# geneInfo

ensembl_gene_id: Theco_0002
symbol: pepT
gene_biotype: protein_coding
description:
  Peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.


ensembl_gene_id: Theco_0004
symbol: AGA56263.1
gene_biotype: protein_coding
description:
  PFAM: Methylpurine-DNA glycosylase (MPG); TIGRFAM: DNA-3-methyladenine glycosylase (3mg); Belongs to the DNA glycosylase MPG family.


ensembl_gene_id: Theco_0005
symbol: AGA56264.1
gene_biotype: protein_coding
description:
  Theronine dehydrogenase-like Zn-dependent dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase.


ensembl_gene_id: Theco_0006
symbol: AGA56265.1
gene_biotype: protein_coding
description:
  Sulfate permease-like transporter, MFS superfamily; PFAM: Sulfate transporter family; TIGRFAM: high affinity sulphate transporter 1.


ensembl_gene_id: Theco_0008
symbol: greA
gene_biotype: protein_coding
description:
  Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.


ensembl_gene_id: Theco_0010
symbol: AGA56269.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Bacterial transcription activator, effector binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family.


ensembl_gene_id: Theco_0011
symbol: AGA56270.1
gene_biotype: protein_coding
description:
  Beta-1,4-xylanase; PFAM: Glycosyl hydrolase family 10; Domain of unknown function (DUF1083); Carbohydrate binding domain; S-layer homology domain.


ensembl_gene_id: Theco_0012
symbol: AGA56271.1
gene_biotype: protein_coding
description:
  Type I restriction-modification system methyltransferase subunit; PFAM: N-6 DNA Methylase; TIGRFAM: DNA binding domain, excisionase family.


ensembl_gene_id: Theco_0014
symbol: AGA56273.1
gene_biotype: protein_coding
description:
  PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; Multidrug resistance protein.


ensembl_gene_id: Theco_0017
symbol: cysI
gene_biotype: protein_coding
description:
  Sulfite reductase (NADPH) hemoprotein, beta-component; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.


ensembl_gene_id: Theco_0018
symbol: AGA56276.1
gene_biotype: protein_coding
description:
  Sulfite reductase (NADPH) flavoprotein, alpha-component; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH -> FAD -> FMN to the hemoprotein component.


ensembl_gene_id: Theco_0020
symbol: AGA56278.1
gene_biotype: protein_coding
description:
  ABC-type sugar transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.


ensembl_gene_id: Theco_0021
symbol: AGA56279.1
gene_biotype: protein_coding
description:
  Permease component of ABC-type sugar transporter; PFAM: Binding-protein-dependent transport system inner membrane component.


ensembl_gene_id: Theco_0023
symbol: AGA56281.1
gene_biotype: protein_coding
description:
  PFAM: Response regulator receiver domain; Bacterial regulatory helix-turn-helix proteins, AraC family.


ensembl_gene_id: Theco_0024
symbol: AGA56282.1
gene_biotype: protein_coding
description:
  ABC-type sugar transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein.


ensembl_gene_id: Theco_0025
symbol: AGA56283.1
gene_biotype: protein_coding
description:
  Putative oxidoreductase, LLM family; PFAM: Luciferase-like monooxygenase; TIGRFAM: probable oxidoreductase, LLM family.


ensembl_gene_id: Theco_0028
symbol: AGA56286.1
gene_biotype: protein_coding
description:
  Transcriptional regulator; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Theco_0031
symbol: AGA56289.1
gene_biotype: protein_coding
description:
  Dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein; PFAM: short chain dehydrogenase.


ensembl_gene_id: Theco_0033
symbol: AGA56291.1
gene_biotype: protein_coding
description:
  ABC-type Fe3+-hydroxamate transport system, periplasmic component; PFAM: Periplasmic binding protein.


ensembl_gene_id: Theco_0034
symbol: AGA56292.1
gene_biotype: protein_coding
description:
  ABC-type Fe3+-siderophore transport system, permease component; PFAM: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: Theco_0039
symbol: AGA56297.1
gene_biotype: protein_coding
description:
  Parallel beta-helix repeat (two copies); PFAM: Periplasmic copper-binding protein (NosD); TIGRFAM: parallel beta-helix repeat (two copies).


ensembl_gene_id: Theco_0041
symbol: AGA56299.1
gene_biotype: protein_coding
description:
  ABC-type oligopeptide transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle.


ensembl_gene_id: Theco_0042
symbol: AGA56300.1
gene_biotype: protein_coding
description:
  ABC-type dipeptide/oligopeptide/nickel transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.


ensembl_gene_id: Theco_0044
symbol: AGA56302.1
gene_biotype: protein_coding
description:
  PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Theco_0046
symbol: AGA56304.1
gene_biotype: protein_coding
description:
  LysM repeat-containing protein; PFAM: Immunoglobulin-like domain of bacterial spore germination; LysM domain.


ensembl_gene_id: Theco_0050
symbol: mqo
gene_biotype: protein_coding
description:
  Malate:quinone-oxidoreductase; PFAM: Malate:quinone oxidoreductase (Mqo); TIGRFAM: malate:quinone-oxidoreductase.


ensembl_gene_id: Theco_0055
symbol: AGA56312.1
gene_biotype: protein_coding
description:
  Lactoylglutathione lyase-like lyase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.


ensembl_gene_id: Theco_0061
symbol: AGA56318.1
gene_biotype: protein_coding
description:
  Permease component of ribose/xylose/arabinose/galactoside ABC-type transporters; PFAM: Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Theco_0072
symbol: AGA56328.1
gene_biotype: protein_coding
description:
  Site-specific recombinase XerD; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; Belongs to the 'phage' integrase family.


ensembl_gene_id: Theco_0080
symbol: AGA56335.1
gene_biotype: protein_coding
description:
  Heavy metal-translocating P-type ATPase, Cd/Co/Hg/Pb/Zn-transporting; PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase.


ensembl_gene_id: Theco_0082
symbol: mntH
gene_biotype: protein_coding
description:
  Natural resistance-associated macrophage protein metal ion transporter NRAMP; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family.


ensembl_gene_id: Theco_0095
symbol: AGA56347.1
gene_biotype: protein_coding
description:
  Putative lactoylglutathione lyase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.


ensembl_gene_id: Theco_0099
symbol: AGA56351.1
gene_biotype: protein_coding
description:
  ABC-type Fe3+ transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.


ensembl_gene_id: Theco_0100
symbol: AGA56352.1
gene_biotype: protein_coding
description:
  ABC-type spermidine/putrescine transport system, ATPase component; PFAM: ABC transporter; TOBE domain.


ensembl_gene_id: Theco_0101
symbol: AGA56353.1
gene_biotype: protein_coding
description:
  ABC-type Fe3+ transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein.


ensembl_gene_id: Theco_0105
symbol: AGA56356.1
gene_biotype: protein_coding
description:
  PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms); Belongs to the aspartate-semialdehyde dehydrogenase family.


ensembl_gene_id: Theco_0108
symbol: def
gene_biotype: protein_coding
description:
  Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.


ensembl_gene_id: Theco_0110
symbol: AGA56360.1
gene_biotype: protein_coding
description:
  DNA-binding domain-containing protein, AraC-type; PFAM: Bacterial transcription activator, effector binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family.


ensembl_gene_id: Theco_0114
symbol: AGA56364.1
gene_biotype: protein_coding
description:
  Alpha-mannosidase; PFAM: Glycosyl hydrolases family 38 C-terminal domain; Glycosyl hydrolases family 38 N-terminal domain; Alpha mannosidase, middle domain; Raffinose synthase or seed inhibition protein Sip1.


ensembl_gene_id: Theco_0125
symbol: AGA56374.1
gene_biotype: protein_coding
description:
  PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); Group II intron, maturase-specific domain.


ensembl_gene_id: Theco_0130
symbol: rlmH
gene_biotype: protein_coding
description:
  rRNA large subunit m3Psi methyltransferase RlmH; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.


