: Isocitrate/isopropylmalate dehydrogenase.


ensembl_gene_id: Psed_4151
symbol: Psed_4151
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; KEGG: gbr:Gbro_2862 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal.


ensembl_gene_id: Psed_4153
symbol: Psed_4153
gene_biotype: protein_coding
description:
  Formyl-CoA transferase; KEGG: sgr:SGR_5476 putative acyl-CoA transferase; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.


ensembl_gene_id: Psed_4156
symbol: Psed_4156
gene_biotype: protein_coding
description:
  NADPH:quinone reductase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: afw:Anae109_2774 alcohol dehydrogenase; SMART: Polyketide synthase, enoylreductase.


ensembl_gene_id: Psed_4165
symbol: Psed_4165
gene_biotype: protein_coding
description:
  KEGG: bph:Bphy_6346 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal.


ensembl_gene_id: Psed_4166
symbol: Psed_4166
gene_biotype: protein_coding
description:
  Chitin deacetylase; KEGG: bbr:BB0695 putative polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; Cupin 2, conserved barrel.


ensembl_gene_id: Psed_4167
symbol: Psed_4167
gene_biotype: protein_coding
description:
  PFAM: Alpha/beta hydrolase fold-1; KEGG: cti:RALTA_A2298 putative hydrolase; putative 3-oxoadipate enol-lactonase.


ensembl_gene_id: Psed_4168
symbol: Psed_4168
gene_biotype: protein_coding
description:
  KEGG: pth:PTH_1335 citrate lyase beta subunit; PFAM: Aldehyde-lyase domain; Belongs to the HpcH/HpaI aldolase family.


ensembl_gene_id: Psed_4169
symbol: ilvD-3
gene_biotype: protein_coding
description:
  HAMAP: Dihydroxy-acid dehydratase; KEGG: rxy:Rxyl_1326 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; Belongs to the IlvD/Edd family.


ensembl_gene_id: Psed_4174
symbol: Psed_4174
gene_biotype: protein_coding
description:
  Formyl-CoA transferase; KEGG: rxy:Rxyl_0365 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.


ensembl_gene_id: Psed_4175
symbol: Psed_4175
gene_biotype: protein_coding
description:
  Chitin deacetylase; KEGG: bbr:BB0695 putative polysaccharide deacetylase; PFAM: Polysaccharide deacetylase.


ensembl_gene_id: Psed_4176
symbol: Psed_4176
gene_biotype: protein_coding
description:
  KEGG: msm:MSMEG_6300 transcriptional regulator, GntR family protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR.


ensembl_gene_id: Psed_4177
symbol: Psed_4177
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_5017 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal.


ensembl_gene_id: Psed_4178
symbol: Psed_4178
gene_biotype: protein_coding
description:
  Acetaldehyde dehydrogenase (acetylating); Catalyzes the conversion of acetaldehyde to acetyl-CoA, using NAD(+) and coenzyme A. Is the final enzyme in the meta-cleavage pathway for the degradation of aromatic compounds.


ensembl_gene_id: Psed_4179
symbol: Psed_4179
gene_biotype: protein_coding
description:
  4-hydroxy-2-oxovalerate aldolase; Catalyzes the retro-aldol cleavage of 4-hydroxy-2- oxopentanoate to pyruvate and acetaldehyde. Is involved in the meta- cleavage pathway for the degradation of aromatic compounds. Belongs to the 4-hydroxy-2-oxovalerate aldolase family.


ensembl_gene_id: Psed_4184
symbol: Psed_4184
gene_biotype: protein_coding
description:
  NADPH dehydrogenase; KEGG: mau:Micau_3736 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region.


ensembl_gene_id: Psed_4185
symbol: Psed_4185
gene_biotype: protein_coding
description:
  KEGG: rxy:Rxyl_0364 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal.


ensembl_gene_id: Psed_4186
symbol: Psed_4186
gene_biotype: protein_coding
description:
  2,4-dienoyl-CoA reductase (NADPH); KEGG: mil:ML5_4663 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Psed_4191
symbol: Psed_4191
gene_biotype: protein_coding
description:
  Taurine-transporting ATPase; PFAM: ABC transporter-like; KEGG: mil:ML5_4658 abc transporter related protein; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_4192
symbol: Psed_4192
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: mil:ML5_4657 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Psed_4193
symbol: Psed_4193
gene_biotype: protein_coding
description:
  PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: mil:ML5_4656 short-chain dehydrogenase/reductase sdr; SMART: Polyketide synthase/Fatty acid synthase, KR.


ensembl_gene_id: Psed_4194
symbol: Psed_4194
gene_biotype: protein_coding
description:
  Peptidase dimerization domain protein; PFAM: Peptidase M20, dimerisation; Peptidase M20; KEGG: mil:ML5_4655 peptidase M20.


ensembl_gene_id: Psed_4196
symbol: Psed_4196
gene_biotype: protein_coding
description:
  KEGG: mil:ML5_4653 peroxiredoxin, ohr subfamily; TIGRFAM: Peroxiredoxin, organic hydroperoxide resistance-related; PFAM: Peroxiredoxin, OsmC-like protein.


ensembl_gene_id: Psed_4197
symbol: Psed_4197
gene_biotype: protein_coding
description:
  KEGG: mil:ML5_4651 transcriptional regulator, IclR family; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal.


ensembl_gene_id: Psed_4198
symbol: Psed_4198
gene_biotype: protein_coding
description:
  KEGG: mau:Micau_3749 formyl-CoA transferase; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.


ensembl_gene_id: Psed_4202
symbol: Psed_4202
gene_biotype: protein_coding
description:
  HpcH/HpaI aldolase; PFAM: Aldehyde-lyase domain; KEGG: mau:Micau_3753 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.


ensembl_gene_id: Psed_4204
symbol: Psed_4204
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: kra:Krad_4270 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Psed_4208
symbol: Psed_4208
gene_biotype: protein_coding
description:
  PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: tbi:Tbis_1970 Rieske (2Fe-2S) domain-containing protein.


ensembl_gene_id: Psed_4209
symbol: Psed_4209
gene_biotype: protein_coding
description:
  KEGG: nda:Ndas_1607 putative F420-dependent enzyme; TIGRFAM: F420-binding domain, putative; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain.


ensembl_gene_id: Psed_4211
symbol: Psed_4211
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: rha:RHA1_ro00483 TetR family transcriptional regulator.


ensembl_gene_id: Psed_4212
symbol: Psed_4212
gene_biotype: protein_coding
description:
  TIGRFAM: Tyrosyl-tRNA synthetase, class Ib; KEGG: fre:Franean1_5222 tyrosyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib.


ensembl_gene_id: Psed_4214
symbol: Psed_4214
gene_biotype: protein_coding
description:
  Formyl-CoA transferase; KEGG: rop:ROP_28170 CaiB/BaiF family protein; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.


ensembl_gene_id: Psed_4215
symbol: Psed_4215
gene_biotype: protein_coding
description:
  PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: fre:Franean1_3648 pyridoxamine 5'-phosphate oxidase-related FMN-binding.


ensembl_gene_id: Psed_4219
symbol: Psed_4219
gene_biotype: protein_coding
description:
  Beta-lactamase domain protein; KEGG: amd:AMED_5254 beta-lactamase class B; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like.


ensembl_gene_id: Psed_4222
symbol: Psed_4222
gene_biotype: protein_coding
description:
  PFAM: Major facilitator superfamily MFS-1; KEGG: nda:Ndas_2798 metabolite/H+ symporter, major facilitator superfamily (MFS).


ensembl_gene_id: Psed_4223
symbol: Psed_4223
gene_biotype: protein_coding
description:
  Transcriptional regulator, HxlR family; PFAM: Helix-turn-helix, HxlR type; KEGG: gbr:Gbro_0274 helix-turn-helix domain-containing protein.


ensembl_gene_id: Psed_4229
symbol: Psed_4229
gene_biotype: protein_coding
description:
  Nitrate reductase; KEGG: nda:Ndas_4662 molybdopterin oxidoreductase; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding domain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.


ensembl_gene_id: Psed_4232
symbol: Psed_4232
gene_biotype: protein_coding
description:
  PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: mil:ML5_3028 short-chain dehydrogenase/reductase sdr.


ensembl_gene_id: Psed_4233
symbol: Psed_4233
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_3121 protein serine/threonine phosphatase; PFAM: Sporulation stage II, protein E C-terminal; SMART: Protein phosphatase 2C-like.


ensembl_gene_id: Psed_4235
symbol: Psed_4235
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine-protein kinase-like domain; KEGG: amd:AMED_3149 serine/threonine protein kinase; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain.


ensembl_gene_id: Psed_4237
symbol: Psed_4237
gene_biotype: protein_coding
description:
  PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rop:ROP_pKNR-00040 putative plasmid partitioning protein ParA.


ensembl_gene_id: Psed_4239
symbol: Psed_4239
gene_biotype: protein_coding
description:
  PFAM: Sulphate transporter/antisigma-factor antagonist STAS; KEGG: amd:AMED_5888 anti-anti-sigma factor.


ensembl_gene_id: Psed_4240
symbol: Psed_4240
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_5889 GAF domain-containing serine/threonine phosphatase; PFAM: Sporulation stage II, protein E C-terminal; GAF; SMART: Protein phosphatase 2C-like; GAF.


ensembl_gene_id: Psed_4243
symbol: Psed_4243
gene_biotype: protein_coding
description:
  Transcriptional regulator, PaaX family; PFAM: PaaX-like, C-terminal; PaaX-like, N-terminal; KEGG: sen:SACE_3137 repressor in the phenylacetic acid catabolism.


ensembl_gene_id: Psed_4245
symbol: Psed_4245
gene_biotype: protein_coding
description:
  KEGG: xce:Xcel_0312 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain.


ensembl_gene_id: Psed_4246
symbol: Psed_4246
gene_biotype: protein_coding
description:
  Benzoate--CoA ligase; KEGG: amd:AMED_3360 acetyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase.


ensembl_gene_id: Psed_4247
symbol: Psed_4247
gene_biotype: protein_coding
description:
  Nitrilase; KEGG: bgf:BC1003_4453 nitrilase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.


ensembl_gene_id: Psed_4248
symbol: Psed_4248
gene_biotype: protein_coding
description:
  NADPH dehydrogenase; KEGG: nfa:nfa12450 salicylyl-CoA 5-hydroxylase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Psed_4249
symbol: Psed_4249
gene_biotype: protein_coding
description:
  PFAM: Cupin 2, conserved barrel; KEGG: bgf:BC1003_4454 cupin 2 conserved barrel domain-containing protein.


ensembl_gene_id: Psed_4250
symbol: Psed_4250
gene_biotype: protein_coding
description:
  Ureidoglycolate lyase; KEGG: swi:Swit_0820 5-carboxymethyl-2-hydroxymuconate delta-isomerase; PFAM: Fumarylacetoacetase, C-terminal-like.


ensembl_gene_id: Psed_4251
symbol: maiA
gene_biotype: protein_coding
description:
  Asp/Glu/hydantoin racemase; Catalyzes cis-trans isomerization of the C2-C3 double bond in maleate to yield fumarate.


ensembl_gene_id: Psed_4253
symbol: Psed_4253
gene_biotype: protein_coding
description:
  Beta-Ala-His dipeptidase; KEGG: cai:Caci_6602 hypothetical protein; PFAM: Peptidase M20; Peptidase M20, dimerisation.


ensembl_gene_id: Psed_4256
symbol: Psed_4256
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_3903 LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; Tetratricopeptide TPR-4; SMART: Transcription regulator LuxR, C-terminal; ATPase, AAA+ type, core.


ensembl_gene_id: Psed_4257
symbol: Psed_4257
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_3903 LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal.


ensembl_gene_id: Psed_4259
symbol: Psed_4259
gene_biotype: protein_coding
description:
  Protein of unknown function UPF0118; PFAM: Uncharacterised protein family UPF0118; KEGG: amd:AMED_3910 hypothetical protein.


ensembl_gene_id: Psed_4264
symbol: Psed_4264
gene_biotype: protein_coding
description:
  KEGG: mar:MAE_61320 hypothetical protein; TIGRFAM: Polyphosphate:nucleotide phosphotransferase, PPK2; PFAM: Polyphosphate kinase-2-related.


ensembl_gene_id: Psed_4265
symbol: Psed_4265
gene_biotype: protein_coding
description:
  ATPase, P-type (transporting), HAD superfamily, subfamily IC; SMART: ATPase, P-type cation-transporter, N-terminal; TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: nml:Namu_4121 ATPase; PFAM: ATPase, P-type, ATPase-associated domain; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal.


ensembl_gene_id: Psed_4266
symbol: Psed_4266
gene_biotype: protein_coding
description:
  KEGG: nml:Namu_3444 sulfate transporter; TIGRFAM: Sulphate anion transporter; PFAM: Sulphate transporter; Sulphate transporter/antisigma-factor antagonist STAS.


ensembl_gene_id: Psed_4275
symbol: Psed_4275
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_9148 RNA polymerase sigma-70 factor, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2.


ensembl_gene_id: Psed_4278
symbol: Psed_4278
gene_biotype: protein_coding
description:
  Metal dependent phosphohydrolase; TIGRFAM: Uncharacterised protein family HDIG; PFAM: Metal-dependent phosphohydrolase, HD subdomain; KEGG: mjl:Mjls_3183 metal dependent phosphohydrolase; SMART: Metal-dependent phosphohydrolase, HD domain.


ensembl_gene_id: Psed_4283
symbol: Psed_4283
gene_biotype: protein_coding
description:
  HAMAP: Ferredoxin--NADP reductase, type 2; KEGG: mil:ML5_1109 fad-dependent pyridine nucleotide-disulfide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Psed_4284
symbol: Psed_4284
gene_biotype: protein_coding
description:
  PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: nca:Noca_2142 hypothetical protein.


ensembl_gene_id: Psed_4286
symbol: Psed_4286
gene_biotype: protein_coding
description:
  Transcriptional regulator, IclR family; KEGG: nfa:nfa33170 putative transcriptional regulator; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal.


ensembl_gene_id: Psed_4287
symbol: Psed_4287
gene_biotype: protein_coding
description:
  2-chlorobenzoate 1,2-dioxygenase; KEGG: ppf:Pput_2898 ring hydroxylating dioxygenase, alpha subunit; PFAM: Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal; Rieske [2Fe-2S] iron-sulphur domain.


ensembl_gene_id: Psed_4289
symbol: Psed_4289
gene_biotype: protein_coding
description:
  PFAM: Aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: rop:ROP_46330 p-cumate dioxygenase small subunit.


ensembl_gene_id: Psed_4296
symbol: Psed_4296
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: cai:Caci_1039 transcriptional regulator, TetR family.


ensembl_gene_id: Psed_4299
symbol: Psed_4299
gene_biotype: protein_coding
description:
  KEGG: bcv:Bcav_2807 major facilitator superfamily MFS_1; manually curated; PFAM: Major facilitator superfamily MFS-1.


ensembl_gene_id: Psed_4300
symbol: Psed_4300
gene_biotype: protein_coding
description:
  Nitrate reductase, alpha subunit; SMART: Molybdopterin oxidoreductase, Fe4S4 domain; TIGRFAM: Nitrate reductase, alpha subunit; KEGG: req:REQ_04230 nitrate reductase alpha subunit NarG; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding domain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: Psed_4302
symbol: Psed_4302
gene_biotype: protein_coding
description:
  KEGG: sro:Sros_1922 nitrate reductase delta subunit protein; TIGRFAM: Nitrate reductase chaperone, NarJ; PFAM: DMSO/Nitrate reductase chaperone.


ensembl_gene_id: Psed_4303
symbol: Psed_4303
gene_biotype: protein_coding
description:
  TIGRFAM: Nitrate reductase, gamma subunit; KEGG: nml:Namu_3672 respiratory nitrate reductase subunit gamma; PFAM: Nitrate reductase, gamma subunit.


ensembl_gene_id: Psed_4309
symbol: Psed_4309
gene_biotype: protein_coding
description:
  Haloalkane dehalogenase; KEGG: jan:Jann_2625 alpha/beta hydrolase; PFAM: Alpha/beta hydrolase fold-1.


ensembl_gene_id: Psed_4310
symbol: Psed_4310
gene_biotype: protein_coding
description:
  PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; KEGG: pol:Bpro_5180 mandelate racemase/muconate lactonizing enzyme; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal.


ensembl_gene_id: Psed_4312
symbol: Psed_4312
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: pol:Bpro_5182 TetR family transcriptional regulator.


ensembl_gene_id: Psed_4315
symbol: Psed_4315
gene_biotype: protein_coding
description:
  KEGG: cai:Caci_3610 transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal.


ensembl_gene_id: Psed_4319
symbol: Psed_4319
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; KEGG: sro:Sros_8709 ATPase-like protein; PFAM: Transcription regulator LuxR, C-terminal; Tetratricopeptide TPR-4; SMART: Transcription regulator LuxR, C-terminal.


ensembl_gene_id: Psed_4320
symbol: Psed_4320
gene_biotype: protein_coding
description:
  Alcohol dehydrogenase zinc-binding domain protein; PFAM: Alcohol dehydrogenase, C-terminal; KEGG: rop:ROP_04760 putative oxidoreductase.


ensembl_gene_id: Psed_4322
symbol: Psed_4322
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_3505 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation.


ensembl_gene_id: Psed_4325
symbol: Psed_4325
gene_biotype: protein_coding
description:
  Nitric oxide dioxygenase; KEGG: amd:AMED_3893 phthalate 4,5-dioxygenase; PFAM: Molybdenum cofactor sulfurase, C-terminal; Oxidoreductase, FAD-binding domain; Oxidoreductase FAD/NAD(P)-binding; Ferredoxin.


ensembl_gene_id: Psed_4328
symbol: Psed_4328
gene_biotype: protein_coding
description:
  KEGG: cai:Caci_3634 transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; Metal-dependent phosphohydrolase, HD subdomain; SMART: Transcription regulator LuxR, C-terminal; Metal-dependent phosphohydrolase, HD domain.


ensembl_gene_id: Psed_4333
symbol: Psed_4333
gene_biotype: protein_coding
description:
  PFAM: UBA/THIF-type NAD/FAD binding fold; KEGG: rpx:Rpdx1_2116 UBA/ThiF-type NAD/FAD-binding protein.


ensembl_gene_id: Psed_4337
symbol: Psed_4337
gene_biotype: protein_coding
description:
  Arginase/agmatinase/formiminoglutamase; PFAM: Ureohydrolase; KEGG: pdi:BDI_1757 arginase; Belongs to the arginase family.


ensembl_gene_id: Psed_4343
symbol: Psed_4343
gene_biotype: protein_coding
description:
  Molybdenum-pterin binding protein; KEGG: sen:SACE_0570 molybdate ABC molybdate transporter substrate-binding protein; TIGRFAM: Molybdenum-pterin binding; PFAM: Transport-associated OB, type 1; HTH transcriptional regulator, MerR.


ensembl_gene_id: Psed_4345
symbol: Psed_4345
gene_biotype: protein_coding
description:
  Transcriptional regulator, ArsR family; KEGG: nfa:nfa22980 putative transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR.


ensembl_gene_id: Psed_4347
symbol: Psed_4347
gene_biotype: protein_coding
description:
  TIGRFAM: Conserved hypothetical protein CHP03083, actinobacterial-type; KEGG: mpa:MAP0231c hypothetical protein.


ensembl_gene_id: Psed_4353
symbol: Psed_4353
gene_biotype: protein_coding
description:
  Beta-lactamase domain protein; KEGG: rop:ROP_pROB01-03280 hypothetical protein; PFAM: Beta-lactamase-like; Rhodanese-like; SMART: Beta-lactamase-like; Rhodanese-like.


ensembl_gene_id: Psed_4354
symbol: Psed_4354
gene_biotype: protein_coding
description:
  Rhodanese-like protein; KEGG: rha:RHA1_ro11220 ArsR family transcriptional regulator; PFAM: Rhodanese-like; HTH transcriptional regulator, ArsR; SMART: Rhodanese-like; HTH transcriptional regulator, ArsR.


