# geneInfo

ensembl_gene_id: Psed_0001
symbol: dnaA
gene_biotype: protein_coding
description:
  Chromosomal replication initiator protein dnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.


ensembl_gene_id: Psed_0002
symbol: Psed_0002
gene_biotype: protein_coding
description:
  DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]


ensembl_gene_id: Psed_0003
symbol: recF
gene_biotype: protein_coding
description:
  DNA replication and repair protein recF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.


ensembl_gene_id: Psed_0004
symbol: Psed_0004
gene_biotype: protein_coding
description:
  UPF0232 protein; KEGG: sen:SACE_0006 hypothetical protein; HAMAP: Uncharacterised protein family UPF0232, actinobacteria; PFAM: Protein of unknown function DUF721/UPF0232; Belongs to the UPF0232 family.


ensembl_gene_id: Psed_0005
symbol: gyrB
gene_biotype: protein_coding
description:
  DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: Psed_0006
symbol: gyrA
gene_biotype: protein_coding
description:
  DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: Psed_0009
symbol: Psed_0009
gene_biotype: protein_coding
description:
  Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: fri:FraEuI1c_5809 integrase family protein.


ensembl_gene_id: Psed_0017
symbol: Psed_0017
gene_biotype: protein_coding
description:
  KEGG: cai:Caci_3872 IstB domain protein ATP-binding protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_0023
symbol: Psed_0023
gene_biotype: protein_coding
description:
  KEGG: kfl:Kfla_2179 transcriptional regulator, GntR family; PFAM: HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR.


ensembl_gene_id: Psed_0027
symbol: Psed_0027
gene_biotype: protein_coding
description:
  KEGG: tpr:Tpau_4273 IstB domain protein ATP-binding protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_0036
symbol: Psed_0036
gene_biotype: protein_coding
description:
  KEGG: stp:Strop_4139 RNA-directed DNA polymerase; PFAM: Reverse transcriptase; Group II intron, maturase-specific.


ensembl_gene_id: Psed_0038
symbol: Psed_0038
gene_biotype: protein_coding
description:
  KEGG: stp:Strop_2011 regulatory protein, ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR.


ensembl_gene_id: Psed_0039
symbol: Psed_0039
gene_biotype: protein_coding
description:
  TIGRFAM: ATPase, P-type, heavy metal translocating; KEGG: ami:Amir_4284 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase.


ensembl_gene_id: Psed_0040
symbol: Psed_0040
gene_biotype: protein_coding
description:
  KEGG: ttr:Tter_2338 MgtE intracellular region; PFAM: Magnesium transporter, MgtE intracellular domain; Cystathionine beta-synthase, core; SMART: Magnesium transporter, MgtE intracellular domain; Cystathionine beta-synthase, core.


ensembl_gene_id: Psed_0041
symbol: Psed_0041
gene_biotype: protein_coding
description:
  PFAM: Natural resistance-associated macrophage protein; KEGG: ttr:Tter_2339 natural resistance-associated macrophage protein.


ensembl_gene_id: Psed_0043
symbol: Psed_0043
gene_biotype: protein_coding
description:
  Domain of unknown function DUF1727; KEGG: amd:AMED_8638 UDP-N-acetylmuramyl tripeptide synthase; manually curated; PFAM: Domain of unknown function DUF1727; Mur ligase, central.


ensembl_gene_id: Psed_0044
symbol: Psed_0044
gene_biotype: protein_coding
description:
  PFAM: CobB/CobQ-like glutamine amidotransferase; KEGG: tpr:Tpau_4003 CobB/CobQ domain protein glutamine amidotransferase.


ensembl_gene_id: Psed_0051
symbol: Psed_0051
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_7688 LytR family transcriptional regulator; TIGRFAM: Cell envelope-related transcriptional attenuator; PFAM: Cell envelope-related transcriptional attenuator.


ensembl_gene_id: Psed_0052
symbol: Psed_0052
gene_biotype: protein_coding
description:
  Twin-arginine translocation protein, TatB subunit; KEGG: ami:Amir_0798 sec-independent translocase; manually curated; TIGRFAM: Twin-arginine translocation protein TatB.


ensembl_gene_id: Psed_0055
symbol: Psed_0055
gene_biotype: protein_coding
description:
  Non-ribosomal peptide synthetase domain protein; SMART: Polyketide synthase, phosphopantetheine-binding; TIGRFAM: Non-ribosomal peptide synthetase C-terminal; Amino acid adenylation; KEGG: req:REQ_05560 non-ribosomal peptide synthetase; PFAM: AMP-dependent synthetase/ligase; Bacterial transferase hexapeptide repeat.


ensembl_gene_id: Psed_0056
symbol: Psed_0056
gene_biotype: protein_coding
description:
  KEGG: rha:RHA1_ro01089 cell division protein, FtsW; TIGRFAM: Cell division protein FtsW; PFAM: Cell cycle protein; Belongs to the SEDS family.


ensembl_gene_id: Psed_0057
symbol: Psed_0057
gene_biotype: protein_coding
description:
  PFAM: Cytochrome c oxidase caa3-type, assembly factor CtaG-related; KEGG: amd:AMED_1208 hypothetical protein.


ensembl_gene_id: Psed_0059
symbol: Psed_0059
gene_biotype: protein_coding
description:
  KEGG: nml:Namu_2159 twin-arginine translocation protein, TatB subunit; TIGRFAM: Twin-arginine translocation protein TatB; PFAM: Bacterial sec-independent translocation protein MttA/Hcf106.


ensembl_gene_id: Psed_0062
symbol: Psed_0062
gene_biotype: protein_coding
description:
  PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533, N-terminal; KEGG: fri:FraEuI1c_1501 transposase IS116/IS110/IS902 family protein.


ensembl_gene_id: Psed_0065
symbol: Psed_0065
gene_biotype: protein_coding
description:
  PFAM: FAD linked oxidase, N-terminal; Berberine/berberine-like; KEGG: sgr:SGR_4241 putative FAD-dependent oxygenase.


ensembl_gene_id: Psed_0066
symbol: Psed_0066
gene_biotype: protein_coding
description:
  KEGG: nml:Namu_4693 winged helix family transcriptional regulator; PFAM: Bacterial transcriptional activator domain; Signal transduction response regulator, C-terminal; NB-ARC; SMART: Signal transduction response regulator, C-terminal; ATPase, AAA+ type, core.


ensembl_gene_id: Psed_0067
symbol: Psed_0067
gene_biotype: protein_coding
description:
  PFAM: Uncharacterised conserved protein UCP014873, membrane associated; KEGG: nfa:nfa32860 hypothetical protein.


ensembl_gene_id: Psed_0069
symbol: Psed_0069
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_3321 ArsR family transcriptional regulator; PFAM: Protein-tyrosine phosphatase, low molecular weight; HTH transcriptional regulator, ArsR; SMART: Protein-tyrosine phosphatase, low molecular weight; HTH transcriptional regulator, ArsR.


ensembl_gene_id: Psed_0070
symbol: Psed_0070
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: amd:AMED_3320 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Psed_0073
symbol: Psed_0073
gene_biotype: protein_coding
description:
  KEGG: rha:RHA1_ro10196 ferredoxin--NAD(+) reductase; PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase, FAD-binding domain; Ferredoxin.


ensembl_gene_id: Psed_0074
symbol: Psed_0074
gene_biotype: protein_coding
description:
  KEGG: rha:RHA1_ro10197 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; Belongs to the PdxA family.


ensembl_gene_id: Psed_0075
symbol: Psed_0075
gene_biotype: protein_coding
description:
  PFAM: Aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: rha:RHA1_ro10198 aromatic ring dioxygenase beta subunit.


ensembl_gene_id: Psed_0077
symbol: Psed_0077
gene_biotype: protein_coding
description:
  TIGRFAM: Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; KEGG: rha:RHA1_ro10200 IclR family transcriptional regulator; SMART: Transcription regulator IclR, N-terminal.


ensembl_gene_id: Psed_0079
symbol: Psed_0079
gene_biotype: protein_coding
description:
  ABC-type transporter, periplasmic subunit; PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: sen:SACE_6324 peptide ABC transporter peptide-binding protein,putative.


ensembl_gene_id: Psed_0080
symbol: Psed_0080
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: kfl:Kfla_5744 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Psed_0081
symbol: Psed_0081
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: scb:SCAB_81881 transporter integral membrane protein.


ensembl_gene_id: Psed_0082
symbol: Psed_0082
gene_biotype: protein_coding
description:
  Monosaccharide-transporting ATPase; PFAM: ABC transporter-like; KEGG: sro:Sros_5586 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_0084
symbol: Psed_0084
gene_biotype: protein_coding
description:
  Transcriptional regulator, AsnC family; KEGG: sco:SCO3361 transcription regulator AsnC; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type.


ensembl_gene_id: Psed_0085
symbol: Psed_0085
gene_biotype: protein_coding
description:
  CheB methylesterase; KEGG: amd:AMED_4131 chemotaxis-specific methylesterase CheB; PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase.


ensembl_gene_id: Psed_0089
symbol: Psed_0089
gene_biotype: protein_coding
description:
  SSS sodium solute transporter superfamily; KEGG: amd:AMED_1584 solute:Na+ symporter; TIGRFAM: Sodium/solute symporter, subgroup; PFAM: Sodium/solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: Psed_0091
symbol: Psed_0091
gene_biotype: protein_coding
description:
  KEGG: sro:Sros_4910 putative transcriptional regulator, MerR family; PFAM: HTH transcriptional regulator, MerR; PBS lyase HEAT-like repeat; SMART: HTH transcriptional regulator, MerR.


ensembl_gene_id: Psed_0093
symbol: Psed_0093
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mil:ML5_1284 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Psed_0095
symbol: Psed_0095
gene_biotype: protein_coding
description:
  KEGG: nda:Ndas_2135 putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2.


ensembl_gene_id: Psed_0097
symbol: Psed_0097
gene_biotype: protein_coding
description:
  PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: gob:Gobs_3191 bifunctional deaminase-reductase domain-containing protein.


ensembl_gene_id: Psed_0098
symbol: Psed_0098
gene_biotype: protein_coding
description:
  KEGG: sro:Sros_6337 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal.


ensembl_gene_id: Psed_0100
symbol: Psed_0100
gene_biotype: protein_coding
description:
  L-iditol 2-dehydrogenase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: rxy:Rxyl_2379 zinc-binding alcohol dehydrogenase; SMART: Polyketide synthase, enoylreductase.


ensembl_gene_id: Psed_0103
symbol: Psed_0103
gene_biotype: protein_coding
description:
  MT-A70 family protein; PFAM: MT-A70; KEGG: ace:Acel_2063 MT-A70 family protein; Belongs to the MT-A70-like family.


ensembl_gene_id: Psed_0109
symbol: Psed_0109
gene_biotype: protein_coding
description:
  Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.


ensembl_gene_id: Psed_0113
symbol: Psed_0113
gene_biotype: protein_coding
description:
  TIGRFAM: Anthranilate synthase, glutamine amidotransferase domain; KEGG: svi:Svir_00350 anthranilate synthase, component II; PFAM: Glutamine amidotransferase class-I, C-terminal.


ensembl_gene_id: Psed_0114
symbol: Psed_0114
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine-protein kinase-like domain; PASTA; KEGG: ami:Amir_0021 serine/threonine protein kinase with PASTA sensor(s); SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; PASTA.


ensembl_gene_id: Psed_0115
symbol: Psed_0115
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine-protein kinase-like domain; KEGG: ami:Amir_0022 serine/threonine protein kinase; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain.


ensembl_gene_id: Psed_0116
symbol: Psed_0116
gene_biotype: protein_coding
description:
  Peptidoglycan glycosyltransferase; KEGG: req:REQ_00250 penicillin-binding protein; PFAM: Penicillin-binding protein, transpeptidase.


ensembl_gene_id: Psed_0117
symbol: Psed_0117
gene_biotype: protein_coding
description:
  PFAM: Cell cycle protein; KEGG: nfa:nfa830 putative cell division protein; Belongs to the SEDS family.


ensembl_gene_id: Psed_0118
symbol: Psed_0118
gene_biotype: protein_coding
description:
  PFAM: Protein phosphatase 2C, N-terminal; KEGG: sen:SACE_0048 protein serine/threonine phosphatases; SMART: Protein phosphatase 2C-like.


ensembl_gene_id: Psed_0119
symbol: Psed_0119
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_0049 FHA domain-containing protein; PFAM: Forkhead-associated (FHA) domain; SMART: Forkhead-associated (FHA) domain.


ensembl_gene_id: Psed_0120
symbol: Psed_0120
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_0057 FHA domain-containing protein; PFAM: Forkhead-associated (FHA) domain; SMART: Forkhead-associated (FHA) domain.


ensembl_gene_id: Psed_0124
symbol: Psed_0124
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_6393 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal.


ensembl_gene_id: Psed_0125
symbol: Psed_0125
gene_biotype: protein_coding
description:
  KEGG: svi:Svir_24560 flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase; TIGRFAM: Luciferase-like, F420-dependent oxidoreductase, Rv2161c, predicted; PFAM: Luciferase-like, subgroup.


ensembl_gene_id: Psed_0126
symbol: Psed_0126
gene_biotype: protein_coding
description:
  PFAM: Methionine synthase, vitamin-B12 independent; KEGG: rxy:Rxyl_1586 methionine synthase, vitamin-B12 independent.


ensembl_gene_id: Psed_0128
symbol: Psed_0128
gene_biotype: protein_coding
description:
  Haloacid dehalogenase, type II; KEGG: gob:Gobs_4382 haloacid dehalogenase I; TIGRFAM: Haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2; PFAM: Haloacid dehalogenase-like hydrolase.


ensembl_gene_id: Psed_0131
symbol: Psed_0131
gene_biotype: protein_coding
description:
  KEGG: gob:Gobs_1750 alcohol dehydrogenase GroES domain-containing protein; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; SMART: Polyketide synthase, enoylreductase.


ensembl_gene_id: Psed_0136
symbol: Psed_0136
gene_biotype: protein_coding
description:
  Dihydrolipoyl dehydrogenase; KEGG: kra:Krad_4083 pyridine nucleotide-disulphide oxidoreductase dimerisation region; PFAM: Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; Pyridine nucleotide-disulphide oxidoreductase, dimerisation.


ensembl_gene_id: Psed_0139
symbol: Psed_0139
gene_biotype: protein_coding
description:
  Nuclear export factor GLE1; PFAM: GLE1, N-terminal, bacteria; KEGG: sen:SACE_0074 hypothetical protein.


ensembl_gene_id: Psed_0142
symbol: Psed_0142
gene_biotype: protein_coding
description:
  TIGRFAM: RecB family nuclease, TM0106, putative; KEGG: ami:Amir_0046 nuclease (RecB family)-like protein.


ensembl_gene_id: Psed_0143
symbol: Psed_0143
gene_biotype: protein_coding
description:
  TIGRFAM: Nucleotide sugar dehydrogenase; KEGG: sen:SACE_5565 UDP-glucose 6-dehydrogenase protein; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal.


ensembl_gene_id: Psed_0144
symbol: Psed_0144
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_2073 putative methylated-DNA--protein-cysteine S-methyltransferase; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding.


ensembl_gene_id: Psed_0145
symbol: Psed_0145
gene_biotype: protein_coding
description:
  YceI family protein; KEGG: sen:SACE_7200 hypothetical protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SMART: Lipid/polyisoprenoid-binding, YceI-like; Belongs to the UPF0312 family.


ensembl_gene_id: Psed_0146
symbol: Psed_0146
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_9128 MFS transporter, multidrug efflux transporter; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1; Collagen-binding surface protein Cna-like, B-type domain.


ensembl_gene_id: Psed_0147
symbol: Psed_0147
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_0305 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR.


ensembl_gene_id: Psed_0150
symbol: Psed_0150
gene_biotype: protein_coding
description:
  PFAM: DNA glycosylase/AP lyase, catalytic domain; DNA glycosylase/AP lyase, H2TH DNA-binding; KEGG: mpa:MAP0889 hypothetical protein; SMART: DNA glycosylase/AP lyase, catalytic domain; Belongs to the FPG family.


ensembl_gene_id: Psed_0151
symbol: Psed_0151
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_0115 sensor kinase, two-component system; PFAM: Signal transduction histidine kinase, internal region; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain.


ensembl_gene_id: Psed_0153
symbol: Psed_0153
gene_biotype: protein_coding
description:
  KEGG: mil:ML5_6160 two component transcriptional regulator, LytTR family; PFAM: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain; SMART: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain.


ensembl_gene_id: Psed_0155
symbol: Psed_0155
gene_biotype: protein_coding
description:
  PFAM: Sodium/solute symporter; KEGG: rop:ROP_51070 putative SSS family transporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: Psed_0156
symbol: Psed_0156
gene_biotype: protein_coding
description:
  PFAM: Sodium/solute symporter; KEGG: rha:RHA1_ro05043 sodium:solute symporter, SSF; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: Psed_0157
symbol: Psed_0157
gene_biotype: protein_coding
description:
  Rhodanese-like protein; KEGG: nml:Namu_0213 rhodanese domain-containing protein; PFAM: Rhodanese-like; SMART: Rhodanese-like.


ensembl_gene_id: Psed_0159
symbol: Psed_0159
gene_biotype: protein_coding
description:
  PFAM: FAD-binding 9, siderophore-interacting; SEC-C motif; KEGG: ami:Amir_0079 sec-C motif domain protein.


ensembl_gene_id: Psed_0160
symbol: Psed_0160
gene_biotype: protein_coding
description:
  PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: tcu:Tcur_0098 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Psed_0167
symbol: Psed_0167
gene_biotype: protein_coding
description:
  Phosphoglycerate mutase; KEGG: sen:SACE_0153 2,3-PDG dependent phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1; Belongs to the phosphoglycerate mutase family.


ensembl_gene_id: Psed_0171
symbol: Psed_0171
gene_biotype: protein_coding
description:
  Trypanothione synthase; KEGG: sen:SACE_0157 hypothetical protein; PFAM: Glutathionylspermidine synthase.


ensembl_gene_id: Psed_0173
symbol: Psed_0173
gene_biotype: protein_coding
description:
  KEGG: msm:MSMEG_6407 Cof-like hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: HAD superfamily hydrolase-like, type 3.


ensembl_gene_id: Psed_0174
symbol: Psed_0174
gene_biotype: protein_coding
description:
  Phosphoesterase PA-phosphatase related protein; KEGG: sen:SACE_0167 membrane-associated phospholipid phosphatase; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase.


ensembl_gene_id: Psed_0175
symbol: Psed_0175
gene_biotype: protein_coding
description:
  PFAM: UbiA prenyltransferase; KEGG: amd:AMED_0226 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Belongs to the UbiA prenyltransferase family.


ensembl_gene_id: Psed_0176
symbol: Psed_0176
gene_biotype: protein_coding
description:
  Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.


ensembl_gene_id: Psed_0177
symbol: Psed_0177
gene_biotype: protein_coding
description:
  TIGRFAM: dTDP-glucose 4,6-dehydratase; KEGG: svi:Svir_06090 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.


ensembl_gene_id: Psed_0185
symbol: Psed_0185
gene_biotype: protein_coding
description:
  TIGRFAM: UDP-galactopyranose mutase; KEGG: svi:Svir_01310 UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase, C-terminal; FAD dependent oxidoreductase.


ensembl_gene_id: Psed_0189
symbol: Psed_0189
gene_biotype: protein_coding
description:
  PFAM: Mycobacterial cell wall arabinan synthesis protein; KEGG: sen:SACE_5736 arabinosyl transferase.


ensembl_gene_id: Psed_0195
symbol: Psed_0195
gene_biotype: protein_coding
description:
  PFAM: FAD linked oxidase, N-terminal; D-arabinono-1,4-lactone oxidase; KEGG: sen:SACE_0195 FAD linked oxidoreductase.


ensembl_gene_id: Psed_0199
symbol: Psed_0199
gene_biotype: protein_coding
description:
  Sulfate-transporting ATPase; PFAM: ABC transporter-like; KEGG: mil:ML5_0344 abc transporter related protein; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_0202
symbol: Psed_0202
gene_biotype: protein_coding
description:
  KEGG: gob:Gobs_1678 ATP-dependent transcriptional regulator, MalT-like, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal.


ensembl_gene_id: Psed_0207
symbol: Psed_0207
gene_biotype: protein_coding
description:
  Teichoic-acid-transporting ATPase; PFAM: ABC transporter-like; KEGG: sen:SACE_0200 putative ABC transport system, ATP-binding protein; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_0210
symbol: Psed_0210
gene_biotype: protein_coding
description:
  NAD(P)H quinone oxidoreductase, PIG3 family; SMART: Polyketide synthase, enoylreductase; TIGRFAM: Quinone oxidoreductase putative, PIG3; KEGG: rop:ROP_39810 putative oxidoreductase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like.


ensembl_gene_id: Psed_0211
symbol: Psed_0211
gene_biotype: protein_coding
description:
  PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: ami:Amir_0140 GCN5-related N-acetyltransferase.


ensembl_gene_id: Psed_0212
symbol: Psed_0212
gene_biotype: protein_coding
description:
  PFAM: Uncharacterised protein family, zinc metallopeptidase putative; KEGG: amd:AMED_0245 metallopeptidase.


ensembl_gene_id: Psed_0213
symbol: Psed_0213
gene_biotype: protein_coding
description:
  Regulatory protein MarR; KEGG: ami:Amir_0144 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR.


ensembl_gene_id: Psed_0215
symbol: Psed_0215
gene_biotype: protein_coding
description:
  KEGG: azl:AZL_012780 flavin reductase; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding.


ensembl_gene_id: Psed_0216
symbol: Psed_0216
gene_biotype: protein_coding
description:
  TIGRFAM: 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component; KEGG: gtn:GTNG_3160 putative aromatic compound hydroxylase; PFAM: 4-hydroxyphenylacetate 3-hydroxylase.


ensembl_gene_id: Psed_0217
symbol: Psed_0217
gene_biotype: protein_coding
description:
  3-carboxyethylcatechol 2,3-dioxygenase; KEGG: amd:AMED_5706 2,3-dihydroxyphenylpropionate 1,2-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B.


ensembl_gene_id: Psed_0219
symbol: Psed_0219
gene_biotype: protein_coding
description:
  KEGG: cai:Caci_6492 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Psed_0222
symbol: Psed_0222
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: fri:FraEuI1c_3930 regulatory protein TetR.


ensembl_gene_id: Psed_0223
symbol: Psed_0223
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; KEGG: fri:FraEuI1c_3929 NAD-dependent epimerase/dehydratase.


ensembl_gene_id: Psed_0225
symbol: Psed_0225
gene_biotype: protein_coding
description:
  PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; KEGG: sen:SACE_2030 putative peptidyl-prolyl cis-trans isomerase.


ensembl_gene_id: Psed_0230
symbol: Psed_0230
gene_biotype: protein_coding
description:
  Choline dehydrogenase; KEGG: gob:Gobs_4747 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal.


ensembl_gene_id: Psed_0232
symbol: Psed_0232
gene_biotype: protein_coding
description:
  KEGG: bge:BC1002_2527 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, C-terminal; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, C-terminal; Signal transduction response regulator, receiver domain.


ensembl_gene_id: Psed_0234
symbol: pat
gene_biotype: protein_coding
description:
  Histidinol-phosphate aminotransferase; May catalyze the transamination reaction in phenylalanine biosynthesis; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Psed_0236
symbol: Psed_0236
gene_biotype: protein_coding
description:
  TIGRFAM: Acetoacetyl-CoA synthase; KEGG: msp:Mspyr1_32060 acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase/ligase.


ensembl_gene_id: Psed_0238
symbol: Psed_0238
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: msm:MSMEG_0878 transcriptional regulator.


ensembl_gene_id: Psed_0243
symbol: Psed_0243
gene_biotype: protein_coding
description:
  KEGG: cwo:Cwoe_3826 transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; Metal-dependent phosphohydrolase, HD subdomain; SMART: Transcription regulator LuxR, C-terminal.


ensembl_gene_id: Psed_0244
symbol: Psed_0244
gene_biotype: protein_coding
description:
  PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: mil:ML5_2012 extradiol ring-cleavage dioxygenase class III protein subunit B.


ensembl_gene_id: Psed_0246
symbol: Psed_0246
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: ABC transporter permease protein; KEGG: rer:RER_31070 iron-siderophore ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: Psed_0247
symbol: Psed_0247
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: ABC transporter permease protein; KEGG: sro:Sros_7986 ABC transporter, permease, Fe3+-siderophore transport system; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: Psed_0248
symbol: Psed_0248
gene_biotype: protein_coding
description:
  ABC-type transporter, periplasmic subunit; PFAM: Periplasmic binding protein; KEGG: msm:MSMEG_0020 periplasmic binding protein.


ensembl_gene_id: Psed_0250
symbol: Psed_0250
gene_biotype: protein_coding
description:
  Xenobiotic-transporting ATPase; KEGG: req:REQ_07550 abc transporter integral membrane subunit; PFAM: ABC transporter-like; ABC transporter, transmembrane domain.


ensembl_gene_id: Psed_0251
symbol: Psed_0251
gene_biotype: protein_coding
description:
  Xenobiotic-transporting ATPase; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: req:REQ_07560 abc transporter integral membrane subunit; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_0252
symbol: Psed_0252
gene_biotype: protein_coding
description:
  Amino acid adenylation domain protein; SMART: Polyketide synthase, phosphopantetheine-binding; Polyketide synthase, thioesterase domain; TIGRFAM: Amino acid adenylation; Non-ribosomal peptide synthase; KEGG: msm:MSMEG_0019 amino acid adenylation; PFAM: AMP-dependent synthetase/ligase; Phosphopantetheine-binding; Condensation domain; Thioesterase.


ensembl_gene_id: Psed_0254
symbol: Psed_0254
gene_biotype: protein_coding
description:
  Alkylhydroperoxidase like protein, AhpD family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.


ensembl_gene_id: Psed_0255
symbol: Psed_0255
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; Manually curated; TIGRFAM: RNA polymerase sigma-70, ECF type; RNA polymerase sigma-70; KEGG: rha:RHA1_ro03512 sigma factor, sigma 70 type, group 4; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2.


ensembl_gene_id: Psed_0256
symbol: Psed_0256
gene_biotype: protein_coding
description:
  KEGG: mkm:Mkms_5393 MOSC domain-containing protein; manually curated; PFAM: Molybdenum cofactor sulfurase, C-terminal; MOSC, N-terminal beta barrel.


ensembl_gene_id: Psed_0258
symbol: Psed_0258
gene_biotype: protein_coding
description:
  ABC-type transporter, periplasmic subunit; PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: vei:Veis_0939 extracellular solute-binding protein.


ensembl_gene_id: Psed_0260
symbol: Psed_0260
gene_biotype: protein_coding
description:
  Propanoyl-CoA C-acyltransferase; KEGG: bbr:BB1086 putative thiolase; PFAM: Thiolase, N-terminal; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Psed_0262
symbol: Psed_0262
gene_biotype: protein_coding
description:
  Formyl-CoA transferase; KEGG: reu:Reut_A1827 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.


ensembl_gene_id: Psed_0263
symbol: Psed_0263
gene_biotype: protein_coding
description:
  KEGG: rop:ROP_51360 putative IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal.


ensembl_gene_id: Psed_0264
symbol: Psed_0264
gene_biotype: protein_coding
description:
  PFAM: Xylose isomerase, TIM barrel domain; KEGG: nml:Namu_0793 xylose isomerase domain-containing protein.


ensembl_gene_id: Psed_0267
symbol: Psed_0267
gene_biotype: protein_coding
description:
  FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; TIGRFAM: Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A; KEGG: avn:Avin_31500 flavin-dependent oxidoreductase.


ensembl_gene_id: Psed_0269
symbol: Psed_0269
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_2974 isoquinoline 1-oxidoreductase, alpha subunit; PFAM: [2Fe-2S]-binding; Ferredoxin.


ensembl_gene_id: Psed_0278
symbol: Psed_0278
gene_biotype: protein_coding
description:
  Redoxin domain protein; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.


ensembl_gene_id: Psed_0283
symbol: Psed_0283
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: amd:AMED_3391 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Psed_0284
symbol: Psed_0284
gene_biotype: protein_coding
description:
  PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: mva:Mvan_0766 pyridoxamine 5'-phosphate oxidase-related, FMN-binding.


ensembl_gene_id: Psed_0285
symbol: Psed_0285
gene_biotype: protein_coding
description:
  SMART: Helix-turn-helix, AraC type, DNA binding domain; KEGG: amd:AMED_0484 AraC family transcriptional regulator.


ensembl_gene_id: Psed_0286
symbol: Psed_0286
gene_biotype: protein_coding
description:
  KEGG: kfl:Kfla_3032 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SMART: Polyketide synthase/Fatty acid synthase, KR.


ensembl_gene_id: Psed_0288
symbol: Psed_0288
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; KEGG: rdn:HMPREF0733_10992 alcohol dehydrogenase; SMART: Polyketide synthase, enoylreductase.


ensembl_gene_id: Psed_0290
symbol: Psed_0290
gene_biotype: protein_coding
description:
  KEGG: tfu:Tfu_1507 methylated-DNA-(protein)-cysteine S-methyltransferase; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; Ada DNA repair, metal-binding.


ensembl_gene_id: Psed_0291
symbol: Psed_0291
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_3367 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2.


ensembl_gene_id: Psed_0295
symbol: Psed_0295
gene_biotype: protein_coding
description:
  PFAM: Crotonase, core; KEGG: amd:AMED_5287 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: Psed_0299
symbol: Psed_0299
gene_biotype: protein_coding
description:
  Putative F420-dependent enzyme; KEGG: msm:MSMEG_3380 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; TIGRFAM: F420-binding domain, putative; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain.


ensembl_gene_id: Psed_0300
symbol: Psed_0300
gene_biotype: protein_coding
description:
  Pyridoxine 4-dehydrogenase; KEGG: dge:Dgeo_2171 aldo/keto reductase; PFAM: NADP-dependent oxidoreductase domain.


ensembl_gene_id: Psed_0302
symbol: Psed_0302
gene_biotype: protein_coding
description:
  HAD-superfamily hydrolase, phosphatase; KEGG: nar:Saro_0570 epoxide hydrolase domain-containing phosphatase; TIGRFAM: HAD-superfamily phosphatase, subfamily IA/Epoxide hydrolase, N-terminal; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase.


ensembl_gene_id: Psed_0303
symbol: Psed_0303
gene_biotype: protein_coding
description:
  KEGG: mau:Micau_5172 DNA polymerase LigD polymerase subunit; TIGRFAM: DNA polymerase LigD, polymerase domain; PFAM: DNA primase, small subunit.


ensembl_gene_id: Psed_0306
symbol: Psed_0306
gene_biotype: protein_coding
description:
  Acetylornithine transaminase; KEGG: sen:SACE_4673 hypothetical protein; PFAM: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Psed_0307
symbol: Psed_0307
gene_biotype: protein_coding
description:
  Cystathionine beta-lyase; KEGG: sen:SACE_3049 aminotransferase; PFAM: Aminotransferase, class I/classII.


ensembl_gene_id: Psed_0309
symbol: Psed_0309
gene_biotype: protein_coding
description:
  Xenobiotic-transporting ATPase; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: mil:ML5_1065 abc transporter transmembrane region; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_0310
symbol: Psed_0310
gene_biotype: protein_coding
description:
  Xenobiotic-transporting ATPase; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: mil:ML5_1066 abc transporter related protein; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_0311
symbol: Psed_0311
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: kfl:Kfla_3613 transcriptional regulator, TetR family.


ensembl_gene_id: Psed_0313
symbol: Psed_0313
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: kfl:Kfla_0703 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Psed_0314
symbol: Psed_0314
gene_biotype: protein_coding
description:
  TIGRFAM: Conserved hypothetical protein CHP03086; Conserved hypothetical protein CHP03083, actinobacterial-type; KEGG: kfl:Kfla_0717 hypothetical protein.


ensembl_gene_id: Psed_0316
symbol: Psed_0316
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; KEGG: amd:AMED_2410 two-component system response regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal.


ensembl_gene_id: Psed_0317
symbol: Psed_0317
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; KEGG: amd:AMED_2411 two-component system histidine kinase.


ensembl_gene_id: Psed_0321
symbol: Psed_0321
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; Tetracycline transcriptional regulator, TetR, C-terminal; KEGG: bcv:Bcav_3884 transcriptional regulator, TetR family.


ensembl_gene_id: Psed_0322
symbol: Psed_0322
gene_biotype: protein_coding
description:
  Polyamine-transporting ATPase; PFAM: ABC transporter-like; KEGG: aau:AAur_3041 putative ABC-type multidrug transport system, ATPase component; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_0323
symbol: Psed_0323
gene_biotype: protein_coding
description:
  PFAM: ABC-2 type transporter; KEGG: aau:AAur_3042 putative ABC-type multidrug transport system, permease component.


ensembl_gene_id: Psed_0324
symbol: Psed_0324
gene_biotype: protein_coding
description:
  PFAM: Nucleoside phosphorylase domain; KEGG: fal:FRAAL4002 putative purine-nucleoside phosphorylase.


ensembl_gene_id: Psed_0325
symbol: Psed_0325
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ami:Amir_1766 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Psed_0326
symbol: Psed_0326
gene_biotype: protein_coding
description:
  KEGG: tcu:Tcur_1808 cell envelope-related transcriptional attenuator; TIGRFAM: Cell envelope-related transcriptional attenuator; PFAM: Cell envelope-related transcriptional attenuator.


ensembl_gene_id: Psed_0327
symbol: ku
gene_biotype: protein_coding
description:
  Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.


ensembl_gene_id: Psed_0328
symbol: Psed_0328
gene_biotype: protein_coding
description:
  KEGG: cfl:Cfla_1903 DNA polymerase LigD, ligase domain protein; manually curated; PFAM: DNA ligase, ATP-dependent, central.


ensembl_gene_id: Psed_0333
symbol: Psed_0333
gene_biotype: protein_coding
description:
  Amidohydrolase; TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: ami:Amir_0169 amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation.


ensembl_gene_id: Psed_0335
symbol: tadA
gene_biotype: protein_coding
description:
  CMP/dCMP deaminase zinc-binding protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: Psed_0336
symbol: Psed_0336
gene_biotype: protein_coding
description:
  PFAM: NUDIX hydrolase domain; KEGG: fre:Franean1_5579 NUDIX hydrolase; Belongs to the Nudix hydrolase family.


ensembl_gene_id: Psed_0339
symbol: Psed_0339
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_0625 Bcr/CflA subfamily drug resistance transporter; TIGRFAM: Drug resistance transporter Bcr/CflA subfamily; PFAM: Major facilitator superfamily MFS-1.


ensembl_gene_id: Psed_0345
symbol: Psed_0345
gene_biotype: protein_coding
description:
  Ureidoglycolate lyase; KEGG: bpt:Bpet4196 fumarylacetoacetate hydrolase family protein; PFAM: Fumarylacetoacetase, C-terminal-like.


ensembl_gene_id: Psed_0346
symbol: Psed_0346
gene_biotype: protein_coding
description:
  GntR domain protein; KEGG: axy:AXYL_04513 GntR family regulatory protein 50; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR.


ensembl_gene_id: Psed_0348
symbol: Psed_0348
gene_biotype: protein_coding
description:
  DNA polymerase III, subunits gamma and tau; SMART: ATPase, AAA+ type, core; manually curated; KEGG: sen:SACE_0251 putative DNA polymerase III gamma subunit; TIGRFAM: DNA polymerase III, subunit gamma/ tau; PFAM: ATPase, AAA-type, core.


ensembl_gene_id: Psed_0349
symbol: Psed_0349
gene_biotype: protein_coding
description:
  ATPase, P-type (transporting), HAD superfamily, subfamily IC; TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: rer:RER_45380 cation-transporting ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase.


ensembl_gene_id: Psed_0351
symbol: Psed_0351
gene_biotype: protein_coding
description:
  PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: scb:SCAB_16931 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Psed_0352
symbol: Psed_0352
gene_biotype: protein_coding
description:
  Cell wall hydrolase/autolysin; KEGG: amd:AMED_8913 N-acetylmuramoyl-L-alanine amidase; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic.


ensembl_gene_id: Psed_0353
symbol: Psed_0353
gene_biotype: protein_coding
description:
  UPF0133 protein ybaB; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.


ensembl_gene_id: Psed_0354
symbol: recR
gene_biotype: protein_coding
description:
  Recombination protein recR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.


ensembl_gene_id: Psed_0357
symbol: Psed_0357
gene_biotype: protein_coding
description:
  KEGG: mil:ML5_0071 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3.


ensembl_gene_id: Psed_0359
symbol: leuA
gene_biotype: protein_coding
description:
  2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.


ensembl_gene_id: Psed_0362
symbol: Psed_0362
gene_biotype: protein_coding
description:
  KEGG: nml:Namu_0694 aspartate kinase; TIGRFAM: Aspartate kinase domain; Aspartate kinase, monofunctional class; PFAM: Aspartate/glutamate/uridylate kinase; Amino acid-binding ACT; Belongs to the aspartokinase family.


ensembl_gene_id: Psed_0363
symbol: asd
gene_biotype: protein_coding
description:
  Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.


ensembl_gene_id: Psed_0365
symbol: Psed_0365
gene_biotype: protein_coding
description:
  Carbonic anhydrase; KEGG: sen:SACE_0433 plant-type carbonic anhydrase; PFAM: Carbonic anhydrase; SMART: Carbonic anhydrase.


ensembl_gene_id: Psed_0368
symbol: Psed_0368
gene_biotype: protein_coding
description:
  KEGG: tkm:TK90_0559 arsenate reductase; TIGRFAM: Arsenate reductase; PFAM: Arsenate reductase-like; Belongs to the ArsC family.


ensembl_gene_id: Psed_0369
symbol: Psed_0369
gene_biotype: protein_coding
description:
  PFAM: GCN5-related N-acetyltransferase (GNAT) domain; Amino acid-binding ACT; KEGG: sma:SAV_7063 hypothetical protein.


ensembl_gene_id: Psed_0373
symbol: Psed_0373
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: mil:ML5_3711 regulatory protein TetR.


ensembl_gene_id: Psed_0375
symbol: Psed_0375
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sro:Sros_1492 putative transcriptional regulator, TetR family.


ensembl_gene_id: Psed_0376
symbol: Psed_0376
gene_biotype: protein_coding
description:
  Putative RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: mau:Micau_0584 sigma-70 family RNA polymerase; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2.


ensembl_gene_id: Psed_0378
symbol: Psed_0378
gene_biotype: protein_coding
description:
  PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: reu:Reut_A0240 bifunctional deaminase-reductase, C-terminal.