ensembl_gene_id: Theco_0141
symbol: AGA56388.1
gene_biotype: protein_coding
description:
  PAS domain S-box; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box.


ensembl_gene_id: Theco_0149
symbol: AGA56396.1
gene_biotype: protein_coding
description:
  Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein); PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit.


ensembl_gene_id: Theco_0154
symbol: flgK
gene_biotype: protein_coding
description:
  Flagellar hook-associated protein FlgK; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: flagellar hook-associated protein FlgK.


ensembl_gene_id: Theco_0155
symbol: AGA56402.1
gene_biotype: protein_coding
description:
  Flagellar hook-associated protein 3; PFAM: Bacterial flagellin N-terminal helical region; Bacterial flagellin C-terminal helical region; TIGRFAM: flagellar hook-associated protein 3; Belongs to the bacterial flagellin family.


ensembl_gene_id: Theco_0157
symbol: fliW
gene_biotype: protein_coding
description:
  Hypothetical protein; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum.


ensembl_gene_id: Theco_0158
symbol: csrA
gene_biotype: protein_coding
description:
  Carbon storage regulator CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.


ensembl_gene_id: Theco_0159
symbol: AGA56406.1
gene_biotype: protein_coding
description:
  Flagellin/flagellar hook associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.


ensembl_gene_id: Theco_0161
symbol: AGA56408.1
gene_biotype: protein_coding
description:
  Flagellar capping protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.


ensembl_gene_id: Theco_0167
symbol: AGA56414.1
gene_biotype: protein_coding
description:
  PFAM: Lipid-A-disaccharide synthetase; TIGRFAM: pseudaminic acid biosynthesis-associated protein PseG.


ensembl_gene_id: Theco_0171
symbol: AGA56418.1
gene_biotype: protein_coding
description:
  PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family; TIGRFAM: UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: Theco_0173
symbol: hpf
gene_biotype: protein_coding
description:
  Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.


ensembl_gene_id: Theco_0174
symbol: secA
gene_biotype: protein_coding
description:
  Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family.


ensembl_gene_id: Theco_0175
symbol: prfB
gene_biotype: protein_coding
description:
  Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.


ensembl_gene_id: Theco_0180
symbol: argC
gene_biotype: protein_coding
description:
  N-acetyl-gamma-glutamyl-phosphate reductase, common form; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.


ensembl_gene_id: Theco_0181
symbol: argJ
gene_biotype: protein_coding
description:
  Glutamate N-acetyltransferase/amino-acid acetyltransferase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.


ensembl_gene_id: Theco_0182
symbol: argB
gene_biotype: protein_coding
description:
  Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.


ensembl_gene_id: Theco_0183
symbol: argD
gene_biotype: protein_coding
description:
  PFAM: Aminotransferase class-III; TIGRFAM: acetylornithine and succinylornithine aminotransferases; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.


ensembl_gene_id: Theco_0184
symbol: AGA56431.1
gene_biotype: protein_coding
description:
  Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.


ensembl_gene_id: Theco_0185
symbol: argG
gene_biotype: protein_coding
description:
  PFAM: Arginosuccinate synthase; TIGRFAM: argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.


ensembl_gene_id: Theco_0188
symbol: ftsE
gene_biotype: protein_coding
description:
  Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.


ensembl_gene_id: Theco_0189
symbol: AGA56436.1
gene_biotype: protein_coding
description:
  Cell division protein; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.


ensembl_gene_id: Theco_0191
symbol: AGA56438.1
gene_biotype: protein_coding
description:
  C-terminal processing peptidase; PFAM: Putative peptidoglycan binding domain; Peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc); Belongs to the peptidase S41A family.


ensembl_gene_id: Theco_0195
symbol: uvrB
gene_biotype: protein_coding
description:
  Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]


ensembl_gene_id: Theco_0203
symbol: uvrA
gene_biotype: protein_coding
description:
  Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.


ensembl_gene_id: Theco_0209
symbol: AGA56455.1
gene_biotype: protein_coding
description:
  Sugar phosphate isomerase/epimerase; PFAM: AP endonuclease family 2 C terminus; Xylose isomerase-like TIM barrel.


ensembl_gene_id: Theco_0211
symbol: AGA56457.1
gene_biotype: protein_coding
description:
  DNA-binding transcriptional activator of the SARP family; PFAM: Bacterial transcriptional activator domain.


ensembl_gene_id: Theco_0213
symbol: AGA56459.1
gene_biotype: protein_coding
description:
  PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.


ensembl_gene_id: Theco_0214
symbol: pcrB
gene_biotype: protein_coding
description:
  Geranylgeranylglyceryl phosphate synthase family protein; Prenyltransferase that catalyzes in vivo the transfer of the heptaprenyl moiety of heptaprenyl pyrophosphate (HepPP; 35 carbon atoms) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P), producing heptaprenylglyceryl phosphate (HepGP). This reaction is an ether-bond- formation step in the biosynthesis of archaea-type G1P-based membrane lipids found in Bacillales.


ensembl_gene_id: Theco_0216
symbol: ligA
gene_biotype: protein_coding
description:
  DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.


ensembl_gene_id: Theco_0223
symbol: AGA56469.1
gene_biotype: protein_coding
description:
  PFAM: Firmicute transcriptional repressor of class III stress genes (CtsR); Belongs to the CtsR family.


ensembl_gene_id: Theco_0226
symbol: AGA56472.1
gene_biotype: protein_coding
description:
  ATPase with chaperone activity, ATP-binding subunit; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA); UvrB/uvrC motif; Belongs to the ClpA/ClpB family.


ensembl_gene_id: Theco_0234
symbol: AGA56479.1
gene_biotype: protein_coding
description:
  Glycosyl transferase, UDP-glucuronosyltransferase; PFAM: Glycosyltransferase family 28 C-terminal domain.


ensembl_gene_id: Theco_0237
symbol: AGA56482.1
gene_biotype: protein_coding
description:
  Beta-propeller domain-containing protein, methanol dehydrogenase; PFAM: Domain of unknown function (DUF477).


ensembl_gene_id: Theco_0241
symbol: radA
gene_biotype: protein_coding
description:
  DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.


ensembl_gene_id: Theco_0242
symbol: AGA56487.1
gene_biotype: protein_coding
description:
  Putative nucleic-acid-binding protein (contains the HHH domain); PFAM: DisA bacterial checkpoint controller nucleotide-binding; DisA bacterial checkpoint controller linker region; Belongs to the DisA family.


ensembl_gene_id: Theco_0243
symbol: AGA56488.1
gene_biotype: protein_coding
description:
  PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: Theco_0247
symbol: ispDF
gene_biotype: protein_coding
description:
  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D- erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C- methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF).


ensembl_gene_id: Theco_0248
symbol: gltX
gene_biotype: protein_coding
description:
  glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).


ensembl_gene_id: Theco_0249
symbol: AGA56494.1
gene_biotype: protein_coding
description:
  Serine O-acetyltransferase; PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: serine O-acetyltransferase.


ensembl_gene_id: Theco_0250
symbol: cysS
gene_biotype: protein_coding
description:
  PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; TIGRFAM: cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: Theco_0251
symbol: mrnC
gene_biotype: protein_coding
description:
  Hypothetical protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family.


ensembl_gene_id: Theco_0252
symbol: AGA56497.1
gene_biotype: protein_coding
description:
  rRNA methylase, putative, group 3; PFAM: SpoU rRNA Methylase family; RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA methylase, putative, group 3; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: Theco_0255
symbol: AGA56500.1
gene_biotype: protein_coding
description:
  ABC-type multidrug transport system, permease component; PFAM: ABC-2 type transporter; TIGRFAM: ABC transporter efflux protein, DrrB family.


ensembl_gene_id: Theco_0257
symbol: AGA56502.1
gene_biotype: protein_coding
description:
  RNA polymerase sigma-H factor; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-H factor.


ensembl_gene_id: Theco_0262
symbol: rpmG
gene_biotype: protein_coding
description:
  PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type; Belongs to the bacterial ribosomal protein bL33 family.