ensembl_gene_id: Psed_4360
symbol: Psed_4360
gene_biotype: protein_coding
description:
  TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: tcu:Tcur_0090 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase.


ensembl_gene_id: Psed_4361
symbol: Psed_4361
gene_biotype: protein_coding
description:
  PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: mjl:Mjls_0685 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.


ensembl_gene_id: Psed_4362
symbol: Psed_4362
gene_biotype: protein_coding
description:
  Vitamin K epoxide reductase; KEGG: rha:RHA1_ro07031 hypothetical protein; PFAM: Vitamin K epoxide reductase; SMART: Vitamin K epoxide reductase.


ensembl_gene_id: Psed_4369
symbol: Psed_4369
gene_biotype: protein_coding
description:
  PFAM: Cytochrome c oxidase caa3-type, assembly factor CtaG-related; KEGG: cai:Caci_1675 hypothetical protein.


ensembl_gene_id: Psed_4370
symbol: Psed_4370
gene_biotype: protein_coding
description:
  PFAM: Copper resistance protein CopC, core; KEGG: sro:Sros_6847 conserved hypothetical protein of Cu resistance protein CopC-like protein.


ensembl_gene_id: Psed_4375
symbol: mntH
gene_biotype: protein_coding
description:
  Manganese transport protein mntH; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family.


ensembl_gene_id: Psed_4376
symbol: Psed_4376
gene_biotype: protein_coding
description:
  TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: rop:ROP_pROB01-02560 putative cadmium-transporting ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase.


ensembl_gene_id: Psed_4377
symbol: Psed_4377
gene_biotype: protein_coding
description:
  Regulatory protein ArsR; KEGG: nda:Ndas_1791 transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR.


ensembl_gene_id: Psed_4378
symbol: Psed_4378
gene_biotype: protein_coding
description:
  Cation diffusion facilitator family transporter; KEGG: mmi:MMAR_2144 hypothetical protein; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein.


ensembl_gene_id: Psed_4389
symbol: Psed_4389
gene_biotype: protein_coding
description:
  TIGRFAM: Excisionase/Xis, DNA-binding; KEGG: kfl:Kfla_2180 DNA binding domain protein, excisionase family.


ensembl_gene_id: Psed_4391
symbol: Psed_4391
gene_biotype: protein_coding
description:
  PFAM: NUDIX hydrolase domain; KEGG: ami:Amir_1278 NUDIX hydrolase; Belongs to the Nudix hydrolase family.


ensembl_gene_id: Psed_4392
symbol: Psed_4392
gene_biotype: protein_coding
description:
  KEGG: sro:Sros_8675 putative transcriptional regulator, GntR family; PFAM: HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR.


ensembl_gene_id: Psed_4393
symbol: Psed_4393
gene_biotype: protein_coding
description:
  Integrase family protein; KEGG: sna:Snas_6234 regulatory protein GntR HTH; PFAM: Integrase, catalytic core, phage; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; Belongs to the 'phage' integrase family.


ensembl_gene_id: Psed_4399
symbol: Psed_4399
gene_biotype: protein_coding
description:
  Uncharacterized conserved protein UCP033271; PFAM: Uncharacterised protein family UPF0261; KEGG: sen:SACE_5696 hypothetical protein.


ensembl_gene_id: Psed_4401
symbol: Psed_4401
gene_biotype: protein_coding
description:
  DoxX family protein; KEGG: rha:RHA1_ro00971 hypothetical protein; manually curated; PFAM: Uncharacterised protein family YphA.


ensembl_gene_id: Psed_4404
symbol: Psed_4404
gene_biotype: protein_coding
description:
  PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: amd:AMED_5232 aminoglycoside 6'-N-acetyltransferase.


ensembl_gene_id: Psed_4405
symbol: Psed_4405
gene_biotype: protein_coding
description:
  Tetracyclin repressor domain-containing protein; PFAM: Tetracycline transcriptional regulator, TetR, C-terminal; Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sro:Sros_6464 putative transcriptional regulator, TetR family.


ensembl_gene_id: Psed_4407
symbol: Psed_4407
gene_biotype: protein_coding
description:
  KEGG: fre:Franean1_5043 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP03083, actinobacterial-type; PFAM: Domain of unknown function DUF1503.


ensembl_gene_id: Psed_4409
symbol: icmF
gene_biotype: protein_coding
description:
  methylmalonyl-CoA mutase, large subunit; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.


ensembl_gene_id: Psed_4410
symbol: Psed_4410
gene_biotype: protein_coding
description:
  Regulatory protein MarR; KEGG: gob:Gobs_1789 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR.


ensembl_gene_id: Psed_4411
symbol: azoR
gene_biotype: protein_coding
description:
  FMN-dependent NADH-azoreductase; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family.


ensembl_gene_id: Psed_4412
symbol: Psed_4412
gene_biotype: protein_coding
description:
  PFAM: Major facilitator superfamily MFS-1; KEGG: srt:Srot_0667 major facilitator superfamily protein.


ensembl_gene_id: Psed_4413
symbol: Psed_4413
gene_biotype: protein_coding
description:
  ABC-type transporter, periplasmic subunit; PFAM: Periplasmic binding protein; KEGG: fra:Francci3_3150 hypothetical protein.


ensembl_gene_id: Psed_4414
symbol: Psed_4414
gene_biotype: protein_coding
description:
  3-hydroxyisobutyryl-CoA hydrolase; KEGG: fri:FraEuI1c_3494 enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core.


ensembl_gene_id: Psed_4418
symbol: Psed_4418
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: req:REQ_14960 TetR family transcriptional regulator.


ensembl_gene_id: Psed_4419
symbol: Psed_4419
gene_biotype: protein_coding
description:
  TIGRFAM: FAD-linked oxidoreductase; KEGG: rha:RHA1_ro06029 L-gulonolactone oxidase; PFAM: D-arabinono-1,4-lactone oxidase; FAD linked oxidase, N-terminal.


ensembl_gene_id: Psed_4422
symbol: Psed_4422
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: fal:FRAAL4881 putative transcriptional regulator.


ensembl_gene_id: Psed_4423
symbol: Psed_4423
gene_biotype: protein_coding
description:
  PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: pla:Plav_1773 Rieske (2Fe-2S) domain-containing protein.


ensembl_gene_id: Psed_4426
symbol: Psed_4426
gene_biotype: protein_coding
description:
  Transcriptional regulator with cupin sensor, AraC family; KEGG: stp:Strop_0182 helix-turn-helix domain-containing protein; PFAM: Cupin 2, conserved barrel; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain.


ensembl_gene_id: Psed_4427
symbol: Psed_4427
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sna:Snas_2833 transcriptional regulator, TetR family.


ensembl_gene_id: Psed_4430
symbol: Psed_4430
gene_biotype: protein_coding
description:
  KEGG: rha:RHA1_ro03286 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain.


ensembl_gene_id: Psed_4432
symbol: Psed_4432
gene_biotype: protein_coding
description:
  Aryl-alcohol dehydrogenase (NADP(+)); KEGG: ace:Acel_0148 aldo/keto reductase; PFAM: NADP-dependent oxidoreductase domain.


ensembl_gene_id: Psed_4434
symbol: Psed_4434
gene_biotype: protein_coding
description:
  Putative F420-dependent oxidoreductase; KEGG: tcu:Tcur_2334 luciferase-like monooxygenase; TIGRFAM: Luciferase-like, F420-dependent oxidoreductase, Rv2161c, predicted; PFAM: Luciferase-like, subgroup.


ensembl_gene_id: Psed_4441
symbol: Psed_4441
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dvl:Dvul_0299 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Psed_4442
symbol: Psed_4442
gene_biotype: protein_coding
description:
  Regulatory protein MarR; KEGG: cwo:Cwoe_4525 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR.


ensembl_gene_id: Psed_4445
symbol: Psed_4445
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: amd:AMED_7633 TetR family transcriptional regulator.


ensembl_gene_id: Psed_4449
symbol: dnaG
gene_biotype: protein_coding
description:
  DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.


ensembl_gene_id: Psed_4454
symbol: Psed_4454
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_1274 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2.


ensembl_gene_id: Psed_4457
symbol: Psed_4457
gene_biotype: protein_coding
description:
  Deoxyguanosinetriphosphate triphosphohydrolase-like protein; SMART: Metal-dependent phosphohydrolase, HD domain; TIGRFAM: Deoxyguanosinetriphosphate triphosphohydrolase; Uncharacterised protein family HDIG; KEGG: ami:Amir_1271 deoxyguanosinetriphosphate triphosphohydrolase; HAMAP: Deoxyguanosinetriphosphate triphosphohydrolase, type 2; PFAM: Metal-dependent phosphohydrolase, HD subdomain; Belongs to the dGTPase family. Type 2 subfamily.


ensembl_gene_id: Psed_4462
symbol: Psed_4462
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_1937 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal.


ensembl_gene_id: Psed_4463
symbol: Psed_4463
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; KEGG: amd:AMED_6601 two-component system histidine kinase.


ensembl_gene_id: Psed_4465
symbol: Psed_4465
gene_biotype: protein_coding
description:
  Sulfate-transporting ATPase; PFAM: ABC transporter-like; KEGG: amd:AMED_6603 ABC transport system ATP-binding protein; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_4466
symbol: Psed_4466
gene_biotype: protein_coding
description:
  KEGG: nda:Ndas_1941 protein of unknown function DUF21; PFAM: Domain of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated domain; SMART: Cystathionine beta-synthase, core.


ensembl_gene_id: Psed_4467
symbol: Psed_4467
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function DUF21; Cystathionine beta-synthase, core; KEGG: nda:Ndas_1940 protein of unknown function DUF21.


ensembl_gene_id: Psed_4468
symbol: glyQS
gene_biotype: protein_coding
description:
  glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: Psed_4470
symbol: Psed_4470
gene_biotype: protein_coding
description:
  Regulatory protein ArsR; KEGG: sro:Sros_7536 putative transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR.


ensembl_gene_id: Psed_4471
symbol: Psed_4471
gene_biotype: protein_coding
description:
  PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: cwo:Cwoe_1479 activator of HSP90 ATPase 1 family protein.


ensembl_gene_id: Psed_4472
symbol: Psed_4472
gene_biotype: protein_coding
description:
  PFAM: Antibiotic biosynthesis monooxygenase; KEGG: ami:Amir_1263 antibiotic biosynthesis monooxygenase.


ensembl_gene_id: Psed_4473
symbol: Psed_4473
gene_biotype: protein_coding
description:
  Regulatory protein ArsR; KEGG: rer:RER_37090 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR.


ensembl_gene_id: Psed_4474
symbol: Psed_4474
gene_biotype: protein_coding
description:
  Ferric uptake regulator, Fur family; PFAM: Ferric-uptake regulator; KEGG: scb:SCAB_61951 metal uptake regulator; Belongs to the Fur family.


ensembl_gene_id: Psed_4480
symbol: Psed_4480
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function DUF2470; Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: scl:sce4194 hypothetical protein.


ensembl_gene_id: Psed_4482
symbol: era
gene_biotype: protein_coding
description:
  GTP-binding protein Era-like-protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.


ensembl_gene_id: Psed_4485
symbol: Psed_4485
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_1485 CBS domain-containing protein; PFAM: Cystathionine beta-synthase, core; Domain of unknown function DUF21; Transporter-associated domain; SMART: Cystathionine beta-synthase, core.


ensembl_gene_id: Psed_4486
symbol: ybeY
gene_biotype: protein_coding
description:
  Metalloprotease ybeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.


ensembl_gene_id: Psed_4487
symbol: Psed_4487
gene_biotype: protein_coding
description:
  PhoH family protein; KEGG: amd:AMED_6625 phosphate starvation-inducible protein PhoH; manually curated; PFAM: PhoH-like protein.


ensembl_gene_id: Psed_4489
symbol: Psed_4489
gene_biotype: protein_coding
description:
  Acetolactate synthase; KEGG: req:REQ_09650 thiamine pyrophosphate req_0uiring enzyme; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Belongs to the TPP enzyme family.


ensembl_gene_id: Psed_4492
symbol: Psed_4492
gene_biotype: protein_coding
description:
  Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.


ensembl_gene_id: Psed_4493
symbol: dnaJ
gene_biotype: protein_coding
description:
  Chaperone protein dnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]


ensembl_gene_id: Psed_4494
symbol: hrcA
gene_biotype: protein_coding
description:
  Heat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons.


ensembl_gene_id: Psed_4497
symbol: Psed_4497
gene_biotype: protein_coding
description:
  ABC transporter related protein; KEGG: amd:AMED_1356 ATPase component of ABC-type multidrug transport system; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_4500
symbol: Psed_4500
gene_biotype: protein_coding
description:
  Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: Psed_4502
symbol: Psed_4502
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: fal:FRAAL6467 ABC transporter permease protein.


ensembl_gene_id: Psed_4503
symbol: Psed_4503
gene_biotype: protein_coding
description:
  Phosphonate-transporting ATPase; PFAM: ABC transporter-like; KEGG: fal:FRAAL6466 ABC-type transport systems, involved in lipoprotein release, ATPase components; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_4504
symbol: Psed_4504
gene_biotype: protein_coding
description:
  Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; KEGG: fal:FRAAL6465 hypothetical protein.


ensembl_gene_id: Psed_4505
symbol: Psed_4505
gene_biotype: protein_coding
description:
  Sulfite reductase (ferredoxin); KEGG: amd:AMED_6656 ferredoxin-nitrite reductase; PFAM: Nitrite/sulphite reductase 4Fe-4S domain; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.


ensembl_gene_id: Psed_4507
symbol: Psed_4507
gene_biotype: protein_coding
description:
  Adenylylsulfate reductase, thioredoxin dependent; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.


ensembl_gene_id: Psed_4508
symbol: Psed_4508
gene_biotype: protein_coding
description:
  TIGRFAM: Sulphate adenylyltransferase, small subunit; KEGG: sen:SACE_1474 sulfate adenylyltransferase subunit 2; PFAM: Phosphoadenosine phosphosulphate reductase.


ensembl_gene_id: Psed_4509
symbol: Psed_4509
gene_biotype: protein_coding
description:
  Sulfate adenylyltransferase, large subunit; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.


ensembl_gene_id: Psed_4510
symbol: Psed_4510
gene_biotype: protein_coding
description:
  TIGRFAM: ABC transporter, substrate-binding protein, aliphatic sulphonates; KEGG: ami:Amir_1234 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein.


ensembl_gene_id: Psed_4511
symbol: Psed_4511
gene_biotype: protein_coding
description:
  Taurine-transporting ATPase; PFAM: ABC transporter-like; KEGG: ami:Amir_1233 ABC transporter related; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_4512
symbol: Psed_4512
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: amd:AMED_1543 permease component of ABC-type sulfonate/nitrate/taurine transport system.


ensembl_gene_id: Psed_4513
symbol: Psed_4513
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_1472 cobalamin (vitamin B12) biosynthesis CbiX protein; manually curated; PFAM: Cobalamin (vitamin B12) biosynthesis CbiX.


ensembl_gene_id: Psed_4515
symbol: Psed_4515
gene_biotype: protein_coding
description:
  Xenobiotic-transporting ATPase; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: sen:SACE_0056 putative ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_4520
symbol: Psed_4520
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_8411 aromatic compounds degradation protein PaaI; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily.


ensembl_gene_id: Psed_4522
symbol: Psed_4522
gene_biotype: protein_coding
description:
  TIGRFAM: Conserved hypothetical protein CHP03086; Conserved hypothetical protein CHP03083, actinobacterial-type; KEGG: tcu:Tcur_2648 hypothetical protein.


ensembl_gene_id: Psed_4523
symbol: cobB-2
gene_biotype: protein_coding
description:
  NAD-dependent deacetylase; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.


ensembl_gene_id: Psed_4525
symbol: Psed_4525
gene_biotype: protein_coding
description:
  PFAM: Guanine-specific ribonuclease N1/T1; KEGG: sen:SACE_1461 guanine-specific ribonuclease N1 and T1.


ensembl_gene_id: Psed_4527
symbol: Psed_4527
gene_biotype: protein_coding
description:
  Alcohol dehydrogenase zinc-binding domain protein; KEGG: svi:Svir_12740 Zn-dependent oxidoreductase, NADPH:quinone reductase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; SMART: Polyketide synthase, enoylreductase.


ensembl_gene_id: Psed_4529
symbol: lepA
gene_biotype: protein_coding
description:
  GTP-binding protein lepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.


ensembl_gene_id: Psed_4532
symbol: Psed_4532
gene_biotype: protein_coding
description:
  Band 7 protein; KEGG: sen:SACE_2650 integral membrane protein; PFAM: Band 7 protein; SMART: Band 7 protein.


ensembl_gene_id: Psed_4535
symbol: Psed_4535
gene_biotype: protein_coding
description:
  KEGG: mil:ML5_2851 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain.


ensembl_gene_id: Psed_4536
symbol: Psed_4536
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; KEGG: sro:Sros_6198 signal transduction histidine kinase-like protein.


ensembl_gene_id: Psed_4539
symbol: Psed_4539
gene_biotype: protein_coding
description:
  PFAM: Crotonase, core; KEGG: amd:AMED_3863 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: Psed_4541
symbol: Psed_4541
gene_biotype: protein_coding
description:
  Manually curated; PFAM: HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; HTH transcriptional regulator, AraC; KEGG: amd:AMED_0827 AraC family transcriptional regulator; SMART: Helix-turn-helix, AraC type, DNA binding domain.


ensembl_gene_id: Psed_4543
symbol: Psed_4543
gene_biotype: protein_coding
description:
  KEGG: fri:FraEuI1c_1834 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain.


ensembl_gene_id: Psed_4545
symbol: Psed_4545
gene_biotype: protein_coding
description:
  Cytochrome-c oxidase; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.


ensembl_gene_id: Psed_4546
symbol: Psed_4546
gene_biotype: protein_coding
description:
  Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).


ensembl_gene_id: Psed_4547
symbol: Psed_4547
gene_biotype: protein_coding
description:
  TIGRFAM: Asparagine synthase, glutamine-hydrolyzing; KEGG: svi:Svir_10620 asparagine synthase (glutamine-hydrolysing); PFAM: Asparagine synthase; Glutamine amidotransferase, class-II.


ensembl_gene_id: Psed_4548
symbol: Psed_4548
gene_biotype: protein_coding
description:
  PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: stp:Strop_0264 GCN5-related N-acetyltransferase.


ensembl_gene_id: Psed_4550
symbol: Psed_4550
gene_biotype: protein_coding
description:
  Conserved hypothetical protein CHP00147; TIGRFAM: Diacylglycerol/lipid kinase; PFAM: Diacylglycerol kinase, catalytic domain; KEGG: tcu:Tcur_1799 diacylglycerol kinase catalytic subunit; SMART: Diacylglycerol kinase, catalytic domain.


ensembl_gene_id: Psed_4551
symbol: Psed_4551
gene_biotype: protein_coding
description:
  KEGG: tcu:Tcur_1798 alkylglycerone-phosphate synthase; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal.


ensembl_gene_id: Psed_4552
symbol: Psed_4552
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: stp:Strop_2581 regulatory protein, TetR.


ensembl_gene_id: Psed_4553
symbol: Psed_4553
gene_biotype: protein_coding
description:
  Glycerol-3-phosphate dehydrogenase; KEGG: saq:Sare_2773 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase.


ensembl_gene_id: Psed_4555
symbol: Psed_4555
gene_biotype: protein_coding
description:
  KEGG: svi:Svir_10610 iron-sulfur cluster assembly accessory protein; TIGRFAM: FeS cluster insertion; PFAM: FeS cluster biogenesis; Belongs to the HesB/IscA family.


ensembl_gene_id: Psed_4556
symbol: Psed_4556
gene_biotype: protein_coding
description:
  TIGRFAM: Glycerate kinase; KEGG: mil:ML5_3725 glycerate kinase; PFAM: Glycerate kinase; Belongs to the glycerate kinase type-1 family.


ensembl_gene_id: Psed_4558
symbol: Psed_4558
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_1651 cobinamide kinase / conamide phosphate guanylyltransferase; PFAM: Cobinamide kinase/cobinamide phosphate guanyltransferase.