ensembl_gene_id: Psed_0384
symbol: Psed_0384
gene_biotype: protein_coding
description:
  Manually curated; TIGRFAM: Protein of unknown function DUF124; KEGG: azc:AZC_0415 hypothetical protein; PFAM: Protein of unknown function DUF124.


ensembl_gene_id: Psed_0385
symbol: Psed_0385
gene_biotype: protein_coding
description:
  Radical SAM domain protein; KEGG: gsu:GSU0248 BchE/P-methylase family protein; PFAM: Radical SAM; Cobalamin (vitamin B12)-binding; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: Psed_0386
symbol: Psed_0386
gene_biotype: protein_coding
description:
  ThiJ/PfpI domain-containing protein; PFAM: ThiJ/PfpI; KEGG: mmi:MMAR_0071 transcriptional regulatory protein.


ensembl_gene_id: Psed_0387
symbol: Psed_0387
gene_biotype: protein_coding
description:
  KEGG: mjl:Mjls_0741 AraC family transcriptional regulator; PFAM: ThiJ/PfpI; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain.


ensembl_gene_id: Psed_0388
symbol: Psed_0388
gene_biotype: protein_coding
description:
  Acetylcholinesterase; KEGG: fal:FRAAL0556 putative carboxylesterase; PFAM: Carboxylesterase, type B; Belongs to the type-B carboxylesterase/lipase family.


ensembl_gene_id: Psed_0391
symbol: Psed_0391
gene_biotype: protein_coding
description:
  Metallophosphoesterase; PFAM: Metallo-dependent phosphatase; KEGG: ami:Amir_0233 metallophosphoesterase.


ensembl_gene_id: Psed_0393
symbol: topA
gene_biotype: protein_coding
description:
  DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]


ensembl_gene_id: Psed_0397
symbol: hppA
gene_biotype: protein_coding
description:
  Pyrophosphate-energized proton pump; Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force.


ensembl_gene_id: Psed_0398
symbol: Psed_0398
gene_biotype: protein_coding
description:
  TIGRFAM: DEAD/DEAH-box helicase, putative; PFAM: Protein of unknown function DUF1998; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; KEGG: svi:Svir_35840 helicase family protein with metal-binding cysteine cluster; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal.


ensembl_gene_id: Psed_0399
symbol: Psed_0399
gene_biotype: protein_coding
description:
  TIGRFAM: Helicase/secretion neighbourhood TadE-like protein; KEGG: mab:MAB_0475 hypothetical protein.


ensembl_gene_id: Psed_0403
symbol: Psed_0403
gene_biotype: protein_coding
description:
  Helicase/secretion neighborhood ATPase; KEGG: nfa:nfa3590 hypothetical protein; TIGRFAM: Helicase/secretion neighbourhood ATPase; PFAM: Type II secretion system protein E.


ensembl_gene_id: Psed_0404
symbol: Psed_0404
gene_biotype: protein_coding
description:
  TIGRFAM: Conserved hypothetical protein CHP03815, CpaE-like; KEGG: ami:Amir_0275 hypothetical protein.


ensembl_gene_id: Psed_0405
symbol: Psed_0405
gene_biotype: protein_coding
description:
  Manually curated; TIGRFAM: HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial; HAD-superfamily hydrolase, subfamily IB, PSPase-like; KEGG: sen:SACE_0365 HAD family hydrolase; PFAM: Haloacid dehalogenase-like hydrolase.


ensembl_gene_id: Psed_0407
symbol: acsA
gene_biotype: protein_coding
description:
  Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.


ensembl_gene_id: Psed_0410
symbol: Psed_0410
gene_biotype: protein_coding
description:
  PFAM: Peptidase S1/S6, chymotrypsin/Hap; KEGG: fri:FraEuI1c_3893 peptidase S1 and S6 chymotrypsin/Hap.


ensembl_gene_id: Psed_0411
symbol: Psed_0411
gene_biotype: protein_coding
description:
  PFAM: ATPase, AAA-3; KEGG: fri:FraEuI1c_3894 ATPase associated with various cellular activities AAA_3.


ensembl_gene_id: Psed_0412
symbol: Psed_0412
gene_biotype: protein_coding
description:
  KEGG: pol:Bpro_3892 hypothetical protein; PFAM: Domain of unknown function DUF58; SMART: von Willebrand factor, type A.


ensembl_gene_id: Psed_0413
symbol: Psed_0413
gene_biotype: protein_coding
description:
  Von Willebrand factor type A; KEGG: azo:azo2860 hypothetical protein; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A.


ensembl_gene_id: Psed_0414
symbol: Psed_0414
gene_biotype: protein_coding
description:
  KEGG: fri:FraEuI1c_3897 von Willebrand factor type A; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A.


ensembl_gene_id: Psed_0415
symbol: Psed_0415
gene_biotype: protein_coding
description:
  PFAM: Peptide chain release factor class I/class II; KEGG: amd:AMED_9033 peptide chain release factor class I.


ensembl_gene_id: Psed_0416
symbol: nhaA
gene_biotype: protein_coding
description:
  Na(+)/H(+) antiporter nhaA; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.


ensembl_gene_id: Psed_0418
symbol: Psed_0418
gene_biotype: protein_coding
description:
  Soluble epoxide hydrolase; KEGG: ami:Amir_0259 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1.


ensembl_gene_id: Psed_0419
symbol: Psed_0419
gene_biotype: protein_coding
description:
  PFAM: Glycerophosphoryl diester phosphodiesterase; KEGG: svi:Svir_38180 glycerophosphoryl diester phosphodiesterase.


ensembl_gene_id: Psed_0420
symbol: purD
gene_biotype: protein_coding
description:
  Phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; TIGRFAM: Phosphoribosylglycinamide synthetase; HAMAP: Phosphoribosylglycinamide synthetase; KEGG: amd:AMED_9086 phosphoribosylamine--glycine ligase; Belongs to the GARS family.


ensembl_gene_id: Psed_0421
symbol: Psed_0421
gene_biotype: protein_coding
description:
  PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: nfa:nfa21520 putative transcriptional regulator; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Psed_0425
symbol: Psed_0425
gene_biotype: protein_coding
description:
  Threonine aldolase; KEGG: ami:Amir_6894 aromatic amino acid beta-eliminating lyase/threonine aldolase; PFAM: Aromatic amino acid beta-eliminating lyase/threonine aldolase.


ensembl_gene_id: Psed_0426
symbol: Psed_0426
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_6893 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-E type, actinobacteria; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2.


ensembl_gene_id: Psed_0428
symbol: Psed_0428
gene_biotype: protein_coding
description:
  TIGRFAM: Adenylosuccinate lyase; KEGG: sma:SAV_7077 adenylosuccinate lyase; PFAM: Lyase 1, N-terminal; Adenylosuccinate lyase C-terminal metazoa/fungi; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.


ensembl_gene_id: Psed_0429
symbol: purC
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; TIGRFAM: SAICAR synthetase; HAMAP: SAICAR synthetase; KEGG: sna:Snas_4833 phosphoribosylaminoimidazole-succinocarboxamide synthase.


ensembl_gene_id: Psed_0431
symbol: Psed_0431
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_7147 beta-lactamase-like protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like.


ensembl_gene_id: Psed_0432
symbol: purS
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase, purS; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assi [...]


ensembl_gene_id: Psed_0433
symbol: purQ
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase 1; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist i [...]


ensembl_gene_id: Psed_0434
symbol: Psed_0434
gene_biotype: protein_coding
description:
  KEGG: mil:ML5_2885 response regulator receiver modulated serine phosphatase; PFAM: Sporulation stage II, protein E C-terminal; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; Protein phosphatase 2C-like.


ensembl_gene_id: Psed_0435
symbol: Psed_0435
gene_biotype: protein_coding
description:
  Histidine kinase; KEGG: cwo:Cwoe_5360 multi-sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; CHASE3; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain.


ensembl_gene_id: Psed_0436
symbol: Psed_0436
gene_biotype: protein_coding
description:
  KEGG: tcu:Tcur_1124 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain.


ensembl_gene_id: Psed_0438
symbol: purL
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase 2; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist i [...]


ensembl_gene_id: Psed_0440
symbol: Psed_0440
gene_biotype: protein_coding
description:
  Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold-3; KEGG: ami:Amir_6871 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAC motif; PAS.


ensembl_gene_id: Psed_0441
symbol: purF
gene_biotype: protein_coding
description:
  Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.


ensembl_gene_id: Psed_0442
symbol: purM
gene_biotype: protein_coding
description:
  TIGRFAM: Phosphoribosylformylglycinamidine cyclo-ligase; KEGG: sen:SACE_7124 phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase-related protein, C-terminal; AIR synthase-related protein.


ensembl_gene_id: Psed_0444
symbol: Psed_0444
gene_biotype: protein_coding
description:
  KEGG: gob:Gobs_1106 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR.


ensembl_gene_id: Psed_0448
symbol: Psed_0448
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_6837 folate-binding protein YgfZ; TIGRFAM: Folate-binding, YgfZ; PFAM: Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel; Belongs to the GcvT family.


ensembl_gene_id: Psed_0449
symbol: Psed_0449
gene_biotype: protein_coding
description:
  Ferric uptake regulator, Fur family; PFAM: Ferric-uptake regulator; KEGG: ami:Amir_6836 ferric uptake regulator, Fur family; Belongs to the Fur family.


ensembl_gene_id: Psed_0452
symbol: Psed_0452
gene_biotype: protein_coding
description:
  UPF0678 fatty acid-binding protein-like protein; May play a role in the intracellular transport of hydrophobic ligands.


ensembl_gene_id: Psed_0455
symbol: Psed_0455
gene_biotype: protein_coding
description:
  Thiosulfate sulfurtransferase; PFAM: Rhodanese-like; KEGG: ami:Amir_6828 rhodanese domain protein; SMART: Rhodanese-like.


ensembl_gene_id: Psed_0459
symbol: Psed_0459
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_6823 putative two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, C-terminal.


ensembl_gene_id: Psed_0460
symbol: mshD
gene_biotype: protein_coding
description:
  Mycothiol biosynthesis acetyltransferase; Catalyzes the transfer of acetyl from acetyl-CoA to desacetylmycothiol (Cys-GlcN-Ins) to form mycothiol.


ensembl_gene_id: Psed_0461
symbol: Psed_0461
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, periplasmic phosphate-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.


ensembl_gene_id: Psed_0462
symbol: Psed_0462
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, inner membrane subunit PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: Psed_0463
symbol: Psed_0463
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_6819 phosphate ABC transporter, inner membrane subunit PstA; TIGRFAM: Phosphate transport system permease protein 2; PFAM: Binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Psed_0464
symbol: pstB
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, ATPase subunit; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.


ensembl_gene_id: Psed_0466
symbol: Psed_0466
gene_biotype: protein_coding
description:
  Protein of unknown function DUF1458; PFAM: Dodecin flavoprotein; KEGG: scb:SCAB_11251 hypothetical protein.


ensembl_gene_id: Psed_0468
symbol: Psed_0468
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_7090 LytR family transcriptional regulator; TIGRFAM: Cell envelope-related transcriptional attenuator; PFAM: Cell envelope-related transcriptional attenuator.


ensembl_gene_id: Psed_0469
symbol: Psed_0469
gene_biotype: protein_coding
description:
  TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: sen:SACE_7088 diguanylate cyclase; SMART: Diguanylate cyclase, predicted.


ensembl_gene_id: Psed_0470
symbol: Psed_0470
gene_biotype: protein_coding
description:
  TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.


ensembl_gene_id: Psed_0477
symbol: Psed_0477
gene_biotype: protein_coding
description:
  Manually curated; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; KEGG: sgr:SGR_2706 transcriptional regulator; SMART: HTH transcriptional regulator, GntR.


ensembl_gene_id: Psed_0482
symbol: Psed_0482
gene_biotype: protein_coding
description:
  Phosphoesterase PA-phosphatase related protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; KEGG: amd:AMED_0557 integral membrane protein.


ensembl_gene_id: Psed_0486
symbol: Psed_0486
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: fri:FraEuI1c_3546 hypothetical protein.


ensembl_gene_id: Psed_0488
symbol: Psed_0488
gene_biotype: protein_coding
description:
  KEGG: nda:Ndas_5034 cyclohexanone monooxygenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Psed_0490
symbol: Psed_0490
gene_biotype: protein_coding
description:
  Sigma54 specific transcriptional regulator, Fis family; PFAM: Helix-turn-helix, Fis-type; RNA polymerase sigma factor 54, interaction; KEGG: rha:RHA1_ro00452 transcriptional regulator.


ensembl_gene_id: Psed_0493
symbol: Psed_0493
gene_biotype: protein_coding
description:
  NADPH:quinone reductase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: cwo:Cwoe_1096 alcohol dehydrogenase zinc-binding domain protein; SMART: Polyketide synthase, enoylreductase.


ensembl_gene_id: Psed_0495
symbol: Psed_0495
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sro:Sros_3550 putative transcriptional regulator, TetR family.


ensembl_gene_id: Psed_0497
symbol: Psed_0497
gene_biotype: protein_coding
description:
  Regulatory protein ArsR; KEGG: rsa:RSal33209_1050 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR.


ensembl_gene_id: Psed_0498
symbol: Psed_0498
gene_biotype: protein_coding
description:
  PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533, N-terminal; KEGG: amd:AMED_1482 putative transposase.


ensembl_gene_id: Psed_0500
symbol: Psed_0500
gene_biotype: protein_coding
description:
  PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: nca:Noca_4120 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Psed_0502
symbol: Psed_0502
gene_biotype: protein_coding
description:
  PFAM: Biotin/lipoyl attachment; KEGG: fre:Franean1_0965 biotin/lipoyl attachment domain-containing protein.


ensembl_gene_id: Psed_0503
symbol: Psed_0503
gene_biotype: protein_coding
description:
  Enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core; KEGG: nca:Noca_4110 short chain enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: Psed_0507
symbol: Psed_0507
gene_biotype: protein_coding
description:
  Regulatory protein TetR; KEGG: gob:Gobs_3775 TetR family transcriptional regulator; manually curated; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal.


ensembl_gene_id: Psed_0508
symbol: Psed_0508
gene_biotype: protein_coding
description:
  Beta-ketoacyl-acyl-carrier-protein synthase II; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; KEGG: nca:Noca_4118 beta-ketoacyl synthase; SMART: Polyketide synthase, beta-ketoacyl synthase domain; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: Psed_0509
symbol: Psed_0509
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: nca:Noca_4117 extracellular ligand-binding receptor.


ensembl_gene_id: Psed_0511
symbol: Psed_0511
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: ABC transporter permease; KEGG: nca:Noca_4115 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Psed_0512
symbol: Psed_0512
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: ABC transporter permease; KEGG: nca:Noca_4114 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Psed_0513
symbol: Psed_0513
gene_biotype: protein_coding
description:
  Monosaccharide-transporting ATPase; PFAM: ABC transporter-like; KEGG: nca:Noca_4113 ABC transporter related; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_0514
symbol: Psed_0514
gene_biotype: protein_coding
description:
  KEGG: nca:Noca_4112 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_0515
symbol: Psed_0515
gene_biotype: protein_coding
description:
  Alpha-methylacyl-CoA racemase; Manually curated; KEGG: ami:Amir_5665 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.


ensembl_gene_id: Psed_0518
symbol: Psed_0518
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: nca:Noca_4111 regulatory protein, TetR.


ensembl_gene_id: Psed_0519
symbol: Psed_0519
gene_biotype: protein_coding
description:
  PFAM: Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: nca:Noca_4134 acyl-CoA dehydrogenase domain-containing protein.


ensembl_gene_id: Psed_0520
symbol: Psed_0520
gene_biotype: protein_coding
description:
  KEGG: nca:Noca_4133 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Psed_0521
symbol: Psed_0521
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: nca:Noca_4132 hypothetical protein.


ensembl_gene_id: Psed_0523
symbol: Psed_0523
gene_biotype: protein_coding
description:
  KEGG: nca:Noca_4130 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal.


ensembl_gene_id: Psed_0524
symbol: Psed_0524
gene_biotype: protein_coding
description:
  PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; KEGG: fri:FraEuI1c_5059 acyl-CoA dehydrogenase domain-containing protein.


ensembl_gene_id: Psed_0525
symbol: secD
gene_biotype: protein_coding
description:
  Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.


ensembl_gene_id: Psed_0528
symbol: Psed_0528
gene_biotype: protein_coding
description:
  PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: nca:Noca_4462 deaminase-reductase domain-containing protein.


ensembl_gene_id: Psed_0533
symbol: Psed_0533
gene_biotype: protein_coding
description:
  KEGG: stp:Strop_1675 regulatory protein, ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR.


ensembl_gene_id: Psed_0534
symbol: Psed_0534
gene_biotype: protein_coding
description:
  PFAM: Alanine racemase, N-terminal; KEGG: aau:AAur_0212 alanine racemase N-terminal domain-containing protein.


ensembl_gene_id: Psed_0535
symbol: Psed_0535
gene_biotype: protein_coding
description:
  Protein of unknown function DUF111; PFAM: Uncharacterised protein family UPF0272; KEGG: fri:FraEuI1c_0110 protein of unknown function DUF111.


ensembl_gene_id: Psed_0537
symbol: Psed_0537
gene_biotype: protein_coding
description:
  PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: apb:SAR116_0795 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Psed_0538
symbol: pyrD
gene_biotype: protein_coding
description:
  Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.


ensembl_gene_id: Psed_0540
symbol: Psed_0540
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) reductase; KEGG: rha:RHA1_ro01770 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Psed_0541
symbol: Psed_0541
gene_biotype: protein_coding
description:
  KEGG: aac:Aaci_0812 ethyl tert-butyl ether degradation EthD; TIGRFAM: Ethyl tert-butyl ether degradation EthD; PFAM: Ethyl tert-butyl ether degradation EthD.


ensembl_gene_id: Psed_0543
symbol: Psed_0543
gene_biotype: protein_coding
description:
  PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; KEGG: reu:Reut_B4781 dimethylmenaquinone methyltransferase.


ensembl_gene_id: Psed_0544
symbol: Psed_0544
gene_biotype: protein_coding
description:
  4-alpha-glucanotransferase; TIGRFAM: Glycoside hydrolase, family 77; KEGG: mgi:Mflv_0996 4-alpha-glucanotransferase; PFAM: Glycoside hydrolase, family 77.


ensembl_gene_id: Psed_0545
symbol: Psed_0545
gene_biotype: protein_coding
description:
  PFAM: Collagen-binding surface protein Cna-like, B-type domain; KEGG: lma:LmjF35.0540 proteophosphoglycan 5.


ensembl_gene_id: Psed_0548
symbol: Psed_0548
gene_biotype: protein_coding
description:
  Putative PAS/PAC sensor protein; TIGRFAM: PAS; PFAM: Sporulation stage II, protein E C-terminal; Signal transduction response regulator, receiver domain; PAS fold-3; GAF; ATPase-like, ATP-binding domain; Sulphate transporter/antisigma-factor antagonist STAS; KEGG: gob:Gobs_0116 multi-sensor signal transduction histidine kinase; SMART: Protein phosphatase 2C-like; Signal transduction response regulator, receiver domain; PAC motif; GAF.


ensembl_gene_id: Psed_0551
symbol: Psed_0551
gene_biotype: protein_coding
description:
  KEGG: gob:Gobs_2382 glutaryl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal.


ensembl_gene_id: Psed_0552
symbol: Psed_0552
gene_biotype: protein_coding
description:
  KEGG: cai:Caci_7507 protein of unknown function DUF1275; manually curated; PFAM: Protein of unknown function DUF1275.


ensembl_gene_id: Psed_0553
symbol: Psed_0553
gene_biotype: protein_coding
description:
  TIGRFAM: RNA helicase, ATP-dependent DEAH box, HrpA type; PFAM: Helicase-associated domain; Helicase, C-terminal; Domain of unknown function DUF1605; KEGG: svi:Svir_13420 ATP-dependent helicase HrpA; SMART: Helicase-associated domain; DEAD-like helicase, N-terminal; ATPase, AAA+ type, core; Helicase, C-terminal.


ensembl_gene_id: Psed_0558
symbol: Psed_0558
gene_biotype: protein_coding
description:
  PFAM: Major facilitator superfamily MFS-1; KEGG: mau:Micau_0410 major facilitator superfamily protein.


ensembl_gene_id: Psed_0562
symbol: Psed_0562
gene_biotype: protein_coding
description:
  Acetate--CoA ligase; KEGG: nml:Namu_2393 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase.


ensembl_gene_id: Psed_0565
symbol: Psed_0565
gene_biotype: protein_coding
description:
  PFAM: Heavy metal transport/detoxification protein; KEGG: gbr:Gbro_4238 heavy metal transport/detoxification protein.


ensembl_gene_id: Psed_0569
symbol: Psed_0569
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: amd:AMED_4675 TetR family transcriptional regulator.


ensembl_gene_id: Psed_0571
symbol: Psed_0571
gene_biotype: protein_coding
description:
  PFAM: Polysaccharide deacetylase; Glycosyl transferase, family 2; KEGG: sco:SCO4554 bi-functional transferase/deacetylase.


ensembl_gene_id: Psed_0574
symbol: Psed_0574
gene_biotype: protein_coding
description:
  PFAM: Polysaccharide deacetylase; Glycosyl transferase, family 2; KEGG: svi:Svir_26930 glycosyl transferase.


ensembl_gene_id: Psed_0577
symbol: Psed_0577
gene_biotype: protein_coding
description:
  Regulatory protein MarR; KEGG: sen:SACE_1607 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR.


ensembl_gene_id: Psed_0579
symbol: Psed_0579
gene_biotype: protein_coding
description:
  PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: nml:Namu_2350 TetR family transcriptional regulator.


ensembl_gene_id: Psed_0581
symbol: Psed_0581
gene_biotype: protein_coding
description:
  KEGG: tcu:Tcur_2880 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein.


ensembl_gene_id: Psed_0583
symbol: Psed_0583
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function DUF445, transmembrane; KEGG: ami:Amir_6776 protein of unknown function DUF445.


ensembl_gene_id: Psed_0584
symbol: Psed_0584
gene_biotype: protein_coding
description:
  SMART: ATPase, AAA+ type, core; TIGRFAM: Daunorubicin resistance ABC transporter ATP-binding subunit; KEGG: amd:AMED_5929 ATPase component of ABC-type multidrug transport system; PFAM: ABC transporter-like.


ensembl_gene_id: Psed_0586
symbol: crcB
gene_biotype: protein_coding
description:
  CrcB-like protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.


ensembl_gene_id: Psed_0588
symbol: Psed_0588
gene_biotype: protein_coding
description:
  Helix-turn-helix domain protein; KEGG: sen:SACE_6990 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3.


ensembl_gene_id: Psed_0591
symbol: Psed_0591
gene_biotype: protein_coding
description:
  PFAM: YbaK/aminoacyl-tRNA synthetase-associated domain; KEGG: ami:Amir_6768 YbaK/prolyl-tRNA synthetase associated region.


ensembl_gene_id: Psed_0592
symbol: lon
gene_biotype: protein_coding
description:
  Anti-sigma H sporulation factor, LonB; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.


ensembl_gene_id: Psed_0593
symbol: purU
gene_biotype: protein_coding
description:
  Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).


ensembl_gene_id: Psed_0594
symbol: Psed_0594
gene_biotype: protein_coding
description:
  PFAM: Major facilitator superfamily MFS-1; KEGG: dat:HRM2_33900 putative permease of the major facilitator superfamily.


ensembl_gene_id: Psed_0598
symbol: Psed_0598
gene_biotype: protein_coding
description:
  NADPH:quinone reductase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: ach:Achl_2099 alcohol dehydrogenase zinc-binding domain protein; SMART: Polyketide synthase, enoylreductase.


ensembl_gene_id: Psed_0599
symbol: Psed_0599
gene_biotype: protein_coding
description:
  Serine 3-dehydrogenase; KEGG: ami:Amir_6759 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Psed_0601
symbol: Psed_0601
gene_biotype: protein_coding
description:
  PFAM: Xanthine/uracil/vitamin C permease; KEGG: amd:AMED_8482 putative MFS transporter, xanthine/uracil permease.


ensembl_gene_id: Psed_0609
symbol: serC
gene_biotype: protein_coding
description:
  Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.


ensembl_gene_id: Psed_0610
symbol: Psed_0610
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_8451 citrate synthase; PFAM: Citrate synthase-like; Belongs to the citrate synthase family.


ensembl_gene_id: Psed_0611
symbol: pdxH
gene_biotype: protein_coding
description:
  Pyridoxine/pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).


ensembl_gene_id: Psed_0612
symbol: Psed_0612
gene_biotype: protein_coding
description:
  PFAM: Major facilitator superfamily MFS-1; KEGG: sen:SACE_0642 major facilitator superfamily multidrug resistance protein.


ensembl_gene_id: Psed_0613
symbol: Psed_0613
gene_biotype: protein_coding
description:
  TIGRFAM: Citrate synthase, type II; KEGG: svi:Svir_33600 citrate synthase; PFAM: Citrate synthase-like; Belongs to the citrate synthase family.


ensembl_gene_id: Psed_0614
symbol: Psed_0614
gene_biotype: protein_coding
description:
  KEGG: rer:RER_45790 deoxyribodipyrimidine photo-lyase; PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal.


ensembl_gene_id: Psed_0616
symbol: Psed_0616
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sgr:SGR_3980 TetR family transcriptional regulator.


ensembl_gene_id: Psed_0619
symbol: Psed_0619
gene_biotype: protein_coding
description:
  Monosaccharide-transporting ATPase; PFAM: ABC transporter-like; KEGG: amd:AMED_2105 ABC transport system ATP-binding protein; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_0620
symbol: Psed_0620
gene_biotype: protein_coding
description:
  GntR domain protein; KEGG: tfu:Tfu_1277 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR.


ensembl_gene_id: Psed_0621
symbol: Psed_0621
gene_biotype: protein_coding
description:
  KEGG: has:Halsa_0700 TRAP transporter, 4TM/12TM fusion protein; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit.


ensembl_gene_id: Psed_0625
symbol: Psed_0625
gene_biotype: protein_coding
description:
  TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: hje:HacjB3_10950 hypothetical protein.


ensembl_gene_id: Psed_0626
symbol: Psed_0626
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: amd:AMED_3868 hypothetical protein.


ensembl_gene_id: Psed_0630
symbol: Psed_0630
gene_biotype: protein_coding
description:
  Ferredoxin--NAD(+) reductase; KEGG: amd:AMED_4325 CDP-6-deoxy-delta-3,4-glucoseen reductase; PFAM: Oxidoreductase, FAD-binding domain; Ferredoxin; Oxidoreductase FAD/NAD(P)-binding.


ensembl_gene_id: Psed_0633
symbol: Psed_0633
gene_biotype: protein_coding
description:
  Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. Belongs to the chaperonin (HSP60) family.


ensembl_gene_id: Psed_0637
symbol: Psed_0637
gene_biotype: protein_coding
description:
  TIGRFAM: Putative translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase; Initiation factor 2B alpha/beta/delta; KEGG: cai:Caci_3517 translation initiation factor, aIF-2BI family; PFAM: Initiation factor 2B-related; Belongs to the eIF-2B alpha/beta/delta subunits family.


ensembl_gene_id: Psed_0640
symbol: Psed_0640
gene_biotype: protein_coding
description:
  Beta-lactamase domain protein; KEGG: svi:Svir_18790 Zn-dependent hydrolase, glyoxylase; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like.


ensembl_gene_id: Psed_0641
symbol: Psed_0641
gene_biotype: protein_coding
description:
  SMART: Polyketide synthase, enoylreductase; TIGRFAM: Formaldehyde dehydrogenase, mycothiol-dependent; KEGG: mil:ML5_5136 mycothiol-dependent formaldehyde dehydrogenase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like.


ensembl_gene_id: Psed_0643
symbol: Psed_0643
gene_biotype: protein_coding
description:
  Fumarylacetoacetase; KEGG: nda:Ndas_1870 fumarylacetoacetase; PFAM: Fumarylacetoacetase, C-terminal-like.


ensembl_gene_id: Psed_0647
symbol: Psed_0647
gene_biotype: protein_coding
description:
  KEGG: tcu:Tcur_1157 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR.


ensembl_gene_id: Psed_0648
symbol: Psed_0648
gene_biotype: protein_coding
description:
  TIGRFAM: Thiolase; KEGG: nca:Noca_4563 acetyl-CoA acetyltransferases; PFAM: Thiolase, C-terminal; Thiolase, N-terminal; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Psed_0649
symbol: Psed_0649
gene_biotype: protein_coding
description:
  3-hydroxybutyryl-CoA epimerase; KEGG: sma:SAV_1680 fatty acid oxidation complex alpha-subunit; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; Crotonase, core; 3-hydroxyacyl-CoA dehydrogenase, C-terminal.


ensembl_gene_id: Psed_0650
symbol: Psed_0650
gene_biotype: protein_coding
description:
  Carboxylate-amine ligase ybdK; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.


ensembl_gene_id: Psed_0651
symbol: Psed_0651
gene_biotype: protein_coding
description:
  ANTAR domain protein; KEGG: sen:SACE_1903 response regulator receiver/ANTAR domain-containing protein; PFAM: ANTAR; SMART: GAF.


ensembl_gene_id: Psed_0653
symbol: Psed_0653
gene_biotype: protein_coding
description:
  KEGG: gob:Gobs_0179 stress responsive alpha-beta barrel domain-containing protein; PFAM: Stress responsive alpha-beta barrel; SMART: Stress responsive alpha-beta barrel.


ensembl_gene_id: Psed_0654
symbol: Psed_0654
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_2133 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_0659
symbol: Psed_0659
gene_biotype: protein_coding
description:
  KEGG: sro:Sros_0898 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Psed_0661
symbol: Psed_0661
gene_biotype: protein_coding
description:
  KEGG: nfa:nfa11970 putative dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; SMART: Polyketide synthase, enoylreductase.


ensembl_gene_id: Psed_0664
symbol: Psed_0664
gene_biotype: protein_coding
description:
  PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: atu:Atu1400 phosphoglycerate dehydrogenase.


ensembl_gene_id: Psed_0666
symbol: Psed_0666
gene_biotype: protein_coding
description:
  Galactonate dehydratase; PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal; Mandelate racemase/muconate lactonizing enzyme, C-terminal; KEGG: mlo:mll7085 2-oxo-3-deoxygalactonate 6-phosphate aldolase and galactonate dehydratase; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal.


ensembl_gene_id: Psed_0667
symbol: Psed_0667
gene_biotype: protein_coding
description:
  PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_6318 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Psed_0669
symbol: Psed_0669
gene_biotype: protein_coding
description:
  Protein of unknown function DUF6 transmembrane; PFAM: Drug/metabolite transporter; KEGG: nml:Namu_5292 hypothetical protein.


ensembl_gene_id: Psed_0670
symbol: Psed_0670
gene_biotype: protein_coding
description:
  Protein of unknown function DUF6 transmembrane; PFAM: Drug/metabolite transporter; KEGG: rer:RER_47080 hypothetical protein.


ensembl_gene_id: Psed_0672
symbol: Psed_0672
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ret:RHE_CH02714 putative glyoxalase/bleomycin resistance-like protein.


ensembl_gene_id: Psed_0674
symbol: Psed_0674
gene_biotype: protein_coding
description:
  Diguanylate cyclase with GAF sensor; TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; GAF; KEGG: azo:azo2612 GAF/GGDEF-domain-containing protein; SMART: Diguanylate cyclase, predicted; GAF.


ensembl_gene_id: Psed_0675
symbol: Psed_0675
gene_biotype: protein_coding
description:
  Transcriptional regulator, HxlR family; PFAM: Helix-turn-helix, HxlR type; KEGG: nfa:nfa24980 putative transcriptional regulator.


ensembl_gene_id: Psed_0676
symbol: Psed_0676
gene_biotype: protein_coding
description:
  PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal; Acyl-CoA dehydrogenase, N-terminal; KEGG: pzu:PHZ_c3106 acyl-CoA dehydrogenase.


ensembl_gene_id: Psed_0680
symbol: Psed_0680
gene_biotype: protein_coding
description:
  Transcriptional regulator, HxlR family; PFAM: Helix-turn-helix, HxlR type; KEGG: rha:RHA1_ro01404 hypothetical protein.


ensembl_gene_id: Psed_0681
symbol: Psed_0681
gene_biotype: protein_coding
description:
  Carbonic anhydrase; KEGG: fal:FRAAL2803 hypothetical protein; PFAM: Carbonic anhydrase; SMART: Carbonic anhydrase.


ensembl_gene_id: Psed_0682
symbol: Psed_0682
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: ABC transporter permease; KEGG: nca:Noca_0101 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Psed_0684
symbol: Psed_0684
gene_biotype: protein_coding
description:
  Regulatory protein GntR HTH; KEGG: amd:AMED_0066 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal.


ensembl_gene_id: Psed_0685
symbol: Psed_0685
gene_biotype: protein_coding
description:
  Monosaccharide-transporting ATPase; PFAM: ABC transporter-like; KEGG: fri:FraEuI1c_5697 ABC transporter related protein; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_0689
symbol: Psed_0689
gene_biotype: protein_coding
description:
  PFAM: Major facilitator superfamily MFS-1; KEGG: msm:MSMEG_2810 major facilitator superfamily protein.


ensembl_gene_id: Psed_0694
symbol: Psed_0694
gene_biotype: protein_coding
description:
  PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: msm:MSMEG_1985 transcriptional regulator, LysR family protein; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Psed_0695
symbol: Psed_0695
gene_biotype: protein_coding
description:
  TIGRFAM: Tartrate dehydrogenase; KEGG: msm:MSMEG_1986 tartrate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase.


ensembl_gene_id: Psed_0697
symbol: Psed_0697
gene_biotype: protein_coding
description:
  KEGG: pmx:PERMA_1659 flavin reductase domain protein, FMN-binding; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding.


ensembl_gene_id: Psed_0699
symbol: Psed_0699
gene_biotype: protein_coding
description:
  KEGG: cai:Caci_4746 putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2.


ensembl_gene_id: Psed_0700
symbol: Psed_0700
gene_biotype: protein_coding
description:
  KEGG: rxy:Rxyl_2946 LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal.


ensembl_gene_id: Psed_0701
symbol: Psed_0701
gene_biotype: protein_coding
description:
  2,4-dichlorophenol 6-monooxygenase; Manually curated; KEGG: amd:AMED_5441 FAD-dependent oxidoreductase; PFAM: Monooxygenase, FAD-binding.


ensembl_gene_id: Psed_0702
symbol: Psed_0702
gene_biotype: protein_coding
description:
  Adenosine deaminase; Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism.


ensembl_gene_id: Psed_0703
symbol: Psed_0703
gene_biotype: protein_coding
description:
  PFAM: Membrane transport protein, MMPL type; KEGG: svi:Svir_37330 predicted RND superfamily drug exporter.


ensembl_gene_id: Psed_0704
symbol: Psed_0704
gene_biotype: protein_coding
description:
  KEGG: mil:ML5_0800 protein serine/threonine phosphatase; PFAM: Sporulation stage II, protein E C-terminal; GAF; SMART: Protein phosphatase 2C-like.


ensembl_gene_id: Psed_0708
symbol: Psed_0708
gene_biotype: protein_coding
description:
  CBS domain containing membrane protein; KEGG: sen:SACE_2402 signal-transduction protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core.


ensembl_gene_id: Psed_0709
symbol: Psed_0709
gene_biotype: protein_coding
description:
  PFAM: UspA; KEGG: sro:Sros_5439 universal stress protein UspA and related nucleotide-binding protein-like protein.


ensembl_gene_id: Psed_0715
symbol: Psed_0715
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_1907 GAF sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; GAF; SMART: GAF; ATPase-like, ATP-binding domain.


ensembl_gene_id: Psed_0718
symbol: Psed_0718
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_6098 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal.


ensembl_gene_id: Psed_0719
symbol: Psed_0719
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: fri:FraEuI1c_4013 regulatory protein TetR.


ensembl_gene_id: Psed_0720
symbol: Psed_0720
gene_biotype: protein_coding
description:
  TIGRFAM: Conserved hypothetical protein CHP03083, actinobacterial-type; KEGG: fri:FraEuI1c_4014 protein of unknown function DUF1503.


ensembl_gene_id: Psed_0723
symbol: Psed_0723
gene_biotype: protein_coding
description:
  PFAM: Inosine/uridine-preferring nucleoside hydrolase domain; KEGG: amd:AMED_1631 purine nucleosidase.


ensembl_gene_id: Psed_0726
symbol: Psed_0726
gene_biotype: protein_coding
description:
  Sulphatase-modifying factor protein; KEGG: svi:Svir_26230 hypothetical protein; manually curated; PFAM: Sulphatase-modifying factor.


ensembl_gene_id: Psed_0728
symbol: Psed_0728
gene_biotype: protein_coding
description:
  KEGG: gob:Gobs_3031 diacylglycerol kinase catalytic subunit; PFAM: Diacylglycerol kinase, catalytic domain; SMART: Diacylglycerol kinase, catalytic domain.


ensembl_gene_id: Psed_0729
symbol: Psed_0729
gene_biotype: protein_coding
description:
  KEGG: xau:Xaut_2680 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain.


ensembl_gene_id: Psed_0730
symbol: Psed_0730
gene_biotype: protein_coding
description:
  KEGG: pla:Plav_2689 BadM/Rrf2 family transcriptional regulator; TIGRFAM: Transcription regulator Rrf2; PFAM: Transcription regulator Rrf2.


ensembl_gene_id: Psed_0731
symbol: Psed_0731
gene_biotype: protein_coding
description:
  KEGG: xau:Xaut_2682 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1.


ensembl_gene_id: Psed_0732
symbol: Psed_0732
gene_biotype: protein_coding
description:
  LytTr DNA-binding region; KEGG: msm:MSMEG_3730 helix-turn-helix, fis-type, putative; PFAM: LytTr, DNA-binding domain; SMART: LytTr, DNA-binding domain.


ensembl_gene_id: Psed_0733
symbol: katG
gene_biotype: protein_coding
description:
  Catalase-peroxidase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.


ensembl_gene_id: Psed_0735
symbol: Psed_0735
gene_biotype: protein_coding
description:
  SMART: Pyrrolo-quinoline quinone beta-propeller repeat; TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; KEGG: sen:SACE_4449 quinoprotein ethanol dehydrogenase precursor; PFAM: PQQ-dependent enzyme, N-terminal; Pyrrolo-quinoline quinone repeat; PQQ-dependent enzyme, C-terminal.


ensembl_gene_id: Psed_0737
symbol: pqqB
gene_biotype: protein_coding
description:
  Coenzyme PQQ biosynthesis protein B; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family.


ensembl_gene_id: Psed_0738
symbol: pqqC
gene_biotype: protein_coding
description:
  Coenzyme PQQ biosynthesis protein C; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ.