ensembl_gene_id: Theco_0263
symbol: secE
gene_biotype: protein_coding
description:
  Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.


ensembl_gene_id: Theco_0264
symbol: nusG
gene_biotype: protein_coding
description:
  Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination.


ensembl_gene_id: Theco_0265
symbol: rplK
gene_biotype: protein_coding
description:
  50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.


ensembl_gene_id: Theco_0266
symbol: rplA
gene_biotype: protein_coding
description:
  Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.


ensembl_gene_id: Theco_0268
symbol: rplJ
gene_biotype: protein_coding
description:
  Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.


ensembl_gene_id: Theco_0269
symbol: rplL
gene_biotype: protein_coding
description:
  Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.


ensembl_gene_id: Theco_0271
symbol: rpoB
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: Theco_0272
symbol: rpoC
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta'' subunit, predominant form; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: Theco_0274
symbol: rpsL
gene_biotype: protein_coding
description:
  Ribosomal protein S12, bacterial/organelle; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.


ensembl_gene_id: Theco_0275
symbol: rpsG
gene_biotype: protein_coding
description:
  Ribosomal protein S7, bacterial/organelle; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.


ensembl_gene_id: Theco_0276
symbol: fusA
gene_biotype: protein_coding
description:
  Translation elongation factor EF-G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF- [...]


ensembl_gene_id: Theco_0277
symbol: tuf
gene_biotype: protein_coding
description:
  Translation elongation factor TU; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.


ensembl_gene_id: Theco_0280
symbol: rpsJ
gene_biotype: protein_coding
description:
  Ribosomal protein S10, bacterial/organelle; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.


ensembl_gene_id: Theco_0281
symbol: rplC
gene_biotype: protein_coding
description:
  50S ribosomal protein L3, bacterial; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.


ensembl_gene_id: Theco_0283
symbol: rplW
gene_biotype: protein_coding
description:
  Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.


ensembl_gene_id: Theco_0284
symbol: rplB
gene_biotype: protein_coding
description:
  Ribosomal protein L2, bacterial/organellar; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.


ensembl_gene_id: Theco_0285
symbol: rpsS
gene_biotype: protein_coding
description:
  Ribosomal protein S19, bacterial/organelle; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.


ensembl_gene_id: Theco_0286
symbol: rplV
gene_biotype: protein_coding
description:
  Ribosomal protein L22, bacterial type; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.


ensembl_gene_id: Theco_0287
symbol: rpsC
gene_biotype: protein_coding
description:
  Ribosomal protein S3, bacterial type; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.


ensembl_gene_id: Theco_0288
symbol: rplP
gene_biotype: protein_coding
description:
  Ribosomal protein L16, bacterial/organelle; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.


ensembl_gene_id: Theco_0289
symbol: rpmC
gene_biotype: protein_coding
description:
  PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.


ensembl_gene_id: Theco_0290
symbol: rpsQ
gene_biotype: protein_coding
description:
  30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.


ensembl_gene_id: Theco_0291
symbol: rplN
gene_biotype: protein_coding
description:
  Ribosomal protein L14, bacterial/organelle; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.


ensembl_gene_id: Theco_0292
symbol: rplX
gene_biotype: protein_coding
description:
  Ribosomal protein L24, bacterial/organelle; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.


ensembl_gene_id: Theco_0293
symbol: rplE
gene_biotype: protein_coding
description:
  Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.


ensembl_gene_id: Theco_0294
symbol: rpsZ
gene_biotype: protein_coding
description:
  Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.


ensembl_gene_id: Theco_0295
symbol: rpsH
gene_biotype: protein_coding
description:
  Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.


ensembl_gene_id: Theco_0296
symbol: rplF
gene_biotype: protein_coding
description:
  Ribosomal protein L6, bacterial type; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.


ensembl_gene_id: Theco_0297
symbol: rplR
gene_biotype: protein_coding
description:
  Ribosomal protein L18, bacterial type; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.


ensembl_gene_id: Theco_0298
symbol: rpsE
gene_biotype: protein_coding
description:
  Ribosomal protein S5, bacterial/organelle type; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.


ensembl_gene_id: Theco_0300
symbol: rplO
gene_biotype: protein_coding
description:
  Ribosomal protein L15, bacterial/organelle; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.


ensembl_gene_id: Theco_0301
symbol: secY
gene_biotype: protein_coding
description:
  Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.


ensembl_gene_id: Theco_0302
symbol: adk
gene_biotype: protein_coding
description:
  Adenylate kinase family protein; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.


ensembl_gene_id: Theco_0303
symbol: map
gene_biotype: protein_coding
description:
  Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.


ensembl_gene_id: Theco_0305
symbol: infA
gene_biotype: protein_coding
description:
  Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.


ensembl_gene_id: Theco_0306
symbol: rpmJ
gene_biotype: protein_coding
description:
  PFAM: Ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type; Belongs to the bacterial ribosomal protein bL36 family.


ensembl_gene_id: Theco_0307
symbol: rpsM
gene_biotype: protein_coding
description:
  30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.


ensembl_gene_id: Theco_0308
symbol: rpsK
gene_biotype: protein_coding
description:
  30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.


ensembl_gene_id: Theco_0309
symbol: rpoA
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: Theco_0311
symbol: truA
gene_biotype: protein_coding
description:
  Pseudouridylate synthase I; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.


ensembl_gene_id: Theco_0312
symbol: rplM
gene_biotype: protein_coding
description:
  Ribosomal protein L13, bacterial type; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.


ensembl_gene_id: Theco_0314
symbol: cysH
gene_biotype: protein_coding
description:
  Thioredoxin-dependent phosophoadenylyl-sulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.


ensembl_gene_id: Theco_0315
symbol: sat
gene_biotype: protein_coding
description:
  PFAM: ATP-sulfurylase; TIGRFAM: ATP sulphurylase; Belongs to the sulfate adenylyltransferase family.


ensembl_gene_id: Theco_0317
symbol: AGA56560.1
gene_biotype: protein_coding
description:
  ATPase involved in chromosome partitioning; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.


ensembl_gene_id: Theco_0320
symbol: AGA56563.1
gene_biotype: protein_coding
description:
  PFAM: Polysaccharide deacetylase; TIGRFAM: polysaccharide deacetylase family sporulation protein PdaB.


ensembl_gene_id: Theco_0339
symbol: ppc
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family.


ensembl_gene_id: Theco_0340
symbol: AGA56568.1
gene_biotype: protein_coding
description:
  PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-W factor; RNA polymerase sigma-70 factor, Bacteroides expansion family 1; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Theco_0342
symbol: dacA
gene_biotype: protein_coding
description:
  TIGR00159 family protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.


ensembl_gene_id: Theco_0344
symbol: glmM
gene_biotype: protein_coding
description:
  Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.


ensembl_gene_id: Theco_0345
symbol: glmS
gene_biotype: protein_coding
description:
  Glucosamine--fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.


ensembl_gene_id: Theco_0362
symbol: AGA56587.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Theco_0364
symbol: AGA56589.1
gene_biotype: protein_coding
description:
  TIGR00730 family protein; PFAM: Possible lysine decarboxylase; TIGRFAM: TIGR00725 family protein; TIGR00730 family protein; Belongs to the LOG family.


ensembl_gene_id: Theco_0374
symbol: AGA56599.1
gene_biotype: protein_coding
description:
  Putative signal transduction protein with a C-terminal ATPase domain; PFAM: Histidine kinase; HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.


ensembl_gene_id: Theco_0382
symbol: AGA56606.1
gene_biotype: protein_coding
description:
  PP-loop superfamily ATP-utilizing enzyme; PFAM: ATP-binding region; TIGRFAM: MJ0570-related uncharacterized domain.


ensembl_gene_id: Theco_0386
symbol: tal
gene_biotype: protein_coding
description:
  Fructose-6-phosphate aldolase, TalC/MipB family; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.


ensembl_gene_id: Theco_0387
symbol: AGA56610.1
gene_biotype: protein_coding
description:
  Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.


ensembl_gene_id: Theco_0388
symbol: zwf
gene_biotype: protein_coding
description:
  Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.