ensembl_gene_id: Psed_4559
symbol: Psed_4559
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_2180 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like.


ensembl_gene_id: Psed_4560
symbol: cobS
gene_biotype: protein_coding
description:
  Cobalamin synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.


ensembl_gene_id: Psed_4561
symbol: Psed_4561
gene_biotype: protein_coding
description:
  TIGRFAM: Branched-chain amino acid aminotransferase II; KEGG: nml:Namu_1869 branched-chain amino acid aminotransferase; PFAM: Aminotransferase, class IV.


ensembl_gene_id: Psed_4563
symbol: pepA
gene_biotype: protein_coding
description:
  Cytosol aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.


ensembl_gene_id: Psed_4565
symbol: Psed_4565
gene_biotype: protein_coding
description:
  TIGRFAM: Dihydrolipoamide dehydrogenase; KEGG: svi:Svir_10500 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation.


ensembl_gene_id: Psed_4566
symbol: Psed_4566
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_1638 dihydrolipoamide succinyltransferase; TIGRFAM: 2-oxoglutarate dehydrogenase, E2 component; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding.


ensembl_gene_id: Psed_4567
symbol: Psed_4567
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function DUF1731, C-terminal; NAD-dependent epimerase/dehydratase; KEGG: rop:ROP_08790 hypothetical protein.


ensembl_gene_id: Psed_4568
symbol: lipB
gene_biotype: protein_coding
description:
  Octanoyltransferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.


ensembl_gene_id: Psed_4570
symbol: Psed_4570
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_2163 putative monooxygenase; TIGRFAM: F420-dependent oxidoreductase-predicted, Rv1855c; PFAM: Luciferase-like, subgroup.


ensembl_gene_id: Psed_4571
symbol: lipA
gene_biotype: protein_coding
description:
  Lipoyl synthase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.


ensembl_gene_id: Psed_4574
symbol: Psed_4574
gene_biotype: protein_coding
description:
  TIGRFAM: Glutamine synthetase type I; KEGG: ami:Amir_0925 glutamine synthetase, type I; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp.


ensembl_gene_id: Psed_4576
symbol: Psed_4576
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; Tetracycline transcriptional regulator, TetR, C-terminal; KEGG: ach:Achl_3639 transcriptional regulator, TetR family.


ensembl_gene_id: Psed_4577
symbol: Psed_4577
gene_biotype: protein_coding
description:
  KEGG: pca:Pcar_2806 cold shock proteins; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein.


ensembl_gene_id: Psed_4579
symbol: Psed_4579
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function DUF1211, TMEM175; KEGG: cwo:Cwoe_0449 protein of unknown function DUF1211.


ensembl_gene_id: Psed_4580
symbol: selO
gene_biotype: protein_coding
description:
  UPF0061 protein ydiU; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family.


ensembl_gene_id: Psed_4581
symbol: Psed_4581
gene_biotype: protein_coding
description:
  TIGRFAM: Pyruvate, phosphate dikinase; KEGG: nml:Namu_4080 pyruvate phosphate dikinase; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile domain; PEP-utilising enzyme; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: Psed_4582
symbol: Psed_4582
gene_biotype: protein_coding
description:
  PFAM: Acriflavin resistance protein; KEGG: sro:Sros_4438 hypothetical protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: Psed_4585
symbol: Psed_4585
gene_biotype: protein_coding
description:
  Manually curated; KEGG: sti:Sthe_1357 peptidase S9 prolyl oligopeptidase active site domain protein.


ensembl_gene_id: Psed_4589
symbol: Psed_4589
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_2353 succinate dehydrogenase iron-sulfur protein; TIGRFAM: Succinate dehydrogenase/fumarate reductase iron-sulphur protein; PFAM: Ferredoxin.


ensembl_gene_id: Psed_4590
symbol: Psed_4590
gene_biotype: protein_coding
description:
  Succinate dehydrogenase (ubiquinone); KEGG: kfl:Kfla_5537 L-aspartate oxidase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal.


ensembl_gene_id: Psed_4592
symbol: Psed_4592
gene_biotype: protein_coding
description:
  KEGG: tcu:Tcur_1121 succinate dehydrogenase and fumarate reductase iron-sulfur protein; TIGRFAM: Succinate dehydrogenase/fumarate reductase iron-sulphur protein; PFAM: 4Fe-4S binding domain; Ferredoxin.


ensembl_gene_id: Psed_4593
symbol: Psed_4593
gene_biotype: protein_coding
description:
  TIGRFAM: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit, low-GC Gram-positive bacteria; KEGG: mil:ML5_2258 succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal.


ensembl_gene_id: Psed_4594
symbol: Psed_4594
gene_biotype: protein_coding
description:
  TIGRFAM: Succinate dehydrogenase, cytochrome b558 subunit; KEGG: saq:Sare_1707 succinate dehydrogenase/fumarate reductase cytochrome b subunit.


ensembl_gene_id: Psed_4595
symbol: Psed_4595
gene_biotype: protein_coding
description:
  PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: nda:Ndas_3924 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Psed_4597
symbol: recA
gene_biotype: protein_coding
description:
  Protein recA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.


ensembl_gene_id: Psed_4599
symbol: Psed_4599
gene_biotype: protein_coding
description:
  PFAM: CoA-transferase family III; KEGG: tbi:Tbis_0993 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.


ensembl_gene_id: Psed_4601
symbol: Psed_4601
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ami:Amir_4955 transcriptional regulator, TetR family.


ensembl_gene_id: Psed_4602
symbol: Psed_4602
gene_biotype: protein_coding
description:
  PFAM: Drug/metabolite transporter; KEGG: nda:Ndas_1398 protein of unknown function DUF6 transmembrane.


ensembl_gene_id: Psed_4603
symbol: Psed_4603
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_1413 DEAD/H associated domain protein; PFAM: DEAD/H associated; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; ATPase, AAA+ type, core; Helicase, C-terminal.


ensembl_gene_id: Psed_4605
symbol: Psed_4605
gene_biotype: protein_coding
description:
  TIGRFAM: Acetoacetyl-CoA synthase; KEGG: amd:AMED_3268 acetoacetyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase.


ensembl_gene_id: Psed_4611
symbol: Psed_4611
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sna:Snas_2881 transcriptional regulator, TetR family.


ensembl_gene_id: Psed_4613
symbol: Psed_4613
gene_biotype: protein_coding
description:
  Membrane protein insertase, YidC/Oxa1 family; KEGG: req:REQ_47430 integral membrane protein; TIGRFAM: Membrane insertion protein, OxaA/YidC; PFAM: Membrane insertion protein, OxaA/YidC.


ensembl_gene_id: Psed_4615
symbol: Psed_4615
gene_biotype: protein_coding
description:
  KEGG: cai:Caci_0175 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal.


ensembl_gene_id: Psed_4616
symbol: Psed_4616
gene_biotype: protein_coding
description:
  KEGG: bcv:Bcav_3542 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain.


ensembl_gene_id: Psed_4618
symbol: Psed_4618
gene_biotype: protein_coding
description:
  Phosphonate-transporting ATPase; PFAM: ABC transporter-like; KEGG: bcv:Bcav_3544 ABC transporter related; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_4619
symbol: Psed_4619
gene_biotype: protein_coding
description:
  DNA-(apurinic or apyrimidinic site) lyase; PFAM: DNA glycosylase/AP lyase, catalytic domain; DNA glycosylase/AP lyase, H2TH DNA-binding; KEGG: ami:Amir_5790 DNA glycosylase/AP lyase, H2TH DNA-binding; SMART: DNA glycosylase/AP lyase, catalytic domain.


ensembl_gene_id: Psed_4621
symbol: Psed_4621
gene_biotype: protein_coding
description:
  Helix-turn-helix domain protein; KEGG: sen:SACE_5879 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3.


ensembl_gene_id: Psed_4622
symbol: Psed_4622
gene_biotype: protein_coding
description:
  CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; KEGG: rop:ROP_67400 phosphatidylglycerophosphate synthase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: Psed_4623
symbol: rimO
gene_biotype: protein_coding
description:
  Ribosomal protein S12 methylthiotransferase rimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.


ensembl_gene_id: Psed_4624
symbol: Psed_4624
gene_biotype: protein_coding
description:
  PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: nfa:nfa38590 N-acetylglutamate synthase.


ensembl_gene_id: Psed_4625
symbol: Psed_4625
gene_biotype: protein_coding
description:
  SMART: Helix-turn-helix, AraC type, DNA binding domain; KEGG: fre:Franean1_7200 AraC family transcriptional regulator.


ensembl_gene_id: Psed_4626
symbol: Psed_4626
gene_biotype: protein_coding
description:
  tRNA/rRNA methyltransferase (SpoU); Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.


ensembl_gene_id: Psed_4627
symbol: Psed_4627
gene_biotype: protein_coding
description:
  YceI family protein; KEGG: sco:SCO2566 hypothetical protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SMART: Lipid/polyisoprenoid-binding, YceI-like; Belongs to the UPF0312 family.


ensembl_gene_id: Psed_4628
symbol: Psed_4628
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_5889 cell division FtsK/SpoIIIE; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase FtsK gamma; SMART: DNA translocase FtsK gamma.


ensembl_gene_id: Psed_4629
symbol: Psed_4629
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function DUF2249; Cupin 2, conserved barrel; KEGG: nca:Noca_4862 hypothetical protein.


ensembl_gene_id: Psed_4631
symbol: Psed_4631
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; PFAM: LexA, DNA-binding domain; KEGG: nca:Noca_4860 transcriptional regulator.


ensembl_gene_id: Psed_4635
symbol: Psed_4635
gene_biotype: protein_coding
description:
  PFAM: Isocitrate lyase/phosphorylmutase; KEGG: aco:Amico_1318 carboxyvinyl-carboxyphosphonatephosphorylmutase.


ensembl_gene_id: Psed_4636
symbol: Psed_4636
gene_biotype: protein_coding
description:
  KEGG: fri:FraEuI1c_4418 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal.


ensembl_gene_id: Psed_4637
symbol: Psed_4637
gene_biotype: protein_coding
description:
  KEGG: gbr:Gbro_2860 5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal.


ensembl_gene_id: Psed_4645
symbol: Psed_4645
gene_biotype: protein_coding
description:
  ABC-type transporter, periplasmic subunit; PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: mdi:METDI1865 putative dipeptide transporter; periplasmic binding component of ABC superfamily (DppA-like).


ensembl_gene_id: Psed_4646
symbol: Psed_4646
gene_biotype: protein_coding
description:
  SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: gtn:GTNG_0477 oligopeptide ABC transporter ATP-binding protein; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Psed_4647
symbol: Psed_4647
gene_biotype: protein_coding
description:
  SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: nfa:nfa1670 putative ABC transporter ATP-binding protein; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Psed_4648
symbol: Psed_4648
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120432 putative permease component of ABC transporter.


ensembl_gene_id: Psed_4649
symbol: Psed_4649
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: msm:MSMEG_1085 dipeptide transport system permease protein DppB.


ensembl_gene_id: Psed_4650
symbol: Psed_4650
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family with UTRA sensor domain protein; KEGG: nfa:nfa24460 putative transcriptional regulator; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR.


ensembl_gene_id: Psed_4651
symbol: rnj
gene_biotype: protein_coding
description:
  Beta-lactamase domain protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.


ensembl_gene_id: Psed_4653
symbol: Psed_4653
gene_biotype: protein_coding
description:
  TIGRFAM: Conserved hypothetical protein CHP03085; Conserved hypothetical protein CHP03083, actinobacterial-type; KEGG: sen:SACE_5900 hypothetical protein.


ensembl_gene_id: Psed_4654
symbol: thyX
gene_biotype: protein_coding
description:
  Thymidylate synthase thyX; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant.


ensembl_gene_id: Psed_4658
symbol: Psed_4658
gene_biotype: protein_coding
description:
  Protein of unknown function DUF6 transmembrane; PFAM: Drug/metabolite transporter; KEGG: sro:Sros_0382 hypothetical protein.


ensembl_gene_id: Psed_4659
symbol: Psed_4659
gene_biotype: protein_coding
description:
  PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: amd:AMED_6309 GCN5-related N-acetyltransferase.


ensembl_gene_id: Psed_4660
symbol: dapB
gene_biotype: protein_coding
description:
  Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.


ensembl_gene_id: Psed_4662
symbol: Psed_4662
gene_biotype: protein_coding
description:
  Processing peptidase; KEGG: sen:SACE_5913 putative zinc protease; PFAM: Peptidase M16, N-terminal; Peptidase M16, C-terminal; Belongs to the peptidase M16 family.


ensembl_gene_id: Psed_4663
symbol: pnp
gene_biotype: protein_coding
description:
  Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.


ensembl_gene_id: Psed_4664
symbol: rpsO
gene_biotype: protein_coding
description:
  Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.


ensembl_gene_id: Psed_4666
symbol: Psed_4666
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibF; SMART: Riboflavin kinase; TIGRFAM: Riboflavin kinase/FAD synthetase; KEGG: req:REQ_19270 riboflavin kinase; PFAM: FAD synthetase; Riboflavin kinase; Belongs to the ribF family.


ensembl_gene_id: Psed_4667
symbol: truB
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.


ensembl_gene_id: Psed_4668
symbol: Psed_4668
gene_biotype: protein_coding
description:
  MATE efflux family protein; KEGG: amd:AMED_6327 DNA-damage-inducible protein F; TIGRFAM: Multi antimicrobial extrusion protein; PFAM: Multi antimicrobial extrusion protein.


ensembl_gene_id: Psed_4670
symbol: Psed_4670
gene_biotype: protein_coding
description:
  PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1; KEGG: ami:Amir_5831 phosphoesterase RecJ domain protein.


ensembl_gene_id: Psed_4671
symbol: rbfA
gene_biotype: protein_coding
description:
  Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.


ensembl_gene_id: Psed_4673
symbol: infB
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.


ensembl_gene_id: Psed_4676
symbol: rimP
gene_biotype: protein_coding
description:
  Ribosome maturation factor rimP; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.


ensembl_gene_id: Psed_4680
symbol: Psed_4680
gene_biotype: protein_coding
description:
  Protein of unknown function UPF0047; KEGG: sen:SACE_5933 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0047; PFAM: Uncharacterised protein family UPF0047.


ensembl_gene_id: Psed_4682
symbol: proS
gene_biotype: protein_coding
description:
  Prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...]


ensembl_gene_id: Psed_4683
symbol: Psed_4683
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_5707 cold shock protein CspA; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein.


ensembl_gene_id: Psed_4684
symbol: Psed_4684
gene_biotype: protein_coding
description:
  PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: kfl:Kfla_4294 pyridoxamine 5'-phosphate oxidase-related FMN-binding protein.


ensembl_gene_id: Psed_4685
symbol: metXA
gene_biotype: protein_coding
description:
  Homoserine O-acetyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine.


ensembl_gene_id: Psed_4686
symbol: Psed_4686
gene_biotype: protein_coding
description:
  TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: amd:AMED_7929 O-acetylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme.


ensembl_gene_id: Psed_4687
symbol: Psed_4687
gene_biotype: protein_coding
description:
  Protein of unknown function DUF328; PFAM: Uncharacterised protein family UPF0246; KEGG: mjl:Mjls_2726 hypothetical protein; Belongs to the UPF0246 family.


ensembl_gene_id: Psed_4690
symbol: Psed_4690
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_5853 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal.


ensembl_gene_id: Psed_4693
symbol: Psed_4693
gene_biotype: protein_coding
description:
  PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: ami:Amir_5865 GCN5-related N-acetyltransferase.


ensembl_gene_id: Psed_4694
symbol: Psed_4694
gene_biotype: protein_coding
description:
  TIGRFAM: Mycothione reductase; KEGG: rha:RHA1_ro06610 mycothione reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation.


ensembl_gene_id: Psed_4696
symbol: Psed_4696
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_6935 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase.


ensembl_gene_id: Psed_4700
symbol: Psed_4700
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_2870 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid/mycolic acid synthase.


ensembl_gene_id: Psed_4701
symbol: Psed_4701
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_2950 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid/mycolic acid synthase.


ensembl_gene_id: Psed_4703
symbol: Psed_4703
gene_biotype: protein_coding
description:
  PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: tcu:Tcur_1893 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.


ensembl_gene_id: Psed_4704
symbol: Psed_4704
gene_biotype: protein_coding
description:
  PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: nda:Ndas_0741 pyridoxamine 5'-phosphate oxidase-related FMN-binding protein.


ensembl_gene_id: Psed_4707
symbol: Psed_4707
gene_biotype: protein_coding
description:
  PFAM: Penicillin-binding protein, transpeptidase; NTF2-like N-terminal transpeptidase; KEGG: amd:AMED_2045 penicillin-binding protein, transpeptidase.


ensembl_gene_id: Psed_4708
symbol: Psed_4708
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_5887 GCN5-related N-acetyltransferase; manually curated; PFAM: GCN5-related N-acetyltransferase (GNAT) domain.


ensembl_gene_id: Psed_4709
symbol: ispG
gene_biotype: protein_coding
description:
  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.


ensembl_gene_id: Psed_4712
symbol: dxr
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.


ensembl_gene_id: Psed_4714
symbol: Psed_4714
gene_biotype: protein_coding
description:
  DNA primase small subunit; KEGG: rop:ROP_52850 hypothetical protein; manually curated; PFAM: DNA primase, small subunit.


ensembl_gene_id: Psed_4715
symbol: Psed_4715
gene_biotype: protein_coding
description:
  TIGRFAM: Conserved hypothetical protein CHP03083, actinobacterial-type; KEGG: gob:Gobs_1595 hypothetical protein.


ensembl_gene_id: Psed_4716
symbol: Psed_4716
gene_biotype: protein_coding
description:
  Regulatory protein MarR; KEGG: kfl:Kfla_5255 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR.


ensembl_gene_id: Psed_4718
symbol: Psed_4718
gene_biotype: protein_coding
description:
  PFAM: DNA ligase, ATP-dependent, central; DNA ligase, ATP-dependent, C-terminal; KEGG: mpa:MAP0341 ATP-dependent DNA ligase.


ensembl_gene_id: Psed_4719
symbol: rlmN
gene_biotype: protein_coding
description:
  Ribosomal RNA large subunit methyltransferase N; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.


ensembl_gene_id: Psed_4720
symbol: Psed_4720
gene_biotype: protein_coding
description:
  PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: bcv:Bcav_4163 pyridoxamine 5'-phosphate oxidase-related protein FMN-binding.


ensembl_gene_id: Psed_4723
symbol: Psed_4723
gene_biotype: protein_coding
description:
  PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: tcu:Tcur_2193 Rieske (2Fe-2S) domain-containing protein.


ensembl_gene_id: Psed_4725
symbol: Psed_4725
gene_biotype: protein_coding
description:
  PFAM: Phosphatidate cytidylyltransferase; KEGG: svi:Svir_09930 CDP-diglyceride synthetase; Belongs to the CDS family.


ensembl_gene_id: Psed_4726
symbol: frr
gene_biotype: protein_coding
description:
  Ribosome-recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.


ensembl_gene_id: Psed_4728
symbol: tsf
gene_biotype: protein_coding
description:
  Elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.


ensembl_gene_id: Psed_4729
symbol: rpsB
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_5911 ribosomal protein S2; TIGRFAM: Ribosomal protein S2, bacteria/mitochondria/plastid; PFAM: Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.


ensembl_gene_id: Psed_4731
symbol: Psed_4731
gene_biotype: protein_coding
description:
  RNA polymerase, sigma 28 subunit, FliA/WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: Psed_4733
symbol: Psed_4733
gene_biotype: protein_coding
description:
  KEGG: mtu:Rv2896c hypothetical protein; TIGRFAM: DNA recombination-mediator protein A; PFAM: DNA recombination-mediator protein A.


ensembl_gene_id: Psed_4734
symbol: Psed_4734
gene_biotype: protein_coding
description:
  Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase-related protein; PFAM: Magnesium chelatase, ChlI subunit; KEGG: req:REQ_18110 magnesium chelatase; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_4735
symbol: Psed_4735
gene_biotype: protein_coding
description:
  UPF0102 protein yraN; TIGRFAM: Uncharacterised protein family UPF0102; HAMAP: Uncharacterised protein family UPF0102; KEGG: svi:Svir_09830 conserved hypothetical protein TIGR00252; PFAM: Uncharacterised protein family UPF0102; Belongs to the UPF0102 family.