ensembl_gene_id: Psed_0739
symbol: Psed_0739
gene_biotype: protein_coding
description:
  Coenzyme PQQ biosynthesis protein PqqD; TIGRFAM: Coenzyme PQQ synthesis D, bacteria; KEGG: msm:MSMEG_3722 bifunctional coenzyme PQQ synthesis protein C/D.


ensembl_gene_id: Psed_0740
symbol: pqqE
gene_biotype: protein_coding
description:
  Coenzyme PQQ biosynthesis protein E; Catalyzes the cross-linking of a glutamate residue and a tyrosine residue in the PqqA protein as part of the biosynthesis of pyrroloquinoline quinone (PQQ).


ensembl_gene_id: Psed_0743
symbol: Psed_0743
gene_biotype: protein_coding
description:
  NADH dehydrogenase (quinone); PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; KEGG: amd:AMED_5939 respiratory-chain NADH dehydrogenase-related protein; SMART: NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding.


ensembl_gene_id: Psed_0745
symbol: Psed_0745
gene_biotype: protein_coding
description:
  ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.


ensembl_gene_id: Psed_0747
symbol: Psed_0747
gene_biotype: protein_coding
description:
  KEGG: nml:Namu_0038 winged helix family two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal.


ensembl_gene_id: Psed_0748
symbol: Psed_0748
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_4352 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain.


ensembl_gene_id: Psed_0754
symbol: Psed_0754
gene_biotype: protein_coding
description:
  Regulatory protein ArsR; KEGG: scb:SCAB_11001 transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR.


ensembl_gene_id: Psed_0755
symbol: Psed_0755
gene_biotype: protein_coding
description:
  PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; KEGG: nml:Namu_2984 NADH ubiquinone oxidoreductase 20 kDa subunit.


ensembl_gene_id: Psed_0756
symbol: Psed_0756
gene_biotype: protein_coding
description:
  NADH dehydrogenase (quinone); KEGG: nml:Namu_2985 NADH/ubiquinone/plastoquinone (complex I); PFAM: NADH:ubiquinone/plastoquinone oxidoreductase.


ensembl_gene_id: Psed_0759
symbol: Psed_0759
gene_biotype: protein_coding
description:
  NADH dehydrogenase (quinone); KEGG: nml:Namu_2988 NADH/ubiquinone/plastoquinone (complex I); PFAM: NADH:ubiquinone/plastoquinone oxidoreductase.


ensembl_gene_id: Psed_0760
symbol: Psed_0760
gene_biotype: protein_coding
description:
  PFAM: NADH:ubiquinone oxidoreductase, 30kDa subunit; Nickel-dependent hydrogenase, large subunit; KEGG: nml:Namu_2989 NADH dehydrogenase (ubiquinone) 30 kDa subunit.


ensembl_gene_id: Psed_0763
symbol: Psed_0763
gene_biotype: protein_coding
description:
  TIGRFAM: Muconolactone delta-isomerase; KEGG: rer:RER_54210 muconolactone isomerase; PFAM: Muconolactone delta-isomerase.


ensembl_gene_id: Psed_0764
symbol: Psed_0764
gene_biotype: protein_coding
description:
  TIGRFAM: Catechol 1,2-dioxygenase, actinobacteria; KEGG: rer:RER_54230 catechol 1,2-dioxygenase; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal; Catechol dioxygenase, N-terminal.


ensembl_gene_id: Psed_0765
symbol: Psed_0765
gene_biotype: protein_coding
description:
  PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; KEGG: gob:Gobs_1295 mandelate racemase/muconate lactonizing protein; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal.


ensembl_gene_id: Psed_0766
symbol: Psed_0766
gene_biotype: protein_coding
description:
  Phenol 2-monooxygenase; KEGG: tcu:Tcur_0530 oxidoreductase FAD/NAD(P)-binding domain-containing protein; PFAM: Oxidoreductase, FAD-binding domain; Ferredoxin; Oxidoreductase FAD/NAD(P)-binding.


ensembl_gene_id: Psed_0768
symbol: Psed_0768
gene_biotype: protein_coding
description:
  KEGG: tcu:Tcur_0526 methane/phenol/toluene hydroxylase; PFAM: Methane/phenol/toluene hydroxylase; YHS.


ensembl_gene_id: Psed_0772
symbol: Psed_0772
gene_biotype: protein_coding
description:
  PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: msm:MSMEG_1895 HTH-type transcriptional regulator AlsR; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Psed_0774
symbol: Psed_0774
gene_biotype: protein_coding
description:
  KEGG: tcu:Tcur_3211 ECF subfamily RNA polymerase sigma-24 subunit; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2.


ensembl_gene_id: Psed_0777
symbol: Psed_0777
gene_biotype: protein_coding
description:
  SMART: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, subunit B; KEGG: scb:SCAB_6611 3-oxoadipate CoA-transferase subunit; PFAM: Coenzyme A transferase.


ensembl_gene_id: Psed_0778
symbol: Psed_0778
gene_biotype: protein_coding
description:
  SMART: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, subunit A; KEGG: scb:SCAB_6621 3-oxoadipate CoA-transferase subunit A; PFAM: Coenzyme A transferase.


ensembl_gene_id: Psed_0779
symbol: Psed_0779
gene_biotype: protein_coding
description:
  TIGRFAM: Thiolase; KEGG: nca:Noca_1013 acetyl-CoA acetyltransferases; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Psed_0780
symbol: Psed_0780
gene_biotype: protein_coding
description:
  PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: nca:Noca_1012 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Psed_0783
symbol: Psed_0783
gene_biotype: protein_coding
description:
  Metallophosphoesterase; PFAM: Metallo-dependent phosphatase; KEGG: msp:Mspyr1_42840 phosphohydrolase.


ensembl_gene_id: Psed_0785
symbol: Psed_0785
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; KEGG: sen:SACE_0761 putative two-component system response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal.


ensembl_gene_id: Psed_0786
symbol: Psed_0786
gene_biotype: protein_coding
description:
  Histidine kinase; KEGG: sen:SACE_0762 putative two-component system sensor kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain.


ensembl_gene_id: Psed_0787
symbol: Psed_0787
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_0765 serine protease, C-terminal; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF.


ensembl_gene_id: Psed_0788
symbol: Psed_0788
gene_biotype: protein_coding
description:
  TIGRFAM: Molybdenum cofactor synthesis; PFAM: Molybdopterin binding; KEGG: sen:SACE_0766 putative molybdenum cofactor biosynthesis protein; SMART: Molybdopterin binding.


ensembl_gene_id: Psed_0789
symbol: Psed_0789
gene_biotype: protein_coding
description:
  NADPH:quinone reductase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: mab:MAB_1874 putative oxidoreductase; SMART: Polyketide synthase, enoylreductase.


ensembl_gene_id: Psed_0792
symbol: Psed_0792
gene_biotype: protein_coding
description:
  PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: amd:AMED_1937 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Psed_0794
symbol: mscL
gene_biotype: protein_coding
description:
  Large conductance mechanosensitive channel protein; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.


ensembl_gene_id: Psed_0796
symbol: Psed_0796
gene_biotype: protein_coding
description:
  TIGRFAM: Regulatory protein, FmdB, putative; PFAM: Regulatory protein, FmdB, putative; KEGG: mil:ML5_0952 regulatory protein, fmdb family; SMART: Regulatory protein, FmdB, putative.


ensembl_gene_id: Psed_0797
symbol: Psed_0797
gene_biotype: protein_coding
description:
  5-formyltetrahydrofolate cyclo-ligase; KEGG: svi:Svir_32680 5,10-methenyltetrahydrofolate synthetase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase.


ensembl_gene_id: Psed_0798
symbol: Psed_0798
gene_biotype: protein_coding
description:
  UTP--glucose-1-phosphate uridylyltransferase; KEGG: ami:Amir_0628 nucleotidyl transferase; PFAM: Nucleotidyl transferase.


ensembl_gene_id: Psed_0799
symbol: Psed_0799
gene_biotype: protein_coding
description:
  Molybdenum cofactor synthesis domain protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.


ensembl_gene_id: Psed_0800
symbol: Psed_0800
gene_biotype: protein_coding
description:
  GCN5-related N-acetyltransferase; KEGG: amd:AMED_8309 ribosomal-protein-alanine N-acetyltransferase; manually curated; PFAM: GCN5-related N-acetyltransferase (GNAT) domain.


ensembl_gene_id: Psed_0802
symbol: Psed_0802
gene_biotype: protein_coding
description:
  KEGG: fra:Francci3_1684 resolvase-like protein; PFAM: Resolvase, N-terminal; Recombinase; SMART: Resolvase, N-terminal.


ensembl_gene_id: Psed_0806
symbol: Psed_0806
gene_biotype: protein_coding
description:
  PFAM: Biotin/lipoyl attachment; KEGG: tbi:Tbis_1751 biotin/lipoyl attachment domain-containing protein.


ensembl_gene_id: Psed_0807
symbol: Psed_0807
gene_biotype: protein_coding
description:
  KEGG: ttr:Tter_1968 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC, N-terminal; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain.


ensembl_gene_id: Psed_0808
symbol: Psed_0808
gene_biotype: protein_coding
description:
  PFAM: Antibiotic biosynthesis monooxygenase; KEGG: nca:Noca_1187 antibiotic biosynthesis monooxygenase.


ensembl_gene_id: Psed_0809
symbol: Psed_0809
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function DUF59; Ribosomal protein L22/L17; KEGG: svi:Svir_16180 predicted metal-sulfur cluster biosynthetic enzyme.


ensembl_gene_id: Psed_0810
symbol: Psed_0810
gene_biotype: protein_coding
description:
  Ferredoxin--NAD(+) reductase; KEGG: rxy:Rxyl_2822 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Psed_0812
symbol: Psed_0812
gene_biotype: protein_coding
description:
  PFAM: Methane/phenol/toluene hydroxylase; KEGG: fra:Francci3_0215 methane/phenol/toluene hydroxylase.


ensembl_gene_id: Psed_0813
symbol: Psed_0813
gene_biotype: protein_coding
description:
  PFAM: Monooxygenase component MmoB/DmpM; KEGG: bbt:BBta_1595 toluene-4-monooxygenase system protein D.


ensembl_gene_id: Psed_0815
symbol: Psed_0815
gene_biotype: protein_coding
description:
  PFAM: Methane/phenol/toluene hydroxylase; KEGG: fra:Francci3_0211 methane/phenol/toluene hydroxylase.


ensembl_gene_id: Psed_0820
symbol: Psed_0820
gene_biotype: protein_coding
description:
  KEGG: pmy:Pmen_2638 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC, N-terminal; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain.


ensembl_gene_id: Psed_0821
symbol: Psed_0821
gene_biotype: protein_coding
description:
  SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal; TIGRFAM: Muconate/chloromuconate cycloisomerase; KEGG: rer:RER_54220 muconate cycloisomerase; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal.


ensembl_gene_id: Psed_0825
symbol: Psed_0825
gene_biotype: protein_coding
description:
  KEGG: rha:RHA1_ro04796 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type.


ensembl_gene_id: Psed_0827
symbol: rsmI
gene_biotype: protein_coding
description:
  Ribosomal RNA small subunit methyltransferase I; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.


ensembl_gene_id: Psed_0829
symbol: Psed_0829
gene_biotype: protein_coding
description:
  TrkA-C domain protein; PFAM: Regulator of K+ conductance, C-terminal; KEGG: amd:AMED_6002 TrkA domain-containing protein.


ensembl_gene_id: Psed_0830
symbol: Psed_0830
gene_biotype: protein_coding
description:
  TIGRFAM: Chorismate mutase, periplasmic; PFAM: Chorismate mutase, type II; KEGG: sen:SACE_7067 chorismate mutase; SMART: Chorismate mutase.


ensembl_gene_id: Psed_0833
symbol: metG
gene_biotype: protein_coding
description:
  Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.


ensembl_gene_id: Psed_0834
symbol: Psed_0834
gene_biotype: protein_coding
description:
  Hydrolase, TatD family; KEGG: sen:SACE_0800 putative deoxyribonuclease; TIGRFAM: Deoxyribonuclease, TatD Mg-dependent, prokaryote; PFAM: Deoxyribonuclease, TatD-related.


ensembl_gene_id: Psed_0835
symbol: Psed_0835
gene_biotype: protein_coding
description:
  PFAM: Transglycosylase-like; G5; Domain of unknown function DUF348; KEGG: svi:Svir_32470 hypothetical protein.


ensembl_gene_id: Psed_0836
symbol: rsmA
gene_biotype: protein_coding
description:
  Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.


ensembl_gene_id: Psed_0837
symbol: Psed_0837
gene_biotype: protein_coding
description:
  PFAM: Transcription regulator PadR N-terminal-like; KEGG: art:Arth_3006 PadR family transcriptional regulator.


ensembl_gene_id: Psed_0838
symbol: Psed_0838
gene_biotype: protein_coding
description:
  KEGG: ach:Achl_2717 drug resistance transporter, EmrB/QacA subfamily; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1.


ensembl_gene_id: Psed_0839
symbol: ispE
gene_biotype: protein_coding
description:
  4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.


ensembl_gene_id: Psed_0840
symbol: Psed_0840
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_0650 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_0843
symbol: Psed_0843
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: fre:Franean1_2583 TetR family transcriptional regulator.


ensembl_gene_id: Psed_0844
symbol: Psed_0844
gene_biotype: protein_coding
description:
  SMART: ATPase, AAA+ type, core; TIGRFAM: Daunorubicin resistance ABC transporter ATP-binding subunit; KEGG: tcu:Tcur_1684 daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter-like.


ensembl_gene_id: Psed_0846
symbol: Psed_0846
gene_biotype: protein_coding
description:
  KEGG: cai:Caci_4666 transcriptional regulator, winged helix family; PFAM: Bacterial transcriptional activator domain; Signal transduction response regulator, C-terminal; Tetratricopeptide TPR-4; SMART: Signal transduction response regulator, C-terminal.


ensembl_gene_id: Psed_0847
symbol: Psed_0847
gene_biotype: protein_coding
description:
  Beta-Ala-His dipeptidase; KEGG: msp:Mspyr1_19610 acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase; PFAM: Peptidase M20; Peptidase M20, dimerisation.


ensembl_gene_id: Psed_0849
symbol: pth
gene_biotype: protein_coding
description:
  Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.


ensembl_gene_id: Psed_0850
symbol: rplY
gene_biotype: protein_coding
description:
  50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.


ensembl_gene_id: Psed_0866
symbol: Psed_0866
gene_biotype: protein_coding
description:
  Manually curated; PFAM: IstB-like ATP-binding protein; KEGG: tpr:Tpau_4273 IstB domain protein ATP-binding protein; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_0867
symbol: Psed_0867
gene_biotype: protein_coding
description:
  Integrase catalytic region; KEGG: rer:pREL1_0265 transposase; manually curated; PFAM: Integrase, catalytic core.


ensembl_gene_id: Psed_0873
symbol: Psed_0873
gene_biotype: protein_coding
description:
  Helix-turn-helix domain protein; KEGG: msp:Mspyr1_12070 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3.


ensembl_gene_id: Psed_0874
symbol: Psed_0874
gene_biotype: protein_coding
description:
  Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: mau:Micau_5363 integrase family protein; Belongs to the 'phage' integrase family.


ensembl_gene_id: Psed_0875
symbol: prs
gene_biotype: protein_coding
description:
  Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.


ensembl_gene_id: Psed_0876
symbol: glmU
gene_biotype: protein_coding
description:
  Bifunctional protein glmU; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain.


ensembl_gene_id: Psed_0877
symbol: Psed_0877
gene_biotype: protein_coding
description:
  ErfK/YbiS/YcfS/YnhG family protein; PFAM: YkuD domain; KEGG: sen:SACE_4786 putative secreted protein.


ensembl_gene_id: Psed_0878
symbol: Psed_0878
gene_biotype: protein_coding
description:
  Peroxiredoxin, OsmC subfamily; KEGG: ske:Sked_32410 putative regulator of disulfide bond formation; TIGRFAM: Peroxiredoxin, osmotically inducible protein C, subgroup; PFAM: Peroxiredoxin, OsmC-like protein.


ensembl_gene_id: Psed_0879
symbol: Psed_0879
gene_biotype: protein_coding
description:
  Stearoyl-CoA 9-desaturase; KEGG: svi:Svir_16070 delta-9 acyl-phospholipid desaturase; PFAM: Fatty acid desaturase, type 1.


ensembl_gene_id: Psed_0880
symbol: Psed_0880
gene_biotype: protein_coding
description:
  LmbE family protein; PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; KEGG: amd:AMED_0567 LmbE family protein.


ensembl_gene_id: Psed_0883
symbol: Psed_0883
gene_biotype: protein_coding
description:
  KEGG: fra:Francci3_4341 ABC transporter-like protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_0885
symbol: mfd
gene_biotype: protein_coding
description:
  Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.


ensembl_gene_id: Psed_0887
symbol: Psed_0887
gene_biotype: protein_coding
description:
  KEGG: svi:Svir_32280 MazG family protein; TIGRFAM: NTP pyrophosphohydrolase MazG, bacterial; PFAM: NTP pyrophosphohydrolase MazG, putative catalytic core.


ensembl_gene_id: Psed_0889
symbol: Psed_0889
gene_biotype: protein_coding
description:
  Tat-translocated protein; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family.


ensembl_gene_id: Psed_0895
symbol: Psed_0895
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_0670 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat.


ensembl_gene_id: Psed_0896
symbol: eno
gene_biotype: protein_coding
description:
  Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.


ensembl_gene_id: Psed_0899
symbol: Psed_0899
gene_biotype: protein_coding
description:
  PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; KEGG: mil:ML5_5311 acyl-CoA dehydrogenase domain-containing protein.


ensembl_gene_id: Psed_0902
symbol: Psed_0902
gene_biotype: protein_coding
description:
  NADH dehydrogenase (ubiquinone); KEGG: ami:Amir_0688 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Psed_0903
symbol: Psed_0903
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: sro:Sros_4162 coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein.


ensembl_gene_id: Psed_0904
symbol: Psed_0904
gene_biotype: protein_coding
description:
  NAD-dependent epimerase/dehydratase; KEGG: mav:MAV_2709 short chain dehydrogenase; manually curated; PFAM: NAD-dependent epimerase/dehydratase.


ensembl_gene_id: Psed_0905
symbol: Psed_0905
gene_biotype: protein_coding
description:
  PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: msm:MSMEG_6677 transcriptional regulator, LysR family protein; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Psed_0906
symbol: Psed_0906
gene_biotype: protein_coding
description:
  PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: sro:Sros_3264 deaminase-reductase domain-containing protein.


ensembl_gene_id: Psed_0910
symbol: Psed_0910
gene_biotype: protein_coding
description:
  KEGG: gbr:Gbro_2666 IstB domain-containing protein ATP-binding protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_0911
symbol: Psed_0911
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cai:Caci_4804 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Psed_0912
symbol: Psed_0912
gene_biotype: protein_coding
description:
  ANTAR domain protein; KEGG: amd:AMED_6526 two-component system response regulator; PFAM: ANTAR; GAF; SMART: GAF.


ensembl_gene_id: Psed_0915
symbol: Psed_0915
gene_biotype: protein_coding
description:
  KEGG: pla:Plav_1269 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain.


ensembl_gene_id: Psed_0917
symbol: Psed_0917
gene_biotype: protein_coding
description:
  KEGG: svi:Svir_02010 transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR.


ensembl_gene_id: Psed_0918
symbol: Psed_0918
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: amd:AMED_0761 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Psed_0920
symbol: cpdA
gene_biotype: protein_coding
description:
  Metallophosphoesterase; Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes.


ensembl_gene_id: Psed_0924
symbol: Psed_0924
gene_biotype: protein_coding
description:
  PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: aai:AARI_11220 putative GNAT family acetyltransferase.


ensembl_gene_id: Psed_0927
symbol: Psed_0927
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sma:SAV_1382 TetR family transcriptional regulator.


ensembl_gene_id: Psed_0929
symbol: Psed_0929
gene_biotype: protein_coding
description:
  KEGG: sma:SAV_1381 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal.


ensembl_gene_id: Psed_0932
symbol: Psed_0932
gene_biotype: protein_coding
description:
  TIGRFAM: Thiolase; KEGG: amd:AMED_8108 acetyl-CoA C-acetyltransferase; PFAM: Thiolase, C-terminal; Thiolase, N-terminal; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Psed_0933
symbol: Psed_0933
gene_biotype: protein_coding
description:
  PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: amd:AMED_7439 hypothetical protein.


ensembl_gene_id: Psed_0935
symbol: Psed_0935
gene_biotype: protein_coding
description:
  KEGG: sro:Sros_4397 putative sigma-70 factor, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2.


ensembl_gene_id: Psed_0936
symbol: Psed_0936
gene_biotype: protein_coding
description:
  KEGG: tpr:Tpau_0903 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2.


ensembl_gene_id: Psed_0937
symbol: Psed_0937
gene_biotype: protein_coding
description:
  WD40 repeat-containing protein; KEGG: cai:Caci_6918 transcriptional regulator, XRE family; PFAM: WD40 repeat, subgroup; SMART: WD40 repeat.


ensembl_gene_id: Psed_0938
symbol: Psed_0938
gene_biotype: protein_coding
description:
  TIGRFAM: Cystathionine beta-synthase; KEGG: sen:SACE_0899 cystathionine beta-synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Cystathionine beta-synthase, core.


ensembl_gene_id: Psed_0939
symbol: Psed_0939
gene_biotype: protein_coding
description:
  PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; KEGG: nml:Namu_4420 cystathionine gamma-synthase.


ensembl_gene_id: Psed_0941
symbol: Psed_0941
gene_biotype: protein_coding
description:
  KEGG: svi:Svir_31840 threonine dehydratase; TIGRFAM: Threonine dehydratase II; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Amino acid-binding ACT.


ensembl_gene_id: Psed_0942
symbol: greA
gene_biotype: protein_coding
description:
  Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.


ensembl_gene_id: Psed_0943
symbol: mca
gene_biotype: protein_coding
description:
  Mycothiol conjugate amidase Mca; A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl-inositol) S- conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics; Belongs to the MshB deacetylase family. Mca subfamily.


ensembl_gene_id: Psed_0948
symbol: Psed_0948
gene_biotype: protein_coding
description:
  Manually curated; TIGRFAM: HylII; KEGG: sen:SACE_0920 hemolysin III family channel protein; PFAM: Hly-III-related.


ensembl_gene_id: Psed_0949
symbol: Psed_0949
gene_biotype: protein_coding
description:
  Undecaprenyl pyrophosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.


ensembl_gene_id: Psed_0953
symbol: Psed_0953
gene_biotype: protein_coding
description:
  PhoH family protein; KEGG: sen:SACE_0915 PhoH-like phosphate starvation-induced protein; PFAM: PhoH-like protein; SMART: Nucleotide binding protein, PINc.


ensembl_gene_id: Psed_0954
symbol: Psed_0954
gene_biotype: protein_coding
description:
  TIGRFAM: IMP dehydrogenase-related 1; KEGG: amd:AMED_8071 IMP dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; Cystathionine beta-synthase, core.


ensembl_gene_id: Psed_0955
symbol: Psed_0955
gene_biotype: protein_coding
description:
  PFAM: Ketopantoate reductase ApbA/PanE, N-terminal; Ketopantoate reductase ApbA/PanE, C-terminal; KEGG: fre:Franean1_2019 ketopantoate reductase ApbA/PanE.


ensembl_gene_id: Psed_0956
symbol: lig
gene_biotype: protein_coding
description:
  DNA ligase; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.


ensembl_gene_id: Psed_0957
symbol: Psed_0957
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_5145 diguanylate cyclase/phosphodiesterase; PFAM: Diguanylate phosphodiesterase, EAL domain; SMART: Diguanylate phosphodiesterase, EAL domain.


ensembl_gene_id: Psed_0958
symbol: fumC
gene_biotype: protein_coding
description:
  Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.


ensembl_gene_id: Psed_0959
symbol: Psed_0959
gene_biotype: protein_coding
description:
  ErfK/YbiS/YcfS/YnhG family protein; PFAM: YkuD domain; KEGG: amd:AMED_8939 putative secreted protein.


ensembl_gene_id: Psed_0960
symbol: Psed_0960
gene_biotype: protein_coding
description:
  Fructose-1,6-bisphosphatase, class II; TIGRFAM: Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase; KEGG: ami:Amir_0724 fructose 1,6-bisphosphatase II; PFAM: Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase.


ensembl_gene_id: Psed_0962
symbol: xseB
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease 7 small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.


ensembl_gene_id: Psed_0963
symbol: xseA
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease 7 large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.


ensembl_gene_id: Psed_0965
symbol: ispH
gene_biotype: protein_coding
description:
  4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.


ensembl_gene_id: Psed_0968
symbol: Psed_0968
gene_biotype: protein_coding
description:
  KEGG: svi:Svir_31430 O-6-methylguanine DNA methyltransferase; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding.


ensembl_gene_id: Psed_0969
symbol: Psed_0969
gene_biotype: protein_coding
description:
  DNA repair protein and transcriptional regulator, AraC family; KEGG: svi:Svir_31420 DNA-3-methyladenine glycosylase II/DNA-O6-methylguanine--protein-cysteine S-methyltransferase/transcriptional regulator Ada; PFAM: Ada DNA repair, metal-binding; HTH transcriptional regulator, AraC; AlkA, N-terminal; HhH-GPD domain; SMART: Helix-turn-helix, AraC type, DNA binding domain; HhH-GPD domain.


ensembl_gene_id: Psed_0971
symbol: ychF
gene_biotype: protein_coding
description:
  GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.


ensembl_gene_id: Psed_0973
symbol: Psed_0973
gene_biotype: protein_coding
description:
  KEGG: cwo:Cwoe_0574 peptidase S15; TIGRFAM: CocE/NonD hydrolase; SMART: Peptidase S15/CocE/NonD, C-terminal.


ensembl_gene_id: Psed_0976
symbol: Psed_0976
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: amd:AMED_3336 TetR family transcriptional regulator.


ensembl_gene_id: Psed_0983
symbol: Psed_0983
gene_biotype: protein_coding
description:
  Regulatory protein ArsR; KEGG: sro:Sros_8897 putative transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR.


ensembl_gene_id: Psed_0984
symbol: Psed_0984
gene_biotype: protein_coding
description:
  PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: saq:Sare_1540 activator of HSP90 ATPase 1 family protein.


ensembl_gene_id: Psed_0986
symbol: Psed_0986
gene_biotype: protein_coding
description:
  Phospho-2-dehydro-3-deoxyheptonate aldolase; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP).


ensembl_gene_id: Psed_0988
symbol: Psed_0988
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: msm:MSMEG_6743 lactoylglutathione lyase.


ensembl_gene_id: Psed_0989
symbol: Psed_0989
gene_biotype: protein_coding
description:
  PFAM: Transcriptional coactivator/pterin dehydratase; KEGG: rop:ROP_59910 pterin-4-alpha-carbinolamine dehydratase.


ensembl_gene_id: Psed_0991
symbol: Psed_0991
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_0751 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_0994
symbol: Psed_0994
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_0753 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal.


ensembl_gene_id: Psed_0995
symbol: Psed_0995
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_0754 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain.


ensembl_gene_id: Psed_0999
symbol: Psed_0999
gene_biotype: protein_coding
description:
  TIGRFAM: GTP-binding protein TypA; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; KEGG: amd:AMED_8030 GTP-binding protein TypA; SMART: Translation elongation factor EFG/EF2, C-terminal.


ensembl_gene_id: Psed_1000
symbol: Psed_1000
gene_biotype: protein_coding
description:
  ABC-type transporter, periplasmic subunit; PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: ami:Amir_0760 extracellular solute-binding protein family 5.


ensembl_gene_id: Psed_1001
symbol: Psed_1001
gene_biotype: protein_coding
description:
  ABC-type transporter, periplasmic subunit; PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: ols:Olsu_1266 extracellular solute-binding protein family 5.


ensembl_gene_id: Psed_1002
symbol: Psed_1002
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: sti:Sthe_2953 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Psed_1003
symbol: Psed_1003
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: gyc:GYMC61_1354 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Psed_1004
symbol: Psed_1004
gene_biotype: protein_coding
description:
  SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: sro:Sros_1953 glutathione import ATP-binding protein GsiA; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Psed_1005
symbol: mshB
gene_biotype: protein_coding
description:
  1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D- glucopyranoside deacetylase; Catalyzes the deacetylation of 1D-myo-inositol 2-acetamido-2- deoxy-alpha-D-glucopyranoside (GlcNAc-Ins) in the mycothiol biosynthesis pathway.


ensembl_gene_id: Psed_1008
symbol: Psed_1008
gene_biotype: protein_coding
description:
  PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: amd:AMED_1024 GCN5-related N-acetyltransferase.


ensembl_gene_id: Psed_1009
symbol: Psed_1009
gene_biotype: protein_coding
description:
  4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.


ensembl_gene_id: Psed_1010
symbol: Psed_1010
gene_biotype: protein_coding
description:
  TIGRFAM: Succinyldiaminopimelate transaminase, actinobacteria; KEGG: amd:AMED_1027 aminotransferase; PFAM: Aminotransferase, class I/classII.


ensembl_gene_id: Psed_1013
symbol: dapD
gene_biotype: protein_coding
description:
  2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA.


ensembl_gene_id: Psed_1014
symbol: Psed_1014
gene_biotype: protein_coding
description:
  TIGRFAM: Succinyl-diaminopimelate desuccinylase; KEGG: nml:Namu_4301 succinyl-diaminopimelate desuccinylase; PFAM: Peptidase M20; Peptidase M20, dimerisation.


ensembl_gene_id: Psed_1015
symbol: Psed_1015
gene_biotype: protein_coding
description:
  Conserved hypothetical protein CHP00730; KEGG: sen:SACE_1020 lysine decarboxylase family protein; TIGRFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; PFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; Belongs to the LOG family.


ensembl_gene_id: Psed_1016
symbol: Psed_1016
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_1021 hypothetical protein; TIGRFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; PFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG.


ensembl_gene_id: Psed_1017
symbol: Psed_1017
gene_biotype: protein_coding
description:
  Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.


ensembl_gene_id: Psed_1018
symbol: Psed_1018
gene_biotype: protein_coding
description:
  PFAM: Glycosyl transferase, family 2; KEGG: svi:Svir_06330 putative glucosyl-3-phosphoglycerate synthase.


ensembl_gene_id: Psed_1021
symbol: Psed_1021
gene_biotype: protein_coding
description:
  TIGRFAM: DNA-3-methyladenine glycosylase I; KEGG: sen:SACE_1027 DNA-3-methyladenine glycosylase I; PFAM: Methyladenine glycosylase.


ensembl_gene_id: Psed_1025
symbol: Psed_1025
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_0793 glycogen synthase; TIGRFAM: Glycogen synthase, corynebacterial; PFAM: Glycosyl transferase, group 1.


ensembl_gene_id: Psed_1026
symbol: glgC
gene_biotype: protein_coding
description:
  Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.


ensembl_gene_id: Psed_1028
symbol: Psed_1028
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_1067 RNA polymerase sigma-70 factor, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2.


ensembl_gene_id: Psed_1030
symbol: Psed_1030
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_1034 possinble serine protease; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF.


ensembl_gene_id: Psed_1031
symbol: tatB
gene_biotype: protein_coding
description:
  Sec-independent protein translocase protein tatB-like protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.


ensembl_gene_id: Psed_1034
symbol: Psed_1034
gene_biotype: protein_coding
description:
  Glyoxylate reductase (NADP(+)); KEGG: sen:SACE_3772 putative D-isomer specific 2-hydroxyacid dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain.


ensembl_gene_id: Psed_1038
symbol: Psed_1038
gene_biotype: protein_coding
description:
  KEGG: nda:Ndas_4755 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal.


ensembl_gene_id: Psed_1040
symbol: Psed_1040
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_3766 4-aminobutyrate transaminase; PFAM: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Psed_1041
symbol: Psed_1041
gene_biotype: protein_coding
description:
  ATPase-like, ParA/MinD; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.


ensembl_gene_id: Psed_1042
symbol: Psed_1042
gene_biotype: protein_coding
description:
  Regulatory protein MarR; Manually curated; PFAM: HTH transcriptional regulator, MarR; KEGG: ami:Amir_0800 transcriptional regulator, MarR family; SMART: HTH transcriptional regulator, MarR.


ensembl_gene_id: Psed_1044
symbol: Psed_1044
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_0802 MgtE intracellular region; PFAM: Magnesium transporter, MgtE intracellular domain; PRC-barrel; Cystathionine beta-synthase, core; SMART: Magnesium transporter, MgtE intracellular domain.


ensembl_gene_id: Psed_1045
symbol: Psed_1045
gene_biotype: protein_coding
description:
  KEGG: mau:Micau_0670 phenazine biosynthesis protein PhzF family; TIGRFAM: Phenazine biosynthesis PhzC/PhzF protein; PFAM: Phenazine biosynthesis PhzC/PhzF protein.


ensembl_gene_id: Psed_1046
symbol: Psed_1046
gene_biotype: protein_coding
description:
  Citryl-CoA lyase; KEGG: ami:Amir_0805 citrate (pro-3S)-lyase; PFAM: Aldehyde-lyase domain; Belongs to the HpcH/HpaI aldolase family.


ensembl_gene_id: Psed_1047
symbol: Psed_1047
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_1078 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain.


ensembl_gene_id: Psed_1049
symbol: Psed_1049
gene_biotype: protein_coding
description:
  PFAM: Bacterial extracellular solute-binding, family 1; KEGG: rop:ROP_60480 putative ABC transporter substrate-binding protein.


ensembl_gene_id: Psed_1050
symbol: Psed_1050
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rop:ROP_60490 putative ABC transporter permease protein.


ensembl_gene_id: Psed_1051
symbol: Psed_1051
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: amd:AMED_1082 permease component of ABC-type sugar transport system.


ensembl_gene_id: Psed_1052
symbol: Psed_1052
gene_biotype: protein_coding
description:
  Glycerol-3-phosphate-transporting ATPase; PFAM: ABC transporter-like; KEGG: ami:Amir_0810 ABC transporter related; SMART: ATPase, AAA+ type, core; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Psed_1053
symbol: Psed_1053
gene_biotype: protein_coding
description:
  KEGG: sgr:SGR_2953 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal.


ensembl_gene_id: Psed_1054
symbol: Psed_1054
gene_biotype: protein_coding
description:
  TIGRFAM: 1-aminocyclopropane-1-carboxylate deaminase; KEGG: sgr:SGR_2954 1-aminocyclopropane-1-carboxylate deaminase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit.


ensembl_gene_id: Psed_1059
symbol: Psed_1059
gene_biotype: protein_coding
description:
  PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: amd:AMED_4084 rieske (2Fe-2S) domain-containing protein.


ensembl_gene_id: Psed_1060
symbol: corA
gene_biotype: protein_coding
description:
  Magnesium and cobalt transport protein CorA; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family.


ensembl_gene_id: Psed_1062
symbol: Psed_1062
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_1099 NUDIX hydrolase; manually curated; PFAM: NUDIX hydrolase domain; Belongs to the Nudix hydrolase family.


ensembl_gene_id: Psed_1065
symbol: Psed_1065
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_0820 PHP domain protein; PFAM: PHP, C-terminal; SMART: Polymerase/histidinol phosphatase, N-terminal.


ensembl_gene_id: Psed_1069
symbol: Psed_1069
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_0824 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; Belongs to the DEAD box helicase family.


ensembl_gene_id: Psed_1072
symbol: Psed_1072
gene_biotype: protein_coding
description:
  KEGG: cwo:Cwoe_0952 YhgE/Pip C-terminal domain protein; TIGRFAM: Phage infection protein, YhgE, C-terminal; Phage infection protein, YhgE, N-terminal; PFAM: ABC-2 type transporter.


ensembl_gene_id: Psed_1075
symbol: Psed_1075
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_0828 transcriptional regulator, TetR family; manually curated; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal.


ensembl_gene_id: Psed_1076
symbol: Psed_1076
gene_biotype: protein_coding
description:
  PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: mil:ML5_5255 short-chain dehydrogenase/reductase sdr.


ensembl_gene_id: Psed_1079
symbol: Psed_1079
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sen:SACE_1068 TetR family transcriptional regulator.


ensembl_gene_id: Psed_1080
symbol: Psed_1080
gene_biotype: protein_coding
description:
  TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: amd:AMED_3510 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase.


ensembl_gene_id: Psed_1082
symbol: Psed_1082
gene_biotype: protein_coding
description:
  PFAM: Alpha/beta hydrolase fold-1; KEGG: svi:Svir_06730 predicted hydrolase or acyltransferase of alpha/beta superfamily.


ensembl_gene_id: Psed_1083
symbol: Psed_1083
gene_biotype: protein_coding
description:
  UBA/THIF-type NAD/FAD binding protein; KEGG: ami:Amir_0833 molybdopterin biosynthesis-like protein MoeZ; PFAM: UBA/THIF-type NAD/FAD binding fold; MoeZ/MoeB; Rhodanese-like; SMART: Rhodanese-like.


ensembl_gene_id: Psed_1086
symbol: Psed_1086
gene_biotype: protein_coding
description:
  TIGRFAM: Conserved hypothetical protein CHP02569; KEGG: ami:Amir_0834 aminoglycoside phosphotransferase.


ensembl_gene_id: Psed_1087
symbol: Psed_1087
gene_biotype: protein_coding
description:
  Nitrite transporter; KEGG: sgr:SGR_4575 putative nitrate extrusion protein; TIGRFAM: Nitrate transporter; PFAM: Major facilitator superfamily MFS-1.


ensembl_gene_id: Psed_1088
symbol: Psed_1088
gene_biotype: protein_coding
description:
  PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase, Fe4S4 domain; Molydopterin dinucleotide-binding domain; KEGG: amd:AMED_1121 nitrate reductase catalytic subunit; SMART: Molybdopterin oxidoreductase, Fe4S4 domain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: Psed_1089
symbol: Psed_1089
gene_biotype: protein_coding
description:
  Nitrite reductase (NAD(P)H); KEGG: ami:Amir_0836 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD-like [2Fe-2S]-binding domain.


ensembl_gene_id: Psed_1090
symbol: Psed_1090
gene_biotype: protein_coding
description:
  TIGRFAM: Nitrite reductase [NAD(P)H] large subunit, NirB; KEGG: ami:Amir_0838 nitrite reductase (NAD(P)H), large subunit; PFAM: Nitrite/sulphite reductase 4Fe-4S domain; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD-like [2Fe-2S]-binding domain; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.


ensembl_gene_id: Psed_1091
symbol: Psed_1091
gene_biotype: protein_coding
description:
  Nitrite reductase (NAD(P)H), small subunit; KEGG: sro:Sros_5923 nitrite reductase (NAD(P)H); TIGRFAM: Nitrite reductase [NAD(P)H] large subunit, NirD; PFAM: Rieske [2Fe-2S] iron-sulphur domain.