ensembl_gene_id: Theco_0395
symbol: AGA56616.1
gene_biotype: protein_coding
description:
  Germination protein, Ger(X)C family; PFAM: Spore germination B3/ GerAC like, C-terminal; TIGRFAM: germination protein, Ger(x)C family.


ensembl_gene_id: Theco_0401
symbol: AGA56622.1
gene_biotype: protein_coding
description:
  Glycerol-3-phosphate responsive antiterminator (mRNA-binding); Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA.


ensembl_gene_id: Theco_0402
symbol: AGA56623.1
gene_biotype: protein_coding
description:
  Glycerol-3-phosphate dehydrogenase; PFAM: FAD dependent oxidoreductase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: Theco_0406
symbol: AGA56627.1
gene_biotype: protein_coding
description:
  ABC-type sugar transport system, periplasmic component; PFAM: Domain of unknown function (DUF3502); Bacterial extracellular solute-binding protein.


ensembl_gene_id: Theco_0407
symbol: AGA56628.1
gene_biotype: protein_coding
description:
  ABC-type polysaccharide transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.


ensembl_gene_id: Theco_0409
symbol: AGA56630.1
gene_biotype: protein_coding
description:
  PFAM: Glycosyl hydrolase family 3 C terminal domain; Glycosyl hydrolase family 3 N terminal domain; Belongs to the glycosyl hydrolase 3 family.


ensembl_gene_id: Theco_0411
symbol: AGA56632.1
gene_biotype: protein_coding
description:
  Putative acyl-CoA transferase/carnitine dehydratase; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.


ensembl_gene_id: Theco_0413
symbol: AGA56634.1
gene_biotype: protein_coding
description:
  Putative hydrolase, CocE/NonD family; PFAM: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; X-Pro dipeptidyl-peptidase (S15 family); TIGRFAM: putative hydrolase, CocE/NonD family.


ensembl_gene_id: Theco_0414
symbol: AGA56635.1
gene_biotype: protein_coding
description:
  acetyl-CoA acetyltransferase; PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Theco_0417
symbol: AGA56638.1
gene_biotype: protein_coding
description:
  ABC-type dipeptide transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle.


ensembl_gene_id: Theco_0427
symbol: AGA56648.1
gene_biotype: protein_coding
description:
  PFAM: Dehydratase family; TIGRFAM: putative dehydratase, YjhG/YagF family; Belongs to the IlvD/Edd family.


ensembl_gene_id: Theco_0442
symbol: AGA56662.1
gene_biotype: protein_coding
description:
  ATPase component of various ABC-type transport systems with duplicated ATPase domain; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Theco_0444
symbol: AGA56664.1
gene_biotype: protein_coding
description:
  PFAM: ABC transporter; TIGRFAM: gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit.


ensembl_gene_id: Theco_0448
symbol: AGA56668.1
gene_biotype: protein_coding
description:
  PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.


ensembl_gene_id: Theco_0450
symbol: AGA56670.1
gene_biotype: protein_coding
description:
  Beta-galactosidase/beta-glucuronidase; PFAM: domain; Glycosyl hydrolases family 2, sugar binding domain; Belongs to the glycosyl hydrolase 2 family.


ensembl_gene_id: Theco_0461
symbol: AGA56678.1
gene_biotype: protein_coding
description:
  PFAM: Beta-galactosidase trimerisation domain; Beta-galactosidase C-terminal domain; Beta-galactosidase.


ensembl_gene_id: Theco_0467
symbol: sfsA
gene_biotype: protein_coding
description:
  PFAM: Sugar fermentation stimulation protein; TIGRFAM: sugar fermentation stimulation protein; Belongs to the SfsA family.


ensembl_gene_id: Theco_0473
symbol: AGA56689.1
gene_biotype: protein_coding
description:
  PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; manually curated.


ensembl_gene_id: Theco_0474
symbol: AGA56690.1
gene_biotype: protein_coding
description:
  Alkylhydroperoxidase AhpD family core domain protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.


ensembl_gene_id: Theco_0475
symbol: azoR
gene_biotype: protein_coding
description:
  Acyl carrier protein phosphodiesterase; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family.


ensembl_gene_id: Theco_0477
symbol: AGA56693.1
gene_biotype: protein_coding
description:
  Putative dithiol-disulfide isomerase involved in polyketide biosynthesis; PFAM: DSBA-like thioredoxin domain.


ensembl_gene_id: Theco_0479
symbol: AGA56695.1
gene_biotype: protein_coding
description:
  Post-translational modification of quorum-sensing peptide protein; PFAM: Accessory gene regulator B.


ensembl_gene_id: Theco_0489
symbol: AGA56704.1
gene_biotype: protein_coding
description:
  PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); Group II intron, maturase-specific domain; manually curated.


ensembl_gene_id: Theco_0494
symbol: AGA56707.1
gene_biotype: protein_coding
description:
  Cell wall-associated hydrolase, invasion-associated protein; PFAM: NlpC/P60 family; Bacterial SH3 domain.


ensembl_gene_id: Theco_0495
symbol: AGA56708.1
gene_biotype: protein_coding
description:
  OAH/OAS sulfhydrylase; PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: OAH/OAS sulfhydrylase.


ensembl_gene_id: Theco_0504
symbol: clpP
gene_biotype: protein_coding
description:
  Protease subunit of ATP-dependent protease; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.


ensembl_gene_id: Theco_0512
symbol: AGA56724.1
gene_biotype: protein_coding
description:
  Putative dehydrogenase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain.


ensembl_gene_id: Theco_0517
symbol: AGA56729.1
gene_biotype: protein_coding
description:
  Transcriptional regulator of sugar metabolism; PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain.


ensembl_gene_id: Theco_0518
symbol: kduI
gene_biotype: protein_coding
description:
  5-keto 4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.


ensembl_gene_id: Theco_0520
symbol: glpK
gene_biotype: protein_coding
description:
  Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.


ensembl_gene_id: Theco_0524
symbol: selO
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family.


ensembl_gene_id: Theco_0536
symbol: ilvA
gene_biotype: protein_coding
description:
  Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.


ensembl_gene_id: Theco_0544
symbol: AGA56754.1
gene_biotype: protein_coding
description:
  Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).


ensembl_gene_id: Theco_0545
symbol: AGA56755.1
gene_biotype: protein_coding
description:
  Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.


ensembl_gene_id: Theco_0547
symbol: AGA56757.1
gene_biotype: protein_coding
description:
  Heme/copper-type cytochrome/quinol oxidase, subunit 4; PFAM: Prokaryotic Cytochrome C oxidase subunit IV.


ensembl_gene_id: Theco_0548
symbol: AGA56758.1
gene_biotype: protein_coding
description:
  PFAM: Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG); TIGRFAM: cytochrome c oxidase assembly factor CtaG.


ensembl_gene_id: Theco_0557
symbol: AGA56767.1
gene_biotype: protein_coding
description:
  Beta-galactosidase/beta-glucuronidase; PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain.


ensembl_gene_id: Theco_0562
symbol: AGA56772.1
gene_biotype: protein_coding
description:
  5,10-methenyltetrahydrofolate synthetase; PFAM: 5-formyltetrahydrofolate cyclo-ligase family; TIGRFAM: 5,10-methenyltetrahydrofolate synthetase.


ensembl_gene_id: Theco_0563
symbol: moaC
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein MoaC; Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC family.


ensembl_gene_id: Theco_0565
symbol: AGA56775.1
gene_biotype: protein_coding
description:
  Molybdopterin biosynthesis enzyme; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.


ensembl_gene_id: Theco_0566
symbol: tatA
gene_biotype: protein_coding
description:
  Twin arginine-targeting protein translocase, TatA/E family; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.


ensembl_gene_id: Theco_0567
symbol: tatC
gene_biotype: protein_coding
description:
  Twin arginine targeting protein translocase subunit TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes.


ensembl_gene_id: Theco_0568
symbol: groS
gene_biotype: protein_coding
description:
  Co-chaperonin GroES; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.