ensembl_gene_id: Psed_4738
symbol: Psed_4738
gene_biotype: protein_coding
description:
  TIGRFAM: Peptidase S26A, signal peptidase I; KEGG: amd:AMED_5515 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; Belongs to the peptidase S26 family.


ensembl_gene_id: Psed_4739
symbol: rplS
gene_biotype: protein_coding
description:
  50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.


ensembl_gene_id: Psed_4740
symbol: trmD
gene_biotype: protein_coding
description:
  tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.


ensembl_gene_id: Psed_4744
symbol: rimM
gene_biotype: protein_coding
description:
  Ribosome maturation factor rimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.


ensembl_gene_id: Psed_4745
symbol: Psed_4745
gene_biotype: protein_coding
description:
  HAMAP: Uncharacterised protein family UPF0109, bacterial; KEGG: ami:Amir_5925 hypothetical protein; Belongs to the UPF0109 family.


ensembl_gene_id: Psed_4746
symbol: rpsP
gene_biotype: protein_coding
description:
  TIGRFAM: Ribosomal protein S16; HAMAP: Ribosomal protein S16; KEGG: amd:AMED_1958 small subunit ribosomal protein S16; PFAM: Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.


ensembl_gene_id: Psed_4749
symbol: ffh
gene_biotype: protein_coding
description:
  Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.


ensembl_gene_id: Psed_4751
symbol: Psed_4751
gene_biotype: protein_coding
description:
  KEGG: mmi:MMAR_1788 nitrogen regulatory protein P-II GlnB; PFAM: Nitrogen regulatory protein PII; SMART: Nitrogen regulatory protein PII; Belongs to the P(II) protein family.


ensembl_gene_id: Psed_4752
symbol: glnD
gene_biotype: protein_coding
description:
  UTP-GlnB uridylyltransferase, GlnD; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism.


ensembl_gene_id: Psed_4753
symbol: Psed_4753
gene_biotype: protein_coding
description:
  KEGG: mav:MAV_3774 nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein PII; SMART: Nitrogen regulatory protein PII; Belongs to the P(II) protein family.


ensembl_gene_id: Psed_4754
symbol: Psed_4754
gene_biotype: protein_coding
description:
  KEGG: gbr:Gbro_2079 nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein PII; SMART: Nitrogen regulatory protein PII.


ensembl_gene_id: Psed_4755
symbol: Psed_4755
gene_biotype: protein_coding
description:
  KEGG: rha:RHA1_ro06530 ammonium transporter; TIGRFAM: Ammonium transporter; PFAM: Ammonium transporter.


ensembl_gene_id: Psed_4756
symbol: ftsY
gene_biotype: protein_coding
description:
  Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).


ensembl_gene_id: Psed_4757
symbol: smc
gene_biotype: protein_coding
description:
  Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.


ensembl_gene_id: Psed_4758
symbol: Psed_4758
gene_biotype: protein_coding
description:
  Acylphosphatase; Manually curated; HAMAP: Acylphosphatase; KEGG: sro:Sros_7993 acylphosphatase-like protein; PFAM: Acylphosphatase-like.


ensembl_gene_id: Psed_4760
symbol: Psed_4760
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_5960 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal.


ensembl_gene_id: Psed_4762
symbol: mutM
gene_biotype: protein_coding
description:
  Formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.


ensembl_gene_id: Psed_4763
symbol: rnc
gene_biotype: protein_coding
description:
  Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.


ensembl_gene_id: Psed_4764
symbol: rpmF
gene_biotype: protein_coding
description:
  TIGRFAM: Ribosomal protein L32p; HAMAP: Ribosomal protein L32p; KEGG: ami:Amir_5965 50S ribosomal protein L32; PFAM: Ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family.


ensembl_gene_id: Psed_4767
symbol: coaD
gene_biotype: protein_coding
description:
  Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.


ensembl_gene_id: Psed_4768
symbol: Psed_4768
gene_biotype: protein_coding
description:
  Methyltransferase; KEGG: amd:AMED_1788 methyltransferase; TIGRFAM: RNA methyltransferase, RsmD; PFAM: RNA methyltransferase, RsmD.


ensembl_gene_id: Psed_4769
symbol: Psed_4769
gene_biotype: protein_coding
description:
  Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.


ensembl_gene_id: Psed_4771
symbol: Psed_4771
gene_biotype: protein_coding
description:
  TIGRFAM: DNA helicase, ATP-dependent, RecG; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; Helicase, C-terminal; KEGG: sen:SACE_6119 ATP-dependent DNA helicase RecG; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal.


ensembl_gene_id: Psed_4772
symbol: Psed_4772
gene_biotype: protein_coding
description:
  DAK2 domain fusion protein YloV; KEGG: ami:Amir_5978 Dak phosphatase; TIGRFAM: DAK2 domain-containing protein YloV; PFAM: Dak phosphatase.


ensembl_gene_id: Psed_4773
symbol: rpmB
gene_biotype: protein_coding
description:
  TIGRFAM: Ribosomal protein L28; HAMAP: Ribosomal protein L28; KEGG: nfa:nfa41960 50S ribosomal protein L28; PFAM: Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.


ensembl_gene_id: Psed_4774
symbol: ung
gene_biotype: protein_coding
description:
  Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.


ensembl_gene_id: Psed_4776
symbol: Psed_4776
gene_biotype: protein_coding
description:
  Monovalent cation/proton antiporter, MnhG/PhaG subunit; KEGG: sen:SACE_6539 multisubunit Na+:H+ antiporter MnhG subunit; TIGRFAM: Na+/H+ antiporter subunit; PFAM: Na+/H+ antiporter subunit.


ensembl_gene_id: Psed_4779
symbol: Psed_4779
gene_biotype: protein_coding
description:
  NADH dehydrogenase (quinone); KEGG: sen:SACE_6542 putative monovalent cation/H+ antiporter subunit D; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase.


ensembl_gene_id: Psed_4780
symbol: Psed_4780
gene_biotype: protein_coding
description:
  PFAM: NADH-ubiquinone oxidoreductase chain 4L/K; KEGG: svi:Svir_14760 multisubunit Na+/H+ antiporter, MnhC subunit.


ensembl_gene_id: Psed_4782
symbol: glcB
gene_biotype: protein_coding
description:
  Malate synthase; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.


ensembl_gene_id: Psed_4783
symbol: Psed_4783
gene_biotype: protein_coding
description:
  D-lactate dehydrogenase (cytochrome); KEGG: svi:Svir_02320 FAD/FMN-dependent dehydrogenase; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal.


ensembl_gene_id: Psed_4784
symbol: Psed_4784
gene_biotype: protein_coding
description:
  PFAM: FAD linked oxidase, N-terminal; FAD-linked oxidase, C-terminal; KEGG: svi:Svir_02310 FAD/FMN-dependent dehydrogenase.


ensembl_gene_id: Psed_4785
symbol: Psed_4785
gene_biotype: protein_coding
description:
  Protein of unknown function DUF224 cysteine-rich region domain protein; PFAM: Cysteine-rich domain; 4Fe-4S binding domain; KEGG: svi:Svir_02300 Fe-S oxidoreductase.


ensembl_gene_id: Psed_4787
symbol: Psed_4787
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_3778 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal.


ensembl_gene_id: Psed_4791
symbol: thiL
gene_biotype: protein_coding
description:
  Thiamine-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.


ensembl_gene_id: Psed_4792
symbol: Psed_4792
gene_biotype: protein_coding
description:
  PFAM: Transcription regulator AsnC-type, C-terminal; KEGG: nml:Namu_1487 AsnC family transcriptional regulator.


ensembl_gene_id: Psed_4794
symbol: ddl
gene_biotype: protein_coding
description:
  D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.


ensembl_gene_id: Psed_4795
symbol: Psed_4795
gene_biotype: protein_coding
description:
  Acetate--CoA ligase; KEGG: bxe:Bxe_A2769 putative acetyl-CoA synthetase and ligase; PFAM: AMP-dependent synthetase/ligase.


ensembl_gene_id: Psed_4796
symbol: Psed_4796
gene_biotype: protein_coding
description:
  KEGG: bts:Btus_1727 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain.


ensembl_gene_id: Psed_4798
symbol: Psed_4798
gene_biotype: protein_coding
description:
  PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: gob:Gobs_4542 hypothetical protein.


ensembl_gene_id: Psed_4802
symbol: Psed_4802
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_1134 alpha amylase catalytic region; PFAM: Glycosyl hydrolase, family 13, catalytic domain; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain.


ensembl_gene_id: Psed_4805
symbol: Psed_4805
gene_biotype: protein_coding
description:
  PFAM: Bacterial NAD-glutamate dehydrogenase; KEGG: sen:SACE_1325 NAD-specific glutamate dehydrogenase.


ensembl_gene_id: Psed_4807
symbol: Psed_4807
gene_biotype: protein_coding
description:
  TIGRFAM: ABC transporter ATP-binding protein, ChvD; PFAM: ABC transporter-like; KEGG: mav:MAV_1695 putative ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_4808
symbol: Psed_4808
gene_biotype: protein_coding
description:
  KEGG: req:REQ_30370 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding.


ensembl_gene_id: Psed_4809
symbol: Psed_4809
gene_biotype: protein_coding
description:
  PFAM: Cytochrome c oxidase caa3-type, assembly factor CtaG-related; Copper resistance D; KEGG: sen:SACE_1321 copper resistance transporter.


ensembl_gene_id: Psed_4810
symbol: Psed_4810
gene_biotype: protein_coding
description:
  KEGG: sro:Sros_0115 phosphoprotein phosphatase; PFAM: Sporulation stage II, protein E C-terminal; SMART: Protein phosphatase 2C-like.


ensembl_gene_id: Psed_4811
symbol: Psed_4811
gene_biotype: protein_coding
description:
  PFAM: DNA methylase, adenine-specific; KEGG: sen:SACE_6614 putative type I restriction system adenine methylase.


ensembl_gene_id: Psed_4812
symbol: Psed_4812
gene_biotype: protein_coding
description:
  Integrase family protein; KEGG: sna:Snas_6234 regulatory protein GntR HTH; PFAM: Integrase, catalytic core, phage; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR.


ensembl_gene_id: Psed_4816
symbol: Psed_4816
gene_biotype: protein_coding
description:
  Sulfate-transporting ATPase; PFAM: ABC transporter-like; KEGG: cai:Caci_5722 ABC transporter related; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_4822
symbol: Psed_4822
gene_biotype: protein_coding
description:
  Histidine kinase; KEGG: sma:SAV_4158 two-component system sensor kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain.


ensembl_gene_id: Psed_4823
symbol: Psed_4823
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; KEGG: tfu:Tfu_0343 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal.


ensembl_gene_id: Psed_4829
symbol: Psed_4829
gene_biotype: protein_coding
description:
  Histidine kinase; KEGG: gob:Gobs_0770 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain.


ensembl_gene_id: Psed_4838
symbol: ackA
gene_biotype: protein_coding
description:
  Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.


ensembl_gene_id: Psed_4839
symbol: Psed_4839
gene_biotype: protein_coding
description:
  HAMAP: phosphoketolase; KEGG: mkm:Mkms_2837 putative phosphoketolase; PFAM: Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal; Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase; Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, C-terminal.


ensembl_gene_id: Psed_4840
symbol: Psed_4840
gene_biotype: protein_coding
description:
  KEGG: mau:Micau_2779 CBS domain-containing protein; PFAM: Cystathionine beta-synthase, core; Transport-associated; UspA; SMART: Cystathionine beta-synthase, core.


ensembl_gene_id: Psed_4844
symbol: Psed_4844
gene_biotype: protein_coding
description:
  SMART: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: scb:SCAB_10521 oxidoreductase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.


ensembl_gene_id: Psed_4847
symbol: Psed_4847
gene_biotype: protein_coding
description:
  KEGG: nml:Namu_2400 CBS domain containing protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core.


ensembl_gene_id: Psed_4849
symbol: Psed_4849
gene_biotype: protein_coding
description:
  TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: mjl:Mjls_1106 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase; Haemerythrin/HHE cation-binding motif.


ensembl_gene_id: Psed_4851
symbol: Psed_4851
gene_biotype: protein_coding
description:
  PAS fold-4 domain protein; KEGG: kra:Krad_0433 putative PAS/PAC sensor protein; PFAM: PAS fold-4; SMART: PAS.


ensembl_gene_id: Psed_4857
symbol: Psed_4857
gene_biotype: protein_coding
description:
  KEGG: rer:pREL1_0202 hypothetical protein; manually curated; PFAM: Integrase, N-terminal SAM-like, phage.


ensembl_gene_id: Psed_4858
symbol: Psed_4858
gene_biotype: protein_coding
description:
  KEGG: rer:pREL1_0203 putative transposition helper protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_4861
symbol: Psed_4861
gene_biotype: protein_coding
description:
  PFAM: Cell shape determining protein MreB/Mrl; KEGG: rop:ROP_03780 rod shape-determining protein MreB.


ensembl_gene_id: Psed_4865
symbol: Psed_4865
gene_biotype: protein_coding
description:
  PFAM: Monogalactosyldiacylglycerol synthase; KEGG: saq:Sare_0629 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase-like protein.


ensembl_gene_id: Psed_4866
symbol: Psed_4866
gene_biotype: protein_coding
description:
  Phosphoesterase PA-phosphatase related protein; KEGG: sro:Sros_5318 hypothetical protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SNARE associated Golgi protein; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase.


ensembl_gene_id: Psed_4867
symbol: Psed_4867
gene_biotype: protein_coding
description:
  Phosphoesterase PA-phosphatase related protein; KEGG: nca:Noca_1553 undecaprenyl-diphosphatase; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase.


ensembl_gene_id: Psed_4868
symbol: Psed_4868
gene_biotype: protein_coding
description:
  Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: sco:SCO6358 hypothetical protein.


ensembl_gene_id: Psed_4870
symbol: Psed_4870
gene_biotype: protein_coding
description:
  PFAM: Penicillin-binding protein, transpeptidase; Cell cycle protein; Penicillin-binding protein, dimerisation domain; KEGG: req:REQ_10960 peptidoglycan synthesis protein.


ensembl_gene_id: Psed_4875
symbol: Psed_4875
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function DUF125, transmembrane; KEGG: rha:RHA1_ro04892 hypothetical protein.


ensembl_gene_id: Psed_4879
symbol: Psed_4879
gene_biotype: protein_coding
description:
  KEGG: scb:SCAB_84441 MarR family regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR.


ensembl_gene_id: Psed_4886
symbol: Psed_4886
gene_biotype: protein_coding
description:
  KEGG: nml:Namu_0765 LuxR family two component transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal.


ensembl_gene_id: Psed_4901
symbol: Psed_4901
gene_biotype: protein_coding
description:
  3-mercaptopyruvate sulfurtransferase; PFAM: Rhodanese-like; KEGG: cfl:Cfla_0454 rhodanese domain protein; SMART: Rhodanese-like.


ensembl_gene_id: Psed_4904
symbol: Psed_4904
gene_biotype: protein_coding
description:
  Beta-lactamase domain protein; Manually curated; PFAM: Beta-lactamase-like; KEGG: sro:Sros_3006 metal-dependent hydrolase; SMART: Beta-lactamase-like.


ensembl_gene_id: Psed_4908
symbol: Psed_4908
gene_biotype: protein_coding
description:
  KEGG: fal:FRAAL1950 putative O-succinylbenzoate--CoA ligase (OSB-CoA synthetase) (O-succinylbenzoyl-CoA synthetase); PFAM: AMP-dependent synthetase/ligase.


ensembl_gene_id: Psed_4910
symbol: Psed_4910
gene_biotype: protein_coding
description:
  PFAM: Alpha/beta hydrolase fold-1; Glycosyl transferase, family 28, C-terminal; KEGG: bcv:Bcav_2695 alpha/beta hydrolase fold protein.


ensembl_gene_id: Psed_4912
symbol: Psed_4912
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; KEGG: mva:Mvan_3871 regulatory protein, LuxR; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal.


ensembl_gene_id: Psed_4913
symbol: Psed_4913
gene_biotype: protein_coding
description:
  KEGG: cwo:Cwoe_4409 GntR domain protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR.


ensembl_gene_id: Psed_4914
symbol: Psed_4914
gene_biotype: protein_coding
description:
  PFAM: Glutamine amidotransferase, class-II; KEGG: fal:FRAAL1888 putative glutamine amidotransferase.


ensembl_gene_id: Psed_4915
symbol: Psed_4915
gene_biotype: protein_coding
description:
  PFAM: Glutamate synthase, alpha subunit, C-terminal; KEGG: fri:FraEuI1c_5163 glutamate synthase alpha subunit domain protein.


ensembl_gene_id: Psed_4916
symbol: Psed_4916
gene_biotype: protein_coding
description:
  KEGG: msm:MSMEG_6263 glutamate synthase family protein; PFAM: Glutamate synthase, central-C; Belongs to the glutamate synthase family.


ensembl_gene_id: Psed_4917
symbol: Psed_4917
gene_biotype: protein_coding
description:
  TIGRFAM: Glutamine synthetase, type III; KEGG: msm:MSMEG_6260 glutamine synthetase, type III; PFAM: Glutamine synthetase, catalytic domain.


ensembl_gene_id: Psed_4919
symbol: Psed_4919
gene_biotype: protein_coding
description:
  PFAM: Sarcosine oxidase, delta subunit, heterotetrameric; KEGG: sen:SACE_4493 sarcosine oxidase, delta chain.


ensembl_gene_id: Psed_4920
symbol: Psed_4920
gene_biotype: protein_coding
description:
  KEGG: bvi:Bcep1808_7300 sarcosine oxidase alpha subunit family protein; PFAM: Glycine cleavage T-protein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; Glycine cleavage T-protein, C-terminal barrel; Belongs to the GcvT family.


ensembl_gene_id: Psed_4924
symbol: Psed_4924
gene_biotype: protein_coding
description:
  TIGRFAM: Thiolase; KEGG: amd:AMED_4613 acetyl-CoA acyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Psed_4928
symbol: Psed_4928
gene_biotype: protein_coding
description:
  FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; TIGRFAM: Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A; KEGG: rha:RHA1_ro02225 nitrilotriacetate monoxygenase, component A.


ensembl_gene_id: Psed_4929
symbol: Psed_4929
gene_biotype: protein_coding
description:
  KEGG: sma:SAV_7208 ABC transporter permease protein; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Psed_4930
symbol: Psed_4930
gene_biotype: protein_coding
description:
  Sulfate-transporting ATPase; PFAM: ABC transporter-like; KEGG: sma:SAV_7209 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_4931
symbol: Psed_4931
gene_biotype: protein_coding
description:
  ABC-type transporter, periplasmic subunit family 3; KEGG: sma:SAV_7210 ABC transporter substrate-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3.


ensembl_gene_id: Psed_4935
symbol: Psed_4935
gene_biotype: protein_coding
description:
  KEGG: tbi:Tbis_1595 luciferase-like monooxygenase; TIGRFAM: Luciferase family oxidoreductase, group 1; PFAM: Luciferase-like, subgroup.


ensembl_gene_id: Psed_4936
symbol: Psed_4936
gene_biotype: protein_coding
description:
  Phosphate-transporting ATPase., Nickel-transporting ATPase; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: fri:FraEuI1c_3109 ABC transporter related protein; SMART: ATPase, AAA+ type, core; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Psed_4938
symbol: Psed_4938
gene_biotype: protein_coding
description:
  KEGG: sma:SAV_3609 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR.


ensembl_gene_id: Psed_4940
symbol: Psed_4940
gene_biotype: protein_coding
description:
  Fumarylacetoacetate (FAA) hydrolase; PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: bbt:BBta_2632 putative fumarylacetoacetate (FAA) hydrolase.


ensembl_gene_id: Psed_4941
symbol: Psed_4941
gene_biotype: protein_coding
description:
  Formyl-CoA transferase; KEGG: bbt:BBta_2631 putative formyl-coenzyme A transferase, putative L-carnitine dehydratase; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.