ensembl_gene_id: Psed_1092
symbol: Psed_1092
gene_biotype: protein_coding
description:
  KEGG: sma:SAV_5120 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; PFAM: Tetrapyrrole biosynthesis, uroporphyrinogen III synthase; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, C-terminal.


ensembl_gene_id: Psed_1094
symbol: Psed_1094
gene_biotype: protein_coding
description:
  PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; KEGG: svi:Svir_06790 predicted methylated DNA-protein cysteine methyltransferase.


ensembl_gene_id: Psed_1096
symbol: Psed_1096
gene_biotype: protein_coding
description:
  PFAM: DNA helicase, UvrD/REP type; KEGG: ami:Amir_0852 UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.


ensembl_gene_id: Psed_1097
symbol: Psed_1097
gene_biotype: protein_coding
description:
  PFAM: DNA helicase, UvrD/REP type; KEGG: ami:Amir_0851 UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.


ensembl_gene_id: Psed_1099
symbol: Psed_1099
gene_biotype: protein_coding
description:
  Regulatory protein MarR; KEGG: ami:Amir_2612 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR.


ensembl_gene_id: Psed_1100
symbol: Psed_1100
gene_biotype: protein_coding
description:
  PFAM: Saccharopine dehydrogenase / Homospermidine synthase; KEGG: tbi:Tbis_3455 saccharopine dehydrogenase.


ensembl_gene_id: Psed_1101
symbol: Psed_1101
gene_biotype: protein_coding
description:
  TrkA-N domain protein; PFAM: Regulator of K+ conductance, N-terminal; Ion transport 2; KEGG: sen:SACE_1081 transmembrane cation transporter.


ensembl_gene_id: Psed_1103
symbol: xylB
gene_biotype: protein_coding
description:
  TIGRFAM: Xylulokinase; KEGG: gob:Gobs_2984 xylulokinase; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal.


ensembl_gene_id: Psed_1104
symbol: xylA
gene_biotype: protein_coding
description:
  TIGRFAM: Xylose isomerase, actinobacteria; HAMAP: Xylose isomerase; KEGG: ace:Acel_2064 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; Belongs to the xylose isomerase family.


ensembl_gene_id: Psed_1105
symbol: Psed_1105
gene_biotype: protein_coding
description:
  KEGG: gbr:Gbro_3810 exodeoxyribonuclease III Xth; TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; PFAM: Endonuclease/exonuclease/phosphatase.


ensembl_gene_id: Psed_1108
symbol: proA
gene_biotype: protein_coding
description:
  Glutamate-5-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.


ensembl_gene_id: Psed_1109
symbol: Psed_1109
gene_biotype: protein_coding
description:
  KEGG: fre:Franean1_0886 peptidase S1 and S6 chymotrypsin/Hap; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF.


ensembl_gene_id: Psed_1110
symbol: Psed_1110
gene_biotype: protein_coding
description:
  PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; KEGG: svi:Svir_06870 predicted Zn-dependent peptidase.


ensembl_gene_id: Psed_1111
symbol: Psed_1111
gene_biotype: protein_coding
description:
  PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; KEGG: svi:Svir_06880 predicted Zn-dependent peptidase.


ensembl_gene_id: Psed_1112
symbol: Psed_1112
gene_biotype: protein_coding
description:
  NAD(+) diphosphatase; KEGG: fal:FRAAL0398 NADH pyrophosphatase; PFAM: NUDIX hydrolase domain; Zinc ribbon, NADH pyrophosphatase; NADH pyrophosphatase-like, N-terminal.


ensembl_gene_id: Psed_1113
symbol: Psed_1113
gene_biotype: protein_coding
description:
  KEGG: cfl:Cfla_2470 glutaredoxin-like protein; TIGRFAM: Glutaredoxin-like protein, actinobacteria; PFAM: Glutaredoxin.


ensembl_gene_id: Psed_1114
symbol: Psed_1114
gene_biotype: protein_coding
description:
  UvrD/REP helicase; KEGG: amd:AMED_1233 ATP-dependent DNA helicase; PFAM: DNA helicase, UvrD/REP type; Helicase/RNase D C-terminal, HRDC domain; SMART: Helicase/RNase D C-terminal, HRDC domain.


ensembl_gene_id: Psed_1116
symbol: whiB
gene_biotype: protein_coding
description:
  Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.


ensembl_gene_id: Psed_1118
symbol: Psed_1118
gene_biotype: protein_coding
description:
  ABC-1 domain-containing protein; PFAM: ABC-1; KEGG: sen:SACE_1096 ABC transporter ATP-binding protein.


ensembl_gene_id: Psed_1120
symbol: Psed_1120
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_0937 protein of unknown function DUF45; manually curated; PFAM: Protein of unknown function DUF45.


ensembl_gene_id: Psed_1121
symbol: Psed_1121
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_1099 hypothetical protein; TIGRFAM: Protein of unknown function DUF2342; PFAM: Protein of unknown function DUF2342.


ensembl_gene_id: Psed_1122
symbol: Psed_1122
gene_biotype: protein_coding
description:
  UPF0182 protein; KEGG: amd:AMED_1246 hypothetical protein; HAMAP: Uncharacterised protein family UPF0182; PFAM: Uncharacterised protein family UPF0182.


ensembl_gene_id: Psed_1123
symbol: Psed_1123
gene_biotype: protein_coding
description:
  Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: mmc:Mmcs_1422 phage integrase.


ensembl_gene_id: Psed_1126
symbol: Psed_1126
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_1124 hypothetical protein; PFAM: DNA primase/polymerase, bifunctional, N-terminal; SMART: DNA primase/polymerase, bifunctional, N-terminal.


ensembl_gene_id: Psed_1132
symbol: Psed_1132
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; KEGG: nfa:nfa7010 putative transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR.


ensembl_gene_id: Psed_1135
symbol: Psed_1135
gene_biotype: protein_coding
description:
  RelA/SpoT domain protein; KEGG: mbt:JTY_1402 hypothetical protein; PFAM: RelA/SpoT; SMART: RelA/SpoT.


ensembl_gene_id: Psed_1140
symbol: Psed_1140
gene_biotype: protein_coding
description:
  KEGG: sro:Sros_4872 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2.


ensembl_gene_id: Psed_1141
symbol: Psed_1141
gene_biotype: protein_coding
description:
  PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: sen:SACE_2518 hypothetical protein.


ensembl_gene_id: Psed_1145
symbol: Psed_1145
gene_biotype: protein_coding
description:
  PFAM: Transposase, IS111A/IS1328/IS1533, N-terminal; Transposase, IS116/IS110/IS902; KEGG: nml:Namu_4764 transposase IS111A/IS1328/IS1533.


ensembl_gene_id: Psed_1151
symbol: Psed_1151
gene_biotype: protein_coding
description:
  KEGG: rha:RHA1_ro02683 succinate-semialdehyde dehydrogenase (NAD(P)+); PFAM: Aldehyde dehydrogenase domain; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: Psed_1152
symbol: Psed_1152
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: pde:Pden_4407 permease for cytosine/purines, uracil, thiamine, allantoin transporter.


ensembl_gene_id: Psed_1153
symbol: Psed_1153
gene_biotype: protein_coding
description:
  KEGG: sno:Snov_1568 5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal.


ensembl_gene_id: Psed_1154
symbol: Psed_1154
gene_biotype: protein_coding
description:
  5-oxoprolinase (ATP-hydrolyzing); KEGG: msm:MSMEG_3973 N-methylhydantoinase; PFAM: Hydantoinase B/oxoprolinase.


ensembl_gene_id: Psed_1155
symbol: Psed_1155
gene_biotype: protein_coding
description:
  KEGG: rme:Rmet_1316 methane/phenol/toluene hydroxylase; PFAM: Methane/phenol/toluene hydroxylase; YHS.


ensembl_gene_id: Psed_1161
symbol: Psed_1161
gene_biotype: protein_coding
description:
  PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: fal:FRAAL4441 putative LysR-type transcriptional regulator; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Psed_1163
symbol: Psed_1163
gene_biotype: protein_coding
description:
  Regulatory protein ArsR; SMART: HTH transcriptional regulator, ArsR; KEGG: nfa:nfa28340 putative transcriptional regulator.


ensembl_gene_id: Psed_1164
symbol: Psed_1164
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sen:SACE_4482 hypothetical protein.


ensembl_gene_id: Psed_1168
symbol: Psed_1168
gene_biotype: protein_coding
description:
  KEGG: gob:Gobs_0783 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Psed_1170
symbol: Psed_1170
gene_biotype: protein_coding
description:
  Transcriptional regulator, SARP family; PFAM: Bacterial transcriptional activator domain; KEGG: cwo:Cwoe_4257 transcriptional regulator, SARP family.


ensembl_gene_id: Psed_1174
symbol: Psed_1174
gene_biotype: protein_coding
description:
  Queuosine biosynthesis protein; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).


ensembl_gene_id: Psed_1175
symbol: Psed_1175
gene_biotype: protein_coding
description:
  Short-chain dehydrogenase/reductase SDR; KEGG: amd:AMED_1538 short-chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Psed_1176
symbol: Psed_1176
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; TIGRFAM: Redox-sensitive transcriptional activator SoxR; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: fre:Franean1_1287 MerR family transcriptional regulator; SMART: HTH transcriptional regulator, MerR.


ensembl_gene_id: Psed_1182
symbol: Psed_1182
gene_biotype: protein_coding
description:
  PFAM: Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: fre:Franean1_5603 acyl-CoA dehydrogenase domain-containing protein.


ensembl_gene_id: Psed_1183
symbol: Psed_1183
gene_biotype: protein_coding
description:
  PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: fri:FraEuI1c_1232 acyl-CoA dehydrogenase domain-containing protein.


ensembl_gene_id: Psed_1184
symbol: Psed_1184
gene_biotype: protein_coding
description:
  PFAM: Transcription regulator PadR N-terminal-like; KEGG: sen:SACE_1104 PadR family transcriptional regulator.


ensembl_gene_id: Psed_1185
symbol: prfB
gene_biotype: protein_coding
description:
  Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.


ensembl_gene_id: Psed_1186
symbol: ftsE
gene_biotype: protein_coding
description:
  Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.


ensembl_gene_id: Psed_1187
symbol: Psed_1187
gene_biotype: protein_coding
description:
  Protein of unknown function DUF214; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.


ensembl_gene_id: Psed_1188
symbol: smpB
gene_biotype: protein_coding
description:
  SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]


ensembl_gene_id: Psed_1195
symbol: Psed_1195
gene_biotype: protein_coding
description:
  KEGG: nml:Namu_2025 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal.


ensembl_gene_id: Psed_1202
symbol: Psed_1202
gene_biotype: protein_coding
description:
  Resolvase domain protein; KEGG: fra:Francci3_0910 recombinase; PFAM: Resolvase, N-terminal; Recombinase; SMART: Resolvase, N-terminal.


ensembl_gene_id: Psed_1204
symbol: Psed_1204
gene_biotype: protein_coding
description:
  KEGG: fra:Francci3_1684 resolvase-like protein; PFAM: Resolvase, N-terminal; SMART: Resolvase, N-terminal.


ensembl_gene_id: Psed_1211
symbol: Psed_1211
gene_biotype: protein_coding
description:
  PFAM: Transposase, IS111A/IS1328/IS1533, N-terminal; Transposase, IS116/IS110/IS902; KEGG: amd:AMED_0075 transposase.


ensembl_gene_id: Psed_1225
symbol: Psed_1225
gene_biotype: protein_coding
description:
  KEGG: svi:Svir_09850 DNA protecting protein DprA; TIGRFAM: DNA recombination-mediator protein A; PFAM: DNA recombination-mediator protein A.


ensembl_gene_id: Psed_1253
symbol: tmk
gene_biotype: protein_coding
description:
  Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.


ensembl_gene_id: Psed_1260
symbol: Psed_1260
gene_biotype: protein_coding
description:
  DEAD/DEAH box helicase domain protein; KEGG: sen:SACE_5087 hypothetical protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal.


ensembl_gene_id: Psed_1267
symbol: Psed_1267
gene_biotype: protein_coding
description:
  KEGG: sco:SCO3450 ECF subfamily RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2.


ensembl_gene_id: Psed_1273
symbol: Psed_1273
gene_biotype: protein_coding
description:
  PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 1; KEGG: mmi:MMAR_1618 multicopper oxidase, type 1, CueO.


ensembl_gene_id: Psed_1276
symbol: Psed_1276
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family; KEGG: mbt:JTY_1688 putative transcriptional regulatory protein; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp.


ensembl_gene_id: Psed_1277
symbol: Psed_1277
gene_biotype: protein_coding
description:
  Dihydrolipoyl dehydrogenase; KEGG: sco:SCO3443 pyridine nucleotide-disulphide oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase, dimerisation; FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Psed_1279
symbol: Psed_1279
gene_biotype: protein_coding
description:
  Uncharacterized peroxidase-related enzyme; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.


ensembl_gene_id: Psed_1280
symbol: Psed_1280
gene_biotype: protein_coding
description:
  PFAM: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: Psed_1285
symbol: Psed_1285
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family; KEGG: mmi:MMAR_1621 transcriptional regulatory protein; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp.


ensembl_gene_id: Psed_1288
symbol: Psed_1288
gene_biotype: protein_coding
description:
  TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: nha:Nham_4423 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase.


ensembl_gene_id: Psed_1289
symbol: Psed_1289
gene_biotype: protein_coding
description:
  PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533, N-terminal; KEGG: pth:PTH_2396 transposase and inactivated derivatives.


ensembl_gene_id: Psed_1291
symbol: Psed_1291
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; KEGG: mlu:Mlut_06140 predicted transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR.


ensembl_gene_id: Psed_1292
symbol: Psed_1292
gene_biotype: protein_coding
description:
  PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: nca:Noca_1643 hypothetical protein.


ensembl_gene_id: Psed_1294
symbol: Psed_1294
gene_biotype: protein_coding
description:
  Mercury(II) reductase; KEGG: saq:Sare_4668 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation.


ensembl_gene_id: Psed_1295
symbol: Psed_1295
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: cai:Caci_5058 transcriptional regulator, TetR family.


ensembl_gene_id: Psed_1296
symbol: Psed_1296
gene_biotype: protein_coding
description:
  Carboxymuconolactone decarboxylase; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.


ensembl_gene_id: Psed_1297
symbol: Psed_1297
gene_biotype: protein_coding
description:
  Haloacid dehalogenase, type II; KEGG: sen:SACE_2965 haloacid dehalogenase-like hydrolase; TIGRFAM: Haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2; PFAM: Haloacid dehalogenase-like hydrolase.


ensembl_gene_id: Psed_1298
symbol: Psed_1298
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_8842 glutaredoxin-like protein; TIGRFAM: Glutaredoxin-like protein, actinobacteria; PFAM: Glutaredoxin.


ensembl_gene_id: Psed_1300
symbol: Psed_1300
gene_biotype: protein_coding
description:
  PFAM: Cytochrome c assembly protein, transmembrane domain; KEGG: mab:MAB_4275c hypothetical protein.


ensembl_gene_id: Psed_1303
symbol: Psed_1303
gene_biotype: protein_coding
description:
  PFAM: Heavy metal transport/detoxification protein; KEGG: bae:BATR1942_14715 copper insertion chaperone and transporter component.


ensembl_gene_id: Psed_1304
symbol: Psed_1304
gene_biotype: protein_coding
description:
  TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: mmi:MMAR_1431 cation transport ATPase, ZntA; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase.


ensembl_gene_id: Psed_1308
symbol: Psed_1308
gene_biotype: protein_coding
description:
  KEGG: saq:Sare_4666 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2.


ensembl_gene_id: Psed_1311
symbol: Psed_1311
gene_biotype: protein_coding
description:
  KEGG: nca:Noca_4945 regulatory protein, MerR; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR.


ensembl_gene_id: Psed_1316
symbol: Psed_1316
gene_biotype: protein_coding
description:
  Regulatory protein ArsR; KEGG: mmi:MMAR_p13 transcriptional repressor protein, MerR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR.


ensembl_gene_id: Psed_1317
symbol: Psed_1317
gene_biotype: protein_coding
description:
  TIGRFAM: Mercury reductase, MerA; KEGG: mil:ML5_4212 mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation.


ensembl_gene_id: Psed_1318
symbol: Psed_1318
gene_biotype: protein_coding
description:
  KEGG: nca:Noca_4945 regulatory protein, MerR; PFAM: HTH transcriptional regulator, MerR; Transcription regulator MerR, DNA binding; SMART: HTH transcriptional regulator, MerR.


ensembl_gene_id: Psed_1324
symbol: Psed_1324
gene_biotype: protein_coding
description:
  KEGG: stp:Strop_1661 helix-turn-helix domain-containing protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3.


ensembl_gene_id: Psed_1327
symbol: Psed_1327
gene_biotype: protein_coding
description:
  Propanoyl-CoA C-acyltransferase; KEGG: bbr:BB1086 putative thiolase; PFAM: Thiolase, C-terminal; Beta-ketoacyl synthase, N-terminal; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Psed_1329
symbol: Psed_1329
gene_biotype: protein_coding
description:
  Transcriptional regulator, CdaR; KEGG: mva:Mvan_4407 putative GAF sensor protein; PFAM: GAF; SMART: GAF.


ensembl_gene_id: Psed_1331
symbol: Psed_1331
gene_biotype: protein_coding
description:
  TIGRFAM: LPPG:Fo 2-phospho-L-lactate transferase; HAMAP: LPPG:FO 2-phospho-L-lactate transferase; KEGG: rrs:RoseRS_1138 LPPG:FO 2-phospho-L-lactate transferase; PFAM: LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052.


ensembl_gene_id: Psed_1334
symbol: Psed_1334
gene_biotype: protein_coding
description:
  5-carboxymethyl-2-hydroxymuconate Delta-isomerase; KEGG: bra:BRADO6046 bifunctional enzyme with isomerase/decarboxylase activity; PFAM: Fumarylacetoacetase, C-terminal-like.


ensembl_gene_id: Psed_1336
symbol: dapA
gene_biotype: protein_coding
description:
  Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).


ensembl_gene_id: Psed_1338
symbol: Psed_1338
gene_biotype: protein_coding
description:
  PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pen:PSEEN2584 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Psed_1340
symbol: Psed_1340
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: fal:FRAAL0421 putative regulatory protein.


ensembl_gene_id: Psed_1341
symbol: Psed_1341
gene_biotype: protein_coding
description:
  Gamma-glutamyltransferase; Manually curated; KEGG: sco:SCO5945 transferase; PFAM: Gamma-glutamyltranspeptidase.


ensembl_gene_id: Psed_1342
symbol: Psed_1342
gene_biotype: protein_coding
description:
  KEGG: cwo:Cwoe_2765 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR.


ensembl_gene_id: Psed_1345
symbol: Psed_1345
gene_biotype: protein_coding
description:
  PFAM: Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: mva:Mvan_0394 acyl-CoA dehydrogenase domain-containing protein.


ensembl_gene_id: Psed_1346
symbol: Psed_1346
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_3864 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain.


ensembl_gene_id: Psed_1349
symbol: Psed_1349
gene_biotype: protein_coding
description:
  KEGG: mmi:MMAR_4757 acyl-CoA transferase; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.


ensembl_gene_id: Psed_1350
symbol: Psed_1350
gene_biotype: protein_coding
description:
  KEGG: fre:Franean1_4505 luciferase family protein; TIGRFAM: Luciferase family oxidoreductase, group 1; PFAM: Luciferase-like, subgroup.


ensembl_gene_id: Psed_1352
symbol: Psed_1352
gene_biotype: protein_coding
description:
  SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: fri:FraEuI1c_3097 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Psed_1353
symbol: Psed_1353
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: fri:FraEuI1c_3096 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Psed_1354
symbol: Psed_1354
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: fal:FRAAL0338 ABC transporter oligopeptide permease.


ensembl_gene_id: Psed_1355
symbol: Psed_1355
gene_biotype: protein_coding
description:
  ABC-type transporter, periplasmic subunit; PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: fal:FRAAL0339 ABC transporter oligopeptide binding protein.


ensembl_gene_id: Psed_1357
symbol: Psed_1357
gene_biotype: protein_coding
description:
  PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: fre:Franean1_4114 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR.


ensembl_gene_id: Psed_1358
symbol: Psed_1358
gene_biotype: protein_coding
description:
  KEGG: cwo:Cwoe_4297 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR.


ensembl_gene_id: Psed_1359
symbol: Psed_1359
gene_biotype: protein_coding
description:
  MoeA domain protein domain I and II; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.


ensembl_gene_id: Psed_1361
symbol: Psed_1361
gene_biotype: protein_coding
description:
  KEGG: mav:MAV_3101 oxidoreductase, short chain dehydrogenase/reductase family protein; PFAM: Short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Psed_1363
symbol: Psed_1363
gene_biotype: protein_coding
description:
  Formyl-CoA transferase; KEGG: nml:Namu_0044 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.


ensembl_gene_id: Psed_1364
symbol: Psed_1364
gene_biotype: protein_coding
description:
  KEGG: pla:Plav_1165 cyclohexanone monooxygenase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal.


ensembl_gene_id: Psed_1365
symbol: ribBA
gene_biotype: protein_coding
description:
  GTP cyclohydrolase-2; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.


ensembl_gene_id: Psed_1366
symbol: Psed_1366
gene_biotype: protein_coding
description:
  4-hydroxyacetophenone monooxygenase; KEGG: mmi:MMAR_0240 monoooxygenase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal.


ensembl_gene_id: Psed_1368
symbol: Psed_1368
gene_biotype: protein_coding
description:
  SMP-30/Gluconolaconase/LRE-like region-containing protein; PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: fri:FraEuI1c_5596 SMP-30/gluconolaconase/LRE-like region-containing protein.


ensembl_gene_id: Psed_1370
symbol: Psed_1370
gene_biotype: protein_coding
description:
  Manually curated; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; KEGG: mrb:Mrub_0282 LacI family transcriptional regulator; SMART: HTH transcriptional regulator, LacI.


ensembl_gene_id: Psed_1371
symbol: Psed_1371
gene_biotype: protein_coding
description:
  TIGRFAM: Luciferase-like, F420-dependent oxidoreductase, MSMEG4141, predicted; KEGG: mab:MAB_0995 hypothetical protein.


ensembl_gene_id: Psed_1372
symbol: Psed_1372
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: rer:RER_50580 TetR family transcriptional regulator.


ensembl_gene_id: Psed_1374
symbol: Psed_1374
gene_biotype: protein_coding
description:
  Nitrate reductase; PFAM: Molydopterin dinucleotide-binding domain; Molybdopterin oxidoreductase; Molybdopterin oxidoreductase, Fe4S4 domain; KEGG: rop:ROP_17970 putative oxidoreductase; SMART: Molybdopterin oxidoreductase, Fe4S4 domain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: Psed_1375
symbol: Psed_1375
gene_biotype: protein_coding
description:
  Microsomal epoxide hydrolase; KEGG: fre:Franean1_6244 epocide hydrolase domain-containing protein; PFAM: Epoxide hydrolase, N-terminal; Alpha/beta hydrolase fold-1.


ensembl_gene_id: Psed_1376
symbol: Psed_1376
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: fra:Francci3_0380 ABC-type branched-chain amino acid transport systems periplasmic component-like protein.


ensembl_gene_id: Psed_1377
symbol: Psed_1377
gene_biotype: protein_coding
description:
  Polyamine-transporting ATPase; PFAM: ABC transporter-like; ABC transporter permease; KEGG: amd:AMED_7155 fused ATPase and permease components of ABC-type branched-chain amino acid transport system; SMART: ATPase, AAA+ type, core; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Psed_1378
symbol: Psed_1378
gene_biotype: protein_coding
description:
  ABC transporter related protein; KEGG: fal:FRAAL5036 high-affinity branched-chain amino acid ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_1379
symbol: Psed_1379
gene_biotype: protein_coding
description:
  KEGG: mmi:MMAR_1575 oxidoreductase; TIGRFAM: Luciferase-like, F420-dependent oxidoreductase, Rv2161c, predicted; PFAM: Luciferase-like, subgroup.


ensembl_gene_id: Psed_1380
symbol: Psed_1380
gene_biotype: protein_coding
description:
  PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA dehydrogenase, type 2, C-terminal; KEGG: sth:STH2357 acyl-CoA dehydrogenase, short-chain specific.


ensembl_gene_id: Psed_1382
symbol: Psed_1382
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: mav:MAV_5258 hypothetical protein.


ensembl_gene_id: Psed_1384
symbol: Psed_1384
gene_biotype: protein_coding
description:
  Choline dehydrogenase; KEGG: msm:MSMEG_0526 oxidoreductase, GMC family protein; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal.


ensembl_gene_id: Psed_1385
symbol: Psed_1385
gene_biotype: protein_coding
description:
  PFAM: Aldehyde dehydrogenase domain; KEGG: tcu:Tcur_2494 betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: Psed_1390
symbol: Psed_1390
gene_biotype: protein_coding
description:
  PFAM: Major facilitator superfamily MFS-1; KEGG: sgr:SGR_550 major facilitator superfamily permease.


ensembl_gene_id: Psed_1393
symbol: Psed_1393
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: scb:SCAB_1731 TetR family regulator.


ensembl_gene_id: Psed_1395
symbol: Psed_1395
gene_biotype: protein_coding
description:
  TIGRFAM: CocE/NonD hydrolase; PFAM: Peptidase S15/CocE/NonD, C-terminal; Peptidase S9/S15; KEGG: rxy:Rxyl_2383 peptidase S15; SMART: Peptidase S15/CocE/NonD, C-terminal.


ensembl_gene_id: Psed_1397
symbol: Psed_1397
gene_biotype: protein_coding
description:
  TAP domain protein; PFAM: Peptidase S33, tripeptidyl-peptidase C-terminal; Alpha/beta hydrolase fold-1; KEGG: sen:SACE_1611 exported protease.


ensembl_gene_id: Psed_1401
symbol: Psed_1401
gene_biotype: protein_coding
description:
  KEGG: gob:Gobs_3806 threonyl/alanyl tRNA synthetase SAD; PFAM: Threonyl/alanyl tRNA synthetase, SAD; Alanyl-tRNA synthetase, class IIc, N-terminal; SMART: Threonyl/alanyl tRNA synthetase, SAD.


ensembl_gene_id: Psed_1402
symbol: Psed_1402
gene_biotype: protein_coding
description:
  PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: stp:Strop_2558 deaminase-reductase domain-containing protein.


ensembl_gene_id: Psed_1403
symbol: Psed_1403
gene_biotype: protein_coding
description:
  PFAM: CDP-alcohol phosphatidyltransferase; KEGG: tcu:Tcur_2744 CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: Psed_1409
symbol: Psed_1409
gene_biotype: protein_coding
description:
  KEGG: rer:RER_50600 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type.


ensembl_gene_id: Psed_1410
symbol: Psed_1410
gene_biotype: protein_coding
description:
  TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; KEGG: req:REQ_44720 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Psed_1412
symbol: Psed_1412
gene_biotype: protein_coding
description:
  ABC-type transporter, periplasmic subunit; PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: fre:Franean1_4222 extracellular solute-binding protein.


ensembl_gene_id: Psed_1413
symbol: Psed_1413
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mau:Micau_1726 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Psed_1414
symbol: Psed_1414
gene_biotype: protein_coding
description:
  Phthalate 4,5-dioxygenase; KEGG: reu:Reut_B5781 Rieske (2Fe-2S) region; PFAM: Rieske [2Fe-2S] iron-sulphur domain.


ensembl_gene_id: Psed_1415
symbol: Psed_1415
gene_biotype: protein_coding
description:
  PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: sco:SCO6309 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Psed_1416
symbol: Psed_1416
gene_biotype: protein_coding
description:
  ABC-type transporter, periplasmic subunit; PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: sti:Sthe_0680 extracellular solute-binding protein family 5.


ensembl_gene_id: Psed_1417
symbol: Psed_1417
gene_biotype: protein_coding
description:
  Phosphoribulokinase; KEGG: lch:Lcho_3754 phosphoribulokinase; PFAM: Phosphoribulokinase/uridine kinase.


ensembl_gene_id: Psed_1418
symbol: fbp
gene_biotype: protein_coding
description:
  HAMAP: Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase; KEGG: cti:RALTA_B1696 fructose 1,6-bisphosphatase (RuBisCO operon); PFAM: Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase.


ensembl_gene_id: Psed_1421
symbol: Psed_1421
gene_biotype: protein_coding
description:
  Ferric uptake regulator, Fur family; PFAM: Ferric-uptake regulator; KEGG: stp:Strop_2053 ferric-uptake regulator; Belongs to the Fur family.


ensembl_gene_id: Psed_1423
symbol: Psed_1423
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: kra:Krad_4434 transcriptional regulator.


ensembl_gene_id: Psed_1425
symbol: Psed_1425
gene_biotype: protein_coding
description:
  UPF0235 protein yggU; KEGG: ace:Acel_0486 hypothetical protein; HAMAP: Protein of unknown function DUF167; PFAM: Protein of unknown function DUF167; Belongs to the UPF0235 family.


ensembl_gene_id: Psed_1429
symbol: Psed_1429
gene_biotype: protein_coding
description:
  Protein of unknown function DUF74; PFAM: Uncharacterised protein family UPF0145; KEGG: cai:Caci_1282 hypothetical protein.


ensembl_gene_id: Psed_1430
symbol: Psed_1430
gene_biotype: protein_coding
description:
  Protein of unknown function DUF74; PFAM: Uncharacterised protein family UPF0145; KEGG: cai:Caci_1283 protein of unknown function DUF74.


ensembl_gene_id: Psed_1432
symbol: Psed_1432
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; KEGG: abc:ACICU_01880 AraC-type DNA-binding domain-containing protein; PFAM: HTH transcriptional regulator, AraC, N-terminal; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain.


ensembl_gene_id: Psed_1440
symbol: Psed_1440
gene_biotype: protein_coding
description:
  PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: bts:Btus_2067 Rieske (2Fe-2S) iron-sulfur domain protein.


ensembl_gene_id: Psed_1441
symbol: Psed_1441
gene_biotype: protein_coding
description:
  Ferredoxin--NAD(+) reductase; KEGG: nca:Noca_4282 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Psed_1442
symbol: Psed_1442
gene_biotype: protein_coding
description:
  Ribosomal protein L22/L17; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g., L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.


ensembl_gene_id: Psed_1445
symbol: Psed_1445
gene_biotype: protein_coding
description:
  KEGG: kfl:Kfla_5298 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3.


ensembl_gene_id: Psed_1447
symbol: Psed_1447
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazolecarboxamide formyltransferase; PFAM: AICARFT/IMPCHase bienzyme, transformylase domain; KEGG: fri:FraEuI1c_3679 phosphoribosylaminoimidazolecarboxamide formyltransferase; SMART: AICARFT/IMPCHase bienzyme, transformylase domain.


ensembl_gene_id: Psed_1448
symbol: Psed_1448
gene_biotype: protein_coding
description:
  PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: kfl:Kfla_0918 fumarate reductase/succinate dehydrogenase flavoprotein domain protein.


ensembl_gene_id: Psed_1449
symbol: Psed_1449
gene_biotype: protein_coding
description:
  Acetolactate synthase; KEGG: rfr:Rfer_2478 thiamine pyrophosphate enzyme-like TPP binding protein; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Belongs to the TPP enzyme family.


ensembl_gene_id: Psed_1451
symbol: Psed_1451
gene_biotype: protein_coding
description:
  TIGRFAM: Nitrile hydratase, alpha subunit; KEGG: aau:AAur_pTC20146 nitrile hydratase, alpha subunit; PFAM: Nitrile hydratase, alpha subunit/Thiocyanate hydrolase, gamma subunit.


ensembl_gene_id: Psed_1452
symbol: Psed_1452
gene_biotype: protein_coding
description:
  Nitrile hydratase; NHase catalyzes the hydration of various nitrile compounds to the corresponding amides; Belongs to the nitrile hydratase subunit beta family.


ensembl_gene_id: Psed_1455
symbol: Psed_1455
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mjl:Mjls_1024 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Psed_1456
symbol: Psed_1456
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_0110 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2.


ensembl_gene_id: Psed_1458
symbol: Psed_1458
gene_biotype: protein_coding
description:
  KEGG: rlt:Rleg2_6079 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Psed_1459
symbol: Psed_1459
gene_biotype: protein_coding
description:
  KEGG: sti:Sthe_2868 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Psed_1460
symbol: Psed_1460
gene_biotype: protein_coding
description:
  Carbon-monoxide dehydrogenase (acceptor); KEGG: rxy:Rxyl_0111 (2Fe-2S)-binding protein; PFAM: [2Fe-2S]-binding; Ferredoxin.


ensembl_gene_id: Psed_1461
symbol: Psed_1461
gene_biotype: protein_coding
description:
  Carbon-monoxide dehydrogenase (acceptor); KEGG: tcu:Tcur_4235 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead.


ensembl_gene_id: Psed_1462
symbol: Psed_1462
gene_biotype: protein_coding
description:
  Transcriptional regulator, AsnC family; KEGG: sco:SCO1119 transcription regulator AsnC; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type.


ensembl_gene_id: Psed_1463
symbol: Psed_1463
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_5858 indolepyruvate ferredoxin oxidoreductase; PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain.


ensembl_gene_id: Psed_1464
symbol: Psed_1464
gene_biotype: protein_coding
description:
  PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: mes:Meso_0482 fumarate reductase/succinate dehydrogenase flavoprotein-like.


ensembl_gene_id: Psed_1465
symbol: Psed_1465
gene_biotype: protein_coding
description:
  Regulatory protein LuxR; KEGG: nml:Namu_2913 LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal.


ensembl_gene_id: Psed_1467
symbol: Psed_1467
gene_biotype: protein_coding
description:
  PFAM: FAD linked oxidase, N-terminal; KEGG: nml:Namu_2915 FAD linked oxidase domain-containing protein.


ensembl_gene_id: Psed_1473
symbol: Psed_1473
gene_biotype: protein_coding
description:
  Putative F420-dependent oxidoreductase; KEGG: fra:Francci3_2659 luciferase-like protein; TIGRFAM: Luciferase-like, F420-dependent oxidoreductase, MSMEG2516, predicted; PFAM: Luciferase-like, subgroup.


ensembl_gene_id: Psed_1474
symbol: Psed_1474
gene_biotype: protein_coding
description:
  Succinate dehydrogenase; KEGG: ccu:Ccur_13640 flavocytochrome c; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal.


ensembl_gene_id: Psed_1476
symbol: Psed_1476
gene_biotype: protein_coding
description:
  Oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: swi:Swit_0294 oxidoreductase domain-containing protein.


ensembl_gene_id: Psed_1478
symbol: Psed_1478
gene_biotype: protein_coding
description:
  Protein of unknown function DUF1271; PFAM: Ferredoxin soy-like; KEGG: sgr:SGR_263 putative ferredoxin.


ensembl_gene_id: Psed_1479
symbol: Psed_1479
gene_biotype: protein_coding
description:
  KEGG: tcu:Tcur_3385 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Psed_1480
symbol: Psed_1480
gene_biotype: protein_coding
description:
  Metal dependent phosphohydrolase; KEGG: rha:RHA1_ro00299 hypothetical protein; TIGRFAM: Uncharacterised protein family HDIG; PFAM: Metal-dependent phosphohydrolase, HD subdomain.


ensembl_gene_id: Psed_1481
symbol: Psed_1481
gene_biotype: protein_coding
description:
  KEGG: sco:SCO0466 AraC family transcription regulator; PFAM: ThiJ/PfpI; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain.


ensembl_gene_id: Psed_1482
symbol: Psed_1482
gene_biotype: protein_coding
description:
  Aminocarboxymuconate-semialdehyde decarboxylase; KEGG: jan:Jann_2274 amidohydrolase 2; PFAM: Amidohydrolase 2.


ensembl_gene_id: Psed_1484
symbol: Psed_1484
gene_biotype: protein_coding
description:
  KEGG: jan:Jann_2271 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Psed_1485
symbol: Psed_1485
gene_biotype: protein_coding
description:
  Transcriptional regulator, TrmB; PFAM: Transcription regulator TrmB, N-terminal; KEGG: sro:Sros_2039 helix-turn-helix family DUF118.


ensembl_gene_id: Psed_1490
symbol: Psed_1490
gene_biotype: protein_coding
description:
  benzoyl-CoA-dihydrodiol lyase; KEGG: amd:AMED_8611 enoyl-CoA hydratase; TIGRFAM: Benzoyl-CoA-dihydrodiol lyase; PFAM: Crotonase, core.


ensembl_gene_id: Psed_1491
symbol: Psed_1491
gene_biotype: protein_coding
description:
  TIGRFAM: Benzoate-CoA ligase family; KEGG: amd:AMED_8609 benzoate-CoA ligase; PFAM: AMP-dependent synthetase/ligase.


ensembl_gene_id: Psed_1492
symbol: Psed_1492
gene_biotype: protein_coding
description:
  Alcohol dehydrogenase zinc-binding domain protein; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: gbr:Gbro_3823 alcohol dehydrogenase GroES domain-containing protein.


ensembl_gene_id: Psed_1493
symbol: Psed_1493
gene_biotype: protein_coding
description:
  KEGG: sti:Sthe_2861 ATPase associated with various cellular activities AAA_5; PFAM: ATPase, AAA-5; vWA containing CoxE-like; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_1494
symbol: Psed_1494
gene_biotype: protein_coding
description:
  LmbE family protein; PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; KEGG: amd:AMED_7014 LmbE family protein.


ensembl_gene_id: Psed_1495
symbol: Psed_1495
gene_biotype: protein_coding
description:
  Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.


ensembl_gene_id: Psed_1496
symbol: Psed_1496
gene_biotype: protein_coding
description:
  TIGRFAM: Phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB, PSPase-like; KEGG: sen:SACE_1188 phosphoserine phosphatase; PFAM: Haloacid dehalogenase-like hydrolase; Amino acid-binding ACT.


ensembl_gene_id: Psed_1499
symbol: Psed_1499
gene_biotype: protein_coding
description:
  TIGRFAM: Nitrile hydratase, alpha subunit; KEGG: msp:Mspyr1_51780 nitrile hydratase, alpha subunit; PFAM: Nitrile hydratase, alpha subunit/Thiocyanate hydrolase, gamma subunit.


ensembl_gene_id: Psed_1501
symbol: Psed_1501
gene_biotype: protein_coding
description:
  KEGG: mva:Mvan_5828 AraC family transcriptional regulator; PFAM: ThiJ/PfpI; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain.


ensembl_gene_id: Psed_1502
symbol: Psed_1502
gene_biotype: protein_coding
description:
  SMART: Helicase, ATP-dependent, c2 type; DEAD-like helicase, N-terminal; KEGG: ami:Amir_0995 helicase C2.