ensembl_gene_id: Theco_0569
symbol: groL
gene_biotype: protein_coding
description:
  Chaperonin GroL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.


ensembl_gene_id: Theco_0570
symbol: acpS
gene_biotype: protein_coding
description:
  Holo-(acyl-carrier-protein) synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.


ensembl_gene_id: Theco_0571
symbol: AGA56781.1
gene_biotype: protein_coding
description:
  Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain; PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family.


ensembl_gene_id: Theco_0573
symbol: nadK
gene_biotype: protein_coding
description:
  Putative sugar kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.


ensembl_gene_id: Theco_0579
symbol: AGA56789.1
gene_biotype: protein_coding
description:
  Oligoendopeptidase, pepF/M3 family; PFAM: Oligopeptidase F; Peptidase family M3; TIGRFAM: oligoendopeptidase, pepF/M3 family.


ensembl_gene_id: Theco_0583
symbol: AGA56793.1
gene_biotype: protein_coding
description:
  Putative signal-transduction protein containing cAMP-binding and CBS domains; PFAM: HTH domain; CBS domain.


ensembl_gene_id: Theco_0584
symbol: AGA56794.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Bifunctional serine/threonine kinase and phosphorylase involved in the regulation of the pyruvate, phosphate dikinase (PPDK) by catalyzing its phosphorylation/dephosphorylation.


ensembl_gene_id: Theco_0585
symbol: AGA56795.1
gene_biotype: protein_coding
description:
  Fructose-1,6-bisphosphatase, class II; PFAM: Bacterial fructose-1,6-bisphosphatase, glpX-encoded; TIGRFAM: fructose-1,6-bisphosphatase, class II.


ensembl_gene_id: Theco_0586
symbol: ndk
gene_biotype: protein_coding
description:
  Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.


ensembl_gene_id: Theco_0593
symbol: AGA56803.1
gene_biotype: protein_coding
description:
  Beta-fructosidase, levanase/invertase; PFAM: Glycosyl hydrolases family 32 N-terminal domain; Belongs to the glycosyl hydrolase 32 family.


ensembl_gene_id: Theco_0596
symbol: AGA56806.1
gene_biotype: protein_coding
description:
  TIGR02453 family protein; PFAM: Conserved hypothetical protein (DUF2461); TIGRFAM: TIGR02453 family protein.


ensembl_gene_id: Theco_0609
symbol: AGA56819.1
gene_biotype: protein_coding
description:
  TIGR01777 family protein; PFAM: NAD dependent epimerase/dehydratase family; Domain of unknown function (DUF1731); TIGRFAM: TIGR01777 family protein.


ensembl_gene_id: Theco_0611
symbol: nfo
gene_biotype: protein_coding
description:
  Apurinic endonuclease APN1; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.


ensembl_gene_id: Theco_0612
symbol: purU
gene_biotype: protein_coding
description:
  Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).


ensembl_gene_id: Theco_0616
symbol: AGA56826.1
gene_biotype: protein_coding
description:
  PFAM: Uncharacterized protein family UPF0029; Domain of unknown function (DUF1949); TIGRFAM: uncharacterized protein, YigZ family.


ensembl_gene_id: Theco_0618
symbol: AGA56828.1
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase; PFAM: Glycosyl transferase family 4.


ensembl_gene_id: Theco_0620
symbol: AGA56830.1
gene_biotype: protein_coding
description:
  PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; HAD-superfamily hydrolase, subfamily IIB.


ensembl_gene_id: Theco_0630
symbol: AGA56840.1
gene_biotype: protein_coding
description:
  DNA-binding domain-containing protein, AraC-type; PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family.


ensembl_gene_id: Theco_0632
symbol: AGA56842.1
gene_biotype: protein_coding
description:
  Altronate dehydratase; PFAM: SAF domain; D-galactarate dehydratase / Altronate hydrolase, C terminus.


ensembl_gene_id: Theco_0642
symbol: AGA56851.1
gene_biotype: protein_coding
description:
  Putative methylated DNA-protein cysteine methyltransferase; PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain.


ensembl_gene_id: Theco_0650
symbol: AGA56859.1
gene_biotype: protein_coding
description:
  PFAM: Molybdopterin guanine dinucleotide synthesis protein B; TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein MobB.


ensembl_gene_id: Theco_0664
symbol: prfC
gene_biotype: protein_coding
description:
  Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.


ensembl_gene_id: Theco_0668
symbol: AGA56877.1
gene_biotype: protein_coding
description:
  Phosphate transport regulator related to PhoU; PFAM: Protein of unknown function DUF47; TIGRFAM: TIGR00153 family protein.


ensembl_gene_id: Theco_0673
symbol: AGA56882.1
gene_biotype: protein_coding
description:
  Conserved protein of unknown function BmrU; PFAM: Diacylglycerol kinase catalytic domain; TIGRFAM: lipid kinase, YegS/Rv2252/BmrU family.


ensembl_gene_id: Theco_0674
symbol: AGA56883.1
gene_biotype: protein_coding
description:
  PFAM: TRAM domain; tRNA (Uracil-5-)-methyltransferase; TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.


ensembl_gene_id: Theco_0682
symbol: AGA56890.1
gene_biotype: protein_coding
description:
  Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase; PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain.


ensembl_gene_id: Theco_0691
symbol: AGA56898.1
gene_biotype: protein_coding
description:
  Putative peptidase; PFAM: Esterase PHB depolymerase; Domain of unknown function (DUF1083); Fibronectin type III domain.


ensembl_gene_id: Theco_0716
symbol: AGA56919.1
gene_biotype: protein_coding
description:
  Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains; PFAM: Response regulator receiver domain.


ensembl_gene_id: Theco_0724
symbol: AGA56926.1
gene_biotype: protein_coding
description:
  Arginase family hydrolase, arginase/agmainase/formiminoglutamate hydrolase; PFAM: Arginase family; Belongs to the arginase family.


ensembl_gene_id: Theco_0727
symbol: cobB
gene_biotype: protein_coding
description:
  NAD-dependent protein deacetylase, SIR2 family; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily.


ensembl_gene_id: Theco_0728
symbol: AGA56930.1
gene_biotype: protein_coding
description:
  Molybdate ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: Theco_0729
symbol: AGA56931.1
gene_biotype: protein_coding
description:
  Molybdenum cofactor synthesis domain protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.


ensembl_gene_id: Theco_0730
symbol: mobA
gene_biotype: protein_coding
description:
  Molybdopterin-guanine dinucleotide biosynthesis protein A; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor.


ensembl_gene_id: Theco_0744
symbol: AGA56945.1
gene_biotype: protein_coding
description:
  PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Theco_0749
symbol: AGA56950.1
gene_biotype: protein_coding
description:
  Putative peptidase; PFAM: Phospholipase/Carboxylesterase; S-layer homology domain; Bacterial Ig-like domain (group 4).


ensembl_gene_id: Theco_0751
symbol: AGA56952.1
gene_biotype: protein_coding
description:
  ABC-type enterochelin transport system, permease component; PFAM: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: Theco_0788
symbol: AGA56988.1
gene_biotype: protein_coding
description:
  Putative esterase of the alpha-beta hydrolase superfamily; PFAM: Copper amine oxidase N-terminal domain.


ensembl_gene_id: Theco_0790
symbol: AGA56990.1
gene_biotype: protein_coding
description:
  Putative branched-chain amino acid permease (azaleucine resistance); PFAM: AzlC protein; TIGRFAM: 4-azaleucine resistance probable transporter AzlC.


ensembl_gene_id: Theco_0794
symbol: AGA56993.1
gene_biotype: protein_coding
description:
  Putative hydrolase or acyltransferase of alpha/beta superfamily; PFAM: alpha/beta hydrolase fold; manually curated.


ensembl_gene_id: Theco_0798
symbol: AGA56997.1
gene_biotype: protein_coding
description:
  ABC-type metal ion transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.


ensembl_gene_id: Theco_0799
symbol: metN
gene_biotype: protein_coding
description:
  ABC-type metal ion transport system, ATPase component; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.