ensembl_gene_id: Psed_4943
symbol: Psed_4943
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: msm:MSMEG_3360 transcriptional regulator, putative.


ensembl_gene_id: Psed_4944
symbol: Psed_4944
gene_biotype: protein_coding
description:
  PFAM: Major facilitator superfamily MFS-1; Collagen-binding surface protein Cna-like, B-type domain; KEGG: cai:Caci_4425 drug resistance transporter, EmrB/QacA subfamily.


ensembl_gene_id: Psed_4945
symbol: Psed_4945
gene_biotype: protein_coding
description:
  Transcriptional regulator, HxlR family; PFAM: Helix-turn-helix, HxlR type; KEGG: msm:MSMEG_3013 putative transcriptional regulator family protein.


ensembl_gene_id: Psed_4946
symbol: Psed_4946
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: fri:FraEuI1c_1863 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Psed_4947
symbol: Psed_4947
gene_biotype: protein_coding
description:
  Regulatory protein ArsR; KEGG: ccs:CCNA_01339 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR.


ensembl_gene_id: Psed_4948
symbol: Psed_4948
gene_biotype: protein_coding
description:
  PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: fri:FraEuI1c_1865 activator of HSP90 ATPase 1 family protein.


ensembl_gene_id: Psed_4949
symbol: Psed_4949
gene_biotype: protein_coding
description:
  KEGG: kfl:Kfla_4633 hydroxypyruvate isomerase; PFAM: Xylose isomerase, TIM barrel domain; Belongs to the hyi family.


ensembl_gene_id: Psed_4952
symbol: Psed_4952
gene_biotype: protein_coding
description:
  KEGG: nml:Namu_2934 D-lactate dehydrogenase (cytochrome); PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal; 4Fe-4S binding domain; Cysteine-rich domain.


ensembl_gene_id: Psed_4964
symbol: Psed_4964
gene_biotype: protein_coding
description:
  SMART: ATPase, AAA+ type, core; TIGRFAM: Daunorubicin resistance ABC transporter ATP-binding subunit; KEGG: sma:SAV_5961 ABC transporter ATP-binding protein; PFAM: ABC transporter-like.


ensembl_gene_id: Psed_4968
symbol: Psed_4968
gene_biotype: protein_coding
description:
  Formyl-CoA transferase; KEGG: rop:ROP_49960 CaiB/BaiF family protein; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.


ensembl_gene_id: Psed_4969
symbol: Psed_4969
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_4854 catechol 1,2-dioxygenase; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal; Catechol dioxygenase, N-terminal.


ensembl_gene_id: Psed_4971
symbol: Psed_4971
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nar:Saro_1865 hypothetical protein.


ensembl_gene_id: Psed_4973
symbol: Psed_4973
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase (acetyl-transferring); PFAM: Transketolase, C-terminal; Transketolase-like, pyrimidine-binding domain; KEGG: sjp:SJA_C1-18660 pyruvate dehydrogenase E1 component beta subunit; SMART: Transketolase-like, pyrimidine-binding domain.


ensembl_gene_id: Psed_4975
symbol: Psed_4975
gene_biotype: protein_coding
description:
  Transcriptional regulator, BadM/Rrf2 family; KEGG: sma:SAV_1362 transcriptional regulator; TIGRFAM: Transcription regulator Rrf2; PFAM: Transcription regulator Rrf2.


ensembl_gene_id: Psed_4979
symbol: Psed_4979
gene_biotype: protein_coding
description:
  KEGG: mjl:Mjls_2672 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR.


ensembl_gene_id: Psed_4980
symbol: Psed_4980
gene_biotype: protein_coding
description:
  Cl- channel voltage-gated family protein; PFAM: Chloride channel, voltage gated; Cystathionine beta-synthase, core; KEGG: fri:FraEuI1c_3288 Cl-channel voltage-gated family protein.


ensembl_gene_id: Psed_4982
symbol: Psed_4982
gene_biotype: protein_coding
description:
  KEGG: rop:ROP_34590 putative molybdenum-pterin binding protein; TIGRFAM: Molybdenum-pterin binding; PFAM: Transport-associated OB, type 1; HTH transcriptional regulator, MerR.


ensembl_gene_id: Psed_4983
symbol: Psed_4983
gene_biotype: protein_coding
description:
  KEGG: bbe:BBR47_29730 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; PFAM: Amidohydrolase 2.


ensembl_gene_id: Psed_4985
symbol: Psed_4985
gene_biotype: protein_coding
description:
  TIGRFAM: Alcohol dehydrogenase, zinc-binding type 2; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; KEGG: sro:Sros_4103 putative alcohol dehydrogenase; SMART: Polyketide synthase, enoylreductase.


ensembl_gene_id: Psed_4989
symbol: Psed_4989
gene_biotype: protein_coding
description:
  DNA ligase D; KEGG: sen:SACE_4181 ATP dependent DNA ligase; TIGRFAM: DNA ligase D; DNA polymerase LigD, ligase domain; PFAM: DNA ligase, ATP-dependent, central; DNA ligase, ATP-dependent, C-terminal; DNA primase, small subunit.


ensembl_gene_id: Psed_4993
symbol: Psed_4993
gene_biotype: protein_coding
description:
  PFAM: Sulphate transporter; Sulphate transporter/antisigma-factor antagonist STAS; KEGG: mba:Mbar_A2518 sulfate transporter.


ensembl_gene_id: Psed_4994
symbol: Psed_4994
gene_biotype: protein_coding
description:
  KEGG: aba:Acid345_3073 zinc-binding alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; SMART: Polyketide synthase, enoylreductase.


ensembl_gene_id: Psed_4995
symbol: Psed_4995
gene_biotype: protein_coding
description:
  NADPH:quinone reductase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: mno:Mnod_8441 alcohol dehydrogenase GroES domain protein; SMART: Polyketide synthase, enoylreductase.


ensembl_gene_id: Psed_4996
symbol: Psed_4996
gene_biotype: protein_coding
description:
  PFAM: Oxidoreductase, molybdopterin-binding domain; KEGG: nml:Namu_0604 oxidoreductase molybdopterin binding.


ensembl_gene_id: Psed_4997
symbol: Psed_4997
gene_biotype: protein_coding
description:
  PFAM: Oxidoreductase, FAD-binding domain; Oxidoreductase FAD/NAD(P)-binding; KEGG: sco:SCO7059 oxidoreductase.


ensembl_gene_id: Psed_4999
symbol: msrA
gene_biotype: protein_coding
description:
  Peptide methionine sulfoxide reductase msrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.


ensembl_gene_id: Psed_5001
symbol: Psed_5001
gene_biotype: protein_coding
description:
  PFAM: Peroxiredoxin, OsmC-like protein; GCN5-related N-acetyltransferase (GNAT) domain; KEGG: sml:Smlt2722 putative OsmC-like protein.


ensembl_gene_id: Psed_5006
symbol: Psed_5006
gene_biotype: protein_coding
description:
  PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bph:Bphy_3981 antibiotic biosynthesis monooxygenase.


ensembl_gene_id: Psed_5008
symbol: Psed_5008
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: saq:Sare_4813 TetR family transcriptional regulator.


ensembl_gene_id: Psed_5009
symbol: Psed_5009
gene_biotype: protein_coding
description:
  Estradiol 17-beta-dehydrogenase; KEGG: mjl:Mjls_0756 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Psed_5011
symbol: Psed_5011
gene_biotype: protein_coding
description:
  PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: msp:Mspyr1_20300 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Psed_5015
symbol: Psed_5015
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_3297 cobalamin synthesis protein; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SMART: Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal.


ensembl_gene_id: Psed_5016
symbol: Psed_5016
gene_biotype: protein_coding
description:
  PFAM: Polyketide cyclase/dehydrase; KEGG: svi:Svir_02520 polyketide cyclase / dehydrase and lipid transport.


ensembl_gene_id: Psed_5017
symbol: Psed_5017
gene_biotype: protein_coding
description:
  Fructokinase; KEGG: saq:Sare_3490 ribokinase-like domain-containing protein; PFAM: Carbohydrate/purine kinase; Belongs to the carbohydrate kinase PfkB family.


ensembl_gene_id: Psed_5020
symbol: Psed_5020
gene_biotype: protein_coding
description:
  KEGG: mil:ML5_2527 php domain protein; PFAM: PHP, C-terminal; SMART: Polymerase/histidinol phosphatase, N-terminal.


ensembl_gene_id: Psed_5022
symbol: Psed_5022
gene_biotype: protein_coding
description:
  D-lactate dehydrogenase (cytochrome); KEGG: rop:ROP_30580 putative FAD-linked oxidase; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal.


ensembl_gene_id: Psed_5024
symbol: menC
gene_biotype: protein_coding
description:
  Mandelate racemase/muconate lactonizing protein; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).


ensembl_gene_id: Psed_5025
symbol: Psed_5025
gene_biotype: protein_coding
description:
  KEGG: cti:RALTA_A3198 cyclohexanone monooxygenase, flavin-containing monooxygenase (FMO); PFAM: FAD dependent oxidoreductase.


ensembl_gene_id: Psed_5026
symbol: Psed_5026
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: tcu:Tcur_3836 TetR family transcriptional regulator.


ensembl_gene_id: Psed_5027
symbol: Psed_5027
gene_biotype: protein_coding
description:
  PFAM: FAD-binding 9, siderophore-interacting; Siderophore-interacting protein; KEGG: fal:FRAAL4326 iron utilization protein (partial match).


ensembl_gene_id: Psed_5028
symbol: Psed_5028
gene_biotype: protein_coding
description:
  KEGG: kra:Krad_3036 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal.


ensembl_gene_id: Psed_5029
symbol: Psed_5029
gene_biotype: protein_coding
description:
  Histidine kinase; KEGG: amd:AMED_6746 two-component system histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain.


ensembl_gene_id: Psed_5030
symbol: uppP
gene_biotype: protein_coding
description:
  Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.


ensembl_gene_id: Psed_5033
symbol: Psed_5033
gene_biotype: protein_coding
description:
  PFAM: Glycosyl transferase, family 2; GtrA-like protein; KEGG: fra:Francci3_0318 glycosyl transferase family protein.


ensembl_gene_id: Psed_5035
symbol: Psed_5035
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: fre:Franean1_6683 TetR family transcriptional regulator.


ensembl_gene_id: Psed_5037
symbol: Psed_5037
gene_biotype: protein_coding
description:
  o-succinylbenzoate--CoA ligase; KEGG: sen:SACE_1293 acyl-CoA synthase; PFAM: AMP-dependent synthetase/ligase.


ensembl_gene_id: Psed_5039
symbol: Psed_5039
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function DUF304l; KEGG: sen:SACE_1222 membrane-flanked domain-containing protein.


ensembl_gene_id: Psed_5041
symbol: Psed_5041
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function DUF853, nucleotide triphosphate hydrolase, putative; KEGG: amd:AMED_7081 hypothetical protein.


ensembl_gene_id: Psed_5042
symbol: orn
gene_biotype: protein_coding
description:
  Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family.


ensembl_gene_id: Psed_5043
symbol: ubiX
gene_biotype: protein_coding
description:
  3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.


ensembl_gene_id: Psed_5045
symbol: Psed_5045
gene_biotype: protein_coding
description:
  Taurine-transporting ATPase; PFAM: ABC transporter-like; KEGG: bbt:BBta_1368 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_5046
symbol: Psed_5046
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rhi:NGR_b01890 putative amino acid ABC transporter, permease protein.


ensembl_gene_id: Psed_5048
symbol: Psed_5048
gene_biotype: protein_coding
description:
  UbiD family decarboxylase; KEGG: sto:ST0052 hypothetical protein; TIGRFAM: Carboxylyase-related; PFAM: Carboxylyase-related; Belongs to the UbiD family.


ensembl_gene_id: Psed_5049
symbol: Psed_5049
gene_biotype: protein_coding
description:
  KEGG: bpy:Bphyt_6204 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR.


ensembl_gene_id: Psed_5051
symbol: Psed_5051
gene_biotype: protein_coding
description:
  PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sen:SACE_2644 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Psed_5055
symbol: Psed_5055
gene_biotype: protein_coding
description:
  Carbon-monoxide dehydrogenase (acceptor); KEGG: rxy:Rxyl_1873 (2Fe-2S)-binding protein; PFAM: [2Fe-2S]-binding; Ferredoxin.


ensembl_gene_id: Psed_5058
symbol: Psed_5058
gene_biotype: protein_coding
description:
  UDP-glucose 4-epimerase; KEGG: mka:MK0724 nucleoside-diphosphate-sugar epimerase; PFAM: NAD-dependent epimerase/dehydratase.


ensembl_gene_id: Psed_5062
symbol: Psed_5062
gene_biotype: protein_coding
description:
  KEGG: cag:Cagg_0349 Crp/Fnr family transcriptional regulator; PFAM: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp; Cyclic nucleotide-binding domain.


ensembl_gene_id: Psed_5063
symbol: Psed_5063
gene_biotype: protein_coding
description:
  TIGRFAM: Conserved hypothetical protein CHP03083, actinobacterial-type; KEGG: ami:Amir_5484 mycothiol-dependent maleylpyruvate isomerase.


ensembl_gene_id: Psed_5064
symbol: Psed_5064
gene_biotype: protein_coding
description:
  (2,3-dihydroxybenzoyl)adenylate synthase; KEGG: saq:Sare_4933 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase.


ensembl_gene_id: Psed_5069
symbol: Psed_5069
gene_biotype: protein_coding
description:
  Transcriptional regulator, PaaX family; PFAM: PaaX-like, C-terminal; PaaX-like, N-terminal; KEGG: bbe:BBR47_49950 phenylacetic acid degradation operon negative regulatory protein.


ensembl_gene_id: Psed_5072
symbol: Psed_5072
gene_biotype: protein_coding
description:
  PFAM: Antibiotic biosynthesis monooxygenase; KEGG: ccs:CCNA_02049 ABM superfamily monooxygenase protein.


ensembl_gene_id: Psed_5073
symbol: Psed_5073
gene_biotype: protein_coding
description:
  Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.


ensembl_gene_id: Psed_5074
symbol: Psed_5074
gene_biotype: protein_coding
description:
  KEGG: gob:Gobs_5039 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal.


ensembl_gene_id: Psed_5075
symbol: Psed_5075
gene_biotype: protein_coding
description:
  KEGG: sro:Sros_7483 MIP family channel protein; TIGRFAM: Aquaporin; PFAM: Major intrinsic protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.


ensembl_gene_id: Psed_5076
symbol: glpK
gene_biotype: protein_coding
description:
  Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.


ensembl_gene_id: Psed_5077
symbol: Psed_5077
gene_biotype: protein_coding
description:
  KEGG: scb:SCAB_36181 glycerol phosphate dehydrogenase; PFAM: FAD dependent oxidoreductase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: Psed_5078
symbol: kynU
gene_biotype: protein_coding
description:
  Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.


ensembl_gene_id: Psed_5079
symbol: kynA
gene_biotype: protein_coding
description:
  Tryptophan 23-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.


ensembl_gene_id: Psed_5084
symbol: Psed_5084
gene_biotype: protein_coding
description:
  PFAM: Major facilitator superfamily MFS-1; KEGG: fri:FraEuI1c_1649 major facilitator superfamily MFS_1.


ensembl_gene_id: Psed_5086
symbol: Psed_5086
gene_biotype: protein_coding
description:
  6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.


ensembl_gene_id: Psed_5087
symbol: Psed_5087
gene_biotype: protein_coding
description:
  Phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1.


ensembl_gene_id: Psed_5088
symbol: Psed_5088
gene_biotype: protein_coding
description:
  TIGRFAM: Conserved hypothetical protein CHP03843; KEGG: sen:SACE_2204 phosphatidylinositol 3-and 4-kinase, catalytic.


ensembl_gene_id: Psed_5090
symbol: Psed_5090
gene_biotype: protein_coding
description:
  TIGRFAM: Phosphomutase MSMEG4193, putative; PFAM: Histidine phosphatase superfamily, clade-1; KEGG: svi:Svir_20000 fructose-2,6-bisphosphatase; SMART: Histidine phosphatase superfamily, clade-1.


ensembl_gene_id: Psed_5092
symbol: Psed_5092
gene_biotype: protein_coding
description:
  PFAM: NADP-dependent oxidoreductase domain; KEGG: svi:Svir_20030 predicted oxidoreductase, aryl-alcohol dehydrogenase like protein.


ensembl_gene_id: Psed_5095
symbol: Psed_5095
gene_biotype: protein_coding
description:
  NADPH:quinone reductase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: rha:RHA1_ro02339 NADPH:quinone reductase; SMART: Polyketide synthase, enoylreductase.


ensembl_gene_id: Psed_5096
symbol: Psed_5096
gene_biotype: protein_coding
description:
  PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: cwo:Cwoe_4573 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Psed_5097
symbol: Psed_5097
gene_biotype: protein_coding
description:
  Succinyl-diaminopimelate desuccinylase; KEGG: svi:Svir_17060 hypothetical protein; PFAM: Peptidase M20; Peptidase M20, dimerisation.


ensembl_gene_id: Psed_5101
symbol: Psed_5101
gene_biotype: protein_coding
description:
  Putative phosphohistidine phosphatase, SixA; KEGG: sen:SACE_5164 phosphohistidine phosphatase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1.


ensembl_gene_id: Psed_5102
symbol: Psed_5102
gene_biotype: protein_coding
description:
  Conserved repeat domain protein; TIGRFAM: Domain of unknown function DUF11; KEGG: sus:Acid_0721 FG-GAP repeat-containing protein.


ensembl_gene_id: Psed_5104
symbol: Psed_5104
gene_biotype: protein_coding
description:
  Regulatory protein MarR; KEGG: rop:ROP_16280 putative MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR.


ensembl_gene_id: Psed_5106
symbol: Psed_5106
gene_biotype: protein_coding
description:
  KEGG: msl:Msil_1993 radical SAM domain protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: Psed_5107
symbol: glmS
gene_biotype: protein_coding
description:
  Glucosamine--fructose-6-phosphate aminotransferase (isomerizing); Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.


ensembl_gene_id: Psed_5110
symbol: Psed_5110
gene_biotype: protein_coding
description:
  Xenobiotic-transporting ATPase., Peptide-transporting ATPase; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; Pentapeptide repeat; KEGG: ami:Amir_6252 ABC transporter related; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_5113
symbol: Psed_5113
gene_biotype: protein_coding
description:
  KEGG: nda:Ndas_3206 putative F420-dependent oxidoreductase; TIGRFAM: F420-dependent oxidoreductase-predicted, Rv3520c; PFAM: Luciferase-like, subgroup.


ensembl_gene_id: Psed_5114
symbol: Psed_5114
gene_biotype: protein_coding
description:
  KEGG: rpc:RPC_2505 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1.


ensembl_gene_id: Psed_5115
symbol: Psed_5115
gene_biotype: protein_coding
description:
  2-oxoglutarate dehydrogenase, E1 subunit; SMART: Transketolase-like, pyrimidine-binding domain; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component; KEGG: ami:Amir_6253 alpha-ketoglutarate decarboxylase; PFAM: Transketolase-like, pyrimidine-binding domain; Dehydrogenase, E1 component; 2-oxoacid dehydrogenase acyltransferase, catalytic domain.


ensembl_gene_id: Psed_5122
symbol: Psed_5122
gene_biotype: protein_coding
description:
  Bilirubin oxidase; KEGG: sen:SACE_1822 spore coat protein (outer); PFAM: Multicopper oxidase, type 2; Multicopper oxidase, type 3; Multicopper oxidase, type 1.


ensembl_gene_id: Psed_5124
symbol: Psed_5124
gene_biotype: protein_coding
description:
  Transcriptional regulator, PadR-like family; PFAM: Transcription regulator PadR N-terminal-like; KEGG: kfl:Kfla_7067 transcriptional regulator, PadR-like family.


ensembl_gene_id: Psed_5126
symbol: Psed_5126
gene_biotype: protein_coding
description:
  PFAM: Luciferase-like, subgroup; KEGG: rha:RHA1_ro11046 limonene 1,2-monooxygenase (NADH-dependent).