ensembl_gene_id: Psed_1505
symbol: Psed_1505
gene_biotype: protein_coding
description:
  Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.


ensembl_gene_id: Psed_1506
symbol: clpS
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease adapter protein clpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.


ensembl_gene_id: Psed_1507
symbol: Psed_1507
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function DUF2017; KEGG: svi:Svir_29220 protein of unknown function (DUF2017).


ensembl_gene_id: Psed_1511
symbol: Psed_1511
gene_biotype: protein_coding
description:
  TIGRFAM: Cysteine synthase K/M; KEGG: sen:SACE_1206 cysteine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit.


ensembl_gene_id: Psed_1517
symbol: Psed_1517
gene_biotype: protein_coding
description:
  Beta-lactamase domain protein; KEGG: sen:SACE_1210 beta-lactamase-like; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like.


ensembl_gene_id: Psed_1519
symbol: rph
gene_biotype: protein_coding
description:
  Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.


ensembl_gene_id: Psed_1520
symbol: Psed_1520
gene_biotype: protein_coding
description:
  Nucleoside-triphosphatase rdgB; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.


ensembl_gene_id: Psed_1524
symbol: Psed_1524
gene_biotype: protein_coding
description:
  PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: mjl:Mjls_3657 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.


ensembl_gene_id: Psed_1526
symbol: Psed_1526
gene_biotype: protein_coding
description:
  KEGG: rop:ROP_61090 ferredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Psed_1527
symbol: Psed_1527
gene_biotype: protein_coding
description:
  KEGG: svi:Svir_01790 RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma-B/F/G type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3.


ensembl_gene_id: Psed_1531
symbol: Psed_1531
gene_biotype: protein_coding
description:
  KEGG: gob:Gobs_2116 anti-sigma-factor antagonist; TIGRFAM: Anti-sigma factor antagonist; PFAM: Sulphate transporter/antisigma-factor antagonist STAS.


ensembl_gene_id: Psed_1532
symbol: Psed_1532
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_3551 selenocysteine-specific translation elongation factor; TIGRFAM: Translation elongation factor, selenocysteine-specific; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor SelB, winged helix, type 3.


ensembl_gene_id: Psed_1533
symbol: selA
gene_biotype: protein_coding
description:
  L-seryl-tRNA selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.


ensembl_gene_id: Psed_1540
symbol: Psed_1540
gene_biotype: protein_coding
description:
  Phosphonate-transporting ATPase; PFAM: ABC transporter-like; KEGG: fri:FraEuI1c_6806 ABC transporter related protein; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_1541
symbol: Psed_1541
gene_biotype: protein_coding
description:
  Histidine kinase; KEGG: fri:FraEuI1c_6805 multi-sensor signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain.


ensembl_gene_id: Psed_1542
symbol: Psed_1542
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: fre:Franean1_6492 hypothetical protein.


ensembl_gene_id: Psed_1543
symbol: Psed_1543
gene_biotype: protein_coding
description:
  GntR domain protein; KEGG: amd:AMED_3094 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR.


ensembl_gene_id: Psed_1544
symbol: Psed_1544
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) reductase; KEGG: bmd:BMD_5005 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Psed_1545
symbol: Psed_1545
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: Psed_1546
symbol: Psed_1546
gene_biotype: protein_coding
description:
  Biotin carboxylase; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; KEGG: rop:ROP_29700 acetyl-CoA carboxylase biotin carboxylase subunit; SMART: Biotin carboxylase, C-terminal.


ensembl_gene_id: Psed_1547
symbol: Psed_1547
gene_biotype: protein_coding
description:
  Pyruvate carboxylase; KEGG: rop:ROP_29690 putative carboxyltransferase; PFAM: Carboxylase, conserved domain; Pyruvate carboxyltransferase.


ensembl_gene_id: Psed_1552
symbol: Psed_1552
gene_biotype: protein_coding
description:
  KEGG: rop:ROP_29720 pyruvate phosphate dikinase; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile domain.


ensembl_gene_id: Psed_1553
symbol: Psed_1553
gene_biotype: protein_coding
description:
  TIGRFAM: Thiolase; KEGG: fri:FraEuI1c_4549 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Psed_1556
symbol: Psed_1556
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_0311 NADPH-dependent 2,4-dienoyl-CoA reductase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Psed_1558
symbol: Psed_1558
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function DUF125, transmembrane; KEGG: bcv:Bcav_2681 protein of unknown function DUF125 transmembrane.


ensembl_gene_id: Psed_1559
symbol: Psed_1559
gene_biotype: protein_coding
description:
  KEGG: fre:Franean1_6494 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain.


ensembl_gene_id: Psed_1561
symbol: Psed_1561
gene_biotype: protein_coding
description:
  TIGRFAM: Competence-induced protein CinA; CinA, C-terminal; PFAM: CinA, C-terminal; Molybdopterin binding; KEGG: mkm:Mkms_2751 competence damage-inducible protein A; SMART: Molybdopterin binding; Belongs to the CinA family.


ensembl_gene_id: Psed_1563
symbol: Psed_1563
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_0390 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal.


ensembl_gene_id: Psed_1565
symbol: Psed_1565
gene_biotype: protein_coding
description:
  TIGRFAM: Protocatechuate 3,4-dioxygenase, beta subunit; KEGG: amd:AMED_1860 protocatechuate 3,4-dioxygenase, beta subunit; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal.


ensembl_gene_id: Psed_1566
symbol: Psed_1566
gene_biotype: protein_coding
description:
  TIGRFAM: Protocatechuate 3,4-dioxygenase, alpha subunit; KEGG: svi:Svir_13020 protocatechuate 3,4-dioxygenase, alpha subunit; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal.


ensembl_gene_id: Psed_1568
symbol: Psed_1568
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sco:SCO0241 transcriptional regulator.


ensembl_gene_id: Psed_1569
symbol: Psed_1569
gene_biotype: protein_coding
description:
  PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: kfl:Kfla_5811 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Psed_1572
symbol: Psed_1572
gene_biotype: protein_coding
description:
  PFAM: Glycoside hydrolase, family 3, N-terminal; KEGG: svi:Svir_01720 beta-glucosidase-like glycosyl hydrolase.


ensembl_gene_id: Psed_1573
symbol: Psed_1573
gene_biotype: protein_coding
description:
  SMART: Biotin carboxylase, C-terminal; manually curated; KEGG: gob:Gobs_2423 carbamoyl-phosphate synthase L chain ATP-binding protein; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; Carboxyl transferase.


ensembl_gene_id: Psed_1576
symbol: Psed_1576
gene_biotype: protein_coding
description:
  KEGG: fri:FraEuI1c_6672 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain.


ensembl_gene_id: Psed_1577
symbol: Psed_1577
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: fal:FRAAL3816 hypothetical protein.


ensembl_gene_id: Psed_1579
symbol: Psed_1579
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: fal:FRAAL3795 TetR family transcriptional regulator.


ensembl_gene_id: Psed_1580
symbol: Psed_1580
gene_biotype: protein_coding
description:
  PFAM: Major facilitator superfamily MFS-1; KEGG: sro:Sros_7073 arabinose efflux permease-like protein.


ensembl_gene_id: Psed_1582
symbol: Psed_1582
gene_biotype: protein_coding
description:
  PFAM: Excalibur calcium-binding domain; KEGG: dgr:Dgri_GH10507 GH10507 gene product from transcript GH10507-RA.


ensembl_gene_id: Psed_1583
symbol: Psed_1583
gene_biotype: protein_coding
description:
  Putative F420-dependent enzyme; KEGG: kfl:Kfla_5151 pyridoxamine 5'-phosphate oxidase-related FMN-binding protein; TIGRFAM: F420-binding domain, putative; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain.


ensembl_gene_id: Psed_1584
symbol: pfkA
gene_biotype: protein_coding
description:
  6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. PPi-dependent PFK group II subfamily. Atypical ATP-dependent clade 'X' sub-subfamily.


ensembl_gene_id: Psed_1586
symbol: Psed_1586
gene_biotype: protein_coding
description:
  PFAM: Membrane protein of unknown function; SNARE associated Golgi protein; KEGG: amd:AMED_1322 hypothetical protein.


ensembl_gene_id: Psed_1591
symbol: Psed_1591
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_6340 trypsin-like serine protease; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF.


ensembl_gene_id: Psed_1593
symbol: Psed_1593
gene_biotype: protein_coding
description:
  Putative F420-dependent enzyme; KEGG: mbt:JTY_1895 hypothetical protein; TIGRFAM: F420-binding domain, putative; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain.


ensembl_gene_id: Psed_1594
symbol: Psed_1594
gene_biotype: protein_coding
description:
  Protein of unknown function UPF0016; PFAM: Uncharacterised protein family UPF0016; KEGG: ami:Amir_2448 protein of unknown function UPF0016.


ensembl_gene_id: Psed_1597
symbol: Psed_1597
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: msm:MSMEG_0343 TetR-family protein transcriptional regulator.


ensembl_gene_id: Psed_1598
symbol: Psed_1598
gene_biotype: protein_coding
description:
  Butyryl-CoA dehydrogenase; KEGG: fal:FRAAL1666 putative acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain.


ensembl_gene_id: Psed_1600
symbol: Psed_1600
gene_biotype: protein_coding
description:
  PFAM: Aminoglycoside phosphotransferase; KEGG: hne:HNE_1989 phosphotransferase enzyme family protein.


ensembl_gene_id: Psed_1603
symbol: Psed_1603
gene_biotype: protein_coding
description:
  Methylcrotonoyl-CoA carboxylase; KEGG: mva:Mvan_0346 carboxyl transferase; PFAM: Carboxyl transferase.


ensembl_gene_id: Psed_1604
symbol: Psed_1604
gene_biotype: protein_coding
description:
  Methylcrotonoyl-CoA carboxylase; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; KEGG: mva:Mvan_0345 carbamoyl-phosphate synthase L chain, ATP-binding; SMART: Biotin carboxylase, C-terminal.


ensembl_gene_id: Psed_1609
symbol: Psed_1609
gene_biotype: protein_coding
description:
  KEGG: mgi:Mflv_4597 wyosine base formation; TIGRFAM: Conserved hypothetical protein CHP03084; Conserved hypothetical protein CHP03083, actinobacterial-type; PFAM: Wyosine base formation.


ensembl_gene_id: Psed_1614
symbol: Psed_1614
gene_biotype: protein_coding
description:
  KEGG: bfa:Bfae_09180 cell envelope-related function transcriptional attenuator common domain; TIGRFAM: Cell envelope-related transcriptional attenuator; PFAM: Cell envelope-related transcriptional attenuator.


ensembl_gene_id: Psed_1615
symbol: Psed_1615
gene_biotype: protein_coding
description:
  KEGG: afw:Anae109_2271 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00268; PFAM: Asparagine synthase.


ensembl_gene_id: Psed_1616
symbol: Psed_1616
gene_biotype: protein_coding
description:
  Protein of unknown function DUF111; PFAM: Uncharacterised protein family UPF0272; Phosphoribosylaminoimidazole carboxylase, core; KEGG: cai:Caci_4916 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase.


ensembl_gene_id: Psed_1619
symbol: Psed_1619
gene_biotype: protein_coding
description:
  KEGG: cwo:Cwoe_0088 phosphosulfolactate synthase; PFAM: (2R)-phospho-3-sulpholactate synthase, ComA.


ensembl_gene_id: Psed_1622
symbol: Psed_1622
gene_biotype: protein_coding
description:
  1-aminocyclopropane-1-carboxylate deaminase; KEGG: nca:Noca_4819 D-cysteine desulfhydrase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit.


ensembl_gene_id: Psed_1623
symbol: Psed_1623
gene_biotype: protein_coding
description:
  TIGRFAM: Argininosuccinate lyase; KEGG: nca:Noca_4820 argininosuccinate lyase; PFAM: Lyase 1, N-terminal; Belongs to the lyase 1 family. Argininosuccinate lyase subfamily.


ensembl_gene_id: Psed_1624
symbol: Psed_1624
gene_biotype: protein_coding
description:
  CoA-disulfide reductase; KEGG: chl:Chy400_3865 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation.


ensembl_gene_id: Psed_1627
symbol: Psed_1627
gene_biotype: protein_coding
description:
  PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: azc:AZC_0070 putative histone acetyltransferase.


ensembl_gene_id: Psed_1628
symbol: Psed_1628
gene_biotype: protein_coding
description:
  KEGG: tbi:Tbis_2669 winged helix family transcriptional regulator ATPase; PFAM: Signal transduction response regulator, C-terminal; Bacterial transcriptional activator domain; ATPase domain, prokaryote; Tetratricopeptide TPR-1; SMART: Signal transduction response regulator, C-terminal; Tetratricopeptide repeat.


ensembl_gene_id: Psed_1630
symbol: Psed_1630
gene_biotype: protein_coding
description:
  TIGRFAM: Nitrile hydratase, alpha subunit; KEGG: pva:Pvag_pPag20175 putative nitrile hydratase alpha subunit; PFAM: Nitrile hydratase, alpha subunit/Thiocyanate hydrolase, gamma subunit.


ensembl_gene_id: Psed_1632
symbol: Psed_1632
gene_biotype: protein_coding
description:
  KEGG: nml:Namu_5382 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR.


ensembl_gene_id: Psed_1634
symbol: Psed_1634
gene_biotype: protein_coding
description:
  KEGG: gob:Gobs_0281 putative phytochrome sensor protein; PFAM: Signal transduction response regulator, C-terminal; GAF; SMART: Signal transduction response regulator, C-terminal.


ensembl_gene_id: Psed_1635
symbol: Psed_1635
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_2381 response regulator, two-component system; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain.


ensembl_gene_id: Psed_1636
symbol: Psed_1636
gene_biotype: protein_coding
description:
  Cupin 2 conserved barrel domain protein; KEGG: bph:Bphy_6084 XRE family transcriptional regulator; PFAM: Cupin 2, conserved barrel; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3.


ensembl_gene_id: Psed_1637
symbol: Psed_1637
gene_biotype: protein_coding
description:
  PFAM: Ketopantoate reductase ApbA/PanE, N-terminal; Ketopantoate reductase ApbA/PanE, C-terminal; KEGG: bcv:Bcav_4029 2-dehydropantoate 2-reductase.


ensembl_gene_id: Psed_1642
symbol: Psed_1642
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function DUF395, YeeE/YedE; KEGG: sen:SACE_1782 protein of unknown function DUF395, YeeE/YedE.


ensembl_gene_id: Psed_1644
symbol: pfp
gene_biotype: protein_coding
description:
  6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP- PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions.


ensembl_gene_id: Psed_1645
symbol: clpP
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.


ensembl_gene_id: Psed_1650
symbol: Psed_1650
gene_biotype: protein_coding
description:
  KEGG: sma:SAV_7424 ECF subfamily RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2.


ensembl_gene_id: Psed_1658
symbol: Psed_1658
gene_biotype: protein_coding
description:
  Trimethylamine-N-oxide reductase (cytochrome c); PFAM: Molydopterin dinucleotide-binding domain; Molybdopterin oxidoreductase, Fe4S4 domain; Molybdopterin oxidoreductase; KEGG: rsl:RPSI07_2642 putative molybdopterin oxidoreductase; putative nitrate reductase; SMART: Molybdopterin oxidoreductase, Fe4S4 domain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: Psed_1659
symbol: Psed_1659
gene_biotype: protein_coding
description:
  KEGG: rop:ROP_58480 putative AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain.


ensembl_gene_id: Psed_1662
symbol: argS
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_6300 arginyl-tRNA synthetase; TIGRFAM: Arginyl-tRNA synthetase, class Ic; HAMAP: Arginyl-tRNA synthetase, class Ic.


ensembl_gene_id: Psed_1663
symbol: lysA
gene_biotype: protein_coding
description:
  Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.


ensembl_gene_id: Psed_1664
symbol: Psed_1664
gene_biotype: protein_coding
description:
  PFAM: Homoserine dehydrogenase, catalytic; Aspartate/homoserine dehydrogenase, NAD-binding; Amino acid-binding ACT; KEGG: amd:AMED_7795 homoserine dehydrogenase.


ensembl_gene_id: Psed_1665
symbol: Psed_1665
gene_biotype: protein_coding
description:
  Threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine.


ensembl_gene_id: Psed_1666
symbol: thrB
gene_biotype: protein_coding
description:
  Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.


ensembl_gene_id: Psed_1667
symbol: rho
gene_biotype: protein_coding
description:
  Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.


ensembl_gene_id: Psed_1669
symbol: prfA
gene_biotype: protein_coding
description:
  Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.


ensembl_gene_id: Psed_1670
symbol: prmC
gene_biotype: protein_coding
description:
  protein-(glutamine-N5) methyltransferase, release factor-specific; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.


ensembl_gene_id: Psed_1671
symbol: Psed_1671
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_6146 SUA5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: Sua5/YciO/YrdC, N-terminal; Belongs to the SUA5 family.


ensembl_gene_id: Psed_1673
symbol: Psed_1673
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: tcu:Tcur_4146 TetR family transcriptional regulator.


ensembl_gene_id: Psed_1674
symbol: glyA
gene_biotype: protein_coding
description:
  Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.


ensembl_gene_id: Psed_1675
symbol: Psed_1675
gene_biotype: protein_coding
description:
  PFAM: Glycosyl transferase, family 4; KEGG: sen:SACE_6288 undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase.


ensembl_gene_id: Psed_1678
symbol: atpB
gene_biotype: protein_coding
description:
  ATP synthase subunit a; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.


ensembl_gene_id: Psed_1679
symbol: atpE
gene_biotype: protein_coding
description:
  ATP synthase subunit c; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: Psed_1680
symbol: atpF
gene_biotype: protein_coding
description:
  ATP synthase subunit b; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.


ensembl_gene_id: Psed_1682
symbol: atpH
gene_biotype: protein_coding
description:
  ATP synthase subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family.


ensembl_gene_id: Psed_1683
symbol: atpA
gene_biotype: protein_coding
description:
  ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.


ensembl_gene_id: Psed_1684
symbol: atpG
gene_biotype: protein_coding
description:
  ATP synthase gamma chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.


ensembl_gene_id: Psed_1685
symbol: atpD
gene_biotype: protein_coding
description:
  ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.


ensembl_gene_id: Psed_1686
symbol: atpC
gene_biotype: protein_coding
description:
  ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane.


ensembl_gene_id: Psed_1688
symbol: Psed_1688
gene_biotype: protein_coding
description:
  ATP/cobalamin adenosyltransferase; TIGRFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, PduO-type, N-terminal; KEGG: fal:FRAAL5927 putative adenosylcobalamin-dependent diol dehydratase gamma subunit; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, EutT/PduO type.


ensembl_gene_id: Psed_1689
symbol: murA
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.


ensembl_gene_id: Psed_1691
symbol: Psed_1691
gene_biotype: protein_coding
description:
  TIGRFAM: Methylmalonyl-CoA mutase, alpha chain, catalytic; Methylmalonyl-CoA mutase, C-terminal; KEGG: gob:Gobs_4128 methylmalonyl-CoA mutase large subunit; PFAM: Methylmalonyl-CoA mutase, alpha/beta chain, catalytic; Cobalamin (vitamin B12)-binding.


ensembl_gene_id: Psed_1692
symbol: Psed_1692
gene_biotype: protein_coding
description:
  PFAM: Ribulose bisphosphate carboxylase, large subunit, C-terminal; KEGG: sen:SACE_3078 hypothetical protein.


ensembl_gene_id: Psed_1693
symbol: Psed_1693
gene_biotype: protein_coding
description:
  TIGRFAM: Ectoine/hydroxyEctoine ABC transporter solute-binding protein; Twin-arginine translocation pathway, signal sequence; PFAM: Extracellular solute-binding protein, family 3; KEGG: svi:Svir_29490 ectoine/hydroxyectoine ABC transporter solute-binding protein; SMART: Extracellular solute-binding protein, family 3.


ensembl_gene_id: Psed_1694
symbol: Psed_1694
gene_biotype: protein_coding
description:
  KEGG: svi:Svir_29480 amino acid ABC transporter membrane protein; TIGRFAM: Ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Psed_1695
symbol: Psed_1695
gene_biotype: protein_coding
description:
  KEGG: svi:Svir_29470 amino acid ABC transporter membrane protein; TIGRFAM: Ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Psed_1696
symbol: Psed_1696
gene_biotype: protein_coding
description:
  SMART: ATPase, AAA+ type, core; TIGRFAM: Ectoine/hydroxyectoine ABC transporter, ATP-binding protein; KEGG: svi:Svir_29460 amino acid ABC transporter ATP-binding protein; PFAM: ABC transporter-like.


ensembl_gene_id: Psed_1697
symbol: Psed_1697
gene_biotype: protein_coding
description:
  ABC-type transporter, periplasmic subunit family 3; KEGG: svi:Svir_29490 ectoine/hydroxyectoine ABC transporter solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3.


ensembl_gene_id: Psed_1699
symbol: Psed_1699
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: nda:Ndas_0675 transcriptional regulator, TetR family.


ensembl_gene_id: Psed_1702
symbol: Psed_1702
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_3243 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain.


ensembl_gene_id: Psed_1704
symbol: Psed_1704
gene_biotype: protein_coding
description:
  Transcriptional regulator; Manually curated; KEGG: svi:Svir_36430 predicted transcriptional regulator.


ensembl_gene_id: Psed_1706
symbol: Psed_1706
gene_biotype: protein_coding
description:
  KEGG: fri:FraEuI1c_4888 transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal.


ensembl_gene_id: Psed_1707
symbol: nucS
gene_biotype: protein_coding
description:
  UPF0286 protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.


ensembl_gene_id: Psed_1708
symbol: Psed_1708
gene_biotype: protein_coding
description:
  KEGG: gob:Gobs_1833 alcohol dehydrogenase zinc-binding domain-containing protein; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; SMART: Polyketide synthase, enoylreductase.


ensembl_gene_id: Psed_1709
symbol: Psed_1709
gene_biotype: protein_coding
description:
  PFAM: Aldehyde dehydrogenase domain; KEGG: sen:SACE_6249 aldehyde dehydrogenase (NAD+); Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: Psed_1710
symbol: Psed_1710
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_7745 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal.


ensembl_gene_id: Psed_1713
symbol: Psed_1713
gene_biotype: protein_coding
description:
  TIGRFAM: Crotonyl-CoA reductase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: kfl:Kfla_4989 crotonyl-CoA reductase; SMART: Polyketide synthase, enoylreductase.


ensembl_gene_id: Psed_1714
symbol: Psed_1714
gene_biotype: protein_coding
description:
  methylmalonyl-CoA epimerase; KEGG: req:REQ_17690 glyoxalase family protein; TIGRFAM: Methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Psed_1715
symbol: Psed_1715
gene_biotype: protein_coding
description:
  TIGRFAM: Thiolase; KEGG: ami:Amir_6104 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Psed_1718
symbol: Psed_1718
gene_biotype: protein_coding
description:
  Regulatory protein MarR; KEGG: sen:SACE_6221 MarR-transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR.


ensembl_gene_id: Psed_1725
symbol: glgB
gene_biotype: protein_coding
description:
  1,4-alpha-glucan-branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.


ensembl_gene_id: Psed_1727
symbol: Psed_1727
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: fra:Francci3_4183 sigma-24; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Psed_1729
symbol: Psed_1729
gene_biotype: protein_coding
description:
  Trehalose synthase; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; TIGRFAM: Trehalose synthase/alpha-amylase, N-terminal; KEGG: ami:Amir_6073 trehalose synthase; PFAM: Glycosyl hydrolase, family 13, catalytic domain.


ensembl_gene_id: Psed_1730
symbol: glgE
gene_biotype: protein_coding
description:
  Alpha amylase catalytic region; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.


ensembl_gene_id: Psed_1731
symbol: Psed_1731
gene_biotype: protein_coding
description:
  TIGRFAM: Alpha-glucan phosphorylase; KEGG: ami:Amir_6071 alpha-glucan phosphorylase; PFAM: Glycosyl transferase, family 35.


ensembl_gene_id: Psed_1732
symbol: Psed_1732
gene_biotype: protein_coding
description:
  TIGRFAM: Regulatory protein, FmdB, putative; PFAM: Regulatory protein, FmdB, putative; KEGG: sma:SAV_5811 hypothetical protein; SMART: Regulatory protein, FmdB, putative.


ensembl_gene_id: Psed_1733
symbol: Psed_1733
gene_biotype: protein_coding
description:
  Glycogen debranching enzyme GlgX; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; TIGRFAM: Glycogen debranching enzyme; KEGG: ami:Amir_6067 glycogen debranching enzyme GlgX; PFAM: Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic domain; Belongs to the glycosyl hydrolase 13 family.


ensembl_gene_id: Psed_1734
symbol: Psed_1734
gene_biotype: protein_coding
description:
  ABC transporter related protein; KEGG: svi:Svir_28470 ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_1737
symbol: Psed_1737
gene_biotype: protein_coding
description:
  Putative signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; KEGG: amd:AMED_9311 two-component system histidine kinase.


ensembl_gene_id: Psed_1738
symbol: Psed_1738
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; KEGG: svi:Svir_39510 response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal.


ensembl_gene_id: Psed_1739
symbol: Psed_1739
gene_biotype: protein_coding
description:
  KEGG: kfl:Kfla_4709 two component transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal.


ensembl_gene_id: Psed_1742
symbol: Psed_1742
gene_biotype: protein_coding
description:
  PFAM: Glycosyl transferase, group 1; Starch synthase, catalytic domain; KEGG: ami:Amir_6058 glycosyl transferase group 1.


ensembl_gene_id: Psed_1743
symbol: Psed_1743
gene_biotype: protein_coding
description:
  PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: fre:Franean1_4105 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Psed_1744
symbol: Psed_1744
gene_biotype: protein_coding
description:
  TIGRFAM: Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A; KEGG: fal:FRAAL4799 NtaA/SnaA/SoxA family monooxygenase.


ensembl_gene_id: Psed_1745
symbol: Psed_1745
gene_biotype: protein_coding
description:
  ABC-type transporter, periplasmic subunit; PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: rop:ROP_14350 putative ABC transporter substrate-binding protein.


ensembl_gene_id: Psed_1746
symbol: Psed_1746
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rha:RHA1_ro01762 ABC peptide transporter, permease component.


ensembl_gene_id: Psed_1747
symbol: Psed_1747
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rha:RHA1_ro01761 ABC peptide transporter, permease component.


ensembl_gene_id: Psed_1748
symbol: Psed_1748
gene_biotype: protein_coding
description:
  Nickel-transporting ATPase; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: rop:ROP_14320 putative ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_1749
symbol: Psed_1749
gene_biotype: protein_coding
description:
  Nickel-transporting ATPase; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: fal:FRAAL4794 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Psed_1751
symbol: Psed_1751
gene_biotype: protein_coding
description:
  PFAM: Cupin 2, conserved barrel; KEGG: tcu:Tcur_1382 cupin 2 conserved barrel domain-containing protein.


ensembl_gene_id: Psed_1754
symbol: Psed_1754
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function DUF1957; Glycoside hydrolase, family 57, N-terminal; KEGG: ami:Amir_6057 glycoside hydrolase family 57; Belongs to the glycosyl hydrolase 57 family.


ensembl_gene_id: Psed_1756
symbol: Psed_1756
gene_biotype: protein_coding
description:
  Helix-turn-helix domain-containing protein AraC type; KEGG: sus:Acid_4192 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain.


ensembl_gene_id: Psed_1757
symbol: alc
gene_biotype: protein_coding
description:
  PFAM: Allantoicase domain; TIGRFAM: Allantoicase; HAMAP: Allantoicase; KEGG: rop:ROP_44360 allantoicase; Belongs to the allantoicase family.


ensembl_gene_id: Psed_1760
symbol: Psed_1760
gene_biotype: protein_coding
description:
  KEGG: gob:Gobs_3387 xanthine dehydrogenase subunit D; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead.


ensembl_gene_id: Psed_1761
symbol: Psed_1761
gene_biotype: protein_coding
description:
  S-adenosylhomocysteine deaminase; KEGG: nml:Namu_0260 hydroxydechloroatrazine ethylaminohydrolase; PFAM: Amidohydrolase 1.


ensembl_gene_id: Psed_1762
symbol: Psed_1762
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_1920 carbon-monoxide dehydrogenase small subunit; PFAM: [2Fe-2S]-binding; Ferredoxin.


ensembl_gene_id: Psed_1763
symbol: Psed_1763
gene_biotype: protein_coding
description:
  PFAM: Molybdopterin dehydrogenase, FAD-binding; KEGG: gob:Gobs_3389 molybdopterin dehydrogenase FAD-binding protein.


ensembl_gene_id: Psed_1766
symbol: Psed_1766
gene_biotype: protein_coding
description:
  Urate oxidase; Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.


ensembl_gene_id: Psed_1767
symbol: Psed_1767
gene_biotype: protein_coding
description:
  Hydroxyisourate hydrolase; KEGG: fra:Francci3_0842 transthyretin; TIGRFAM: Hydroxyisourate hydrolase; PFAM: Transthyretin/hydroxyisourate hydrolase; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.


ensembl_gene_id: Psed_1768
symbol: Psed_1768
gene_biotype: protein_coding
description:
  OHCU decarboxylase; KEGG: kra:Krad_2069 hypothetical protein; TIGRFAM: 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 2; PFAM: Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase.


ensembl_gene_id: Psed_1769
symbol: Psed_1769
gene_biotype: protein_coding
description:
  KEGG: nml:Namu_0261 xanthine permease; TIGRFAM: Xanthine permease; Xanthine/uracil permease; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 1; PFAM: Xanthine/uracil/vitamin C permease; Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase.


ensembl_gene_id: Psed_1771
symbol: Psed_1771
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_1653 electron transfer flavoprotein beta subunit; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal.


ensembl_gene_id: Psed_1772
symbol: Psed_1772
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_6196 electron transfer flavoprotein, alpha subunit; PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal.


ensembl_gene_id: Psed_1774
symbol: Psed_1774
gene_biotype: protein_coding
description:
  KEGG: sma:SAV_7311 1-acylglycerol-3-phosphate O-acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase.


ensembl_gene_id: Psed_1776
symbol: mnmA
gene_biotype: protein_coding
description:
  tRNA-specific 2-thiouridylase mnmA; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.


ensembl_gene_id: Psed_1780
symbol: Psed_1780
gene_biotype: protein_coding
description:
  Propanoyl-CoA C-acyltransferase; KEGG: bts:Btus_1990 beta-ketoacyl synthase; PFAM: Thiolase, C-terminal; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Psed_1781
symbol: Psed_1781
gene_biotype: protein_coding
description:
  KEGG: fra:Francci3_2247 butyryl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal.


ensembl_gene_id: Psed_1782
symbol: Psed_1782
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: swi:Swit_0760 TetR family transcriptional regulator.


ensembl_gene_id: Psed_1783
symbol: Psed_1783
gene_biotype: protein_coding
description:
  PFAM: Methionine synthase, vitamin-B12 independent; KEGG: svi:Svir_08670 cobalamin-independent methionine synthase.


ensembl_gene_id: Psed_1785
symbol: Psed_1785
gene_biotype: protein_coding
description:
  KEGG: hoh:Hoch_1789 serine--pyruvate transaminase; PFAM: Aminotransferase, class V/Cysteine desulfurase.


ensembl_gene_id: Psed_1788
symbol: ligA
gene_biotype: protein_coding
description:
  DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily.


ensembl_gene_id: Psed_1790
symbol: Psed_1790
gene_biotype: protein_coding
description:
  PFAM: Ferredoxin; Oxidoreductase, FAD-binding domain; Oxidoreductase FAD/NAD(P)-binding; KEGG: stp:Strop_2076 oxidoreductase FAD-binding subunit.


ensembl_gene_id: Psed_1791
symbol: Psed_1791
gene_biotype: protein_coding
description:
  PFAM: Fatty acid desaturase, type 1; KEGG: fal:FRAAL6454 linoleoyl-CoA desaturase (delta(6)-desaturase).


ensembl_gene_id: Psed_1792
symbol: Psed_1792
gene_biotype: protein_coding
description:
  Regulatory protein LysR; PFAM: HTH transcriptional regulator, LysR; KEGG: cwo:Cwoe_4185 transcriptional regulator, CdaR.


ensembl_gene_id: Psed_1794
symbol: gatC
gene_biotype: protein_coding
description:
  Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.


ensembl_gene_id: Psed_1795
symbol: gatA
gene_biotype: protein_coding
description:
  Glutamyl-tRNA(Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).


ensembl_gene_id: Psed_1796
symbol: gatB
gene_biotype: protein_coding
description:
  Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.


ensembl_gene_id: Psed_1797
symbol: Psed_1797
gene_biotype: protein_coding
description:
  F420-dependent oxidoreductase; KEGG: ami:Amir_2715 luciferase-like monooxygenase; TIGRFAM: Luciferase-like, F420-dependent oxidoreductase, MSMEG4879, predicted; PFAM: Luciferase-like, subgroup.


ensembl_gene_id: Psed_1799
symbol: Psed_1799
gene_biotype: protein_coding
description:
  SMP-30/Gluconolaconase/LRE-like region-containing protein; PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: rha:RHA1_ro06693 5-valerolactone hydrolase.


ensembl_gene_id: Psed_1800
symbol: Psed_1800
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_2895 betaine-aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: Psed_1802
symbol: Psed_1802
gene_biotype: protein_coding
description:
  Manually curated; PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: nda:Ndas_3659 transcriptional regulator, LacI family; SMART: HTH transcriptional regulator, LacI.


ensembl_gene_id: Psed_1806
symbol: Psed_1806
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: axy:AXYL_01704 hypothetical protein.


ensembl_gene_id: Psed_1809
symbol: Psed_1809
gene_biotype: protein_coding
description:
  KEGG: rha:RHA1_ro02283 formyl-CoA transferase; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.


ensembl_gene_id: Psed_1814
symbol: Psed_1814
gene_biotype: protein_coding
description:
  PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: ami:Amir_6027 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding.


ensembl_gene_id: Psed_1817
symbol: Psed_1817
gene_biotype: protein_coding
description:
  PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: rop:ROP_36610 hypothetical protein.


ensembl_gene_id: Psed_1818
symbol: ilvD
gene_biotype: protein_coding
description:
  PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; TIGRFAM: Dihydroxy-acid dehydratase; HAMAP: Dihydroxy-acid dehydratase; KEGG: amd:AMED_1683 dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.


ensembl_gene_id: Psed_1820
symbol: Psed_1820
gene_biotype: protein_coding
description:
  TIGRFAM: Acetolactate synthase, large subunit, biosynthetic; KEGG: ami:Amir_6021 acetolactate synthase 1 catalytic subunit; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding.


ensembl_gene_id: Psed_1821
symbol: Psed_1821
gene_biotype: protein_coding
description:
  KEGG: svi:Svir_08880 acetolactate synthase 3 regulatory subunit; TIGRFAM: Acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit, C-terminal; Amino acid-binding ACT.


ensembl_gene_id: Psed_1822
symbol: ilvC
gene_biotype: protein_coding
description:
  Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.


ensembl_gene_id: Psed_1823
symbol: Psed_1823
gene_biotype: protein_coding
description:
  KEGG: req:REQ_33170 fmn-dependent monooxygenase; TIGRFAM: Luciferase family oxidoreductase, group 1; PFAM: Luciferase-like, subgroup.


ensembl_gene_id: Psed_1825
symbol: Psed_1825
gene_biotype: protein_coding
description:
  TIGRFAM: D-3-phosphoglycerate dehydrogenase; KEGG: sen:SACE_6155 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; Amino acid-binding ACT.


ensembl_gene_id: Psed_1826
symbol: leuB
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. Belongs to the isocitrate and isopropylmalate dehydrogenases family. LeuB type 2 subfamily.


ensembl_gene_id: Psed_1827
symbol: Psed_1827
gene_biotype: protein_coding
description:
  KEGG: bbt:BBta_5960 hypothetical protein; TIGRFAM: Ethyl tert-butyl ether degradation EthD; PFAM: Ethyl tert-butyl ether degradation EthD.


ensembl_gene_id: Psed_1829
symbol: gltX
gene_biotype: protein_coding
description:
  glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.


ensembl_gene_id: Psed_1831
symbol: Psed_1831
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_6007 transcriptional regulator, IclR family; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal.


ensembl_gene_id: Psed_1832
symbol: leuC
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.


ensembl_gene_id: Psed_1833
symbol: leuD
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.


ensembl_gene_id: Psed_1834
symbol: Psed_1834
gene_biotype: protein_coding
description:
  Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.


ensembl_gene_id: Psed_1835
symbol: Psed_1835
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_1727 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1; Belongs to the Nudix hydrolase family.


ensembl_gene_id: Psed_1836
symbol: ppk
gene_biotype: protein_coding
description:
  Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.


ensembl_gene_id: Psed_1837
symbol: fbiD
gene_biotype: protein_coding
description:
  2-phospho-L-lactate guanylyltransferase CofC; Guanylyltransferase that catalyzes the activation of phosphoenolpyruvate (PEP) as enolpyruvoyl-2-diphospho-5'-guanosine, via the condensation of PEP with GTP. It is involved in the biosynthesis of coenzyme F420, a hydride carrier cofactor.


ensembl_gene_id: Psed_1838
symbol: Psed_1838
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_5999 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase.


ensembl_gene_id: Psed_1839
symbol: gpsA
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_5998 glycerol-3-phosphate dehydrogenase (NAD(P)(+)); HAMAP: Glycerol-3-phosphate dehydrogenase, NAD-dependent; PFAM: Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal; Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: Psed_1840
symbol: Psed_1840
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_5997 cystathionine gamma-lyase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme.


ensembl_gene_id: Psed_1844
symbol: Psed_1844
gene_biotype: protein_coding
description:
  TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: sen:SACE_3176 undecaprenyl-phosphate galactose phosphotransferase; PFAM: Bacterial sugar transferase.


ensembl_gene_id: Psed_1845
symbol: Psed_1845
gene_biotype: protein_coding
description:
  KEGG: rop:ROP_57920 glutamate-1-semialdehyde 2,1-aminomutase; PFAM: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Psed_1848
symbol: Psed_1848
gene_biotype: protein_coding
description:
  TIGRFAM: Nucleotide sugar dehydrogenase; KEGG: sro:Sros_0655 GDP-mannose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal.


ensembl_gene_id: Psed_1849
symbol: Psed_1849
gene_biotype: protein_coding
description:
  TIGRFAM: Asparagine synthase, glutamine-hydrolyzing; KEGG: sco:SCO0386 asparagine synthetase; PFAM: Asparagine synthase; Glycosyl transferase, group 1; Glutamine amidotransferase, class-II.


ensembl_gene_id: Psed_1850
symbol: Psed_1850
gene_biotype: protein_coding
description:
  Oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Alcohol dehydrogenase, C-terminal; Oxidoreductase, C-terminal; KEGG: amd:AMED_0552 oxidoreductase.