ensembl_gene_id: Theco_0804
symbol: AGA57003.1
gene_biotype: protein_coding
description:
  PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.


ensembl_gene_id: Theco_0808
symbol: AGA57007.1
gene_biotype: protein_coding
description:
  DNA mismatch endonuclease Vsr; May nick specific sequences that contain T:G mispairs resulting from m5C-deamination.


ensembl_gene_id: Theco_0809
symbol: AGA57008.1
gene_biotype: protein_coding
description:
  DNA-methyltransferase Dcm; PFAM: C-5 cytosine-specific DNA methylase; Helix-turn-helix; TIGRFAM: DNA-methyltransferase (dcm).


ensembl_gene_id: Theco_0817
symbol: nnrE
gene_biotype: protein_coding
description:
  yjeF-like protein, hydroxyethylthiazole kinase-related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.  Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate d [...]


ensembl_gene_id: Theco_0824
symbol: AGA57023.1
gene_biotype: protein_coding
description:
  Secreted protein with C-terminal beta-propeller domain; PFAM: Copper amine oxidase N-terminal domain; Beta propeller domain.


ensembl_gene_id: Theco_0827
symbol: AGA57026.1
gene_biotype: protein_coding
description:
  Integral membrane protein CcmA involved in cell shape determination; PFAM: Protein of unknown function, DUF583.


ensembl_gene_id: Theco_0836
symbol: trpS
gene_biotype: protein_coding
description:
  tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: Theco_0842
symbol: ctaB
gene_biotype: protein_coding
description:
  Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group; Belongs to the UbiA prenyltransferase family. Protoheme IX farnesyltransferase subfamily.


ensembl_gene_id: Theco_0843
symbol: AGA57042.1
gene_biotype: protein_coding
description:
  Uncharacterized protein SCO1/SenC/PrrC; PFAM: SCO1/SenC; involved in biogenesis of respiratory and photosynthetic systems.


ensembl_gene_id: Theco_0852
symbol: AGA57048.1
gene_biotype: protein_coding
description:
  Cell division protein FtsI/penicillin-binding protein 2; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain.


ensembl_gene_id: Theco_0854
symbol: AGA57050.1
gene_biotype: protein_coding
description:
  Putative signal transduction protein with a C-terminal ATPase domain; PFAM: Histidine kinase; HAMP domain; Cache domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.


ensembl_gene_id: Theco_0856
symbol: AGA57052.1
gene_biotype: protein_coding
description:
  ABC-type xylose transport system, periplasmic component; TIGRFAM: D-xylose ABC transporter, substrate-binding protein.


ensembl_gene_id: Theco_0858
symbol: AGA57054.1
gene_biotype: protein_coding
description:
  PFAM: Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Theco_0862
symbol: AGA57058.1
gene_biotype: protein_coding
description:
  Membrane protein involved in the export of O-antigen and teichoic acid; PFAM: Polysaccharide biosynthesis protein.


ensembl_gene_id: Theco_0872
symbol: mqnE
gene_biotype: protein_coding
description:
  Putative menaquinone biosynthesis protein, SCO4494 family; Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3-[(1-carboxyvinyl)oxy]benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate.


ensembl_gene_id: Theco_0873
symbol: AGA57069.1
gene_biotype: protein_coding
description:
  PFAM: Iron-sulphur cluster biosynthesis; TIGRFAM: Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.


ensembl_gene_id: Theco_0893
symbol: AGA57086.1
gene_biotype: protein_coding
description:
  Cysteine export CydDC family ABC transporter permease subunit/ATP-binding protein CydC; PFAM: ABC transporter; TIGRFAM: thiol reductant ABC exporter, CydC subunit.


ensembl_gene_id: Theco_0894
symbol: AGA57087.1
gene_biotype: protein_coding
description:
  ATPase and permease component of ABC-type transporter involved in cytochrome bd biosynthesis; PFAM: ABC transporter transmembrane region; ABC transporter.


ensembl_gene_id: Theco_0901
symbol: AGA57094.1
gene_biotype: protein_coding
description:
  ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.


ensembl_gene_id: Theco_0925
symbol: AGA57116.1
gene_biotype: protein_coding
description:
  Beta-galactosidase/beta-glucuronidase; PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain; Belongs to the glycosyl hydrolase 2 family.


ensembl_gene_id: Theco_0927
symbol: AGA57118.1
gene_biotype: protein_coding
description:
  Type II secretory pathway, component ExeA (predicted ATPase); PFAM: Uncharacterized conserved protein (DUF2075).


ensembl_gene_id: Theco_0936
symbol: AGA57124.1
gene_biotype: protein_coding
description:
  Trypsin-like serine protease with C-terminal PDZ domain; PFAM: Trypsin; Copper amine oxidase N-terminal domain.


ensembl_gene_id: Theco_0940
symbol: AGA57127.1
gene_biotype: protein_coding
description:
  Cellobiose phosphorylase; PFAM: Glycosyltransferase family 36; Uncharacterized protein conserved in bacteria (DUF2329); Putative carbohydrate binding domain; Glycosyltransferase 36 associated family.


ensembl_gene_id: Theco_0942
symbol: AGA57129.1
gene_biotype: protein_coding
description:
  Phosphoglycerate dehydrogenase-like oxidoreductase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain.


ensembl_gene_id: Theco_0945
symbol: AGA57132.1
gene_biotype: protein_coding
description:
  Short-chain dehydrogenase of unknown substrate specificity; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Theco_0952
symbol: bioB
gene_biotype: protein_coding
description:
  Biotin synthetase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.


ensembl_gene_id: Theco_0954
symbol: AGA57140.1
gene_biotype: protein_coding
description:
  PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.


ensembl_gene_id: Theco_0956
symbol: galK
gene_biotype: protein_coding
description:
  Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.


ensembl_gene_id: Theco_0957
symbol: AGA57143.1
gene_biotype: protein_coding
description:
  UDP-glucose-4-epimerase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: UDP-glucose-4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.


ensembl_gene_id: Theco_0958
symbol: galT
gene_biotype: protein_coding
description:
  PFAM: Galactose-1-phosphate uridyl transferase, C-terminal domain; Galactose-1-phosphate uridyl transferase, N-terminal domain; TIGRFAM: galactose-1-phosphate uridylyltransferase, family 2.


ensembl_gene_id: Theco_0988
symbol: AGA57169.1
gene_biotype: protein_coding
description:
  L-ribulose-5-phosphate 4-epimerase; PFAM: Class II Aldolase and Adducin N-terminal domain; TIGRFAM: L-ribulose-5-phosphate 4-epimerase.


ensembl_gene_id: Theco_0989
symbol: araB
gene_biotype: protein_coding
description:
  L-ribulokinase; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: L-ribulokinase.


ensembl_gene_id: Theco_0994
symbol: AGA57175.1
gene_biotype: protein_coding
description:
  HAMP domain-containing protein,histidine kinase,cache domain-containing protein; PFAM: Histidine kinase; Cache domain; HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.


ensembl_gene_id: Theco_0999
symbol: AGA57180.1
gene_biotype: protein_coding
description:
  N-acyl-D-glucosamine 2-epimerase; Catalyzes the reversible epimerization of cellobiose to 4-O- beta-D-glucopyranosyl-D-mannose (Glc-Man).


ensembl_gene_id: Theco_1001
symbol: msrA
gene_biotype: protein_coding
description:
  methionine-R-sulfoxide reductase/methionine-S-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.


ensembl_gene_id: Theco_1002
symbol: AGA57183.1
gene_biotype: protein_coding
description:
  PFAM: Phosphomannose isomerase type I; TIGRFAM: mannose-6-phosphate isomerase, class I; Belongs to the mannose-6-phosphate isomerase type 1 family.


ensembl_gene_id: Theco_1003
symbol: AGA57184.1
gene_biotype: protein_coding
description:
  Putative S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; PFAM: Putative rRNA methylase.


ensembl_gene_id: Theco_1006
symbol: trmB
gene_biotype: protein_coding
description:
  tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.