ensembl_gene_id: Psed_5127
symbol: Psed_5127
gene_biotype: protein_coding
description:
  Transcriptional regulator, Fis family; PFAM: Helix-turn-helix, Fis-type; GAF; KEGG: msm:MSMEG_1970 sigma factor.


ensembl_gene_id: Psed_5129
symbol: Psed_5129
gene_biotype: protein_coding
description:
  Transcriptional regulator, PadR-like family; PFAM: Transcription regulator PadR N-terminal-like; KEGG: mta:Moth_2210 PadR family transcriptional regulator.


ensembl_gene_id: Psed_5130
symbol: Psed_5130
gene_biotype: protein_coding
description:
  PFAM: ABC-type glycine betaine transport system, substrate-binding domain; KEGG: rop:ROP_60640 putative ABC transporter substrate-binding protein.


ensembl_gene_id: Psed_5131
symbol: Psed_5131
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: aau:AAur_2815 ABC-type proline/glycine betaine transport systems, permease component.


ensembl_gene_id: Psed_5132
symbol: Psed_5132
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: amd:AMED_7958 permease component of ABC-type proline/glycine betaine transport system.


ensembl_gene_id: Psed_5133
symbol: Psed_5133
gene_biotype: protein_coding
description:
  SMART: ATPase, AAA+ type, core; TIGRFAM: Glycine betaine/L-proline transport ATP-binding subunit; KEGG: ami:Amir_6271 ABC transporter related; PFAM: ABC transporter-like.


ensembl_gene_id: Psed_5134
symbol: Psed_5134
gene_biotype: protein_coding
description:
  Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold-4; KEGG: ami:Amir_6278 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS.


ensembl_gene_id: Psed_5135
symbol: Psed_5135
gene_biotype: protein_coding
description:
  Malic protein NAD-binding protein; KEGG: nfa:nfa47090 putative malate dehydrogenase; PFAM: Malic enzyme, NAD-binding; Malic enzyme, N-terminal; SMART: Malic enzyme, NAD-binding.


ensembl_gene_id: Psed_5137
symbol: Psed_5137
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sro:Sros_1993 putative glyoxalase/dioxygenase.


ensembl_gene_id: Psed_5141
symbol: Psed_5141
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; KEGG: amd:AMED_6358 two-component system response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal.


ensembl_gene_id: Psed_5142
symbol: Psed_5142
gene_biotype: protein_coding
description:
  Histidine kinase; KEGG: amd:AMED_6359 two-component system histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; ATPase-like, ATP-binding domain.


ensembl_gene_id: Psed_5143
symbol: Psed_5143
gene_biotype: protein_coding
description:
  Peptidase S24/S26A/S26B, conserved region; KEGG: sen:SACE_6418 hypothetical protein; manually curated; PFAM: Peptidase S24/S26A/S26B, conserved region.


ensembl_gene_id: Psed_5144
symbol: Psed_5144
gene_biotype: protein_coding
description:
  TIGRFAM: Superoxide dismutase, Nickel-type; KEGG: sen:SACE_6419 superoxide dismutase; PFAM: Superoxide dismutase, Nickel-type.


ensembl_gene_id: Psed_5145
symbol: Psed_5145
gene_biotype: protein_coding
description:
  PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: nfa:nfa6830 putative RNA pseudouridylate synthase.


ensembl_gene_id: Psed_5146
symbol: Psed_5146
gene_biotype: protein_coding
description:
  PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: rha:RHA1_ro01543 hypothetical protein.


ensembl_gene_id: Psed_5148
symbol: Psed_5148
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_7967 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1.


ensembl_gene_id: Psed_5152
symbol: Psed_5152
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_6288 diacylglycerol kinase catalytic region; PFAM: Diacylglycerol kinase, catalytic domain; SMART: Diacylglycerol kinase, catalytic domain.


ensembl_gene_id: Psed_5154
symbol: Psed_5154
gene_biotype: protein_coding
description:
  Signal transduction histidine kinase; KEGG: sen:SACE_6427 putative two-component system sensor kinase; PFAM: Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain; PAS fold-4; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain.


ensembl_gene_id: Psed_5156
symbol: Psed_5156
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_6292 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70, actinobacteria; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2.


ensembl_gene_id: Psed_5157
symbol: Psed_5157
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_7976 YbaK/EbsC protein; TIGRFAM: Prolyl-tRNA editing protein, YbaK/EbsC; PFAM: YbaK/aminoacyl-tRNA synthetase-associated domain.


ensembl_gene_id: Psed_5158
symbol: Psed_5158
gene_biotype: protein_coding
description:
  UPF0145 protein ybjQ; KEGG: afo:Afer_1368 protein of unknown function DUF74; HAMAP: Uncharacterised protein family UPF0145; PFAM: Uncharacterised protein family UPF0145; Belongs to the UPF0145 family.


ensembl_gene_id: Psed_5160
symbol: Psed_5160
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function DUF159; KEGG: amd:AMED_7978 hypothetical protein; Belongs to the SOS response-associated peptidase family.


ensembl_gene_id: Psed_5161
symbol: aroA
gene_biotype: protein_coding
description:
  3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.


ensembl_gene_id: Psed_5162
symbol: Psed_5162
gene_biotype: protein_coding
description:
  GTPase EngC; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.


ensembl_gene_id: Psed_5164
symbol: Psed_5164
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_1754 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain.


ensembl_gene_id: Psed_5165
symbol: Psed_5165
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sro:Sros_0302 putative transcriptional regulator, TetR family.


ensembl_gene_id: Psed_5167
symbol: Psed_5167
gene_biotype: protein_coding
description:
  TIGRFAM: Delta-1-pyrroline-5-carboxylate dehydrogenase 1; KEGG: sen:SACE_1979 delta-1-pyrroline-5-carboxylate dehydrogenase precursor; PFAM: Aldehyde dehydrogenase domain.


ensembl_gene_id: Psed_5170
symbol: Psed_5170
gene_biotype: protein_coding
description:
  PFAM: Formate/nitrite transporter; KEGG: kra:Krad_3500 formate/nitrite family of transporters-like protein.


ensembl_gene_id: Psed_5172
symbol: Psed_5172
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_6300 acyltransferase, WS/DGAT/MGAT; TIGRFAM: Acyltransferase, WS/DGAT/MGAT; PFAM: O-acyltransferase, WSD1, N-terminal; Belongs to the long-chain O-acyltransferase family.


ensembl_gene_id: Psed_5173
symbol: Psed_5173
gene_biotype: protein_coding
description:
  tRNA/rRNA methyltransferase (SpoU); KEGG: ami:Amir_6302 RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; SMART: RNA 2-O ribose methyltransferase, substrate binding; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: Psed_5175
symbol: Psed_5175
gene_biotype: protein_coding
description:
  (S)-2-hydroxy-acid oxidase; KEGG: amd:AMED_2112 L-lactate dehydrogenase; PFAM: FMN-dependent dehydrogenase.


ensembl_gene_id: Psed_5177
symbol: Psed_5177
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase; HTH transcriptional regulator, MarR; KEGG: ami:Amir_6303 HAD-superfamily hydrolase, subfamily IA, variant 3; SMART: HTH transcriptional regulator, MarR.


ensembl_gene_id: Psed_5179
symbol: secA
gene_biotype: protein_coding
description:
  Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.


ensembl_gene_id: Psed_5180
symbol: hpf
gene_biotype: protein_coding
description:
  Sigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.


ensembl_gene_id: Psed_5182
symbol: Psed_5182
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_7991 lipoprotein; PFAM: Lipoprotein LpqB, beta-propeller domain, C-terminal; GerMN domain; SMART: GerMN domain.


ensembl_gene_id: Psed_5183
symbol: Psed_5183
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_6309 histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain.


ensembl_gene_id: Psed_5184
symbol: Psed_5184
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_6310 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal.


ensembl_gene_id: Psed_5187
symbol: ahcY
gene_biotype: protein_coding
description:
  Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.


ensembl_gene_id: Psed_5190
symbol: Psed_5190
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: fre:Franean1_5224 TetR family transcriptional regulator.


ensembl_gene_id: Psed_5191
symbol: Psed_5191
gene_biotype: protein_coding
description:
  Glycosyltransferase, MGT family; KEGG: fre:Franean1_5223 glycosyl transferase family protein; TIGRFAM: UDP-glycosyltransferase, MGT; PFAM: Glycosyl transferase, family 28; Glycosyl transferase, family 28, C-terminal.


ensembl_gene_id: Psed_5195
symbol: Psed_5195
gene_biotype: protein_coding
description:
  TIGRFAM: Alanine dehydrogenase/pyridine nucleotide transhydrogenase; KEGG: mkm:Mkms_2150 L-alanine dehydrogenase; PFAM: Alanine dehydrogenase/PNT, N-terminal; Alanine dehydrogenase/PNT, C-terminal; Belongs to the AlaDH/PNT family.


ensembl_gene_id: Psed_5196
symbol: Psed_5196
gene_biotype: protein_coding
description:
  KEGG: mab:MAB_3099c AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type.


ensembl_gene_id: Psed_5197
symbol: Psed_5197
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_8010 cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein.


ensembl_gene_id: Psed_5198
symbol: Psed_5198
gene_biotype: protein_coding
description:
  TIGRFAM: Mannose-6-phosphate isomerase, type I; KEGG: svi:Svir_30990 mannose-6-phosphate isomerase; PFAM: Mannose-6-phosphate isomerase, type I.


ensembl_gene_id: Psed_5200
symbol: Psed_5200
gene_biotype: protein_coding
description:
  Protein of unknown function DUF343; PFAM: Uncharacterised protein family UPF0434/Trm112; KEGG: amd:AMED_8014 hypothetical protein; Belongs to the UPF0434 family.


ensembl_gene_id: Psed_5201
symbol: Psed_5201
gene_biotype: protein_coding
description:
  PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal; KEGG: ami:Amir_6327 phosphomannomutase/phosphoglucomutase.


ensembl_gene_id: Psed_5207
symbol: Psed_5207
gene_biotype: protein_coding
description:
  TIGRFAM: F420-0:gamma-glutamyl ligase; Coenzyme F420 biosynthesis protein FbiB, C-terminal; HAMAP: F420-0:gamma-glutamyl ligase; KEGG: nfa:nfa46200 F420-0--gamma-glutamyl ligase; PFAM: F420-0 gamma-glutamyl ligase-related; Nitroreductase-like.


ensembl_gene_id: Psed_5208
symbol: Psed_5208
gene_biotype: protein_coding
description:
  TIGRFAM: LPPG:Fo 2-phospho-L-lactate transferase; HAMAP: LPPG:FO 2-phospho-L-lactate transferase; KEGG: sen:SACE_6466 LPPG:FO 2-phospho-L-lactate transferase; PFAM: LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052.


ensembl_gene_id: Psed_5209
symbol: Psed_5209
gene_biotype: protein_coding
description:
  Peroxiredoxin; KEGG: tpr:Tpau_3617 peroxiredoxin; PFAM: Glutathione peroxidase; Belongs to the glutathione peroxidase family.


ensembl_gene_id: Psed_5211
symbol: Psed_5211
gene_biotype: protein_coding
description:
  Mannose-1-phosphate guanylyltransferase; KEGG: tpr:Tpau_1064 nucleotidyl transferase; PFAM: Nucleotidyl transferase.


ensembl_gene_id: Psed_5217
symbol: ilvA
gene_biotype: protein_coding
description:
  Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.


ensembl_gene_id: Psed_5219
symbol: Psed_5219
gene_biotype: protein_coding
description:
  Protein of unknown function UPF0118; PFAM: Uncharacterised protein family UPF0118; KEGG: rha:RHA1_ro04285 hypothetical protein.


ensembl_gene_id: Psed_5234
symbol: Psed_5234
gene_biotype: protein_coding
description:
  Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: ami:Amir_6364 integrase family protein; Belongs to the 'phage' integrase family.


ensembl_gene_id: Psed_5235
symbol: Psed_5235
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_3580 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain.


ensembl_gene_id: Psed_5236
symbol: Psed_5236
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sen:SACE_3581 TetR family transcriptional regulator.


ensembl_gene_id: Psed_5238
symbol: purE
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).


ensembl_gene_id: Psed_5239
symbol: purK
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, ATPase subunit; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).


ensembl_gene_id: Psed_5241
symbol: Psed_5241
gene_biotype: protein_coding
description:
  Histidine kinase; KEGG: sen:SACE_6490 sensor kinase, two-component system; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain.


ensembl_gene_id: Psed_5242
symbol: Psed_5242
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_6380 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal.


ensembl_gene_id: Psed_5243
symbol: Psed_5243
gene_biotype: protein_coding
description:
  KEGG: svi:Svir_05970 histidinol-phosphate phosphatase; TIGRFAM: Histidinol-phosphate phosphatase, putative, inositol monophosphatase; PFAM: Inositol monophosphatase.


ensembl_gene_id: Psed_5245
symbol: Psed_5245
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: mab:MAB_3312 TetR family transcriptional regulator.


ensembl_gene_id: Psed_5249
symbol: Psed_5249
gene_biotype: protein_coding
description:
  NADPH:quinone reductase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: fra:Francci3_2731 alcohol dehydrogenase GroES-like protein; SMART: Polyketide synthase, enoylreductase.


ensembl_gene_id: Psed_5250
symbol: Psed_5250
gene_biotype: protein_coding
description:
  PFAM: Major facilitator superfamily MFS-1; KEGG: fri:FraEuI1c_5524 major facilitator superfamily MFS_1.


ensembl_gene_id: Psed_5254
symbol: Psed_5254
gene_biotype: protein_coding
description:
  KEGG: hha:Hhal_2401 BadM/Rrf2 family transcriptional regulator; TIGRFAM: Transcription regulator Rrf2; PFAM: Transcription regulator Rrf2.


ensembl_gene_id: Psed_5255
symbol: Psed_5255
gene_biotype: protein_coding
description:
  KEGG: xau:Xaut_2682 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal.


ensembl_gene_id: Psed_5256
symbol: Psed_5256
gene_biotype: protein_coding
description:
  KEGG: gob:Gobs_2448 LytTr DNA-binding region; PFAM: LytTr, DNA-binding domain; SMART: LytTr, DNA-binding domain.


ensembl_gene_id: Psed_5257
symbol: Psed_5257
gene_biotype: protein_coding
description:
  KEGG: xau:Xaut_2680 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal.


ensembl_gene_id: Psed_5259
symbol: Psed_5259
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function DUF304l; KEGG: sen:SACE_6500 membrane-flanked domain-containing protein.


ensembl_gene_id: Psed_5260
symbol: Psed_5260
gene_biotype: protein_coding
description:
  KEGG: mil:ML5_1093 biotin/acetyl-CoA-carboxylase ligase; TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase; Biotin protein ligase, C-terminal.


ensembl_gene_id: Psed_5261
symbol: Psed_5261
gene_biotype: protein_coding
description:
  KEGG: svi:Svir_05890 acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta); PFAM: Carboxyl transferase.


ensembl_gene_id: Psed_5263
symbol: Psed_5263
gene_biotype: protein_coding
description:
  Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.


ensembl_gene_id: Psed_5264
symbol: Psed_5264
gene_biotype: protein_coding
description:
  Thiosulfate sulfurtransferase; PFAM: Rhodanese-like; KEGG: kra:Krad_3079 rhodanese domain protein; SMART: Rhodanese-like.


ensembl_gene_id: Psed_5267
symbol: Psed_5267
gene_biotype: protein_coding
description:
  Protein of unknown function DUF692; PFAM: Uncharacterised protein family UPF0276; KEGG: mau:Micau_4298 hypothetical protein.


ensembl_gene_id: Psed_5269
symbol: Psed_5269
gene_biotype: protein_coding
description:
  Biotin carboxylase., Pyruvate carboxylase; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; KEGG: mjl:Mjls_1325 carbamoyl-phosphate synthase L chain, ATP-binding; SMART: Biotin carboxylase, C-terminal.


ensembl_gene_id: Psed_5273
symbol: Psed_5273
gene_biotype: protein_coding
description:
  Dihydrolipoyl dehydrogenase; KEGG: ami:Amir_6404 flavoprotein disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation.


ensembl_gene_id: Psed_5275
symbol: Psed_5275
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_6396 carbamoyl-phosphate synthase L chain ATP-binding; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; SMART: Biotin carboxylase, C-terminal.


ensembl_gene_id: Psed_5276
symbol: Psed_5276
gene_biotype: protein_coding
description:
  Citryl-CoA lyase; KEGG: ddr:Deide_10010 putative citrate (pro-3S)-lyase beta chain (citrase); PFAM: Aldehyde-lyase domain; Belongs to the HpcH/HpaI aldolase family.


ensembl_gene_id: Psed_5280
symbol: Psed_5280
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_A2757 putative crotonobetaine/carnitine-CoA ligase; PFAM: AMP-dependent synthetase/ligase.


ensembl_gene_id: Psed_5283
symbol: Psed_5283
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: fre:Franean1_1887 TetR family transcriptional regulator.


ensembl_gene_id: Psed_5284
symbol: Psed_5284
gene_biotype: protein_coding
description:
  PFAM: Alpha/beta hydrolase fold-1; KEGG: hje:HacjB3_06555 putative arylesterase, non-heme chloride peroxidase.


ensembl_gene_id: Psed_5285
symbol: Psed_5285
gene_biotype: protein_coding
description:
  Amidohydrolase; TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: ami:Amir_6414 amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation.


ensembl_gene_id: Psed_5286
symbol: Psed_5286
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_0912 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain.


ensembl_gene_id: Psed_5287
symbol: Psed_5287
gene_biotype: protein_coding
description:
  Purine nucleotide phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.


ensembl_gene_id: Psed_5288
symbol: Psed_5288
gene_biotype: protein_coding
description:
  PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; KEGG: ami:Amir_6422 phosphomannomutase.


ensembl_gene_id: Psed_5290
symbol: Psed_5290
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ami:Amir_6428 transcriptional regulator, TetR family.


ensembl_gene_id: Psed_5291
symbol: Psed_5291
gene_biotype: protein_coding
description:
  KEGG: mjl:Mjls_1267 uracil phosphoribosyltransferase; TIGRFAM: Uracil phosphoribosyl transferase; PFAM: Phosphoribosyltransferase; Belongs to the UPRTase family.


ensembl_gene_id: Psed_5296
symbol: add
gene_biotype: protein_coding
description:
  PFAM: Adenosine/AMP deaminase; TIGRFAM: Adenosine deaminase; HAMAP: Adenosine deaminase; KEGG: sna:Snas_1362 adenosine deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family. Adenosine deaminase subfamily.


ensembl_gene_id: Psed_5298
symbol: Psed_5298
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_2893 MviN-like protein; TIGRFAM: Flagellin assembly, membrane protein MviN; PFAM: Flagellin assembly, membrane protein MviN.


ensembl_gene_id: Psed_5300
symbol: Psed_5300
gene_biotype: protein_coding
description:
  Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: rer:RER_20120 D-alanyl-D-alanine carboxypeptidase; PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal; Belongs to the peptidase S11 family.


ensembl_gene_id: Psed_5301
symbol: Psed_5301
gene_biotype: protein_coding
description:
  Ribonuclease; KEGG: ami:Amir_6469 ribonuclease; TIGRFAM: Conserved hypothetical protein CHP00766, YhjD; Ribonuclease BN; PFAM: Ribonuclease BN-related.


ensembl_gene_id: Psed_5302
symbol: trpS
gene_biotype: protein_coding
description:
  tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: Psed_5305
symbol: Psed_5305
gene_biotype: protein_coding
description:
  Putative F420-dependent oxidoreductase; KEGG: sro:Sros_1533 coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein; TIGRFAM: F420-dependent oxidoreductase, Rv3093c; PFAM: Luciferase-like, subgroup.


ensembl_gene_id: Psed_5307
symbol: Psed_5307
gene_biotype: protein_coding
description:
  FO synthase subunit 2; SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: FO synthase, subunit 1; Complex F420, CofH; FO synthase, subunit 2; KEGG: sen:SACE_6594 FO synthase; HAMAP: FO synthase subunit 2; FO synthase, subunit 1; PFAM: Radical SAM.