ensembl_gene_id: Psed_1862
symbol: Psed_1862
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function DUF477; KEGG: svi:Svir_11860 protein of unknown function (DUF477).


ensembl_gene_id: Psed_1863
symbol: Psed_1863
gene_biotype: protein_coding
description:
  Histidine kinase; KEGG: tfu:Tfu_2960 ATP-binding region, ATPase-like; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain.


ensembl_gene_id: Psed_1867
symbol: Psed_1867
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; KEGG: amd:AMED_6941 two-component system response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal.


ensembl_gene_id: Psed_1868
symbol: Psed_1868
gene_biotype: protein_coding
description:
  Histidine kinase; KEGG: amd:AMED_6942 two-component system histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain.


ensembl_gene_id: Psed_1875
symbol: Psed_1875
gene_biotype: protein_coding
description:
  dTDP-glucose 4,6-dehydratase; KEGG: chl:Chy400_1771 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase.


ensembl_gene_id: Psed_1879
symbol: Psed_1879
gene_biotype: protein_coding
description:
  TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: gob:Gobs_0418 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase.


ensembl_gene_id: Psed_1882
symbol: Psed_1882
gene_biotype: protein_coding
description:
  PFAM: Polysaccharide biosynthesis protein; KEGG: rop:ROP_57940 putative polysaccharide biosynthesis protein.


ensembl_gene_id: Psed_1886
symbol: Psed_1886
gene_biotype: protein_coding
description:
  PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: ami:Amir_1737 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: Psed_1887
symbol: Psed_1887
gene_biotype: protein_coding
description:
  PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: cai:Caci_8499 glutamine--scyllo-inositol transaminase; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: Psed_1888
symbol: Psed_1888
gene_biotype: protein_coding
description:
  Oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: ami:Amir_1731 oxidoreductase domain protein.


ensembl_gene_id: Psed_1889
symbol: Psed_1889
gene_biotype: protein_coding
description:
  UDP-glucose 4-epimerase; KEGG: cwo:Cwoe_5315 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase.


ensembl_gene_id: Psed_1890
symbol: Psed_1890
gene_biotype: protein_coding
description:
  Phosphoesterase PA-phosphatase related protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; KEGG: scb:SCAB_23551 integral membrane protein.


ensembl_gene_id: Psed_1891
symbol: Psed_1891
gene_biotype: protein_coding
description:
  TIGRFAM: Peptidase M1, aminopeptidase N actinomycete-type; KEGG: ami:Amir_1142 aminopeptidase N; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal.


ensembl_gene_id: Psed_1892
symbol: Psed_1892
gene_biotype: protein_coding
description:
  PFAM: C-methyltransferase; Methyltransferase hyptothetical; KEGG: gob:Gobs_0365 C-methyltransferase.


ensembl_gene_id: Psed_1893
symbol: Psed_1893
gene_biotype: protein_coding
description:
  KEGG: sro:Sros_0651 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase-related.


ensembl_gene_id: Psed_1894
symbol: Psed_1894
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; KEGG: sro:Sros_0638 nucleoside-diphosphate-sugar epimerase.


ensembl_gene_id: Psed_1896
symbol: Psed_1896
gene_biotype: protein_coding
description:
  PFAM: C-methyltransferase; Methyltransferase hyptothetical; Methyltransferase type 12; KEGG: sro:Sros_0635 methyltransferase, putative.


ensembl_gene_id: Psed_1898
symbol: Psed_1898
gene_biotype: protein_coding
description:
  KEGG: sno:Snov_2020 putative signal transduction protein with CBS domains; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core.


ensembl_gene_id: Psed_1899
symbol: Psed_1899
gene_biotype: protein_coding
description:
  PFAM: Aldehyde dehydrogenase domain; KEGG: sen:SACE_1341 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: Psed_1900
symbol: Psed_1900
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine-protein kinase-like domain; KEGG: nfa:nfa31920 putative serine/threonine protein kinase; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain.


ensembl_gene_id: Psed_1902
symbol: Psed_1902
gene_biotype: protein_coding
description:
  KEGG: sro:Sros_3531 asparagine synthase (glutamine-hydrolyzing); TIGRFAM: Asparagine synthase family amidotransferase; Asparagine synthase, glutamine-hydrolyzing; PFAM: Asparagine synthase; Glutamine amidotransferase, class-II.


ensembl_gene_id: Psed_1904
symbol: Psed_1904
gene_biotype: protein_coding
description:
  TIGRFAM: Haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2; KEGG: sti:Sthe_3243 haloacid dehalogenase, type II; PFAM: Haloacid dehalogenase-like hydrolase.


ensembl_gene_id: Psed_1906
symbol: Psed_1906
gene_biotype: protein_coding
description:
  Beta-lactamase domain protein; KEGG: sen:SACE_1347 metallo-beta-lactamase; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like.


ensembl_gene_id: Psed_1910
symbol: Psed_1910
gene_biotype: protein_coding
description:
  TIGRFAM: Ribose 5-phosphate isomerase, actinobacteria; Ribose/galactose isomerase; KEGG: gbr:Gbro_2041 ribose 5-phosphate isomerase; PFAM: Ribose/galactose isomerase.


ensembl_gene_id: Psed_1911
symbol: Psed_1911
gene_biotype: protein_coding
description:
  DNA-(apurinic or apyrimidinic site) lyase; PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; DNA glycosylase/AP lyase, catalytic domain; KEGG: sen:SACE_1351 formamidopyrimidine-DNA glycosylase; SMART: DNA glycosylase/AP lyase, catalytic domain; Belongs to the FPG family.


ensembl_gene_id: Psed_1918
symbol: Psed_1918
gene_biotype: protein_coding
description:
  KEGG: kfl:Kfla_1162 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-G type, actinobacteria; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2.


ensembl_gene_id: Psed_1919
symbol: Psed_1919
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function DUF899, thioredoxin-like; KEGG: cwo:Cwoe_4051 protein of unknown function DUF899 thioredoxin family protein.


ensembl_gene_id: Psed_1921
symbol: Psed_1921
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_3972 AraC family transcription regulator; PFAM: HTH transcriptional regulator, AraC; HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC type, DNA binding domain.


ensembl_gene_id: Psed_1923
symbol: Psed_1923
gene_biotype: protein_coding
description:
  TIGRFAM: Tryptophanyl-tRNA synthetase, class Ib; KEGG: apv:Apar_0653 tryptophanyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib.


ensembl_gene_id: Psed_1925
symbol: Psed_1925
gene_biotype: protein_coding
description:
  PFAM: HTH transcriptional regulator, LysR; KEGG: fri:FraEuI1c_3185 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Psed_1930
symbol: Psed_1930
gene_biotype: protein_coding
description:
  PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: mau:Micau_1997 bifunctional deaminase-reductase domain-containing protein.


ensembl_gene_id: Psed_1931
symbol: Psed_1931
gene_biotype: protein_coding
description:
  SMART: Helix-turn-helix, AraC type, DNA binding domain; KEGG: sna:Snas_2706 transcriptional regulator, AraC family.


ensembl_gene_id: Psed_1932
symbol: Psed_1932
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: req:REQ_47330 TetR family transcriptional regulator.


ensembl_gene_id: Psed_1933
symbol: Psed_1933
gene_biotype: protein_coding
description:
  Phosphonate-transporting ATPase; PFAM: ABC transporter-like; KEGG: rer:RER_51400 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_1934
symbol: Psed_1934
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: mau:Micau_3733 hypothetical protein.


ensembl_gene_id: Psed_1936
symbol: Psed_1936
gene_biotype: protein_coding
description:
  NADPH:quinone reductase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: sco:SCO7666 zinc-binding oxidoreductase (fragment); SMART: Polyketide synthase, enoylreductase.


ensembl_gene_id: Psed_1937
symbol: Psed_1937
gene_biotype: protein_coding
description:
  Metal dependent phosphohydrolase; TIGRFAM: Uncharacterised protein family HDIG; PFAM: Metal-dependent phosphohydrolase, HD subdomain; KEGG: rha:RHA1_ro07109 cyanamide hydratase; SMART: Metal-dependent phosphohydrolase, HD domain.


ensembl_gene_id: Psed_1938
symbol: Psed_1938
gene_biotype: protein_coding
description:
  ThiJ/PfpI domain-containing protein; KEGG: rha:RHA1_ro07108 AraC family transcriptional regulator; PFAM: ThiJ/PfpI; SMART: Helix-turn-helix, AraC type, DNA binding domain.


ensembl_gene_id: Psed_1942
symbol: lspA
gene_biotype: protein_coding
description:
  Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.


ensembl_gene_id: Psed_1943
symbol: Psed_1943
gene_biotype: protein_coding
description:
  Sterol 3-beta-glucosyltransferase; KEGG: cyn:Cyan7425_0057 glycosyl transferase family 28; PFAM: Glycosyl transferase, family 28.


ensembl_gene_id: Psed_1949
symbol: Psed_1949
gene_biotype: protein_coding
description:
  PFAM: CoA-transferase family III; KEGG: fri:FraEuI1c_2687 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.


ensembl_gene_id: Psed_1953
symbol: Psed_1953
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_9175 cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein.


ensembl_gene_id: Psed_1954
symbol: Psed_1954
gene_biotype: protein_coding
description:
  TIGRFAM: Glutamate synthase, NADH/NADPH, small subunit 1; KEGG: sen:SACE_3997 glutamate synthase, NADH/NADPH, small subunit 1; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Psed_1955
symbol: Psed_1955
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_3998 putative glutamate synthase(NADPH) large subunit; PFAM: Glutamate synthase, central-C; Glutamine amidotransferase, class-II; Glutamate synthase, central-N; Glutamate synthase, alpha subunit, C-terminal.


ensembl_gene_id: Psed_1959
symbol: Psed_1959
gene_biotype: protein_coding
description:
  KEGG: sgr:SGR_320 RNA polymerase ECF-subfamily sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2.


ensembl_gene_id: Psed_1960
symbol: Psed_1960
gene_biotype: protein_coding
description:
  CsbD family protein; PFAM: CsbD-like; KEGG: nml:Namu_0307 CsbD family protein; Belongs to the UPF0337 (CsbD) family.


ensembl_gene_id: Psed_1962
symbol: tig
gene_biotype: protein_coding
description:
  Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.


ensembl_gene_id: Psed_1965
symbol: clpX
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease ATP-binding subunit clpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.


ensembl_gene_id: Psed_1966
symbol: Psed_1966
gene_biotype: protein_coding
description:
  Formyl-CoA transferase; KEGG: fal:FRAAL3412 putative alpha-methylacyl-CoA racemase; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.


ensembl_gene_id: Psed_1971
symbol: Psed_1971
gene_biotype: protein_coding
description:
  KEGG: nda:Ndas_0831 putative F420-dependent enzyme; TIGRFAM: F420-binding domain, putative; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain.


ensembl_gene_id: Psed_1973
symbol: valS
gene_biotype: protein_coding
description:
  Valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.


ensembl_gene_id: Psed_1974
symbol: Psed_1974
gene_biotype: protein_coding
description:
  FolC bifunctional protein; TIGRFAM: Folylpolyglutamate synthetase; KEGG: rha:RHA1_ro01317 tetrahydrofolylpolyglutamate synthase; PFAM: Mur ligase, C-terminal; Mur ligase, central.


ensembl_gene_id: Psed_1977
symbol: ndk
gene_biotype: protein_coding
description:
  Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.


ensembl_gene_id: Psed_1978
symbol: Psed_1978
gene_biotype: protein_coding
description:
  Polyamine-transporting ATPase; PFAM: ABC transporter-like; KEGG: ami:Amir_1173 ABC transporter related; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_1984
symbol: Psed_1984
gene_biotype: protein_coding
description:
  Radical SAM domain protein; KEGG: sen:SACE_1403 putative Fe-S oxidoreductase; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: Psed_1985
symbol: Psed_1985
gene_biotype: protein_coding
description:
  PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: srt:Srot_2543 GCN5-related N-acetyltransferase.


ensembl_gene_id: Psed_1987
symbol: Psed_1987
gene_biotype: protein_coding
description:
  Ribonuclease, Rne/Rng family; TIGRFAM: Ribonuclease E/G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Translation initiation factor IF-2, N-terminal; Ribosomal protein S1, RNA-binding domain; KEGG: sen:SACE_1406 ribonuclease; SMART: RNA-binding domain, S1.


ensembl_gene_id: Psed_1988
symbol: rplU
gene_biotype: protein_coding
description:
  50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.


ensembl_gene_id: Psed_1989
symbol: rpmA
gene_biotype: protein_coding
description:
  TIGRFAM: Ribosomal protein L27; HAMAP: Ribosomal protein L27; KEGG: tpr:Tpau_1474 ribosomal protein L27; PFAM: Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.


ensembl_gene_id: Psed_1990
symbol: obg
gene_biotype: protein_coding
description:
  GTPase obg; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.


ensembl_gene_id: Psed_1991
symbol: proB
gene_biotype: protein_coding
description:
  Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.


ensembl_gene_id: Psed_1992
symbol: Psed_1992
gene_biotype: protein_coding
description:
  Manually curated; KEGG: sro:Sros_6795 protein-L-isoaspartate(D-aspartate)O-methyltransferase; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase.


ensembl_gene_id: Psed_1993
symbol: Psed_1993
gene_biotype: protein_coding
description:
  TIGRFAM: DNA helicase, ATP-dependent, RecQ type; PFAM: Helicase, C-terminal; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; KEGG: ami:Amir_1193 ATP-dependent DNA helicase, RecQ family; SMART: Helicase, C-terminal; DEAD-like helicase, N-terminal.


ensembl_gene_id: Psed_1994
symbol: Psed_1994
gene_biotype: protein_coding
description:
  ATPase associated with various cellular activities AAA_5; KEGG: rha:RHA1_ro01299 hypothetical protein; PFAM: ATPase, AAA-5; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_1996
symbol: Psed_1996
gene_biotype: protein_coding
description:
  Regulatory protein ArsR; KEGG: cwo:Cwoe_3384 transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR.


ensembl_gene_id: Psed_1999
symbol: Psed_1999
gene_biotype: protein_coding
description:
  Transcriptional regulator, putative ATPase, winged helix family; KEGG: sro:Sros_0735 ATPase-like protein; PFAM: Bacterial transcriptional activator domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, C-terminal.


ensembl_gene_id: Psed_2002
symbol: Psed_2002
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: amd:AMED_1576 TetR family transcriptional regulator.


ensembl_gene_id: Psed_2004
symbol: nadD
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).


ensembl_gene_id: Psed_2005
symbol: rsfS
gene_biotype: protein_coding
description:
  Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.


ensembl_gene_id: Psed_2006
symbol: Psed_2006
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_6693 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1; Belongs to the phosphoglycerate mutase family.


ensembl_gene_id: Psed_2009
symbol: Psed_2009
gene_biotype: protein_coding
description:
  TIGRFAM: Competence protein ComEA, helix-hairpin-helix domain; PFAM: Soluble ligand binding domain; Helix-hairpin-helix motif; KEGG: nml:Namu_1518 competence protein ComEA helix-hairpin-helix repeat protein; SMART: Helix-hairpin-helix DNA-binding motif, class 1.


ensembl_gene_id: Psed_2011
symbol: Psed_2011
gene_biotype: protein_coding
description:
  TIGRFAM: Threonine synthase; KEGG: ami:Amir_1205 threonine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit.


ensembl_gene_id: Psed_2012
symbol: Psed_2012
gene_biotype: protein_coding
description:
  DNA polymerase III, delta subunit; KEGG: svi:Svir_12630 hypothetical protein; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta.


ensembl_gene_id: Psed_2015
symbol: Psed_2015
gene_biotype: protein_coding
description:
  PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; NHL repeat; KEGG: krh:KRH_03700 hypothetical protein.


ensembl_gene_id: Psed_2016
symbol: Psed_2016
gene_biotype: protein_coding
description:
  KEGG: rha:RHA1_ro05056 ABC transporter, ATP-binding component; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_2017
symbol: Psed_2017
gene_biotype: protein_coding
description:
  PFAM: DNA glycosylase/AP lyase, catalytic domain; DNA glycosylase/AP lyase, H2TH DNA-binding; KEGG: kra:Krad_0151 DNA-(apurinic or apyrimidinic site) lyase; SMART: DNA glycosylase/AP lyase, catalytic domain.


ensembl_gene_id: Psed_2018
symbol: Psed_2018
gene_biotype: protein_coding
description:
  KEGG: nml:Namu_1164 PA-phosphatase-like phosphoesterase; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase.


ensembl_gene_id: Psed_2019
symbol: pgi
gene_biotype: protein_coding
description:
  HAMAP: Phosphoglucose isomerase (PGI); KEGG: jde:Jden_0370 glucose-6-phosphate isomerase; PFAM: Phosphoglucose isomerase (PGI); Belongs to the GPI family.


ensembl_gene_id: Psed_2026
symbol: Psed_2026
gene_biotype: protein_coding
description:
  TIGRFAM: Glutamate decarboxylase; KEGG: nfa:nfa35400 putative glutamate decarboxylase; PFAM: Pyridoxal phosphate-dependent decarboxylase; Belongs to the group II decarboxylase family.


ensembl_gene_id: Psed_2027
symbol: Psed_2027
gene_biotype: protein_coding
description:
  Protein of unknown function UCP012608; PFAM: Uncharacterised conserved protein UCP012608; KEGG: svi:Svir_06550 hypothetical protein.


ensembl_gene_id: Psed_2031
symbol: Psed_2031
gene_biotype: protein_coding
description:
  Metallophosphoesterase; PFAM: Metallo-dependent phosphatase; KEGG: fra:Francci3_1505 metallophosphoesterase.


ensembl_gene_id: Psed_2032
symbol: rpmE2
gene_biotype: protein_coding
description:
  TIGRFAM: Ribosomal protein L31; HAMAP: Ribosomal protein L31; KEGG: amd:AMED_5005 large subunit ribosomal protein L31; PFAM: Ribosomal protein L31.


ensembl_gene_id: Psed_2033
symbol: Psed_2033
gene_biotype: protein_coding
description:
  ABC-type transporter, periplasmic subunit; PFAM: Periplasmic binding protein; KEGG: rer:RER_04570 iron-siderophore binding protein.


ensembl_gene_id: Psed_2034
symbol: Psed_2034
gene_biotype: protein_coding
description:
  Cl- channel voltage-gated family protein; PFAM: Chloride channel, voltage gated; KEGG: afo:Afer_0254 chloride channel core.


ensembl_gene_id: Psed_2036
symbol: Psed_2036
gene_biotype: protein_coding
description:
  PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: sna:Snas_3554 bifunctional deaminase-reductase domain-containing protein.


ensembl_gene_id: Psed_2038
symbol: Psed_2038
gene_biotype: protein_coding
description:
  PFAM: Streptomyces sporulation/cell division protein SsgA; KEGG: ami:Amir_2015 sporulation and cell division protein SsgA.


ensembl_gene_id: Psed_2039
symbol: Psed_2039
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_2016 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2.


ensembl_gene_id: Psed_2042
symbol: Psed_2042
gene_biotype: protein_coding
description:
  Beta-lactamase domain protein; KEGG: rbi:RB2501_04000 hypothetical protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like.


ensembl_gene_id: Psed_2043
symbol: Psed_2043
gene_biotype: protein_coding
description:
  PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: gob:Gobs_4877 activator of HSP90 ATPase 1 family protein.


ensembl_gene_id: Psed_2044
symbol: Psed_2044
gene_biotype: protein_coding
description:
  Regulatory protein ArsR; KEGG: gob:Gobs_4878 transcriptional regulator TrmB; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR.


ensembl_gene_id: Psed_2045
symbol: Psed_2045
gene_biotype: protein_coding
description:
  PFAM: Major intrinsic protein; KEGG: nml:Namu_0790 major intrinsic protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.


ensembl_gene_id: Psed_2046
symbol: Psed_2046
gene_biotype: protein_coding
description:
  TIGRFAM: Glutamate decarboxylase; KEGG: bav:BAV2797 glutamate decarboxylase alpha/beta; PFAM: Pyridoxal phosphate-dependent decarboxylase; Belongs to the group II decarboxylase family.


ensembl_gene_id: Psed_2048
symbol: Psed_2048
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: art:Arth_3112 TetR family transcriptional regulator.


ensembl_gene_id: Psed_2052
symbol: Psed_2052
gene_biotype: protein_coding
description:
  KEGG: fri:FraEuI1c_4109 hydrolase CocE/NonD family protein; TIGRFAM: CocE/NonD hydrolase; SMART: Peptidase S15/CocE/NonD, C-terminal.


ensembl_gene_id: Psed_2054
symbol: ku-2
gene_biotype: protein_coding
description:
  DNA repair protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.


ensembl_gene_id: Psed_2056
symbol: Psed_2056
gene_biotype: protein_coding
description:
  FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; KEGG: fri:FraEuI1c_4558 nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A; TIGRFAM: Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A; PFAM: Luciferase-like, subgroup.


ensembl_gene_id: Psed_2057
symbol: Psed_2057
gene_biotype: protein_coding
description:
  Citryl-CoA lyase; KEGG: fre:Franean1_6909 citrate (pro-3S)-lyase; PFAM: Aldehyde-lyase domain; Belongs to the HpcH/HpaI aldolase family.


ensembl_gene_id: Psed_2058
symbol: Psed_2058
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_7135 acyl-CoA transferase/carnitine dehydratase; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.


ensembl_gene_id: Psed_2059
symbol: Psed_2059
gene_biotype: protein_coding
description:
  KEGG: bbr:BB2819 LacI family transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI.


ensembl_gene_id: Psed_2060
symbol: Psed_2060
gene_biotype: protein_coding
description:
  PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: cwo:Cwoe_0832 transcriptional regulator, TetR family.


ensembl_gene_id: Psed_2062
symbol: Psed_2062
gene_biotype: protein_coding
description:
  Enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core; KEGG: ade:Adeh_1645 short chain enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: Psed_2063
symbol: Psed_2063
gene_biotype: protein_coding
description:
  Enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core; KEGG: ace:Acel_0400 short chain enoyl-CoA hydratase.


ensembl_gene_id: Psed_2064
symbol: Psed_2064
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: bpt:Bpet2312 Leu/Ile/Val-binding protein precursor.


ensembl_gene_id: Psed_2065
symbol: Psed_2065
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: ABC transporter permease; KEGG: slp:Slip_2360 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Psed_2066
symbol: Psed_2066
gene_biotype: protein_coding
description:
  Monosaccharide-transporting ATPase; PFAM: ABC transporter-like; KEGG: mno:Mnod_0334 ABC transporter related; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_2067
symbol: Psed_2067
gene_biotype: protein_coding
description:
  KEGG: msl:Msil_0063 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_2068
symbol: Psed_2068
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: ABC transporter permease; KEGG: sgo:SGO_1629 branched-chain amino acid permease protein; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Psed_2070
symbol: Psed_2070
gene_biotype: protein_coding
description:
  NADPH:quinone reductase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: acp:A2cp1_3027 alcohol dehydrogenase zinc-binding domain protein; SMART: Polyketide synthase, enoylreductase.


ensembl_gene_id: Psed_2074
symbol: Psed_2074
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase (acetyl-transferring); KEGG: tro:trd_1493 TPP-dependent acetoin dehydrogenase alpha-subunit; PFAM: Dehydrogenase, E1 component.


ensembl_gene_id: Psed_2075
symbol: Psed_2075
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase (acetyl-transferring); PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; KEGG: bpe:BP0628 putative pyruvate dehydrogenase E1 beta subunit; SMART: Transketolase-like, pyrimidine-binding domain.


ensembl_gene_id: Psed_2076
symbol: Psed_2076
gene_biotype: protein_coding
description:
  PFAM: Biotin/lipoyl attachment; KEGG: mmr:Mmar10_2816 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase.


ensembl_gene_id: Psed_2077
symbol: Psed_2077
gene_biotype: protein_coding
description:
  KEGG: drm:Dred_0576 putative crotonobetaine/carnitine-CoA ligase; PFAM: AMP-dependent synthetase/ligase.


ensembl_gene_id: Psed_2079
symbol: Psed_2079
gene_biotype: protein_coding
description:
  KEGG: rop:ROP_25260 flavin-containing monooxygenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region.


ensembl_gene_id: Psed_2080
symbol: Psed_2080
gene_biotype: protein_coding
description:
  PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: ami:Amir_2775 GCN5-related N-acetyltransferase.


ensembl_gene_id: Psed_2081
symbol: Psed_2081
gene_biotype: protein_coding
description:
  Sigma54 specific transcriptional regulator, Fis family; PFAM: Helix-turn-helix, Fis-type; KEGG: rha:RHA1_ro10163 transcriptional regulator.


ensembl_gene_id: Psed_2082
symbol: Psed_2082
gene_biotype: protein_coding
description:
  KEGG: nml:Namu_2338 microcompartments protein; PFAM: Microcompartment protein, bacteria; SMART: Microcompartment protein, bacteria.


ensembl_gene_id: Psed_2084
symbol: Psed_2084
gene_biotype: protein_coding
description:
  KEGG: nml:Namu_2340 alcohol dehydrogenase GroES domain-containing protein; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; SMART: Polyketide synthase, enoylreductase.


ensembl_gene_id: Psed_2085
symbol: Psed_2085
gene_biotype: protein_coding
description:
  HAMAP: Malate dehydrogenase, NAD-dependent; KEGG: nml:Namu_2341 lactate/malate dehydrogenase; PFAM: Lactate/malate dehydrogenase, N-terminal; Lactate/malate dehydrogenase, C-terminal.


ensembl_gene_id: Psed_2086
symbol: Psed_2086
gene_biotype: protein_coding
description:
  KEGG: nml:Namu_2342 microcompartments protein; PFAM: Microcompartment protein, bacteria; SMART: Microcompartment protein, bacteria.


ensembl_gene_id: Psed_2087
symbol: Psed_2087
gene_biotype: protein_coding
description:
  TIGRFAM: Ethanolamine utilisation EutJ; KEGG: nml:Namu_2343 ethanolamine utilization protein EutJ family protein.


ensembl_gene_id: Psed_2088
symbol: Psed_2088
gene_biotype: protein_coding
description:
  Acetaldehyde dehydrogenase (acetylating); KEGG: nml:Namu_2344 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain.


ensembl_gene_id: Psed_2089
symbol: Psed_2089
gene_biotype: protein_coding
description:
  KEGG: nml:Namu_2345 microcompartments protein; PFAM: Microcompartment protein, bacteria; SMART: Microcompartment protein, bacteria.


ensembl_gene_id: Psed_2090
symbol: Psed_2090
gene_biotype: protein_coding
description:
  PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: nml:Namu_2346 ethanolamine utilization protein EutN/carboxysome structural protein CcmL.


ensembl_gene_id: Psed_2092
symbol: Psed_2092
gene_biotype: protein_coding
description:
  PFAM: Haloacid dehalogenase-like hydrolase; KEGG: nml:Namu_2348 haloacid dehalogenase domain-containing protein hydrolase.


ensembl_gene_id: Psed_2094
symbol: Psed_2094
gene_biotype: protein_coding
description:
  KEGG: nml:Namu_2357 pyruvate phosphate dikinase PEP/pyruvate-binding; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile domain; PEP-utilising enzyme.


ensembl_gene_id: Psed_2098
symbol: folD
gene_biotype: protein_coding
description:
  Bifunctional protein folD; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.


ensembl_gene_id: Psed_2101
symbol: metK
gene_biotype: protein_coding
description:
  S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.


ensembl_gene_id: Psed_2102
symbol: Psed_2102
gene_biotype: protein_coding
description:
  5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase; KEGG: iag:Igag_0649 methionine synthase (B12-independent); PFAM: Methionine synthase, vitamin-B12 independent.


ensembl_gene_id: Psed_2104
symbol: Psed_2104
gene_biotype: protein_coding
description:
  PFAM: Methylenetetrahydrofolate reductase; KEGG: dbr:Deba_2153 methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.


ensembl_gene_id: Psed_2107
symbol: Psed_2107
gene_biotype: protein_coding
description:
  Methionine synthase; KEGG: tro:trd_1049 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; PFAM: Homocysteine S-methyltransferase; Methylenetetrahydrofolate reductase.


ensembl_gene_id: Psed_2110
symbol: Psed_2110
gene_biotype: protein_coding
description:
  Neprilysin; KEGG: req:REQ_42420 metallopeptidase; PFAM: Peptidase M13; Peptidase M13, neprilysin, C-terminal.


ensembl_gene_id: Psed_2111
symbol: Psed_2111
gene_biotype: protein_coding
description:
  PFAM: Major facilitator superfamily MFS-1; KEGG: nml:Namu_2999 major facilitator superfamily protein.


ensembl_gene_id: Psed_2113
symbol: Psed_2113
gene_biotype: protein_coding
description:
  KEGG: fri:FraEuI1c_0640 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR.


ensembl_gene_id: Psed_2117
symbol: miaA
gene_biotype: protein_coding
description:
  tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.


ensembl_gene_id: Psed_2118
symbol: dapF
gene_biotype: protein_coding
description:
  Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.


ensembl_gene_id: Psed_2119
symbol: hflX
gene_biotype: protein_coding
description:
  GTP-binding proten HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.


ensembl_gene_id: Psed_2122
symbol: lexA
gene_biotype: protein_coding
description:
  SOS-response transcriptional repressor, LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.


ensembl_gene_id: Psed_2123
symbol: Psed_2123
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_2392 hypothetical protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup.


ensembl_gene_id: Psed_2124
symbol: nrdR
gene_biotype: protein_coding
description:
  Transcriptional repressor nrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.


ensembl_gene_id: Psed_2125
symbol: Psed_2125
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.


ensembl_gene_id: Psed_2131
symbol: Psed_2131
gene_biotype: protein_coding
description:
  Beta-lactamase domain protein; KEGG: svi:Svir_08650 Zn-dependent hydrolase, glyoxylase; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like.


ensembl_gene_id: Psed_2134
symbol: Psed_2134
gene_biotype: protein_coding
description:
  Beta-ketoacyl-acyl-carrier-protein synthase I; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.


ensembl_gene_id: Psed_2136
symbol: fabH
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) synthase 3; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.


ensembl_gene_id: Psed_2137
symbol: Psed_2137
gene_biotype: protein_coding
description:
  (Acyl-carrier-protein) S-malonyltransferase; PFAM: Acyl transferase; KEGG: rha:RHA1_ro01199 [acyl-carrier protein] S-malonyltransferase; SMART: Polyketide synthase, acyl transferase domain.


ensembl_gene_id: Psed_2139
symbol: Psed_2139
gene_biotype: protein_coding
description:
  Pirin domain protein; PFAM: Pirin, N-terminal; KEGG: req:REQ_42380 pirin-like protein; Belongs to the pirin family.


ensembl_gene_id: Psed_2140
symbol: Psed_2140
gene_biotype: protein_coding
description:
  KEGG: gob:Gobs_1896 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein.


ensembl_gene_id: Psed_2141
symbol: Psed_2141
gene_biotype: protein_coding
description:
  2-oxo-acid dehydrogenase E1 subunit, homodimeric type; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).


ensembl_gene_id: Psed_2143
symbol: Psed_2143
gene_biotype: protein_coding
description:
  PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: amd:AMED_2115 alkyl hydroperoxide reductase/thiol specific antioxidant.


ensembl_gene_id: Psed_2146
symbol: Psed_2146
gene_biotype: protein_coding
description:
  KEGG: hch:HCH_06992 putative nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; Belongs to the NAPRTase family.


ensembl_gene_id: Psed_2151
symbol: Psed_2151
gene_biotype: protein_coding
description:
  TIGRFAM: Quinone oxidoreductase putative, YhdH/YhfP; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: acr:Acry_2363 alcohol dehydrogenase; SMART: Polyketide synthase, enoylreductase.


ensembl_gene_id: Psed_2160
symbol: Psed_2160
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function DUF861, cupin-3; KEGG: mkm:Mkms_0992 protein of unknown function DUF861, cupin_3.


ensembl_gene_id: Psed_2161
symbol: Psed_2161
gene_biotype: protein_coding
description:
  PFAM: Aldehyde dehydrogenase domain; KEGG: fri:FraEuI1c_2858 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: Psed_2162
symbol: Psed_2162
gene_biotype: protein_coding
description:
  Lactaldehyde dehydrogenase; KEGG: fal:FRAAL6082 putative succinate-semialdehyde dehydrogenase I, NADP-dependent; PFAM: Aldehyde dehydrogenase domain.


ensembl_gene_id: Psed_2164
symbol: Psed_2164
gene_biotype: protein_coding
description:
  KEGG: sth:STH770 LacI family transcriptional repressor; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI.


ensembl_gene_id: Psed_2165
symbol: rbsK
gene_biotype: protein_coding
description:
  Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.


ensembl_gene_id: Psed_2166
symbol: Psed_2166
gene_biotype: protein_coding
description:
  TIGRFAM: Phosphoribosyl pyrophosphokinase; KEGG: cwo:Cwoe_5250 ribose-phosphate pyrophosphokinase; PFAM: Phosphoribosyltransferase.


ensembl_gene_id: Psed_2170
symbol: Psed_2170
gene_biotype: protein_coding
description:
  KEGG: rha:RHA1_ro11047 oxidoreductase; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding.


ensembl_gene_id: Psed_2171
symbol: Psed_2171
gene_biotype: protein_coding
description:
  PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sco:SCO7518 TetR family transcriptional regulator.


ensembl_gene_id: Psed_2175
symbol: Psed_2175
gene_biotype: protein_coding
description:
  NADPH dehydrogenase; KEGG: ava:Ava_C0148 flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal.


ensembl_gene_id: Psed_2179
symbol: Psed_2179
gene_biotype: protein_coding
description:
  KEGG: afw:Anae109_2601 hypothetical protein; TIGRFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; PFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG.


ensembl_gene_id: Psed_2187
symbol: Psed_2187
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: mes:Meso_3740 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Psed_2188
symbol: Psed_2188
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: mes:Meso_3739 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Psed_2189
symbol: Psed_2189
gene_biotype: protein_coding
description:
  KEGG: kra:Krad_0942 ABC transporter related; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; SMART: ATPase, AAA+ type, core; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Psed_2190
symbol: Psed_2190
gene_biotype: protein_coding
description:
  ABC-type transporter, periplasmic subunit; PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: mes:Meso_3737 extracellular solute-binding protein.


ensembl_gene_id: Psed_2191
symbol: Psed_2191
gene_biotype: protein_coding
description:
  FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; KEGG: mav:MAV_3809 dibenzothiophene desulfurization enzyme A; TIGRFAM: Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A; PFAM: Alpha/beta hydrolase fold-1.


ensembl_gene_id: Psed_2192
symbol: Psed_2192
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; KEGG: fal:FRAAL4004 putative nucleoside-diphosphate-sugar epimerases.


ensembl_gene_id: Psed_2194
symbol: Psed_2194
gene_biotype: protein_coding
description:
  PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal; KEGG: fre:Franean1_3756 acyl-CoA dehydrogenase type 2.


ensembl_gene_id: Psed_2196
symbol: Psed_2196
gene_biotype: protein_coding
description:
  Trimethylamine-N-oxide reductase (cytochrome c); KEGG: bbr:BB1545 putative biotin sulfoxide reductase; PFAM: Molydopterin dinucleotide-binding domain; Molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: Psed_2197
symbol: Psed_2197
gene_biotype: protein_coding
description:
  PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: fri:FraEuI1c_2012 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Psed_2199
symbol: Psed_2199
gene_biotype: protein_coding
description:
  Ketopantoate reductase ApbA/PanE domain protein; KEGG: fal:FRAAL3862 thiosulfate sulfurtransferase (partial match); PFAM: Ketopantoate reductase ApbA/PanE, N-terminal; Ketopantoate reductase ApbA/PanE, C-terminal; Rhodanese-like; SMART: Rhodanese-like.


ensembl_gene_id: Psed_2201
symbol: Psed_2201
gene_biotype: protein_coding
description:
  D-lactate dehydrogenase (cytochrome); KEGG: fal:FRAAL3861 putative glycolate oxidoreductase (partial match); PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal.


ensembl_gene_id: Psed_2203
symbol: Psed_2203
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_0755 cobalamin synthesis CobW-like protein; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SMART: Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal.


ensembl_gene_id: Psed_2204
symbol: rpmG
gene_biotype: protein_coding
description:
  TIGRFAM: Ribosomal protein L33; HAMAP: Ribosomal protein L33; KEGG: mab:MAB_0333c 50S ribosomal protein L33; PFAM: Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.


ensembl_gene_id: Psed_2210
symbol: grpE
gene_biotype: protein_coding
description:
  Protein grpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent i [...]


ensembl_gene_id: Psed_2211
symbol: Psed_2211
gene_biotype: protein_coding
description:
  KEGG: sma:SAV_7239 heat shock protein DnaJ; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal.


ensembl_gene_id: Psed_2213
symbol: clpB
gene_biotype: protein_coding
description:
  ATP-dependent chaperone ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.


ensembl_gene_id: Psed_2216
symbol: Psed_2216
gene_biotype: protein_coding
description:
  Cyclic nucleotide-binding protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Cyclic nucleotide-binding domain; KEGG: sma:SAV_7243 thioredoxin reductase; SMART: Cyclic nucleotide-binding domain.


ensembl_gene_id: Psed_2217
symbol: Psed_2217
gene_biotype: protein_coding
description:
  KEGG: scb:SCAB_8981 LuxR family regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal.


ensembl_gene_id: Psed_2220
symbol: Psed_2220
gene_biotype: protein_coding
description:
  TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: nfa:pnf1280 putative cation-transporting ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase.


ensembl_gene_id: Psed_2223
symbol: Psed_2223
gene_biotype: protein_coding
description:
  KEGG: svi:Svir_05780 MIP family channel protein; TIGRFAM: Aquaporin; PFAM: Major intrinsic protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.


ensembl_gene_id: Psed_2225
symbol: Psed_2225
gene_biotype: protein_coding
description:
  KEGG: rha:RHA1_ro08511 catechol 1,2-dioxygenase; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal; Catechol dioxygenase, N-terminal.


ensembl_gene_id: Psed_2226
symbol: Psed_2226
gene_biotype: protein_coding
description:
  KEGG: nml:Namu_2880 LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal.


ensembl_gene_id: Psed_2227
symbol: Psed_2227
gene_biotype: protein_coding
description:
  PFAM: 4-hydroxyphenylacetate 3-hydroxylase; KEGG: reu:Reut_A1585 4-hydroxyphenylacetate 3-hydroxylase.


ensembl_gene_id: Psed_2228
symbol: Psed_2228
gene_biotype: protein_coding
description:
  ATP-dependent transcriptional regulator, MalT-like, LuxR family; KEGG: msm:MSMEG_4430 transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal.