ensembl_gene_id: Theco_1011
symbol: infC
gene_biotype: protein_coding
description:
  Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.


ensembl_gene_id: Theco_1012
symbol: rpmI
gene_biotype: protein_coding
description:
  PFAM: Ribosomal protein L35; TIGRFAM: ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.


ensembl_gene_id: Theco_1013
symbol: rplT
gene_biotype: protein_coding
description:
  Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.


ensembl_gene_id: Theco_1015
symbol: AGA57194.1
gene_biotype: protein_coding
description:
  Acetolactate synthase, large subunit, biosynthetic type; PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type.


ensembl_gene_id: Theco_1016
symbol: AGA57195.1
gene_biotype: protein_coding
description:
  PFAM: Small subunit of acetolactate synthase; ACT domain; TIGRFAM: acetolactate synthase, small subunit.


ensembl_gene_id: Theco_1017
symbol: ilvC
gene_biotype: protein_coding
description:
  Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.


ensembl_gene_id: Theco_1018
symbol: leuA
gene_biotype: protein_coding
description:
  2-isopropylmalate synthase, bacterial type; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily.


ensembl_gene_id: Theco_1019
symbol: leuB
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.


ensembl_gene_id: Theco_1022
symbol: sigI
gene_biotype: protein_coding
description:
  RNA polymerase sigma-I factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; Belongs to the sigma-70 factor family. SigI subfamily.


ensembl_gene_id: Theco_1024
symbol: AGA57203.1
gene_biotype: protein_coding
description:
  PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Phosphoserine phosphatase RsbU, N-terminal domain; TIGRFAM: PAS domain S-box.


ensembl_gene_id: Theco_1025
symbol: pepA
gene_biotype: protein_coding
description:
  Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.


ensembl_gene_id: Theco_1027
symbol: AGA57206.1
gene_biotype: protein_coding
description:
  ABC-type multidrug transport system, ATPase and permease component; PFAM: ABC transporter transmembrane region; ABC transporter.


ensembl_gene_id: Theco_1046
symbol: pxpA
gene_biotype: protein_coding
description:
  Putative lactam utilization protein B-like protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.


ensembl_gene_id: Theco_1049
symbol: AGA57225.1
gene_biotype: protein_coding
description:
  Methionine synthase II (cobalamin-independent); Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.


ensembl_gene_id: Theco_1050
symbol: katG
gene_biotype: protein_coding
description:
  Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.


ensembl_gene_id: Theco_1052
symbol: AGA57228.1
gene_biotype: protein_coding
description:
  Putative transcriptional regulator; PFAM: MerR, DNA binding; MerR family regulatory protein; TipAS antibiotic-recognition domain.


ensembl_gene_id: Theco_1055
symbol: ung
gene_biotype: protein_coding
description:
  uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.


ensembl_gene_id: Theco_1058
symbol: AGA57233.1
gene_biotype: protein_coding
description:
  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.


ensembl_gene_id: Theco_1063
symbol: AGA57238.1
gene_biotype: protein_coding
description:
  ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component; PFAM: NMT1/THI5 like.


ensembl_gene_id: Theco_1068
symbol: AGA57243.1
gene_biotype: protein_coding
description:
  ABC-type sugar transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein; manually curated.


ensembl_gene_id: Theco_1074
symbol: AGA57249.1
gene_biotype: protein_coding
description:
  Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; PFAM: DJ-1/PfpI family.


ensembl_gene_id: Theco_1078
symbol: AGA57253.1
gene_biotype: protein_coding
description:
  ABC-type uncharacterized transport system, permease component; PFAM: Protein of unknown function (DUF990).


ensembl_gene_id: Theco_1088
symbol: AGA57262.1
gene_biotype: protein_coding
description:
  Dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Theco_1094
symbol: AGA57268.1
gene_biotype: protein_coding
description:
  Diaminopimelate dehydrogenase; Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate.


ensembl_gene_id: Theco_1095
symbol: AGA57269.1
gene_biotype: protein_coding
description:
  PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.


ensembl_gene_id: Theco_1102
symbol: pheS
gene_biotype: protein_coding
description:
  phenylalanyl-tRNA synthetase, alpha subunit; PFAM: tRNA synthetases class II core domain (F); Aminoacyl tRNA synthetase class II, N-terminal domain; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.


ensembl_gene_id: Theco_1103
symbol: pheT
gene_biotype: protein_coding
description:
  phenylalanyl-tRNA synthetase, beta subunit; PFAM: tRNA synthetase B5 domain; Ferredoxin-fold anticodon binding domain; B3/4 domain; Putative tRNA binding domain; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.


ensembl_gene_id: Theco_1104
symbol: AGA57277.1
gene_biotype: protein_coding
description:
  Cell division protein ZapA; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.


ensembl_gene_id: Theco_1105
symbol: AGA57278.1
gene_biotype: protein_coding
description:
  Heme/copper-type cytochrome/quinol oxidases, subunit 2; PFAM: Cytochrome C oxidase subunit II, periplasmic domain.


ensembl_gene_id: Theco_1107
symbol: mutS2
gene_biotype: protein_coding
description:
  MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.


ensembl_gene_id: Theco_1118
symbol: AGA57291.1
gene_biotype: protein_coding
description:
  PFAM: Cobalamin adenosyltransferase; TIGRFAM: ATP:cob(I)alamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.


ensembl_gene_id: Theco_1119
symbol: AGA57292.1
gene_biotype: protein_coding
description:
  Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: Theco_1126
symbol: AGA57299.1
gene_biotype: protein_coding
description:
  DNA/RNA helicase, superfamily II; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase.


ensembl_gene_id: Theco_1129
symbol: AGA57302.1
gene_biotype: protein_coding
description:
  Putative ABC-type exoprotein transport system, permease component; PFAM: Bacterial ABC transporter protein EcsB.


ensembl_gene_id: Theco_1134
symbol: AGA57307.1
gene_biotype: protein_coding
description:
  Transcriptional regulator with HTH domain and aminotransferase domain; PFAM: Aminotransferase class I and II; Bacterial regulatory proteins, gntR family.


ensembl_gene_id: Theco_1135
symbol: psd
gene_biotype: protein_coding
description:
  Phosphatidylserine decarboxylase precursor; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).


ensembl_gene_id: Theco_1137
symbol: thiC
gene_biotype: protein_coding
description:
  Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family.


ensembl_gene_id: Theco_1138
symbol: AGA57311.1
gene_biotype: protein_coding
description:
  Dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis; PFAM: MoeZ/MoeB domain; ThiF family.


ensembl_gene_id: Theco_1139
symbol: thiE
gene_biotype: protein_coding
description:
  Thiamine biosynthesis protein ThiS; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.


ensembl_gene_id: Theco_1140
symbol: thiG
gene_biotype: protein_coding
description:
  Putative enzyme of thiazole biosynthesis; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.


ensembl_gene_id: Theco_1149
symbol: AGA57321.1
gene_biotype: protein_coding
description:
  dTDP-glucose pyrophosphorylase; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylylransferase, long form; glucose-1-phosphate thymidylyltransferase, short form.


ensembl_gene_id: Theco_1159
symbol: AGA57331.1
gene_biotype: protein_coding
description:
  PFAM: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.


ensembl_gene_id: Theco_1161
symbol: AGA57333.1
gene_biotype: protein_coding
description:
  dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.


ensembl_gene_id: Theco_1166
symbol: fabH
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.


ensembl_gene_id: Theco_1172
symbol: AGA57343.1
gene_biotype: protein_coding
description:
  Beta-glucanase/beta-glucan synthetase; PFAM: Ricin-type beta-trefoil lectin domain; Glycosyl hydrolases family 16.


ensembl_gene_id: Theco_1174
symbol: AGA57345.1
gene_biotype: protein_coding
description:
  Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.


ensembl_gene_id: Theco_1175
symbol: AGA57346.1
gene_biotype: protein_coding
description:
  Alkyl hydroperoxide reductase, F subunit; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: alkyl hydroperoxide reductase, F subunit.