ensembl_gene_id: Psed_5308
symbol: Psed_5308
gene_biotype: protein_coding
description:
  PFAM: YbaK/aminoacyl-tRNA synthetase-associated domain; KEGG: mil:ML5_3805 YbaK/prolyl-tRNA synthetase associated region.


ensembl_gene_id: Psed_5309
symbol: Psed_5309
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine-protein kinase-like domain; KEGG: sen:SACE_5901 serine/threonine protein kinase; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain.


ensembl_gene_id: Psed_5310
symbol: Psed_5310
gene_biotype: protein_coding
description:
  TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; KEGG: ami:Amir_6475 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase.


ensembl_gene_id: Psed_5312
symbol: Psed_5312
gene_biotype: protein_coding
description:
  KEGG: gob:Gobs_4413 isocitrate dehydrogenase, NADP-dependent; TIGRFAM: Isocitrate dehydrogenase NADP-dependent, eukaryotic; PFAM: Isocitrate/isopropylmalate dehydrogenase; Belongs to the isocitrate and isopropylmalate dehydrogenases family.


ensembl_gene_id: Psed_5317
symbol: dnaE2
gene_biotype: protein_coding
description:
  Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.


ensembl_gene_id: Psed_5318
symbol: Psed_5318
gene_biotype: protein_coding
description:
  Drug resistance transporter, EmrB/QacA subfamily; KEGG: amd:AMED_4174 major facilitator transporter; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1.


ensembl_gene_id: Psed_5319
symbol: Psed_5319
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: bte:BTH_I2940 TetR family transcriptional regulator.


ensembl_gene_id: Psed_5320
symbol: Psed_5320
gene_biotype: protein_coding
description:
  Thioredoxin; KEGG: fri:FraEuI1c_4664 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain; Belongs to the thioredoxin family.


ensembl_gene_id: Psed_5321
symbol: Psed_5321
gene_biotype: protein_coding
description:
  KEGG: sma:SAV_2809 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; Transcription regulator MerR, DNA binding; SMART: HTH transcriptional regulator, MerR.


ensembl_gene_id: Psed_5322
symbol: Psed_5322
gene_biotype: protein_coding
description:
  (S)-2-hydroxy-acid oxidase; KEGG: fal:FRAAL4104 putative FMN-dependent lactate dehydrogenase; PFAM: FMN-dependent dehydrogenase.


ensembl_gene_id: Psed_5327
symbol: purH
gene_biotype: protein_coding
description:
  Bifunctional purine biosynthesis protein purH; KEGG: ami:Amir_6503 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme, transformylase domain; Methylglyoxal synthase-like domain; TIGRFAM: AICARFT/IMPCHase bienzyme; HAMAP: AICARFT/IMPCHase bienzyme; SMART: AICARFT/IMPCHase bienzyme, transformylase domain; Methylglyoxal synthase-like domain.


ensembl_gene_id: Psed_5328
symbol: purN
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.


ensembl_gene_id: Psed_5331
symbol: sucD
gene_biotype: protein_coding
description:
  succinyl-CoA synthetase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.


ensembl_gene_id: Psed_5332
symbol: sucC
gene_biotype: protein_coding
description:
  Succinyl-CoA ligase (ADP-forming) subunit beta; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.


ensembl_gene_id: Psed_5335
symbol: Psed_5335
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_6681 putative ATP-dependent DNA helicase; TIGRFAM: DNA helicase, ATP-dependent, PcrA type; PFAM: DNA helicase, UvrD/REP type.


ensembl_gene_id: Psed_5336
symbol: Psed_5336
gene_biotype: protein_coding
description:
  TIGRFAM: Chorismate mutase, high GC Gram-positive bacteria/archaeal; PFAM: Chorismate mutase, type II; KEGG: sen:SACE_6683 chorismate mutase; SMART: Chorismate mutase.


ensembl_gene_id: Psed_5341
symbol: Psed_5341
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_6525 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain.


ensembl_gene_id: Psed_5342
symbol: Psed_5342
gene_biotype: protein_coding
description:
  Putative signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Phage shock domain; KEGG: amd:AMED_0787 two-component system sensor kinase.


ensembl_gene_id: Psed_5345
symbol: Psed_5345
gene_biotype: protein_coding
description:
  PFAM: Methylenetetrahydrofolate reductase; KEGG: adg:Adeg_0345 methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.


ensembl_gene_id: Psed_5348
symbol: Psed_5348
gene_biotype: protein_coding
description:
  KEGG: mav:MAV_3971 death-on-curing protein; TIGRFAM: Death-on-curing protein; PFAM: Filamentation induced by cAMP/death on curing-related.


ensembl_gene_id: Psed_5350
symbol: Psed_5350
gene_biotype: protein_coding
description:
  Manually curated; TIGRFAM: IMP dehydrogenase-related 2; KEGG: sen:SACE_6707 inosine 5-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase.


ensembl_gene_id: Psed_5351
symbol: guaB
gene_biotype: protein_coding
description:
  Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.


ensembl_gene_id: Psed_5354
symbol: Psed_5354
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; Manually curated; TIGRFAM: RNA polymerase sigma-70; KEGG: svi:Svir_04710 RNA polymerase sigma factor, sigma-70 family; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Psed_5355
symbol: Psed_5355
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_6539 two component transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain.


ensembl_gene_id: Psed_5357
symbol: Psed_5357
gene_biotype: protein_coding
description:
  Regulatory protein MerR; KEGG: ami:Amir_6541 transcriptional regulator, MerR family; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR.


ensembl_gene_id: Psed_5359
symbol: groL
gene_biotype: protein_coding
description:
  60 kDa chaperonin; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.


ensembl_gene_id: Psed_5360
symbol: groS
gene_biotype: protein_coding
description:
  10 kDa chaperonin; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.


ensembl_gene_id: Psed_5361
symbol: Psed_5361
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: gbr:Gbro_1246 pyrrolo-quinoline quinone beta-propeller repeat-containing protein.


ensembl_gene_id: Psed_5362
symbol: Psed_5362
gene_biotype: protein_coding
description:
  Aryl-alcohol dehydrogenase (NADP(+)); KEGG: sen:SACE_0624 aldo/keto reductase family oxidoreductase; PFAM: NADP-dependent oxidoreductase domain.


ensembl_gene_id: Psed_5363
symbol: tsaD
gene_biotype: protein_coding
description:
  O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.


ensembl_gene_id: Psed_5364
symbol: Psed_5364
gene_biotype: protein_coding
description:
  KEGG: mav:MAV_4368 ribosomal-protein-alanine acetyltransferase; TIGRFAM: Ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain.


ensembl_gene_id: Psed_5365
symbol: Psed_5365
gene_biotype: protein_coding
description:
  Universal protein YeaZ; KEGG: ami:Amir_6548 peptidase M22 glycoprotease; TIGRFAM: Conserved hypothetical protein CHP03725, YeaZ; PFAM: Peptidase M22, glycoprotease.


ensembl_gene_id: Psed_5366
symbol: Psed_5366
gene_biotype: protein_coding
description:
  KEGG: nca:Noca_3196 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase.


ensembl_gene_id: Psed_5367
symbol: Psed_5367
gene_biotype: protein_coding
description:
  KEGG: req:REQ_35300 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0079, ATPase bacteria; PFAM: Uncharacterised protein family UPF0079, ATPase bacteria.


ensembl_gene_id: Psed_5369
symbol: Psed_5369
gene_biotype: protein_coding
description:
  Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.


ensembl_gene_id: Psed_5370
symbol: nnrE
gene_biotype: protein_coding
description:
  YjeF-related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.  Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epi [...]


ensembl_gene_id: Psed_5375
symbol: glmM
gene_biotype: protein_coding
description:
  Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.


ensembl_gene_id: Psed_5376
symbol: rpsI
gene_biotype: protein_coding
description:
  PFAM: Ribosomal protein S9; KEGG: nml:Namu_1177 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.


ensembl_gene_id: Psed_5377
symbol: rplM
gene_biotype: protein_coding
description:
  Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.


ensembl_gene_id: Psed_5380
symbol: Psed_5380
gene_biotype: protein_coding
description:
  PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: gob:Gobs_4039 GCN5-related N-acetyltransferase.


ensembl_gene_id: Psed_5383
symbol: Psed_5383
gene_biotype: protein_coding
description:
  Cytosine deaminase; KEGG: bbt:BBta_2105 putative N-isopropylammelide isopropylaminohydrolase; PFAM: Amidohydrolase 3.


ensembl_gene_id: Psed_5386
symbol: Psed_5386
gene_biotype: protein_coding
description:
  KEGG: fri:FraEuI1c_4980 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; Cupin 2, conserved barrel; SMART: Helix-turn-helix type 3.


ensembl_gene_id: Psed_5389
symbol: Psed_5389
gene_biotype: protein_coding
description:
  Secretion protein snm4; KEGG: sro:Sros_8100 hypothetical protein; TIGRFAM: Type VII secretion system protein EccD; PFAM: Type VII secretion system protein EccD.


ensembl_gene_id: Psed_5390
symbol: Psed_5390
gene_biotype: protein_coding
description:
  PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; KEGG: tpr:Tpau_0863 peptidase S8 and S53 subtilisin kexin sedolisin; Belongs to the peptidase S8 family.


ensembl_gene_id: Psed_5391
symbol: Psed_5391
gene_biotype: protein_coding
description:
  Protein of unknown function DUF690; PFAM: Type VII secretion system protein EccB; KEGG: gbr:Gbro_3295 hypothetical protein.


ensembl_gene_id: Psed_5392
symbol: Psed_5392
gene_biotype: protein_coding
description:
  KEGG: sco:SCO1070 two component system response regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal.


ensembl_gene_id: Psed_5393
symbol: Psed_5393
gene_biotype: protein_coding
description:
  Histidine kinase; KEGG: sco:SCO1071 two component system sensor kinase; PFAM: Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain.


ensembl_gene_id: Psed_5395
symbol: truA
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.


ensembl_gene_id: Psed_5396
symbol: rplQ
gene_biotype: protein_coding
description:
  TIGRFAM: Ribosomal protein L17; HAMAP: Ribosomal protein L17; KEGG: tpr:Tpau_3381 ribosomal protein L17; PFAM: Ribosomal protein L17.


ensembl_gene_id: Psed_5397
symbol: rpoA
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: Psed_5398
symbol: rpsD
gene_biotype: protein_coding
description:
  Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.


ensembl_gene_id: Psed_5399
symbol: rpsK
gene_biotype: protein_coding
description:
  30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.


ensembl_gene_id: Psed_5400
symbol: rpsM
gene_biotype: protein_coding
description:
  30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.


ensembl_gene_id: Psed_5401
symbol: rpmJ
gene_biotype: protein_coding
description:
  TIGRFAM: Ribosomal protein L36; HAMAP: Ribosomal protein L36; KEGG: ami:Amir_6587 ribosomal protein L36; PFAM: Ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.


ensembl_gene_id: Psed_5402
symbol: infA
gene_biotype: protein_coding
description:
  Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.


ensembl_gene_id: Psed_5404
symbol: Psed_5404
gene_biotype: protein_coding
description:
  NAD(P)(+) transhydrogenase (AB-specific); The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.


ensembl_gene_id: Psed_5406
symbol: Psed_5406
gene_biotype: protein_coding
description:
  NAD(P)(+) transhydrogenase (AB-specific); KEGG: rop:ROP_12860 nicotinamide nucleotide transhydrogenase alpha subunit 1 PntAA; PFAM: Alanine dehydrogenase/PNT, C-terminal; Alanine dehydrogenase/PNT, N-terminal.


ensembl_gene_id: Psed_5408
symbol: adk
gene_biotype: protein_coding
description:
  Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.


ensembl_gene_id: Psed_5409
symbol: secY
gene_biotype: protein_coding
description:
  Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.


ensembl_gene_id: Psed_5410
symbol: rplO
gene_biotype: protein_coding
description:
  Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.


ensembl_gene_id: Psed_5411
symbol: rpmD
gene_biotype: protein_coding
description:
  KEGG: kra:Krad_0706 ribosomal protein L30; TIGRFAM: Ribosomal protein L30, bacterial-type; PFAM: Ribosomal protein L30, ferredoxin-like fold domain.


ensembl_gene_id: Psed_5412
symbol: rpsE
gene_biotype: protein_coding
description:
  Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.


ensembl_gene_id: Psed_5413
symbol: rplR
gene_biotype: protein_coding
description:
  Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.


ensembl_gene_id: Psed_5414
symbol: rplF
gene_biotype: protein_coding
description:
  Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.


ensembl_gene_id: Psed_5415
symbol: rpsH
gene_biotype: protein_coding
description:
  Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.


ensembl_gene_id: Psed_5416
symbol: rpsZ
gene_biotype: protein_coding
description:
  Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.


ensembl_gene_id: Psed_5417
symbol: rplE
gene_biotype: protein_coding
description:
  Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.


ensembl_gene_id: Psed_5418
symbol: rplX
gene_biotype: protein_coding
description:
  Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.


ensembl_gene_id: Psed_5419
symbol: rplN
gene_biotype: protein_coding
description:
  Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.


ensembl_gene_id: Psed_5420
symbol: rpsQ
gene_biotype: protein_coding
description:
  30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.


ensembl_gene_id: Psed_5421
symbol: rpmC
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_6606 ribosomal protein L29; TIGRFAM: Ribosomal protein L29; PFAM: Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.


ensembl_gene_id: Psed_5422
symbol: rplP
gene_biotype: protein_coding
description:
  50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.


ensembl_gene_id: Psed_5423
symbol: rpsC
gene_biotype: protein_coding
description:
  Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.


ensembl_gene_id: Psed_5424
symbol: rplV
gene_biotype: protein_coding
description:
  Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.


ensembl_gene_id: Psed_5425
symbol: rpsS
gene_biotype: protein_coding
description:
  Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.


ensembl_gene_id: Psed_5426
symbol: rplB
gene_biotype: protein_coding
description:
  Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.


ensembl_gene_id: Psed_5427
symbol: rplW
gene_biotype: protein_coding
description:
  Ribosomal protein L25/L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.


ensembl_gene_id: Psed_5429
symbol: rplC
gene_biotype: protein_coding
description:
  50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.


ensembl_gene_id: Psed_5430
symbol: rpsJ
gene_biotype: protein_coding
description:
  30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.


ensembl_gene_id: Psed_5431
symbol: tuf
gene_biotype: protein_coding
description:
  Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.


ensembl_gene_id: Psed_5432
symbol: fusA
gene_biotype: protein_coding
description:
  Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]


ensembl_gene_id: Psed_5433
symbol: rpsG
gene_biotype: protein_coding
description:
  Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.


ensembl_gene_id: Psed_5434
symbol: rpsL
gene_biotype: protein_coding
description:
  Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.


ensembl_gene_id: Psed_5435
symbol: rpoC
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: Psed_5438
symbol: rplL
gene_biotype: protein_coding
description:
  50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.


ensembl_gene_id: Psed_5439
symbol: rplJ
gene_biotype: protein_coding
description:
  50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.


ensembl_gene_id: Psed_5442
symbol: Psed_5442
gene_biotype: protein_coding
description:
  Virulence factor Mce family protein; KEGG: sen:SACE_6858 putative secreted protein; TIGRFAM: Mammalian cell entry; PFAM: Mammalian cell entry-related.


ensembl_gene_id: Psed_5443
symbol: Psed_5443
gene_biotype: protein_coding
description:
  Virulence factor Mce family protein; KEGG: amd:AMED_1775 ABC transport system substrate-binding protein; TIGRFAM: Mammalian cell entry; PFAM: Mammalian cell entry-related.


ensembl_gene_id: Psed_5444
symbol: Psed_5444
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_6860 MCE family protein; TIGRFAM: Mammalian cell entry; PFAM: Mammalian cell entry-related.


ensembl_gene_id: Psed_5445
symbol: Psed_5445
gene_biotype: protein_coding
description:
  KEGG: svi:Svir_03740 virulence factor Mce family protein; TIGRFAM: Mammalian cell entry; PFAM: Mammalian cell entry-related.


ensembl_gene_id: Psed_5446
symbol: Psed_5446
gene_biotype: protein_coding
description:
  Virulence factor Mce family protein; KEGG: amd:AMED_0605 ABC transport system substrate-binding protein; TIGRFAM: Mammalian cell entry; PFAM: Mammalian cell entry-related.


ensembl_gene_id: Psed_5447
symbol: Psed_5447
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_6863 putative Mce family protein; TIGRFAM: Mammalian cell entry; PFAM: Mammalian cell entry-related.


ensembl_gene_id: Psed_5450
symbol: Psed_5450
gene_biotype: protein_coding
description:
  Fe(3+)-transporting ATPase; PFAM: ABC transporter-like; KEGG: svi:Svir_03690 ABC-type transport system involved in resistance to organic solvents, ATPase component; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_5453
symbol: Psed_5453
gene_biotype: protein_coding
description:
  Alcohol dehydrogenase GroES domain protein; KEGG: rop:ROP_pROB01-04070 putative alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; SMART: Polyketide synthase, enoylreductase.


ensembl_gene_id: Psed_5454
symbol: Psed_5454
gene_biotype: protein_coding
description:
  Histidine kinase; KEGG: mva:Mvan_0011 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain.


ensembl_gene_id: Psed_5455
symbol: Psed_5455
gene_biotype: protein_coding
description:
  KEGG: mva:Mvan_0010 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal.


ensembl_gene_id: Psed_5459
symbol: Psed_5459
gene_biotype: protein_coding
description:
  KEGG: pzu:PHZ_c3113 transcriptional regulator, GntR family; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR.


ensembl_gene_id: Psed_5460
symbol: Psed_5460
gene_biotype: protein_coding
description:
  Alpha-methylacyl-CoA racemase; KEGG: svi:Svir_23620 predicted acyl-CoA transferase/carnitine dehydratase; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.


ensembl_gene_id: Psed_5461
symbol: rplA
gene_biotype: protein_coding
description:
  Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.


ensembl_gene_id: Psed_5462
symbol: rplK
gene_biotype: protein_coding
description:
  Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.


ensembl_gene_id: Psed_5463
symbol: nusG
gene_biotype: protein_coding
description:
  NusG antitermination factor; Participates in transcription elongation, termination and antitermination.


ensembl_gene_id: Psed_5464
symbol: secE
gene_biotype: protein_coding
description:
  Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.


ensembl_gene_id: Psed_5469
symbol: rpmG-2
gene_biotype: protein_coding
description:
  TIGRFAM: Ribosomal protein L33; HAMAP: Ribosomal protein L33; KEGG: nfa:nfa51190 50S ribosomal protein L33; PFAM: Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.


ensembl_gene_id: Psed_5472
symbol: Psed_5472
gene_biotype: protein_coding
description:
  KEGG: sna:Snas_1757 transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; Tetratricopeptide TPR-4; SMART: Transcription regulator LuxR, C-terminal.


ensembl_gene_id: Psed_5474
symbol: Psed_5474
gene_biotype: protein_coding
description:
  4-coumarate--CoA ligase; KEGG: amd:AMED_0996 long-chain acyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase.


ensembl_gene_id: Psed_5477
symbol: Psed_5477
gene_biotype: protein_coding
description:
  Transcriptional activator, TenA family; Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway. Thus, catalyzes the conversion of 4- amino-5-aminomethyl-2-methylpyrimidine to 4-amino-5-hydroxymethyl-2- methylpyrimidine (HMP); Belongs to the TenA family.


ensembl_gene_id: Psed_5480
symbol: Psed_5480
gene_biotype: protein_coding
description:
  PFAM: Small multidrug resistance protein; KEGG: fra:Francci3_2692 small multidrug resistance protein.


ensembl_gene_id: Psed_5485
symbol: Psed_5485
gene_biotype: protein_coding
description:
  KEGG: scb:SCAB_3531 hypothetical protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily.


ensembl_gene_id: Psed_5487
symbol: Psed_5487
gene_biotype: protein_coding
description:
  Helix-turn-helix domain protein; KEGG: sen:SACE_6312 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; Cupin 2, conserved barrel; SMART: Helix-turn-helix type 3.