ensembl_gene_id: Psed_2229
symbol: Psed_2229
gene_biotype: protein_coding
description:
  KEGG: cwo:Cwoe_0945 flavin reductase domain protein FMN-binding protein; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding.


ensembl_gene_id: Psed_2232
symbol: Psed_2232
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) reductase; KEGG: fal:FRAAL2457 putative short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Psed_2235
symbol: Psed_2235
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: bja:blr3928 hypothetical protein.


ensembl_gene_id: Psed_2239
symbol: Psed_2239
gene_biotype: protein_coding
description:
  KEGG: nml:Namu_2352 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Psed_2242
symbol: Psed_2242
gene_biotype: protein_coding
description:
  Beta-lactamase domain protein; KEGG: bts:Btus_1282 hypothetical protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like.


ensembl_gene_id: Psed_2245
symbol: Psed_2245
gene_biotype: protein_coding
description:
  Sigma54 specific transcriptional regulator, Fis family; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; KEGG: rop:ROP_46620 putative Fis family transcriptional regulator.


ensembl_gene_id: Psed_2246
symbol: Psed_2246
gene_biotype: protein_coding
description:
  KEGG: art:Arth_3959 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR.


ensembl_gene_id: Psed_2247
symbol: Psed_2247
gene_biotype: protein_coding
description:
  KEGG: fre:Franean1_4489 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Psed_2249
symbol: Psed_2249
gene_biotype: protein_coding
description:
  NADPH:quinone reductase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: sen:SACE_7338 zinc-binding oxidoreductase; SMART: Polyketide synthase, enoylreductase.


ensembl_gene_id: Psed_2250
symbol: Psed_2250
gene_biotype: protein_coding
description:
  Carbon-monoxide dehydrogenase (acceptor); Manually curated; KEGG: sti:Sthe_2813 molybdopterin dehydrogenase FAD-binding protein; PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal.


ensembl_gene_id: Psed_2251
symbol: Psed_2251
gene_biotype: protein_coding
description:
  Carbon-monoxide dehydrogenase (acceptor); KEGG: sti:Sthe_0231 (2Fe-2S)-binding domain protein; PFAM: [2Fe-2S]-binding; Ferredoxin.


ensembl_gene_id: Psed_2252
symbol: Psed_2252
gene_biotype: protein_coding
description:
  Carbon-monoxide dehydrogenase (acceptor); KEGG: sti:Sthe_2310 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead.


ensembl_gene_id: Psed_2253
symbol: Psed_2253
gene_biotype: protein_coding
description:
  PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: mkm:Mkms_0332 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Psed_2254
symbol: Psed_2254
gene_biotype: protein_coding
description:
  KEGG: nml:Namu_3427 epoxide hydrolase domain-containing protein; PFAM: Epoxide hydrolase, N-terminal; Alpha/beta hydrolase fold-1.


ensembl_gene_id: Psed_2255
symbol: Psed_2255
gene_biotype: protein_coding
description:
  ATPase associated with various cellular activities AAA_5; PFAM: ATPase, AAA-5; KEGG: nml:Namu_2354 ATPase.


ensembl_gene_id: Psed_2256
symbol: Psed_2256
gene_biotype: protein_coding
description:
  KEGG: nml:Namu_2355 von Willebrand factor type A; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A.


ensembl_gene_id: Psed_2257
symbol: Psed_2257
gene_biotype: protein_coding
description:
  KEGG: rop:ROP_46670 carveol dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Psed_2259
symbol: Psed_2259
gene_biotype: protein_coding
description:
  Monosaccharide-transporting ATPase; PFAM: ABC transporter-like; ABC transporter permease; KEGG: cwo:Cwoe_3938 ABC transporter related protein; SMART: ATPase, AAA+ type, core; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Psed_2260
symbol: Psed_2260
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: ABC transporter permease; KEGG: rop:ROP_31040 putative ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Psed_2262
symbol: Psed_2262
gene_biotype: protein_coding
description:
  HpcH/HpaI aldolase; PFAM: Aldehyde-lyase domain; KEGG: rop:ROP_33640 putative oxidoreductase/aldolase; Belongs to the HpcH/HpaI aldolase family.


ensembl_gene_id: Psed_2263
symbol: Psed_2263
gene_biotype: protein_coding
description:
  Alcohol dehydrogenase zinc-binding domain protein; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: rxy:Rxyl_2379 zinc-binding alcohol dehydrogenase.


ensembl_gene_id: Psed_2264
symbol: Psed_2264
gene_biotype: protein_coding
description:
  PFAM: Xylose isomerase, TIM barrel domain; KEGG: swi:Swit_3304 xylose isomerase domain-containing protein.


ensembl_gene_id: Psed_2266
symbol: Psed_2266
gene_biotype: protein_coding
description:
  Alpha/beta hydrolase fold protein; KEGG: rha:RHA1_ro08833 epoxide hydrolase; manually curated; PFAM: Alpha/beta hydrolase fold-1.


ensembl_gene_id: Psed_2267
symbol: Psed_2267
gene_biotype: protein_coding
description:
  KEGG: fra:Francci3_2500 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR.


ensembl_gene_id: Psed_2268
symbol: Psed_2268
gene_biotype: protein_coding
description:
  Cl- channel voltage-gated family protein; PFAM: Chloride channel, voltage gated; Cystathionine beta-synthase, core; KEGG: amd:AMED_5732 transport integral membrane protein.


ensembl_gene_id: Psed_2270
symbol: Psed_2270
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mav:MAV_1244 glyoxalase family protein.


ensembl_gene_id: Psed_2271
symbol: Psed_2271
gene_biotype: protein_coding
description:
  PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: fri:FraEuI1c_3931 GCN5-related N-acetyltransferase.


ensembl_gene_id: Psed_2274
symbol: Psed_2274
gene_biotype: protein_coding
description:
  KEGG: ava:Ava_4328 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Psed_2276
symbol: Psed_2276
gene_biotype: protein_coding
description:
  PFAM: Signal transduction response regulator, C-terminal; Bacterial transcriptional activator domain; KEGG: ach:Achl_4571 transcriptional activator domain protein.


ensembl_gene_id: Psed_2277
symbol: Psed_2277
gene_biotype: protein_coding
description:
  KEGG: ach:Achl_4570 flavin reductase domain protein FMN-binding; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding.


ensembl_gene_id: Psed_2278
symbol: Psed_2278
gene_biotype: protein_coding
description:
  ATP-dependent transcriptional regulator, MalT-like, LuxR family; KEGG: bch:Bcen2424_5833 ATP-dependent transcription regulator LuxR; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal.


ensembl_gene_id: Psed_2280
symbol: Psed_2280
gene_biotype: protein_coding
description:
  KEGG: rpa:RPA2149 putative hydroxyquinol 1,2-dioxygenase; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal; Catechol dioxygenase, N-terminal.


ensembl_gene_id: Psed_2281
symbol: Psed_2281
gene_biotype: protein_coding
description:
  KEGG: rop:ROP_11540 putative ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_2282
symbol: Psed_2282
gene_biotype: protein_coding
description:
  Protein of unknown function UPF0089; PFAM: O-acyltransferase, WSD1, N-terminal; KEGG: nml:Namu_4293 hypothetical protein.


ensembl_gene_id: Psed_2284
symbol: Psed_2284
gene_biotype: protein_coding
description:
  Putative signal transduction protein with CBS domains; KEGG: amd:AMED_5479 hypothetical protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core.


ensembl_gene_id: Psed_2293
symbol: Psed_2293
gene_biotype: protein_coding
description:
  KEGG: cai:Caci_2703 heat shock protein DnaJ domain protein; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal.


ensembl_gene_id: Psed_2303
symbol: Psed_2303
gene_biotype: protein_coding
description:
  PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; KEGG: svi:Svir_32600 glutamate dehydrogenase; SMART: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.


ensembl_gene_id: Psed_2304
symbol: Psed_2304
gene_biotype: protein_coding
description:
  KEGG: bid:Bind_1827 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR.


ensembl_gene_id: Psed_2306
symbol: Psed_2306
gene_biotype: protein_coding
description:
  PFAM: Transcription elongation factor, GreA/GreB, C-terminal; KEGG: svi:Svir_31810 transcription elongation factor GreA.


ensembl_gene_id: Psed_2307
symbol: Psed_2307
gene_biotype: protein_coding
description:
  Regulatory protein MarR; KEGG: rha:RHA1_ro08274 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR.


ensembl_gene_id: Psed_2308
symbol: Psed_2308
gene_biotype: protein_coding
description:
  KEGG: tcu:Tcur_1126 response regulator receiver modulated serine phosphatase; PFAM: Sporulation stage II, protein E C-terminal; Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; SMART: Signal transduction response regulator, receiver domain; Protein phosphatase 2C-like.


ensembl_gene_id: Psed_2310
symbol: Psed_2310
gene_biotype: protein_coding
description:
  PFAM: Sulphate transporter/antisigma-factor antagonist STAS; KEGG: saq:Sare_2243 anti-sigma-factor antagonist.


ensembl_gene_id: Psed_2312
symbol: Psed_2312
gene_biotype: protein_coding
description:
  SMART: MCP methyltransferase, CheR-type; PAS; TIGRFAM: PAS; KEGG: amd:AMED_4133 chemotaxis protein methyltransferase CheR; PFAM: MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal; MCP methyltransferase, CheR-type, all-alpha domain, N-terminal; PAS fold-4; PAS fold.


ensembl_gene_id: Psed_2314
symbol: Psed_2314
gene_biotype: protein_coding
description:
  PFAM: ATPase-like, ATP-binding domain; Sulphate transporter/antisigma-factor antagonist STAS; KEGG: ami:Amir_1818 putative signal transduction histidine kinase.


ensembl_gene_id: Psed_2318
symbol: Psed_2318
gene_biotype: protein_coding
description:
  Regulatory protein MerR; KEGG: gob:Gobs_3601 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR.


ensembl_gene_id: Psed_2323
symbol: Psed_2323
gene_biotype: protein_coding
description:
  KEGG: rxy:Rxyl_0276 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal.


ensembl_gene_id: Psed_2324
symbol: Psed_2324
gene_biotype: protein_coding
description:
  Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS; PFAM: Sporulation stage II, protein E C-terminal; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-4; Signal transduction response regulator, receiver domain; PAS fold-3; GAF; Sulphate transporter/antisigma-factor antagonist STAS; KEGG: gob:Gobs_0116 multi-sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; PAC motif; Si [...]


ensembl_gene_id: Psed_2325
symbol: Psed_2325
gene_biotype: protein_coding
description:
  Sulfate-transporting ATPase; PFAM: ABC transporter-like; KEGG: mta:Moth_1861 ABC transporter related; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_2326
symbol: Psed_2326
gene_biotype: protein_coding
description:
  KEGG: mta:Moth_1862 cobalt ABC transporter CbiQ, permease subunit; TIGRFAM: Cobalt ABC transporter CbiQ, permease subunit; PFAM: Cobalt transport protein.


ensembl_gene_id: Psed_2328
symbol: Psed_2328
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_8813 high-affinity nickel-transport protein; TIGRFAM: Nickel/cobalt transporter, high-affinity, bacteria; PFAM: Nickel/cobalt transporter, high-affinity; Belongs to the NiCoT transporter (TC 2.A.52) family.


ensembl_gene_id: Psed_2329
symbol: Psed_2329
gene_biotype: protein_coding
description:
  Peroxidase; KEGG: sno:Snov_0060 peroxidase; PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; Peroxiredoxin, C-terminal.


ensembl_gene_id: Psed_2330
symbol: Psed_2330
gene_biotype: protein_coding
description:
  PFAM: Drug/metabolite transporter; KEGG: msm:MSMEG_3416 protein of unknown function DUF6, transmembrane, putative.


ensembl_gene_id: Psed_2331
symbol: nnrD
gene_biotype: protein_coding
description:
  YjeF-related protein; Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S-and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.


ensembl_gene_id: Psed_2332
symbol: Psed_2332
gene_biotype: protein_coding
description:
  KEGG: mau:Micau_3460 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1; Belongs to the phosphoglycerate mutase family.


ensembl_gene_id: Psed_2334
symbol: Psed_2334
gene_biotype: protein_coding
description:
  Glycosyltransferase 28 domain protein; PFAM: Glycosyl transferase, family 28, C-terminal; KEGG: req:REQ_26890 hypothetical protein.


ensembl_gene_id: Psed_2337
symbol: Psed_2337
gene_biotype: protein_coding
description:
  Ribonuclease BN; KEGG: gob:Gobs_3356 ribonuclease BN; TIGRFAM: Ribonuclease BN; PFAM: Ribonuclease BN-related.


ensembl_gene_id: Psed_2338
symbol: Psed_2338
gene_biotype: protein_coding
description:
  ANTAR domain protein; PFAM: ANTAR; KEGG: sen:SACE_1903 response regulator receiver/ANTAR domain-containing protein.


ensembl_gene_id: Psed_2341
symbol: Psed_2341
gene_biotype: protein_coding
description:
  PFAM: Mg2+ transporter protein, CorA-like; KEGG: amd:AMED_4525 CorA-like putative magnesium transport protein.


ensembl_gene_id: Psed_2347
symbol: Psed_2347
gene_biotype: protein_coding
description:
  PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: kra:Krad_2810 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR.


ensembl_gene_id: Psed_2349
symbol: Psed_2349
gene_biotype: protein_coding
description:
  PFAM: ATPase-like, ATP-binding domain; KEGG: ami:Amir_5361 putative anti-sigma regulatory factor, serine/threonine protein kinase.


ensembl_gene_id: Psed_2350
symbol: Psed_2350
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_5363 RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3; Belongs to the sigma-70 factor family.


ensembl_gene_id: Psed_2351
symbol: Psed_2351
gene_biotype: protein_coding
description:
  KEGG: mil:ML5_5540 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3.


ensembl_gene_id: Psed_2352
symbol: map
gene_biotype: protein_coding
description:
  Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.


ensembl_gene_id: Psed_2357
symbol: Psed_2357
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: amd:AMED_3042 TetR family transcriptional regulator.


ensembl_gene_id: Psed_2358
symbol: Psed_2358
gene_biotype: protein_coding
description:
  (2Fe-2S)-binding domain-containing protein; PFAM: [2Fe-2S]-binding; Ferredoxin; KEGG: amd:AMED_3041 carbon-monoxide dehydrogenase small subunit.


ensembl_gene_id: Psed_2359
symbol: Psed_2359
gene_biotype: protein_coding
description:
  Xanthine dehydrogenase; KEGG: amd:AMED_3040 carbon-monoxide dehydrogenase medium subunit; PFAM: Molybdopterin dehydrogenase, FAD-binding.


ensembl_gene_id: Psed_2360
symbol: Psed_2360
gene_biotype: protein_coding
description:
  Xanthine dehydrogenase; KEGG: sen:SACE_4618 aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead.


ensembl_gene_id: Psed_2362
symbol: Psed_2362
gene_biotype: protein_coding
description:
  KEGG: sgr:SGR_6670 putative dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal.


ensembl_gene_id: Psed_2363
symbol: Psed_2363
gene_biotype: protein_coding
description:
  Putative signal transduction protein with CBS domains; KEGG: amd:AMED_5201 signal transduction protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core.


ensembl_gene_id: Psed_2368
symbol: Psed_2368
gene_biotype: protein_coding
description:
  PFAM: Iron sulphur-containing domain, CDGSH-type; KEGG: nda:Ndas_3468 iron sulfur domain-containing, CDGSH-type.


ensembl_gene_id: Psed_2369
symbol: Psed_2369
gene_biotype: protein_coding
description:
  Methylase; KEGG: kra:Krad_3360 putative methylase; TIGRFAM: Putative methylase; PFAM: Methyltransferase small.


ensembl_gene_id: Psed_2371
symbol: Psed_2371
gene_biotype: protein_coding
description:
  ABC-type transporter, periplasmic subunit; PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: fri:FraEuI1c_3106 extracellular solute-binding protein family 5.


ensembl_gene_id: Psed_2372
symbol: Psed_2372
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: fri:FraEuI1c_3107 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Psed_2373
symbol: Psed_2373
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: fri:FraEuI1c_3108 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Psed_2374
symbol: Psed_2374
gene_biotype: protein_coding
description:
  PFAM: Luciferase-like, subgroup; KEGG: ske:Sked_34610 F420-dependent methylene-tetrahydromethanopterin reductase.


ensembl_gene_id: Psed_2377
symbol: Psed_2377
gene_biotype: protein_coding
description:
  GAF domain protein; Manually curated; PFAM: GAF; ANTAR; KEGG: fre:Franean1_0255 putative GAF sensor protein; SMART: GAF.


ensembl_gene_id: Psed_2378
symbol: Psed_2378
gene_biotype: protein_coding
description:
  F420-dependent oxidoreductase, G6PDH family; KEGG: amd:AMED_5210 coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase; TIGRFAM: Glucose-6-phosphate dehydrogenase-related, F420-dependent; PFAM: Luciferase-like, subgroup.


ensembl_gene_id: Psed_2380
symbol: Psed_2380
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_5363 RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily; TIGRFAM: RNA polymerase sigma-B/F/G type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3; Belongs to the sigma-70 factor family.


ensembl_gene_id: Psed_2381
symbol: Psed_2381
gene_biotype: protein_coding
description:
  Protein serine/threonine phosphatase with GAF(s) sensor(s); KEGG: svi:Svir_34940 fused histidine kinase with GAF domain/SpoIIE-like protein; PFAM: Sporulation stage II, protein E C-terminal; GAF; ATPase-like, ATP-binding domain; SMART: Protein phosphatase 2C-like; GAF.


ensembl_gene_id: Psed_2382
symbol: Psed_2382
gene_biotype: protein_coding
description:
  PFAM: Sulphate transporter/antisigma-factor antagonist STAS; KEGG: svi:Svir_34950 anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).


ensembl_gene_id: Psed_2386
symbol: Psed_2386
gene_biotype: protein_coding
description:
  Cyclase/dehydrase; PFAM: Streptomyces cyclase/dehydrase; KEGG: rha:RHA1_ro03411 hypothetical protein.


ensembl_gene_id: Psed_2387
symbol: gvpA
gene_biotype: protein_coding
description:
  Gas vesicle structural protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.


ensembl_gene_id: Psed_2391
symbol: Psed_2391
gene_biotype: protein_coding
description:
  Gas vesicle protein GVPa; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.


ensembl_gene_id: Psed_2398
symbol: Psed_2398
gene_biotype: protein_coding
description:
  LmbE family protein; PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; Methyltransferase type 12; KEGG: ami:Amir_2568 LmbE family protein.


ensembl_gene_id: Psed_2400
symbol: Psed_2400
gene_biotype: protein_coding
description:
  PFAM: Ferritin/Dps protein; KEGG: kra:Krad_1159 ferritin Dps family protein; Belongs to the Dps family.


ensembl_gene_id: Psed_2407
symbol: Psed_2407
gene_biotype: protein_coding
description:
  Protein tyrosine phosphatase; KEGG: rop:ROP_00170 putative arsenate reductase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight.


ensembl_gene_id: Psed_2408
symbol: Psed_2408
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_5143 arsenical resistance protein/arsenate reductase; TIGRFAM: Arsenical-resistance protein ACR3; PFAM: Bile acid:sodium symporter.


ensembl_gene_id: Psed_2409
symbol: Psed_2409
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_0760 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR.


ensembl_gene_id: Psed_2411
symbol: Psed_2411
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sen:SACE_4981 flavin binding monooxygenase.


ensembl_gene_id: Psed_2412
symbol: Psed_2412
gene_biotype: protein_coding
description:
  KEGG: rop:ROP_00080 putative ArsR family transcriptional regulator; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR.


ensembl_gene_id: Psed_2415
symbol: Psed_2415
gene_biotype: protein_coding
description:
  KEGG: kra:Krad_0228 HAD-superfamily hydrolase, subfamily IA, variant 1; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase.


ensembl_gene_id: Psed_2418
symbol: Psed_2418
gene_biotype: protein_coding
description:
  KEGG: nda:Ndas_0021 formate dehydrogenase, alpha subunit; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase, Fe4S4 domain; Molydopterin dinucleotide-binding domain; manually curated; TIGRFAM: Formate dehydrogenase, alpha subunit, anaerobic; SMART: Molybdopterin oxidoreductase, Fe4S4 domain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: Psed_2420
symbol: Psed_2420
gene_biotype: protein_coding
description:
  KEGG: mjl:Mjls_1517 methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.


ensembl_gene_id: Psed_2427
symbol: Psed_2427
gene_biotype: protein_coding
description:
  Acetolactate synthase; KEGG: amd:AMED_3305 pyruvate dehydrogenase; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Belongs to the TPP enzyme family.


ensembl_gene_id: Psed_2428
symbol: Psed_2428
gene_biotype: protein_coding
description:
  KEGG: gbm:Gbem_0994 protein-L-isoaspartate O-methyltransferase; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase.


ensembl_gene_id: Psed_2430
symbol: Psed_2430
gene_biotype: protein_coding
description:
  PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: bxe:Bxe_C0850 putative short-chain dehydrogenase/reductase; SMART: Polyketide synthase/Fatty acid synthase, KR.


ensembl_gene_id: Psed_2431
symbol: Psed_2431
gene_biotype: protein_coding
description:
  Pyridoxine 4-dehydrogenase; KEGG: sma:SAV_654 oxidoreductase; PFAM: NADP-dependent oxidoreductase domain.


ensembl_gene_id: Psed_2432
symbol: Psed_2432
gene_biotype: protein_coding
description:
  KEGG: sma:SAV_655 DNA-binding protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3.


ensembl_gene_id: Psed_2434
symbol: Psed_2434
gene_biotype: protein_coding
description:
  KEGG: fre:Franean1_1969 GAF sensor signal transduction histidine kinase; PFAM: GAF; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; SMART: GAF.


ensembl_gene_id: Psed_2437
symbol: Psed_2437
gene_biotype: protein_coding
description:
  CBS domain containing protein; PFAM: Cystathionine beta-synthase, core; KEGG: mka:MK1245 CBS domain-containing protein.


ensembl_gene_id: Psed_2439
symbol: Psed_2439
gene_biotype: protein_coding
description:
  Peptidoglycan glycosyltransferase; KEGG: amd:AMED_3027 penicillin-binding protein; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase.


ensembl_gene_id: Psed_2442
symbol: Psed_2442
gene_biotype: protein_coding
description:
  KEGG: gob:Gobs_1836 GAF modulated sigma54 specific transcriptional regulator, Fis family; manually curated; PFAM: RNA polymerase sigma factor 54, interaction; GAF; Helix-turn-helix, Fis-type.


ensembl_gene_id: Psed_2444
symbol: Psed_2444
gene_biotype: protein_coding
description:
  PDZ/DHR/GLGF domain protein; KEGG: nml:Namu_4674 peptidase S1 and S6 chymotrypsin/Hap; PFAM: PDZ/DHR/GLGF; Peptidase S1/S6, chymotrypsin/Hap; SMART: PDZ/DHR/GLGF.


ensembl_gene_id: Psed_2446
symbol: Psed_2446
gene_biotype: protein_coding
description:
  Enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core; KEGG: fal:FRAAL2442 enoyl CoA dehydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: Psed_2450
symbol: Psed_2450
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family with UTRA sensor domain protein; KEGG: sma:SAV_4857 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR.


ensembl_gene_id: Psed_2455
symbol: Psed_2455
gene_biotype: protein_coding
description:
  KEGG: kra:Krad_2500 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Psed_2458
symbol: Psed_2458
gene_biotype: protein_coding
description:
  KEGG: sti:Sthe_2892 5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal.


ensembl_gene_id: Psed_2459
symbol: Psed_2459
gene_biotype: protein_coding
description:
  Transcriptional regulator, CdaR; KEGG: msm:MSMEG_4044 GAF domain-containing protein; PFAM: GAF; SMART: GAF.


ensembl_gene_id: Psed_2464
symbol: Psed_2464
gene_biotype: protein_coding
description:
  PFAM: Glycine cleavage T-protein, N-terminal; KEGG: svi:Svir_11650 aminomethyltransferase; Belongs to the GcvT family.


ensembl_gene_id: Psed_2465
symbol: Psed_2465
gene_biotype: protein_coding
description:
  PFAM: Extradiol ring-cleavage dioxygenase LigAB, LigA subunit; KEGG: svi:Svir_38370 protocatechuate 4,5-dioxygenase alpha subunit.


ensembl_gene_id: Psed_2466
symbol: Psed_2466
gene_biotype: protein_coding
description:
  KEGG: svi:Svir_38360 protocatechuate 4,5-dioxygenase beta subunit; PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B.


ensembl_gene_id: Psed_2467
symbol: Psed_2467
gene_biotype: protein_coding
description:
  PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: amd:AMED_2250 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.


ensembl_gene_id: Psed_2469
symbol: Psed_2469
gene_biotype: protein_coding
description:
  KEGG: cwo:Cwoe_0946 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR.


ensembl_gene_id: Psed_2471
symbol: Psed_2471
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: mpa:MAP4047 hypothetical protein.


ensembl_gene_id: Psed_2474
symbol: Psed_2474
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: amd:AMED_3455 TetR family transcriptional regulator.


ensembl_gene_id: Psed_2475
symbol: Psed_2475
gene_biotype: protein_coding
description:
  Rieske (2Fe-2S) iron-sulfur domain protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: bja:bll7906 putative ferredoxin.


ensembl_gene_id: Psed_2476
symbol: Psed_2476
gene_biotype: protein_coding
description:
  Ureidoglycolate lyase; KEGG: cfl:Cfla_0281 fumarylacetoacetate (FAA) hydrolase; PFAM: Fumarylacetoacetase, C-terminal-like.


ensembl_gene_id: Psed_2480
symbol: Psed_2480
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: swi:Swit_1616 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Psed_2481
symbol: Psed_2481
gene_biotype: protein_coding
description:
  KEGG: sro:Sros_3030 ABC transporter related protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_2482
symbol: Psed_2482
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: ABC transporter permease; KEGG: rpt:Rpal_1423 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Psed_2483
symbol: Psed_2483
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: adg:Adeg_1594 extracellular ligand-binding receptor.


ensembl_gene_id: Psed_2484
symbol: Psed_2484
gene_biotype: protein_coding
description:
  KEGG: bge:BC1002_6024 ABC transporter related protein; PFAM: ABC transporter-like; ABC transporter permease; SMART: ATPase, AAA+ type, core; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Psed_2485
symbol: Psed_2485
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: pjd:Pjdr2_0210 transcriptional regulator, TetR family.


ensembl_gene_id: Psed_2487
symbol: Psed_2487
gene_biotype: protein_coding
description:
  PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: mno:Mnod_3485 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Psed_2490
symbol: Psed_2490
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sco:SCO7719 TetR family transcriptional regulator.


ensembl_gene_id: Psed_2495
symbol: Psed_2495
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: vei:Veis_4005 hypothetical protein.


ensembl_gene_id: Psed_2500
symbol: Psed_2500
gene_biotype: protein_coding
description:
  Carbon-monoxide dehydrogenase (acceptor); KEGG: tro:trd_A0777 carbon monoxide dehydrogenase medium chain (CO dehydrogenase subunit M) (CO-DH M); PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal.


ensembl_gene_id: Psed_2501
symbol: Psed_2501
gene_biotype: protein_coding
description:
  KEGG: tro:trd_A0077 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR.


ensembl_gene_id: Psed_2506
symbol: Psed_2506
gene_biotype: protein_coding
description:
  Dihydrolipoyl dehydrogenase; KEGG: msp:Mspyr1_05110 pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase component; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation.


ensembl_gene_id: Psed_2507
symbol: Psed_2507
gene_biotype: protein_coding
description:
  PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: ami:Amir_4893 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Psed_2508
symbol: Psed_2508
gene_biotype: protein_coding
description:
  PFAM: Methionine synthase, vitamin-B12 independent; KEGG: rrs:RoseRS_2516 methionine synthase, vitamin-B12 independent.


ensembl_gene_id: Psed_2512
symbol: Psed_2512
gene_biotype: protein_coding
description:
  PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: dar:Daro_3809 short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Psed_2513
symbol: Psed_2513
gene_biotype: protein_coding
description:
  KEGG: rlt:Rleg2_4436 HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase.


ensembl_gene_id: Psed_2514
symbol: Psed_2514
gene_biotype: protein_coding
description:
  PEP-utilizing protein mobile region; PFAM: PEP-utilising enzyme, mobile domain; KEGG: tcu:Tcur_0540 PEP-utilising protein mobile region.


ensembl_gene_id: Psed_2515
symbol: Psed_2515
gene_biotype: protein_coding
description:
  Pyruvate, water dikinase; KEGG: tpe:Tpen_0588 phosphoenolpyruvate synthase; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding.


ensembl_gene_id: Psed_2517
symbol: Psed_2517
gene_biotype: protein_coding
description:
  F420-dependent oxidoreductase; KEGG: mva:Mvan_0261 luciferase family protein; TIGRFAM: Luciferase-like, F420-dependent oxidoreductase, MSMEG4879, predicted; PFAM: Luciferase-like, subgroup.


ensembl_gene_id: Psed_2518
symbol: Psed_2518
gene_biotype: protein_coding
description:
  KEGG: aac:Aaci_2531 transcriptional regulator, IclR family; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal.


ensembl_gene_id: Psed_2519
symbol: Psed_2519
gene_biotype: protein_coding
description:
  Phthalate 4,5-dioxygenase; KEGG: aeh:Mlg_2359 Rieske (2Fe-2S) domain-containing protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain.


ensembl_gene_id: Psed_2521
symbol: Psed_2521
gene_biotype: protein_coding
description:
  Rieske (2Fe-2S) iron-sulfur domain protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: nde:NIDE2482 dioxygenase, ferredoxin subunit.


ensembl_gene_id: Psed_2522
symbol: Psed_2522
gene_biotype: protein_coding
description:
  KEGG: aac:Aaci_1617 4-oxalocrotonate tautomerase family enzyme; TIGRFAM: 4-oxalocrotonate tautomerase, bacteria/archaea; PFAM: 4-oxalocrotonate tautomerase.


ensembl_gene_id: Psed_2525
symbol: Psed_2525
gene_biotype: protein_coding
description:
  KEGG: tcu:Tcur_0533 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal.


ensembl_gene_id: Psed_2527
symbol: Psed_2527
gene_biotype: protein_coding
description:
  TIGRFAM: Catechol 2,3 dioxygenase; KEGG: bts:Btus_0957 catechol 2,3 dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Psed_2530
symbol: Psed_2530
gene_biotype: protein_coding
description:
  KEGG: tcu:Tcur_0533 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal.


ensembl_gene_id: Psed_2532
symbol: Psed_2532
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sro:Sros_9036 putative transcriptional regulator, TetR family.


ensembl_gene_id: Psed_2534
symbol: Psed_2534
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: bts:Btus_0118 transcriptional regulator, TetR family.


ensembl_gene_id: Psed_2536
symbol: Psed_2536
gene_biotype: protein_coding
description:
  Propanoyl-CoA C-acyltransferase; KEGG: rop:ROP_29670 putative acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Psed_2537
symbol: Psed_2537
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: rop:ROP_29680 hypothetical protein.


ensembl_gene_id: Psed_2539
symbol: Psed_2539
gene_biotype: protein_coding
description:
  PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: cwo:Cwoe_3937 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR.


ensembl_gene_id: Psed_2541
symbol: Psed_2541
gene_biotype: protein_coding
description:
  Phenylacetate--CoA ligase; KEGG: mpd:MCP_1725 putative phenylacetate-coenzyme A ligase; PFAM: AMP-dependent synthetase/ligase.


ensembl_gene_id: Psed_2544
symbol: Psed_2544
gene_biotype: protein_coding
description:
  PFAM: Glutamine amidotransferase class-I, C-terminal; KEGG: fri:FraEuI1c_6883 glutamine amidotransferase class-I.


ensembl_gene_id: Psed_2545
symbol: Psed_2545
gene_biotype: protein_coding
description:
  Nitrilase; KEGG: msm:MSMEG_5373 nitrilase 2; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.


ensembl_gene_id: Psed_2547
symbol: Psed_2547
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function DUF1097; KEGG: vei:Veis_4948 glutathione-regulated potassium-efflux system protein.


ensembl_gene_id: Psed_2548
symbol: Psed_2548
gene_biotype: protein_coding
description:
  GntR domain protein; KEGG: msm:MSMEG_5375 GntR-family protein transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR.


ensembl_gene_id: Psed_2549
symbol: Psed_2549
gene_biotype: protein_coding
description:
  L-serine dehydratase 1; TIGRFAM: Iron-sulphur-dependent L-serine dehydratase single chain form; KEGG: rop:ROP_15050 L-serine dehydratase; PFAM: Serine dehydratase-like, alpha subunit; Serine dehydratase beta chain; Belongs to the iron-sulfur dependent L-serine dehydratase family.


ensembl_gene_id: Psed_2551
symbol: gcvH
gene_biotype: protein_coding
description:
  Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.


ensembl_gene_id: Psed_2553
symbol: gcvP
gene_biotype: protein_coding
description:
  Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.


ensembl_gene_id: Psed_2554
symbol: Psed_2554
gene_biotype: protein_coding
description:
  Xenobiotic-transporting ATPase; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: ami:Amir_3695 ABC transporter related; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_2555
symbol: Psed_2555
gene_biotype: protein_coding
description:
  PFAM: Carboxymuconolactone decarboxylase; KEGG: bxe:Bxe_C0598 putative carboxymuconolactone decarboxylase.


ensembl_gene_id: Psed_2556
symbol: Psed_2556
gene_biotype: protein_coding
description:
  KEGG: lch:Lcho_1200 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Psed_2557
symbol: Psed_2557
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function DUF849, prokaryotic; KEGG: cyj:Cyan7822_4323 hypothetical protein.


ensembl_gene_id: Psed_2559
symbol: Psed_2559
gene_biotype: protein_coding
description:
  KEGG: fre:Franean1_4699 carbon-monoxide dehydrogenase (acceptor); PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead.


ensembl_gene_id: Psed_2561
symbol: Psed_2561
gene_biotype: protein_coding
description:
  Carbon-monoxide dehydrogenase (acceptor); KEGG: sti:Sthe_2813 molybdopterin dehydrogenase FAD-binding protein; PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal.


ensembl_gene_id: Psed_2563
symbol: Psed_2563
gene_biotype: protein_coding
description:
  KEGG: etr:ETAE_0966 hypothetical protein; TIGRFAM: Ethyl tert-butyl ether degradation EthD; PFAM: Ethyl tert-butyl ether degradation EthD.


ensembl_gene_id: Psed_2565
symbol: Psed_2565
gene_biotype: protein_coding
description:
  Naphthoate synthase; KEGG: tfu:Tfu_1299 dihydroxynaphthoic acid synthase; PFAM: Crotonase, core; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: Psed_2567
symbol: Psed_2567
gene_biotype: protein_coding
description:
  PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: htu:Htur_3820 fumarate reductase/succinate dehydrogenase flavoprotein domain protein.


ensembl_gene_id: Psed_2568
symbol: Psed_2568
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: bxe:Bxe_A2750 branched chain amino acid ABC transporter periplasmic ligand-binding protein.


ensembl_gene_id: Psed_2569
symbol: Psed_2569
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: ABC transporter permease; KEGG: sth:STH802 branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Psed_2570
symbol: Psed_2570
gene_biotype: protein_coding
description:
  Phosphonate-transporting ATPase; PFAM: ABC transporter-like; ABC transporter permease; KEGG: sti:Sthe_2800 ABC transporter related protein; SMART: ATPase, AAA+ type, core; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Psed_2571
symbol: Psed_2571
gene_biotype: protein_coding
description:
  KEGG: cwo:Cwoe_0429 ABC transporter related protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_2572
symbol: Psed_2572
gene_biotype: protein_coding
description:
  acetyl-CoA acetyltransferase; TIGRFAM: Thiolase; KEGG: cti:RALTA_A1580 3-ketoacyl-CoA thiolase; (thiolase I, acetyl-CoA transferase); PFAM: Thiolase, N-terminal; Thiolase, C-terminal; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Psed_2573
symbol: Psed_2573
gene_biotype: protein_coding
description:
  PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: rme:Rmet_5155 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR.


ensembl_gene_id: Psed_2575
symbol: Psed_2575
gene_biotype: protein_coding
description:
  KEGG: tfu:Tfu_1282 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain.


ensembl_gene_id: Psed_2582
symbol: Psed_2582
gene_biotype: protein_coding
description:
  PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: gym:GYMC10_1269 Rieske (2Fe-2S) iron-sulphur domain protein.


ensembl_gene_id: Psed_2583
symbol: Psed_2583
gene_biotype: protein_coding
description:
  o-succinylbenzoate--CoA ligase; KEGG: msp:Mspyr1_07630 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; PFAM: AMP-dependent synthetase/ligase.


ensembl_gene_id: Psed_2584
symbol: Psed_2584
gene_biotype: protein_coding
description:
  PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: tfu:Tfu_1298 2-deoxy-D-gluconate 3-dehydrogenase; SMART: Polyketide synthase/Fatty acid synthase, KR.


ensembl_gene_id: Psed_2586
symbol: Psed_2586
gene_biotype: protein_coding
description:
  KEGG: aac:Aaci_2398 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Psed_2590
symbol: Psed_2590
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) reductase; KEGG: tfu:Tfu_1466 short-chain alcohol dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Psed_2591
symbol: Psed_2591
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cwo:Cwoe_1024 glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Psed_2593
symbol: Psed_2593
gene_biotype: protein_coding
description:
  PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: art:Arth_2287 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein.


ensembl_gene_id: Psed_2594
symbol: Psed_2594
gene_biotype: protein_coding
description:
  L-iditol 2-dehydrogenase; KEGG: ttr:Tter_2008 alcohol dehydrogenase GroES domain protein; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal.


ensembl_gene_id: Psed_2595
symbol: Psed_2595
gene_biotype: protein_coding
description:
  PFAM: Xylose isomerase, TIM barrel domain; KEGG: nar:Saro_3491 xylose isomerase domain-containing protein.


ensembl_gene_id: Psed_2596
symbol: Psed_2596
gene_biotype: protein_coding
description:
  2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.


ensembl_gene_id: Psed_2598
symbol: Psed_2598
gene_biotype: protein_coding
description:
  (S)-2-hydroxy-acid oxidase; KEGG: rle:RL3578 putative L-lactate dehydrogenase; PFAM: FMN-dependent dehydrogenase.


ensembl_gene_id: Psed_2599
symbol: Psed_2599
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: reh:H16_A3293 ABC-type transporter, periplasmic component.