ensembl_gene_id: Psed_5488
symbol: Psed_5488
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: stp:Strop_3403 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Psed_5492
symbol: Psed_5492
gene_biotype: protein_coding
description:
  Putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific; KEGG: amd:AMED_4233 HemK protein; TIGRFAM: Conserved hypothetical protein CHP03704, protein-(glutamine-N5) methyltransferase; Modification methylase HemK; PFAM: Methyltransferase small.


ensembl_gene_id: Psed_5494
symbol: Psed_5494
gene_biotype: protein_coding
description:
  Regulatory protein TetR; KEGG: ami:Amir_3310 transcriptional regulator, TetR family; manually curated; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal.


ensembl_gene_id: Psed_5495
symbol: Psed_5495
gene_biotype: protein_coding
description:
  PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: lwe:lwe2751 3-ketoacyl-(acyl-carrier-protein) reductase; SMART: Polyketide synthase/Fatty acid synthase, KR.


ensembl_gene_id: Psed_5496
symbol: Psed_5496
gene_biotype: protein_coding
description:
  Regulatory protein MerR; KEGG: amd:AMED_7834 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR.


ensembl_gene_id: Psed_5497
symbol: Psed_5497
gene_biotype: protein_coding
description:
  Butyryl-CoA dehydrogenase; KEGG: rop:ROP_13220 putative acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal.


ensembl_gene_id: Psed_5498
symbol: Psed_5498
gene_biotype: protein_coding
description:
  PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: msm:MSMEG_0715 3-oxoacyl-[acyl-carrier-protein] reductase; SMART: Polyketide synthase/Fatty acid synthase, KR.


ensembl_gene_id: Psed_5500
symbol: Psed_5500
gene_biotype: protein_coding
description:
  acetyl-CoA acetyltransferase; TIGRFAM: Thiolase; KEGG: rha:RHA1_ro05543 thiolase; PFAM: Thiolase, C-terminal; Thiolase, N-terminal; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Psed_5501
symbol: Psed_5501
gene_biotype: protein_coding
description:
  PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: cwo:Cwoe_4573 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Psed_5504
symbol: Psed_5504
gene_biotype: protein_coding
description:
  5-oxoprolinase (ATP-hydrolyzing); KEGG: axy:AXYL_04686 hydantoinase/oxoprolinase family protein; PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal.


ensembl_gene_id: Psed_5505
symbol: Psed_5505
gene_biotype: protein_coding
description:
  Alpha-methylacyl-CoA racemase; KEGG: cai:Caci_5437 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.


ensembl_gene_id: Psed_5511
symbol: Psed_5511
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; KEGG: nfa:nfa20960 putative transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain.


ensembl_gene_id: Psed_5512
symbol: Psed_5512
gene_biotype: protein_coding
description:
  KEGG: bid:Bind_2090 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Psed_5513
symbol: Psed_5513
gene_biotype: protein_coding
description:
  PFAM: Negative transcriptional regulator; KEGG: tbi:Tbis_2719 FMN-binding negative transcriptional regulator.


ensembl_gene_id: Psed_5514
symbol: Psed_5514
gene_biotype: protein_coding
description:
  MOSC domain containing protein; PFAM: Molybdenum cofactor sulfurase, C-terminal; KEGG: kra:Krad_2352 MOSC domain containing protein.


ensembl_gene_id: Psed_5516
symbol: Psed_5516
gene_biotype: protein_coding
description:
  KEGG: fri:FraEuI1c_2008 ferric uptake regulator, Fur family; manually curated; PFAM: Ferric-uptake regulator; Belongs to the Fur family.


ensembl_gene_id: Psed_5531
symbol: Psed_5531
gene_biotype: protein_coding
description:
  Cell division protein FtsK/SpoIIIE; KEGG: ami:Amir_0921 DNA segregation ATPase FtsK/SpoIIIE-related protein; PFAM: Cell divisionFtsK/SpoIIIE; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_5535
symbol: Psed_5535
gene_biotype: protein_coding
description:
  UPF0234 protein yajQ; KEGG: amd:AMED_0579 hypothetical protein; HAMAP: Protein of unknown function DUF520; PFAM: Protein of unknown function DUF520; Belongs to the UPF0234 family.


ensembl_gene_id: Psed_5536
symbol: Psed_5536
gene_biotype: protein_coding
description:
  PFAM: Drug/metabolite transporter; KEGG: nda:Ndas_5358 protein of unknown function DUF6 transmembrane.


ensembl_gene_id: Psed_5541
symbol: Psed_5541
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; KEGG: bbe:BBR47_04660 transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain.


ensembl_gene_id: Psed_5542
symbol: Psed_5542
gene_biotype: protein_coding
description:
  Transcriptional regulator, putative ATPase, winged helix family; KEGG: ade:Adeh_3289 SARP family transcriptional regulator; PFAM: Bacterial transcriptional activator domain; Signal transduction response regulator, C-terminal; Tetratricopeptide TPR-4; SMART: Signal transduction response regulator, C-terminal.


ensembl_gene_id: Psed_5544
symbol: Psed_5544
gene_biotype: protein_coding
description:
  TIGRFAM: Conserved hypothetical protein CHP03086; Conserved hypothetical protein CHP03083, actinobacterial-type; KEGG: sro:Sros_7305 hypothetical protein.


ensembl_gene_id: Psed_5546
symbol: htpX
gene_biotype: protein_coding
description:
  Protease htpX; KEGG: sen:SACE_6884 protease HtpX-like protein; HAMAP: Peptidase M48, protease HtpX, putative; PFAM: Peptidase M48; Belongs to the peptidase M48B family.


ensembl_gene_id: Psed_5548
symbol: Psed_5548
gene_biotype: protein_coding
description:
  PFAM: Crotonase, core; KEGG: ami:Amir_6663 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: Psed_5549
symbol: Psed_5549
gene_biotype: protein_coding
description:
  TIGRFAM: 2-oxoacid:acceptor oxidoreductase, alpha subunit; KEGG: ami:Amir_6664 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal.


ensembl_gene_id: Psed_5550
symbol: Psed_5550
gene_biotype: protein_coding
description:
  KEGG: rha:RHA1_ro02389 2-oxoglutarate ferredoxin oxidoreductase subunit beta; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding.


ensembl_gene_id: Psed_5555
symbol: Psed_5555
gene_biotype: protein_coding
description:
  Trans-hexaprenyltranstransferase; KEGG: ami:Amir_6668 polyprenyl synthetase; PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: Psed_5556
symbol: nuoN
gene_biotype: protein_coding
description:
  NAD(P)H-quinone oxidoreductase subunit 2; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family.


ensembl_gene_id: Psed_5557
symbol: Psed_5557
gene_biotype: protein_coding
description:
  TIGRFAM: NADH-quinone oxidoreductase, chain M/4; KEGG: ami:Amir_6670 proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase.


ensembl_gene_id: Psed_5558
symbol: Psed_5558
gene_biotype: protein_coding
description:
  TIGRFAM: NADH-plastoquinone oxidoreductase, chain 5; KEGG: svi:Svir_03270 NADH dehydrogenase subunit L; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal.


ensembl_gene_id: Psed_5559
symbol: nuoK
gene_biotype: protein_coding
description:
  NAD(P)H-quinone oxidoreductase subunit 4L; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family.


ensembl_gene_id: Psed_5560
symbol: Psed_5560
gene_biotype: protein_coding
description:
  NADH-ubiquinone/plastoquinone oxidoreductase chain 6; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: Psed_5561
symbol: nuoI
gene_biotype: protein_coding
description:
  NAD(P)H-quinone oxidoreductase subunit I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: Psed_5562
symbol: nuoH
gene_biotype: protein_coding
description:
  NADH dehydrogenase (quinone); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.


ensembl_gene_id: Psed_5563
symbol: Psed_5563
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.


ensembl_gene_id: Psed_5564
symbol: Psed_5564
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, F subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.


ensembl_gene_id: Psed_5565
symbol: Psed_5565
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_6678 NADH dehydrogenase (ubiquinone) 24 kDa subunit; PFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit.


ensembl_gene_id: Psed_5566
symbol: nuoD
gene_biotype: protein_coding
description:
  NAD(P)H-quinone oxidoreductase subunit H; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.


ensembl_gene_id: Psed_5567
symbol: nuoC
gene_biotype: protein_coding
description:
  NAD(P)H-quinone oxidoreductase subunit J; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family.


ensembl_gene_id: Psed_5568
symbol: nuoB
gene_biotype: protein_coding
description:
  NAD(P)H-quinone oxidoreductase subunit K; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: Psed_5569
symbol: nuoA
gene_biotype: protein_coding
description:
  NAD(P)H-quinone oxidoreductase subunit 3; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family.


ensembl_gene_id: Psed_5570
symbol: Psed_5570
gene_biotype: protein_coding
description:
  Geranylgeranyl reductase; KEGG: sen:SACE_6903 electron transfer oxidoreductase; TIGRFAM: Geranylgeranyl reductase, plant/prokaryotic; PFAM: FAD dependent oxidoreductase.


ensembl_gene_id: Psed_5571
symbol: menG
gene_biotype: protein_coding
description:
  Ubiquinone/menaquinone biosynthesis methyltransferase ubiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2).


ensembl_gene_id: Psed_5577
symbol: Psed_5577
gene_biotype: protein_coding
description:
  TIGRFAM: Isochorismate synthase; KEGG: ami:Amir_6694 isochorismate synthase; PFAM: Chorismate binding, C-terminal.


ensembl_gene_id: Psed_5578
symbol: Psed_5578
gene_biotype: protein_coding
description:
  ATP-dependent transcriptional regulator, MalT-like, LuxR family; KEGG: msm:MSMEG_3290 regulatory protein; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal.


ensembl_gene_id: Psed_5579
symbol: Psed_5579
gene_biotype: protein_coding
description:
  KEGG: mav:MAV_2744 MOSC domain-containing protein; manually curated; PFAM: MOSC, N-terminal beta barrel; Molybdenum cofactor sulfurase, C-terminal.


ensembl_gene_id: Psed_5584
symbol: Psed_5584
gene_biotype: protein_coding
description:
  Nitric oxide dioxygenase; KEGG: amd:AMED_3893 phthalate 4,5-dioxygenase; PFAM: Molybdenum cofactor sulfurase, C-terminal; 3-alpha domain; Oxidoreductase, FAD-binding domain; Oxidoreductase FAD/NAD(P)-binding; Ferredoxin.


ensembl_gene_id: Psed_5585
symbol: Psed_5585
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: kfl:Kfla_1161 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Psed_5587
symbol: menD
gene_biotype: protein_coding
description:
  2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily.


ensembl_gene_id: Psed_5588
symbol: Psed_5588
gene_biotype: protein_coding
description:
  2,2-dialkylglycine decarboxylase (pyruvate); KEGG: ami:Amir_4825 aminotransferase class-III; PFAM: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Psed_5589
symbol: Psed_5589
gene_biotype: protein_coding
description:
  KEGG: sgr:SGR_985 putative ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_5590
symbol: Psed_5590
gene_biotype: protein_coding
description:
  HesB/YadR/YfhF-family protein; PFAM: FeS cluster biogenesis; KEGG: cwo:Cwoe_3919 HesB/YadR/YfhF-family protein.


ensembl_gene_id: Psed_5593
symbol: Psed_5593
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_3788 D-lactate dehydrogenase (cytochrome); PFAM: FAD linked oxidase, N-terminal; FAD-linked oxidase, C-terminal; Cysteine-rich domain.


ensembl_gene_id: Psed_5595
symbol: Psed_5595
gene_biotype: protein_coding
description:
  PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: fre:Franean1_4388 GCN5-related N-acetyltransferase.


ensembl_gene_id: Psed_5596
symbol: Psed_5596
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: msm:MSMEG_2406 transcriptional regulator, TetR family protein, putative.


ensembl_gene_id: Psed_5599
symbol: Psed_5599
gene_biotype: protein_coding
description:
  TIGRFAM: RNA helicase, ATP-dependent DEAH box, HrpB type; PFAM: RNA helicase, ATP-dependent, HrpB type, C-terminal; Helicase, C-terminal; Helicase-associated domain; KEGG: amd:AMED_1284 ATP-dependent helicase HrpB; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; Helicase-associated domain.


ensembl_gene_id: Psed_5602
symbol: menA
gene_biotype: protein_coding
description:
  1,4-dihydroxy-2-naphthoate octaprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily.


ensembl_gene_id: Psed_5604
symbol: Psed_5604
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_6709 DNA binding domain protein, excisionase family; TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: HTH transcriptional regulator, MerR.


ensembl_gene_id: Psed_5607
symbol: Psed_5607
gene_biotype: protein_coding
description:
  KEGG: svi:Svir_02970 cytochrome c-type biogenesis protein CcsB; TIGRFAM: Cytochrome c-type biogenesis protein CcsA; PFAM: Cytochrome c assembly protein.


ensembl_gene_id: Psed_5608
symbol: Psed_5608
gene_biotype: protein_coding
description:
  ResB family protein; PFAM: Cytochrome c biogenesis protein; KEGG: sen:SACE_6931 cytochrome c biogenesis membrane protein.


ensembl_gene_id: Psed_5609
symbol: Psed_5609
gene_biotype: protein_coding
description:
  PFAM: Cytochrome c assembly protein, transmembrane domain; KEGG: sen:SACE_6932 cytochrome c-type biogenesis protein.


ensembl_gene_id: Psed_5610
symbol: Psed_5610
gene_biotype: protein_coding
description:
  PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: sen:SACE_6933 thiol-disulfide isomerase/thioredoxin.


ensembl_gene_id: Psed_5611
symbol: Psed_5611
gene_biotype: protein_coding
description:
  KEGG: gbr:Gbro_1035 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1.


ensembl_gene_id: Psed_5612
symbol: hemL
gene_biotype: protein_coding
description:
  Glutamate-1-semialdehyde 2,1-aminomutase; PFAM: Aminotransferase class-III; TIGRFAM: Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase; HAMAP: Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase; KEGG: nfa:nfa51600 glutamate-1-semialdehyde aminotransferase.


ensembl_gene_id: Psed_5616
symbol: Psed_5616
gene_biotype: protein_coding
description:
  Porphobilinogen synthase; KEGG: ami:Amir_6727 delta-aminolevulinic acid dehydratase; PFAM: Tetrapyrrole biosynthesis, porphobilinogen synthase; Belongs to the ALAD family.


ensembl_gene_id: Psed_5617
symbol: Psed_5617
gene_biotype: protein_coding
description:
  Uroporphyrinogen-III C-methyltransferase., Uroporphyrinogen-III synthase; KEGG: ami:Amir_6728 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; PFAM: Tetrapyrrole methylase; Tetrapyrrole biosynthesis, uroporphyrinogen III synthase.


ensembl_gene_id: Psed_5618
symbol: hemC
gene_biotype: protein_coding
description:
  Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.


ensembl_gene_id: Psed_5619
symbol: hemA
gene_biotype: protein_coding
description:
  Glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).


ensembl_gene_id: Psed_5620
symbol: rex
gene_biotype: protein_coding
description:
  Redox-sensing transcriptional repressor rex; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.


ensembl_gene_id: Psed_5621
symbol: Psed_5621
gene_biotype: protein_coding
description:
  beta-Ig-H3/fasciclin; KEGG: amd:AMED_7496 fasciclin repeat-containing protein; PFAM: FAS1 domain; SMART: FAS1 domain.


ensembl_gene_id: Psed_5622
symbol: Psed_5622
gene_biotype: protein_coding
description:
  PFAM: Oxidoreductase, molybdopterin-binding domain; Moybdenum cofactor oxidoreductase, dimerisation; KEGG: ami:Amir_6733 oxidoreductase molybdopterin binding.


ensembl_gene_id: Psed_5625
symbol: Psed_5625
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_6736 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2.


ensembl_gene_id: Psed_5627
symbol: Psed_5627
gene_biotype: protein_coding
description:
  KEGG: svi:Svir_02790 HAD-superfamily subfamily IB hydrolase, TIGR01490; TIGRFAM: HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial; HAD-superfamily hydrolase, subfamily IB, PSPase-like; PFAM: Haloacid dehalogenase-like hydrolase.


ensembl_gene_id: Psed_5628
symbol: Psed_5628
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_6739 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase.


ensembl_gene_id: Psed_5631
symbol: Psed_5631
gene_biotype: protein_coding
description:
  KEGG: svi:Svir_02760 DNA-binding protein, excisionase family; TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: Prophage CP4-57 regulatory.


ensembl_gene_id: Psed_5632
symbol: proC
gene_biotype: protein_coding
description:
  Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.


ensembl_gene_id: Psed_5635
symbol: Psed_5635
gene_biotype: protein_coding
description:
  PFAM: Xylose isomerase, TIM barrel domain; KEGG: ami:Amir_6746 xylose isomerase domain protein TIM barrel.


ensembl_gene_id: Psed_5638
symbol: Psed_5638
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; KEGG: amd:AMED_0460 two-component system response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal.


ensembl_gene_id: Psed_5639
symbol: Psed_5639
gene_biotype: protein_coding
description:
  Histidine kinase; KEGG: sen:SACE_6966 putative two-component system sensor kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain.


ensembl_gene_id: Psed_5640
symbol: gpmA
gene_biotype: protein_coding
description:
  2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.


ensembl_gene_id: Psed_5641
symbol: Psed_5641
gene_biotype: protein_coding
description:
  Regulatory protein MarR; KEGG: svi:Svir_14940 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR.


ensembl_gene_id: Psed_5642
symbol: Psed_5642
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: gob:Gobs_0101 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Psed_5644
symbol: Psed_5644
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function DUF2596; KEGG: svi:Svir_02660 protein of unknown function (DUF2596).


ensembl_gene_id: Psed_5645
symbol: mshA
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine; Catalyzes the transfer of a N-acetyl-glucosamine moiety to 1D-myo-inositol 3-phosphate to produce 1D-myo-inositol 2-acetamido-2- deoxy-glucopyranoside 3-phosphate in the mycothiol biosynthesis pathway.


ensembl_gene_id: Psed_5651
symbol: Psed_5651
gene_biotype: protein_coding
description:
  KEGG: svi:Svir_34040 cold-shock DNA-binding protein family; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein.


ensembl_gene_id: Psed_5652
symbol: Psed_5652
gene_biotype: protein_coding
description:
  Long-chain-fatty-acid--CoA ligase; KEGG: amd:AMED_1463 fatty-acyl-CoA synthase; PFAM: AMP-dependent synthetase/ligase.


ensembl_gene_id: Psed_5653
symbol: Psed_5653
gene_biotype: protein_coding
description:
  TIGRFAM: Seryl-tRNA synthetase, class IIa; KEGG: sma:SAV_2294 seryl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Seryl-tRNA synthetase, class IIa, N-terminal.


ensembl_gene_id: Psed_5654
symbol: Psed_5654
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_3551 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; Belongs to the peptidase S8 family.


ensembl_gene_id: Psed_5655
symbol: Psed_5655
gene_biotype: protein_coding
description:
  Molybdate-transporting ATPase; PFAM: ABC transporter-like; Transport-associated OB, type 1; KEGG: sen:SACE_0573 ABC transporter, ATP-binding protein; SMART: ATPase, AAA+ type, core; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Psed_5656
symbol: Psed_5656
gene_biotype: protein_coding
description:
  NifC-like ABC-type porter; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: Psed_5657
symbol: Psed_5657
gene_biotype: protein_coding
description:
  KEGG: kra:Krad_4177 molybdenum ABC transporter, periplasmic molybdate-binding protein; TIGRFAM: Molybdenum ABC transporter, periplasmic binding protein; PFAM: Bacterial extracellular solute-binding, family 1.


ensembl_gene_id: Psed_5659
symbol: Psed_5659
gene_biotype: protein_coding
description:
  Manually curated; KEGG: fri:FraEuI1c_3837 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal.


ensembl_gene_id: Psed_5660
symbol: moaA
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.


ensembl_gene_id: Psed_5665
symbol: Psed_5665
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; KEGG: sro:Sros_2243 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal.


ensembl_gene_id: Psed_5666
symbol: Psed_5666
gene_biotype: protein_coding
description:
  Histidine kinase; KEGG: sro:Sros_2242 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; HAMP linker domain.