ensembl_gene_id: Psed_2601
symbol: Psed_2601
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: ABC transporter permease; KEGG: bxe:Bxe_A2754 branched chain amino acid ABC transporter inner membrane protein; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Psed_2602
symbol: Psed_2602
gene_biotype: protein_coding
description:
  Monosaccharide-transporting ATPase; PFAM: ABC transporter-like; KEGG: tcu:Tcur_2856 ABC transporter-like protein; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_2603
symbol: Psed_2603
gene_biotype: protein_coding
description:
  Fe(3+)-transporting ATPase; PFAM: ABC transporter-like; KEGG: mil:ML5_3917 abc transporter related protein; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_2606
symbol: Psed_2606
gene_biotype: protein_coding
description:
  KEGG: jan:Jann_2269 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Psed_2608
symbol: Psed_2608
gene_biotype: protein_coding
description:
  Succinate dehydrogenase; KEGG: nca:Noca_0203 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal.


ensembl_gene_id: Psed_2614
symbol: Psed_2614
gene_biotype: protein_coding
description:
  KEGG: fri:FraEuI1c_4693 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR.


ensembl_gene_id: Psed_2615
symbol: Psed_2615
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sma:SAV_4701 TetR family transcriptional regulator.


ensembl_gene_id: Psed_2616
symbol: Psed_2616
gene_biotype: protein_coding
description:
  KEGG: sco:SCO3366 exporter; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1.


ensembl_gene_id: Psed_2621
symbol: Psed_2621
gene_biotype: protein_coding
description:
  Enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core; KEGG: bxe:Bxe_B2809 putative enoyl-CoA hydratase/isomerase.


ensembl_gene_id: Psed_2622
symbol: Psed_2622
gene_biotype: protein_coding
description:
  FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; TIGRFAM: Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A; KEGG: bxe:Bxe_B2810 putative nitrilotriacetate monooxygenase.


ensembl_gene_id: Psed_2625
symbol: Psed_2625
gene_biotype: protein_coding
description:
  PFAM: Dihydrodipicolinate synthetase; KEGG: bxe:Bxe_B2813 putative dihydrodipicolinate synthetase; Belongs to the DapA family.


ensembl_gene_id: Psed_2626
symbol: Psed_2626
gene_biotype: protein_coding
description:
  KEGG: rha:RHA1_ro00274 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR.


ensembl_gene_id: Psed_2628
symbol: Psed_2628
gene_biotype: protein_coding
description:
  PFAM: Sulphate transporter/antisigma-factor antagonist STAS; KEGG: mva:Mvan_1481 anti-sigma-factor antagonist.


ensembl_gene_id: Psed_2629
symbol: Psed_2629
gene_biotype: protein_coding
description:
  KEGG: mil:ML5_4830 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR.


ensembl_gene_id: Psed_2630
symbol: Psed_2630
gene_biotype: protein_coding
description:
  Xenobiotic-transporting ATPase; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: mil:ML5_4831 abc transporter related protein; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_2632
symbol: Psed_2632
gene_biotype: protein_coding
description:
  KEGG: nda:Ndas_2013 intracellular protease, PfpI family; TIGRFAM: Peptidase C56, PfpI; PFAM: ThiJ/PfpI.


ensembl_gene_id: Psed_2633
symbol: Psed_2633
gene_biotype: protein_coding
description:
  TIGRFAM: Thiolase; KEGG: rha:RHA1_ro10318 acetyl-CoA C-acyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Psed_2634
symbol: Psed_2634
gene_biotype: protein_coding
description:
  Glycogen debranching enzyme GlgX; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; TIGRFAM: Glycogen debranching enzyme; KEGG: ace:Acel_1372 glycogen debranching enzyme GlgX; PFAM: Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic domain; Belongs to the glycosyl hydrolase 13 family.


ensembl_gene_id: Psed_2635
symbol: Psed_2635
gene_biotype: protein_coding
description:
  KEGG: gob:Gobs_0834 phage SPO1 DNA polymerase-like protein; TIGRFAM: Phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase-like.


ensembl_gene_id: Psed_2637
symbol: Psed_2637
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine-protein kinase-like domain; KEGG: sro:Sros_3960 serine/threonine protein kinase-like protein; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain.


ensembl_gene_id: Psed_2638
symbol: Psed_2638
gene_biotype: protein_coding
description:
  Polyphosphate kinase 2; KEGG: ske:Sked_14980 hypothetical protein; TIGRFAM: Polyphosphate kinase 2, PA0141; PFAM: Polyphosphate kinase-2-related.


ensembl_gene_id: Psed_2639
symbol: Psed_2639
gene_biotype: protein_coding
description:
  PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: cwo:Cwoe_3024 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Psed_2641
symbol: Psed_2641
gene_biotype: protein_coding
description:
  ATPase associated with various cellular activities AAA_5; KEGG: nca:Noca_0239 ATPase; PFAM: ATPase, AAA-5; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_2642
symbol: Psed_2642
gene_biotype: protein_coding
description:
  KEGG: nca:Noca_0238 VWA containing CoxE family protein; PFAM: vWA containing CoxE-like; SMART: von Willebrand factor, type A.


ensembl_gene_id: Psed_2651
symbol: Psed_2651
gene_biotype: protein_coding
description:
  PFAM: Carbon monoxide dehydrogenase subunit G; KEGG: nca:Noca_0232 carbon monoxide dehydrogenase subunit G.


ensembl_gene_id: Psed_2652
symbol: Psed_2652
gene_biotype: protein_coding
description:
  TIGRFAM: Carbon-monoxide dehydrogenase, large subunit; KEGG: nca:Noca_0230 xanthine dehydrogenase, molybdenum binding subunit apoprotein; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead.


ensembl_gene_id: Psed_2653
symbol: Psed_2653
gene_biotype: protein_coding
description:
  Carbon-monoxide dehydrogenase (acceptor); KEGG: nca:Noca_0229 2Fe-2S iron-sulfur cluster binding domain-containing protein; PFAM: [2Fe-2S]-binding; Ferredoxin.


ensembl_gene_id: Psed_2654
symbol: Psed_2654
gene_biotype: protein_coding
description:
  Carbon-monoxide dehydrogenase (acceptor); KEGG: nca:Noca_0228 molybdopterin dehydrogenase, FAD-binding; PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal.


ensembl_gene_id: Psed_2656
symbol: Psed_2656
gene_biotype: protein_coding
description:
  Carbon-monoxide dehydrogenase (acceptor); KEGG: nml:Namu_5284 molybdopterin dehydrogenase FAD-binding; PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal.


ensembl_gene_id: Psed_2657
symbol: Psed_2657
gene_biotype: protein_coding
description:
  Carbon-monoxide dehydrogenase (acceptor); KEGG: mkm:Mkms_0501 2Fe-2S iron-sulfur cluster binding domain-containing protein; PFAM: [2Fe-2S]-binding; Ferredoxin.


ensembl_gene_id: Psed_2658
symbol: Psed_2658
gene_biotype: protein_coding
description:
  TIGRFAM: Carbon-monoxide dehydrogenase, large subunit; KEGG: nml:Namu_5287 carbon-monoxide dehydrogenase large subunit; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead.


ensembl_gene_id: Psed_2660
symbol: Psed_2660
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: cwo:Cwoe_0256 transcriptional regulator, TetR family.


ensembl_gene_id: Psed_2661
symbol: Psed_2661
gene_biotype: protein_coding
description:
  KEGG: tcu:Tcur_1972 EmrB/QacA subfamily drug resistance transporter; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1.


ensembl_gene_id: Psed_2662
symbol: Psed_2662
gene_biotype: protein_coding
description:
  PFAM: Major facilitator superfamily MFS-1; KEGG: nml:Namu_4792 major facilitator superfamily protein.


ensembl_gene_id: Psed_2666
symbol: Psed_2666
gene_biotype: protein_coding
description:
  KEGG: aoe:Clos_0876 formyl-CoA transferase; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.


ensembl_gene_id: Psed_2667
symbol: Psed_2667
gene_biotype: protein_coding
description:
  GAF domain protein; KEGG: rer:RER_34970 CdaR family transcriptional regulator; PFAM: GAF; SMART: GAF.


ensembl_gene_id: Psed_2671
symbol: Psed_2671
gene_biotype: protein_coding
description:
  KEGG: bxe:Bxe_C0850 putative short-chain dehydrogenase/reductase; PFAM: Short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Psed_2672
symbol: Psed_2672
gene_biotype: protein_coding
description:
  o-succinylbenzoate--CoA ligase; KEGG: amd:AMED_7123 fatty-acyl-CoA synthase; PFAM: AMP-dependent synthetase/ligase.


ensembl_gene_id: Psed_2673
symbol: Psed_2673
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: amd:AMED_7223 TetR family transcriptional regulator.


ensembl_gene_id: Psed_2674
symbol: Psed_2674
gene_biotype: protein_coding
description:
  KEGG: sta:STHERM_c04220 3-oxoacyl-[acyl-carrier-protein] reductase; PFAM: Short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Psed_2675
symbol: Psed_2675
gene_biotype: protein_coding
description:
  KEGG: fri:FraEuI1c_5330 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Psed_2676
symbol: Psed_2676
gene_biotype: protein_coding
description:
  Enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core; KEGG: axy:AXYL_00935 3-hydroxybutyryl-CoA dehydratase 1; Belongs to the enoyl-CoA hydratase/isomerase family.


ensembl_gene_id: Psed_2679
symbol: Psed_2679
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_5223 NADH dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: Psed_2681
symbol: Psed_2681
gene_biotype: protein_coding
description:
  Sarcosine oxidase; KEGG: fal:FRAAL4450 putative monomeric sarcosine oxidase (MSOX); PFAM: FAD dependent oxidoreductase.


ensembl_gene_id: Psed_2683
symbol: Psed_2683
gene_biotype: protein_coding
description:
  SMP-30/Gluconolaconase/LRE-like region-containing protein; PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: sen:SACE_3449 gluconolactonase precursor.


ensembl_gene_id: Psed_2684
symbol: Psed_2684
gene_biotype: protein_coding
description:
  KEGG: cag:Cagg_2751 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Psed_2685
symbol: Psed_2685
gene_biotype: protein_coding
description:
  ABC-type transporter, periplasmic subunit; PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: fre:Franean1_6256 extracellular solute-binding protein.


ensembl_gene_id: Psed_2689
symbol: Psed_2689
gene_biotype: protein_coding
description:
  TIGRFAM: Luciferase-like, F420-dependent oxidoreductase, MSMEG2256, predicted; KEGG: fal:FRAAL4774 putative N5,N10-methylenetetrahydromethanopterin reductase-related protein.


ensembl_gene_id: Psed_2692
symbol: Psed_2692
gene_biotype: protein_coding
description:
  PFAM: Endonuclease/exonuclease/phosphatase; KEGG: kfl:Kfla_5208 endonuclease/exonuclease/phosphatase.


ensembl_gene_id: Psed_2693
symbol: Psed_2693
gene_biotype: protein_coding
description:
  PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: msp:Mspyr1_02660 dinucleotide-binding enzyme.


ensembl_gene_id: Psed_2695
symbol: Psed_2695
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sma:SAV_7471 TetR family transcriptional regulator.


ensembl_gene_id: Psed_2696
symbol: Psed_2696
gene_biotype: protein_coding
description:
  phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).


ensembl_gene_id: Psed_2697
symbol: Psed_2697
gene_biotype: protein_coding
description:
  TIGRFAM: Phenylacetic acid degradation protein PaaN; KEGG: amd:AMED_1563 phenylacetic acid degradation protein PaaZ; PFAM: MaoC-like dehydratase; Aldehyde dehydrogenase domain.


ensembl_gene_id: Psed_2698
symbol: Psed_2698
gene_biotype: protein_coding
description:
  Enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core; KEGG: sgr:SGR_2381 putative enoyl-CoA hydratase/isomerase.


ensembl_gene_id: Psed_2699
symbol: Psed_2699
gene_biotype: protein_coding
description:
  PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: scb:SCAB_45331 transcriptional regulator.


ensembl_gene_id: Psed_2700
symbol: Psed_2700
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_3544 phenylacetate-CoA oxygenase subunit PaaA; TIGRFAM: Phenylacetate-CoA oxygenase, PaaG subunit; PFAM: Phenylacetic acid catabolic.


ensembl_gene_id: Psed_2701
symbol: Psed_2701
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_3545 phenylacetate-CoA oxygenase subunit PaaB; TIGRFAM: Phenylacetic acid degradation B; PFAM: Phenylacetic acid degradation B.


ensembl_gene_id: Psed_2702
symbol: Psed_2702
gene_biotype: protein_coding
description:
  phenylacetate-CoA oxygenase, PaaI subunit; KEGG: sen:SACE_3546 putative phenylacetic acid degradation protein; TIGRFAM: Phenylacetate-CoA oxygenase, PaaI subunit; PFAM: Phenylacetic acid catabolic.


ensembl_gene_id: Psed_2703
symbol: Psed_2703
gene_biotype: protein_coding
description:
  phenylacetate-CoA oxygenase, PaaJ subunit; KEGG: sen:SACE_3547 phenylacetic acid degradation protein; TIGRFAM: Phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: Domain of unknown function DUF59.


ensembl_gene_id: Psed_2704
symbol: Psed_2704
gene_biotype: protein_coding
description:
  TIGRFAM: Phenylacetate-CoA oxygenase/reductase, PaaK subunit; KEGG: sen:SACE_3548 putative phenylacetic acid degradation NADH oxidoreductase; PFAM: Ferredoxin; Oxidoreductase, FAD-binding domain; Oxidoreductase FAD/NAD(P)-binding.


ensembl_gene_id: Psed_2706
symbol: Psed_2706
gene_biotype: protein_coding
description:
  PFAM: Major facilitator superfamily MFS-1; KEGG: gob:Gobs_0263 major facilitator superfamily protein.


ensembl_gene_id: Psed_2708
symbol: Psed_2708
gene_biotype: protein_coding
description:
  TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobF, precorrin-6A synthase; KEGG: fra:Francci3_2657 precorrin 6A synthase; PFAM: Tetrapyrrole methylase.


ensembl_gene_id: Psed_2709
symbol: Psed_2709
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_6303 metal ion transporter, Nramp family; TIGRFAM: Natural resistance-associated macrophage protein; PFAM: Natural resistance-associated macrophage protein.


ensembl_gene_id: Psed_2711
symbol: Psed_2711
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: amd:AMED_7022 TetR family transcriptional regulator.


ensembl_gene_id: Psed_2713
symbol: Psed_2713
gene_biotype: protein_coding
description:
  Ferric uptake regulator, Fur family; PFAM: Ferric-uptake regulator; KEGG: mil:ML5_4698 ferric uptake regulator, fur family; Belongs to the Fur family.


ensembl_gene_id: Psed_2715
symbol: Psed_2715
gene_biotype: protein_coding
description:
  PFAM: Streptomyces sporulation/cell division protein SsgA; KEGG: amd:AMED_0264 sporulation and cell division protein SsgA.


ensembl_gene_id: Psed_2717
symbol: Psed_2717
gene_biotype: protein_coding
description:
  Butyrate--CoA ligase; KEGG: sen:SACE_3902 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase.


ensembl_gene_id: Psed_2719
symbol: Psed_2719
gene_biotype: protein_coding
description:
  KEGG: kfl:Kfla_0937 flavin reductase domain protein FMN-binding protein; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding.


ensembl_gene_id: Psed_2720
symbol: cobD
gene_biotype: protein_coding
description:
  Cobalamin biosynthesis protein cbiB; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.


ensembl_gene_id: Psed_2722
symbol: cobQ
gene_biotype: protein_coding
description:
  Cobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.


ensembl_gene_id: Psed_2723
symbol: Psed_2723
gene_biotype: protein_coding
description:
  Magnesium chelatase; PFAM: von Willebrand factor, type A; ATPase, AAA-5; KEGG: sen:SACE_5965 putative magnesium-chelatase subunit; SMART: von Willebrand factor, type A; ATPase, AAA+ type, core.


ensembl_gene_id: Psed_2724
symbol: Psed_2724
gene_biotype: protein_coding
description:
  TIGRFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR; KEGG: amd:AMED_7053 cob(I)alamin adenosyltransferase; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR.


ensembl_gene_id: Psed_2725
symbol: cobB
gene_biotype: protein_coding
description:
  Cobyrinic acid A,C-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.


ensembl_gene_id: Psed_2726
symbol: Psed_2726
gene_biotype: protein_coding
description:
  PFAM: Cobalamin (vitamin B12) biosynthesis CbiG, core; KEGG: tcu:Tcur_1317 precorrin-3B C17-methyltransferase.


ensembl_gene_id: Psed_2727
symbol: Psed_2727
gene_biotype: protein_coding
description:
  uroporphyrin-III C-methyltransferase; KEGG: nfa:nfa40770 putative uroporphyrinogen III methylase; TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; Sirohaem synthase, N-terminal; PFAM: Tetrapyrrole methylase.


ensembl_gene_id: Psed_2730
symbol: cobT
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).


ensembl_gene_id: Psed_2731
symbol: dinB
gene_biotype: protein_coding
description:
  DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.


ensembl_gene_id: Psed_2734
symbol: Psed_2734
gene_biotype: protein_coding
description:
  Butyryl-CoA dehydrogenase; KEGG: mpt:Mpe_A2676 acetyl-coenzyme A dehydrogenase, medium chain; PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1.


ensembl_gene_id: Psed_2735
symbol: Psed_2735
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: amd:AMED_1946 TetR family transcriptional regulator.


ensembl_gene_id: Psed_2737
symbol: Psed_2737
gene_biotype: protein_coding
description:
  Pentachlorophenol monooxygenase; KEGG: amd:AMED_1944 FAD-dependent oxidoreductase; PFAM: Monooxygenase, FAD-binding.


ensembl_gene_id: Psed_2738
symbol: Psed_2738
gene_biotype: protein_coding
description:
  PFAM: 4'-phosphopantetheinyl transferase; KEGG: kfl:Kfla_4144 4'-phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily.


ensembl_gene_id: Psed_2741
symbol: Psed_2741
gene_biotype: protein_coding
description:
  SMART: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, subunit B; KEGG: rer:RER_52840 3-oxoadipate CoA-transferase beta subunit; PFAM: Coenzyme A transferase.


ensembl_gene_id: Psed_2742
symbol: Psed_2742
gene_biotype: protein_coding
description:
  SMART: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, subunit A; KEGG: req:REQ_33550 3-oxoadipate CoA-transferase ScoA; PFAM: Coenzyme A transferase.


ensembl_gene_id: Psed_2744
symbol: Psed_2744
gene_biotype: protein_coding
description:
  KEGG: fri:FraEuI1c_1424 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3.


ensembl_gene_id: Psed_2747
symbol: Psed_2747
gene_biotype: protein_coding
description:
  TIGRFAM: Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; KEGG: req:REQ_33600 IclR family transcriptional regulator; SMART: Transcription regulator IclR, N-terminal.


ensembl_gene_id: Psed_2750
symbol: Psed_2750
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_4209 AraC family transcriptional regulator; PFAM: ThiJ/PfpI; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain.


ensembl_gene_id: Psed_2751
symbol: Psed_2751
gene_biotype: protein_coding
description:
  Ferredoxin--NADP(+) reductase; KEGG: mrb:Mrub_3035 FAD-dependent pyridine nucleotide-disulfide oxidoreductase; PFAM: Conserved hypothetical protein CHP00275, flavoprotein HI0933-like.


ensembl_gene_id: Psed_2753
symbol: Psed_2753
gene_biotype: protein_coding
description:
  GntR domain protein; KEGG: amd:AMED_3870 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR.


ensembl_gene_id: Psed_2755
symbol: Psed_2755
gene_biotype: protein_coding
description:
  Rieske (2Fe-2S) iron-sulfur domain protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: sen:SACE_1686 ubiquinol-cytochrome c reductase iron-sulfur subunit.


ensembl_gene_id: Psed_2756
symbol: Psed_2756
gene_biotype: protein_coding
description:
  PFAM: Cytochrome c, class I; KEGG: amd:AMED_2201 ubiquinol-cytochrome c reductase cytochrome c subunit.


ensembl_gene_id: Psed_2759
symbol: trpD
gene_biotype: protein_coding
description:
  Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).


ensembl_gene_id: Psed_2760
symbol: Psed_2760
gene_biotype: protein_coding
description:
  PFAM: Transcription regulator AsnC-type, C-terminal; KEGG: svi:Svir_10710 transcriptional regulator, AsnC family.


ensembl_gene_id: Psed_2761
symbol: Psed_2761
gene_biotype: protein_coding
description:
  DNA polymerase III, epsilon subunit; SMART: Exonuclease; Excinuclease ABC, C subunit, N-terminal; TIGRFAM: DNA polymerase III, epsilon subunit; KEGG: sen:SACE_1689 hypothetical protein; PFAM: Exonuclease, RNase T/DNA polymerase III; Excinuclease ABC, C subunit, N-terminal.


ensembl_gene_id: Psed_2768
symbol: Psed_2768
gene_biotype: protein_coding
description:
  Metallophosphoesterase; PFAM: Metallo-dependent phosphatase; KEGG: amd:AMED_2447 metallophosphoesterase.


ensembl_gene_id: Psed_2774
symbol: Psed_2774
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_1702 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase.


ensembl_gene_id: Psed_2778
symbol: Psed_2778
gene_biotype: protein_coding
description:
  Phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: DAHP synthetase, class II; KEGG: ami:Amir_1395 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase, class II; Belongs to the class-II DAHP synthase family.


ensembl_gene_id: Psed_2779
symbol: Psed_2779
gene_biotype: protein_coding
description:
  PFAM: Serine/threonine-protein kinase-like domain; PASTA; KEGG: nml:Namu_3222 serine/threonine protein kinase with PASTA sensor(s); SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; PASTA.


ensembl_gene_id: Psed_2781
symbol: Psed_2781
gene_biotype: protein_coding
description:
  Phytoene synthase; KEGG: ami:Amir_3811 squalene/phytoene synthase; PFAM: Squalene/phytoene synthase.


ensembl_gene_id: Psed_2784
symbol: Psed_2784
gene_biotype: protein_coding
description:
  Geranyltranstransferase; KEGG: svi:Svir_27930 geranylgeranyl pyrophosphate synthase; PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: Psed_2785
symbol: Psed_2785
gene_biotype: protein_coding
description:
  TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: sen:SACE_1715 5,10-methylenetetrahydrofolate reductase; PFAM: Methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.


ensembl_gene_id: Psed_2795
symbol: Psed_2795
gene_biotype: protein_coding
description:
  Transglutaminase domain-containing protein; KEGG: sen:SACE_5871 transglutaminase-like; PFAM: Transglutaminase-like; SMART: Transglutaminase-like.


ensembl_gene_id: Psed_2798
symbol: mraZ
gene_biotype: protein_coding
description:
  TIGRFAM: MraZ; HAMAP: MraZ; KEGG: amd:AMED_6261 MraZ protein; PFAM: MraZ domain; Belongs to the MraZ family.


ensembl_gene_id: Psed_2799
symbol: rsmH
gene_biotype: protein_coding
description:
  Ribosomal RNA small subunit methyltransferase H; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.


ensembl_gene_id: Psed_2800
symbol: Psed_2800
gene_biotype: protein_coding
description:
  PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: sen:SACE_5864 putative penicillin-binding (cell division related) protein.


ensembl_gene_id: Psed_2801
symbol: murE
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.


ensembl_gene_id: Psed_2802
symbol: murF
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.


ensembl_gene_id: Psed_2803
symbol: mraY
gene_biotype: protein_coding
description:
  Phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.


ensembl_gene_id: Psed_2804
symbol: murD
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.


ensembl_gene_id: Psed_2805
symbol: Psed_2805
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_5852 cell division membrane protein; TIGRFAM: Cell division protein FtsW; PFAM: Cell cycle protein; Belongs to the SEDS family.


ensembl_gene_id: Psed_2806
symbol: murG
gene_biotype: protein_coding
description:
  Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.


ensembl_gene_id: Psed_2809
symbol: ftsZ
gene_biotype: protein_coding
description:
  Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.


ensembl_gene_id: Psed_2810
symbol: Psed_2810
gene_biotype: protein_coding
description:
  Multi-copper polyphenol oxidoreductase, laccase; KEGG: svi:Svir_27360 conserved hypothetical protein TIGR00726; TIGRFAM: Multi-copper polyphenol oxidoreductase, laccase; PFAM: Multi-copper polyphenol oxidoreductase, laccase; Belongs to the multicopper oxidase YfiH/RL5 family.


ensembl_gene_id: Psed_2811
symbol: Psed_2811
gene_biotype: protein_coding
description:
  Protein of unknown function UPF0001; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.


ensembl_gene_id: Psed_2812
symbol: sepF
gene_biotype: protein_coding
description:
  Cell division protein sepF; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA.


ensembl_gene_id: Psed_2813
symbol: Psed_2813
gene_biotype: protein_coding
description:
  Protein of unknown function YGGT; PFAM: Uncharacterised protein family Ycf19; KEGG: svi:Svir_27330 YGGT family protein.


ensembl_gene_id: Psed_2814
symbol: Psed_2814
gene_biotype: protein_coding
description:
  DivIVA domain protein; KEGG: sen:SACE_5830 cell division initiation protein; TIGRFAM: DivIVA domain; PFAM: DivIVA.


ensembl_gene_id: Psed_2816
symbol: ileS
gene_biotype: protein_coding
description:
  Isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily.


ensembl_gene_id: Psed_2818
symbol: Psed_2818
gene_biotype: protein_coding
description:
  PFAM: Conserved hypothetical protein CHP00245; KEGG: mil:ML5_2013 abc transport system permease protein.


ensembl_gene_id: Psed_2821
symbol: Psed_2821
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; KEGG: sma:SAV_4878 two-component system response regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal.


ensembl_gene_id: Psed_2822
symbol: Psed_2822
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; KEGG: sma:SAV_4879 two-component system sensor kinase.


ensembl_gene_id: Psed_2825
symbol: Psed_2825
gene_biotype: protein_coding
description:
  PFAM: Cation/H+ exchanger; Regulator of K+ conductance, C-terminal; KEGG: ami:Amir_5749 potassium/proton antiporter.


ensembl_gene_id: Psed_2826
symbol: Psed_2826
gene_biotype: protein_coding
description:
  Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: Psed_2831
symbol: Psed_2831
gene_biotype: protein_coding
description:
  DNA polymerase III, alpha subunit; SMART: Polymerase/histidinol phosphatase, N-terminal; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: ace:Acel_1054 DNA polymerase III subunit alpha; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type.


ensembl_gene_id: Psed_2834
symbol: Psed_2834
gene_biotype: protein_coding
description:
  Transcriptional regulator, PaaX family; PFAM: PaaX-like, C-terminal; PaaX-like, N-terminal; KEGG: cai:Caci_2009 transcriptional regulator, PaaX family.


ensembl_gene_id: Psed_2835
symbol: bioA
gene_biotype: protein_coding
description:
  Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily.


ensembl_gene_id: Psed_2838
symbol: bioD
gene_biotype: protein_coding
description:
  Dethiobiotin synthetase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.


ensembl_gene_id: Psed_2839
symbol: bioB
gene_biotype: protein_coding
description:
  Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.


ensembl_gene_id: Psed_2843
symbol: Psed_2843
gene_biotype: protein_coding
description:
  Peptidase S16 lon domain protein; KEGG: amd:AMED_2221 ATP-dependent protease Lon; PFAM: Peptidase S16, lon N-terminal; SMART: Peptidase S16, lon N-terminal.


ensembl_gene_id: Psed_2845
symbol: nadA
gene_biotype: protein_coding
description:
  Quinolinate synthase A; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.


ensembl_gene_id: Psed_2847
symbol: Psed_2847
gene_biotype: protein_coding
description:
  TIGRFAM: Nicotinate-nucleotide pyrophosphorylase; KEGG: ami:Amir_5728 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal; Belongs to the NadC/ModD family.


ensembl_gene_id: Psed_2848
symbol: hisD
gene_biotype: protein_coding
description:
  Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.


ensembl_gene_id: Psed_2849
symbol: hisC
gene_biotype: protein_coding
description:
  PFAM: Aminotransferase, class I/classII; TIGRFAM: Histidinol-phosphate aminotransferase; HAMAP: Histidinol-phosphate aminotransferase; KEGG: sen:SACE_5777 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.


ensembl_gene_id: Psed_2850
symbol: hisB
gene_biotype: protein_coding
description:
  HAMAP: Imidazoleglycerol-phosphate dehydratase; KEGG: amd:AMED_2253 imidazoleglycerol-phosphate dehydratase; PFAM: Imidazoleglycerol-phosphate dehydratase.


ensembl_gene_id: Psed_2851
symbol: hisH
gene_biotype: protein_coding
description:
  Imidazole glycerol phosphate synthase subunit hisH; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.


ensembl_gene_id: Psed_2853
symbol: Psed_2853
gene_biotype: protein_coding
description:
  PFAM: Methionine synthase, vitamin-B12 independent; KEGG: bbt:BBta_2188 methionine synthase (B12-independent).


ensembl_gene_id: Psed_2854
symbol: hisA
gene_biotype: protein_coding
description:
  1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino) imidazole-4-carboxamide isomerase; PFAM: Histidine biosynthesis; TIGRFAM: Bifunctional HisA/TrpF; HAMAP: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; KEGG: ami:Amir_5712 phosphoribosyl isomerase A.


ensembl_gene_id: Psed_2855
symbol: hisF
gene_biotype: protein_coding
description:
  Imidazole glycerol phosphate synthase subunit hisF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.


ensembl_gene_id: Psed_2856
symbol: hisI
gene_biotype: protein_coding
description:
  Phosphoribosyl-AMP cyclohydrolase; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.


ensembl_gene_id: Psed_2859
symbol: Psed_2859
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; KEGG: amd:AMED_2841 two-component system histidine kinase.


ensembl_gene_id: Psed_2860
symbol: Psed_2860
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; KEGG: mau:Micau_1043 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain.


ensembl_gene_id: Psed_2861
symbol: Psed_2861
gene_biotype: protein_coding
description:
  Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sen:SACE_5754 TetR family transcriptional regulator.


ensembl_gene_id: Psed_2862
symbol: trpE
gene_biotype: protein_coding
description:
  Anthranilate synthase component I; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...]


ensembl_gene_id: Psed_2863
symbol: Psed_2863
gene_biotype: protein_coding
description:
  PFAM: Trp biosynthesis associated, transmembrane protein, Oprn/Chp; KEGG: cai:Caci_5713 hypothetical protein.


ensembl_gene_id: Psed_2864
symbol: trpC
gene_biotype: protein_coding
description:
  KEGG: amd:AMED_2293 indole-3-glycerol phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase; Belongs to the TrpC family.


ensembl_gene_id: Psed_2865
symbol: trpB
gene_biotype: protein_coding
description:
  Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.


ensembl_gene_id: Psed_2866
symbol: trpA
gene_biotype: protein_coding
description:
  Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.


ensembl_gene_id: Psed_2867
symbol: lgt
gene_biotype: protein_coding
description:
  Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.


ensembl_gene_id: Psed_2868
symbol: Psed_2868
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_5689 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02453; PFAM: Conserved hypothetical protein CHP02453.


ensembl_gene_id: Psed_2869
symbol: Psed_2869
gene_biotype: protein_coding
description:
  TIGRFAM: Pyruvate kinase; KEGG: ami:Amir_5687 pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, C-terminal-like; Belongs to the pyruvate kinase family.


ensembl_gene_id: Psed_2872
symbol: Psed_2872
gene_biotype: protein_coding
description:
  TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: kra:Krad_3362 O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme.


ensembl_gene_id: Psed_2875
symbol: mdh
gene_biotype: protein_coding
description:
  Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.


ensembl_gene_id: Psed_2878
symbol: Psed_2878
gene_biotype: protein_coding
description:
  Malto-oligosyltrehalose trehalohydrolase; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; TIGRFAM: Malto-oligosyltrehalose trehalohydrolase; KEGG: amd:AMED_2594 maltooligosyltrehalose trehalohydrolase; PFAM: Glycosyl hydrolase, family 13, catalytic domain; Glycoside hydrolase, family 13, N-terminal.


ensembl_gene_id: Psed_2879
symbol: Psed_2879
gene_biotype: protein_coding
description:
  Malto-oligosyltrehalose synthase; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; TIGRFAM: Malto-oligosyltrehalose synthase; KEGG: amd:AMED_2593 maltooligosyl trehalose synthase; PFAM: Glycosyl hydrolase, family 13, catalytic domain.


ensembl_gene_id: Psed_2880
symbol: Psed_2880
gene_biotype: protein_coding
description:
  Glycogen debranching enzyme GlgX; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; TIGRFAM: Glycogen debranching enzyme; KEGG: amd:AMED_2592 glycogen debranching enzyme GlgX; PFAM: Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic domain; Belongs to the glycosyl hydrolase 13 family.


ensembl_gene_id: Psed_2881
symbol: Psed_2881
gene_biotype: protein_coding
description:
  Putative F420-dependent enzyme; KEGG: kfl:Kfla_3151 pyridoxamine 5'-phosphate oxidase-related FMN-binding protein; TIGRFAM: F420-binding domain, putative; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain.


ensembl_gene_id: Psed_2882
symbol: Psed_2882
gene_biotype: protein_coding
description:
  PFAM: Histidine triad (HIT) protein; KEGG: mlu:Mlut_07820 HIT family hydrolase, diadenosine tetraphosphate hydrolase.


ensembl_gene_id: Psed_2883
symbol: Psed_2883
gene_biotype: protein_coding
description:
  KEGG: req:REQ_41490 phosphoglycerate/bisphosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1.


ensembl_gene_id: Psed_2886
symbol: Psed_2886
gene_biotype: protein_coding
description:
  TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: amd:AMED_1262 diguanylate cyclase; SMART: Diguanylate cyclase, predicted.


ensembl_gene_id: Psed_2887
symbol: Psed_2887
gene_biotype: protein_coding
description:
  TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: amd:AMED_1947 GGDEF domain-containing diguanylate cyclase; SMART: Diguanylate cyclase, predicted.


ensembl_gene_id: Psed_2888
symbol: dxs
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.


ensembl_gene_id: Psed_2889
symbol: Psed_2889
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; KEGG: svi:Svir_24140 response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal.


ensembl_gene_id: Psed_2890
symbol: Psed_2890
gene_biotype: protein_coding
description:
  Histidine kinase; KEGG: sen:SACE_1818 two-component sensor (kinase); PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain.


ensembl_gene_id: Psed_2891
symbol: Psed_2891
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_1548 3'-5' exonuclease; PFAM: 3'-5' exonuclease; Helicase/RNase D C-terminal, HRDC domain; SMART: 3'-5' exonuclease; Helicase/RNase D C-terminal, HRDC domain.


ensembl_gene_id: Psed_2892
symbol: Psed_2892
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_1549 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal.


ensembl_gene_id: Psed_2894
symbol: hemE
gene_biotype: protein_coding
description:
  Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.


ensembl_gene_id: Psed_2895
symbol: Psed_2895
gene_biotype: protein_coding
description:
  Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.


ensembl_gene_id: Psed_2899
symbol: Psed_2899
gene_biotype: protein_coding
description:
  TIGRFAM: Methionine sulphoxide reductase B; KEGG: rop:ROP_68470 peptide methionine sulfoxide reductase MsrB; PFAM: Methionine sulphoxide reductase B.


ensembl_gene_id: Psed_2901
symbol: Psed_2901
gene_biotype: protein_coding
description:
  KEGG: sen:SACE_1849 DNA ligase (ATP); TIGRFAM: DNA polymerase LigD, polymerase domain; PFAM: DNA primase, small subunit.


ensembl_gene_id: Psed_2903
symbol: Psed_2903
gene_biotype: protein_coding
description:
  TAP domain protein; PFAM: Peptidase S33, tripeptidyl-peptidase C-terminal; KEGG: sen:SACE_1857 proteinase (secreted protein).


ensembl_gene_id: Psed_2910
symbol: Psed_2910
gene_biotype: protein_coding
description:
  Protein of unknown function DUF322; PFAM: Alkaline shock protein Asp23; KEGG: sen:SACE_1868 stress-like protein.


ensembl_gene_id: Psed_2911
symbol: Psed_2911
gene_biotype: protein_coding
description:
  PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: ami:Amir_1580 bifunctional deaminase-reductase domain protein.


ensembl_gene_id: Psed_2913
symbol: Psed_2913
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: ABC transporter permease protein; KEGG: sen:SACE_0412 Fe(3+) enterobactin transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: Psed_2914
symbol: Psed_2914
gene_biotype: protein_coding
description:
  Iron-chelate-transporting ATPase; PFAM: ABC transporter-like; KEGG: sro:Sros_7988 ABC transporter related protein; SMART: ATPase, AAA+ type, core.


ensembl_gene_id: Psed_2915
symbol: Psed_2915
gene_biotype: protein_coding
description:
  KEGG: nml:Namu_3539 hypothetical protein; TIGRFAM: Polyphosphate:nucleotide phosphotransferase, PPK2; PFAM: Polyphosphate kinase-2-related.


ensembl_gene_id: Psed_2919
symbol: Psed_2919
gene_biotype: protein_coding
description:
  PFAM: Cyclopropane-fatty-acyl-phospholipid/mycolic acid synthase; KEGG: sen:SACE_1992 cyclopropane-fatty-acyl-phospholipid synthase; SMART: Polyketide synthase, methyltransferase domain.


ensembl_gene_id: Psed_2920
symbol: Psed_2920
gene_biotype: protein_coding
description:
  Acyltransferase, WS/DGAT/MGAT; KEGG: sen:SACE_6439 hypothetical protein; TIGRFAM: Acyltransferase, WS/DGAT/MGAT; PFAM: O-acyltransferase, WSD1, N-terminal; Belongs to the long-chain O-acyltransferase family.


ensembl_gene_id: Psed_2922
symbol: Psed_2922
gene_biotype: protein_coding
description:
  o-succinylbenzoate--CoA ligase; KEGG: eli:ELI_02000 acyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase.


ensembl_gene_id: Psed_2924
symbol: Psed_2924
gene_biotype: protein_coding
description:
  PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: cfl:Cfla_0293 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR.


ensembl_gene_id: Psed_2925
symbol: Psed_2925
gene_biotype: protein_coding
description:
  KEGG: ami:Amir_1569 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal.


ensembl_gene_id: Psed_2926
symbol: Psed_2926
gene_biotype: protein_coding
description:
  3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoAhydratase; KEGG: mjl:Mjls_1207 dehydratase; PFAM: MaoC-like dehydratase.


ensembl_gene_id: Psed_2927
symbol: Psed_2927
gene_biotype: protein_coding
description:
  ABC-type transporter, periplasmic subunit; PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: fre:Franean1_3398 extracellular solute-binding protein.


ensembl_gene_id: Psed_2929
symbol: Psed_2929
gene_biotype: protein_coding
description:
  Protein tyrosine phosphatase; KEGG: sen:SACE_1579 putative low molecular weight protein-tyrosine-phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight.