ensembl_gene_id: Theco_1176
symbol: AGA57347.1
gene_biotype: protein_coding
description:
  Archaeal ADP-dependent phosphofructokinase/glucokinase; PFAM: ADP-specific Phosphofructokinase/Glucokinase conserved region.


ensembl_gene_id: Theco_1192
symbol: AGA57362.1
gene_biotype: protein_coding
description:
  Zn-finger containing NTP pyrophosphohydrolase; PFAM: NUDIX domain; Belongs to the Nudix hydrolase family.


ensembl_gene_id: Theco_1196
symbol: AGA57366.1
gene_biotype: protein_coding
description:
  Heme/copper-type cytochrome/quinol oxidase, subunit 1; PFAM: Cytochrome C and Quinol oxidase polypeptide I; Belongs to the heme-copper respiratory oxidase family.


ensembl_gene_id: Theco_1210
symbol: AGA57376.1
gene_biotype: protein_coding
description:
  Iron-sulfur cluster repair di-iron protein; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family.


ensembl_gene_id: Theco_1219
symbol: AGA57385.1
gene_biotype: protein_coding
description:
  Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family.


ensembl_gene_id: Theco_1223
symbol: AGA57389.1
gene_biotype: protein_coding
description:
  PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain.


ensembl_gene_id: Theco_1235
symbol: AGA57401.1
gene_biotype: protein_coding
description:
  Dihydrodipicolinate synthase/N-acetylneuraminate lyase; PFAM: Dihydrodipicolinate synthetase family; Belongs to the DapA family.


ensembl_gene_id: Theco_1236
symbol: AGA57402.1
gene_biotype: protein_coding
description:
  PFAM: Serine dehydratase beta chain; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, beta subunit.


ensembl_gene_id: Theco_1237
symbol: AGA57403.1
gene_biotype: protein_coding
description:
  PFAM: Serine dehydratase alpha chain; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, single chain form; L-serine dehydratase, iron-sulfur-dependent, alpha subunit.


ensembl_gene_id: Theco_1238
symbol: AGA57404.1
gene_biotype: protein_coding
description:
  Amidohydrolase; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: amidohydrolase.


ensembl_gene_id: Theco_1240
symbol: AGA57406.1
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.


ensembl_gene_id: Theco_1242
symbol: nagB
gene_biotype: protein_coding
description:
  Glucosamine-6-phosphate isomerase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion.


ensembl_gene_id: Theco_1261
symbol: AGA57427.1
gene_biotype: protein_coding
description:
  Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: Class II Aldolase and Adducin N-terminal domain; short chain dehydrogenase; TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.


ensembl_gene_id: Theco_1263
symbol: rhaA
gene_biotype: protein_coding
description:
  PFAM: L-rhamnose isomerase (RhaA); TIGRFAM: L-rhamnose isomerase; Belongs to the rhamnose isomerase family.


ensembl_gene_id: Theco_1264
symbol: AGA57430.1
gene_biotype: protein_coding
description:
  PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: rhamnulokinase.


ensembl_gene_id: Theco_1267
symbol: AGA57433.1
gene_biotype: protein_coding
description:
  (4Fe-4S) cluster-containing protein; PFAM: Uncharacterised ACR, YkgG family COG1556; TIGRFAM: iron-sulfur cluster-binding protein.


ensembl_gene_id: Theco_1269
symbol: AGA57435.1
gene_biotype: protein_coding
description:
  PFAM: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); TIGRFAM: sporulation lipoprotein, YhcN/YlaJ family.


ensembl_gene_id: Theco_1270
symbol: AGA57436.1
gene_biotype: protein_coding
description:
  glycine/D-amino acid oxidase, deaminating; PFAM: FAD dependent oxidoreductase; Rieske [2Fe-2S] domain.


ensembl_gene_id: Theco_1279
symbol: AGA57445.1
gene_biotype: protein_coding
description:
  Transketolase, alpha subunit; PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain.


ensembl_gene_id: Theco_1287
symbol: AGA57453.1
gene_biotype: protein_coding
description:
  Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PFAM: Bacterial regulatory proteins, luxR family.


ensembl_gene_id: Theco_1294
symbol: AGA57460.1
gene_biotype: protein_coding
description:
  Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.


ensembl_gene_id: Theco_1303
symbol: AGA57469.1
gene_biotype: protein_coding
description:
  TOMM propeptide domain protein; PFAM: Nitrile hydratase, alpha chain; TIGRFAM: TOMM propeptide domain.


ensembl_gene_id: Theco_1313
symbol: xylA
gene_biotype: protein_coding
description:
  PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: xylose isomerase; Belongs to the xylose isomerase family.


ensembl_gene_id: Theco_1314
symbol: xylB
gene_biotype: protein_coding
description:
  D-xylulose kinase; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: D-xylulose kinase.


ensembl_gene_id: Theco_1325
symbol: AGA57490.1
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, permease protein PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: Theco_1326
symbol: AGA57491.1
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, permease protein PstA; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstA.


ensembl_gene_id: Theco_1327
symbol: pstB
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.


ensembl_gene_id: Theco_1328
symbol: AGA57493.1
gene_biotype: protein_coding
description:
  Phosphate transport system regulatory protein PhoU; Plays a role in the regulation of phosphate uptake.


ensembl_gene_id: Theco_1331
symbol: polA
gene_biotype: protein_coding
description:
  DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.


ensembl_gene_id: Theco_1332
symbol: mutM
gene_biotype: protein_coding
description:
  formamidopyrimidine-DNA glycosylase Fpg; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.


ensembl_gene_id: Theco_1334
symbol: coaE
gene_biotype: protein_coding
description:
  dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.


ensembl_gene_id: Theco_1337
symbol: nrdR
gene_biotype: protein_coding
description:
  Transcriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.


ensembl_gene_id: Theco_1344
symbol: AGA57503.1
gene_biotype: protein_coding
description:
  Glycosyl hydrolase, glucoamylase; PFAM: Glycosyl hydrolases family 15; TIGRFAM: oligosaccharide amylase.


ensembl_gene_id: Theco_1348
symbol: AGA57507.1
gene_biotype: protein_coding
description:
  ABC-type maltose transport systems, permease component; PFAM: Binding-protein-dependent transport system inner membrane component; manually curated.


ensembl_gene_id: Theco_1373
symbol: AGA57529.1
gene_biotype: protein_coding
description:
  Putative regulatory ligand binding protein, C-terminal domain of K+ channels like protein; PFAM: TrkA-C domain.


ensembl_gene_id: Theco_1376
symbol: AGA57531.1
gene_biotype: protein_coding
description:
  UbiD family decarboxylase; PFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: UbiD family decarboxylases; Belongs to the UbiD family.


ensembl_gene_id: Theco_1379
symbol: AGA57534.1
gene_biotype: protein_coding
description:
  Muramidase (flagellum-specific); PFAM: Copper amine oxidase N-terminal domain; Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase.


ensembl_gene_id: Theco_1394
symbol: AGA57549.1
gene_biotype: protein_coding
description:
  Phosphoglycerol transferase family protein, alkaline phosphatase superfamily; PFAM: Sulfatase; Belongs to the LTA synthase family.


ensembl_gene_id: Theco_1401
symbol: secD
gene_biotype: protein_coding
description:
  Protein-export membrane protein, SecD/SecF family; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.


ensembl_gene_id: Theco_1402
symbol: hemE
gene_biotype: protein_coding
description:
  Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.


ensembl_gene_id: Theco_1403
symbol: hemH
gene_biotype: protein_coding
description:
  Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.


ensembl_gene_id: Theco_1404
symbol: AGA57559.1
gene_biotype: protein_coding
description:
  Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.


ensembl_gene_id: Theco_1405
symbol: AGA57560.1
gene_biotype: protein_coding
description:
  Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation); PFAM: Bacterial capsule synthesis protein PGA_cap.


ensembl_gene_id: Theco_1407
symbol: AGA57562.1
gene_biotype: protein_coding
description:
  Response regulator containing a CheY-like receiver domain and an HD-GYP domain; PFAM: HD domain; GAF domain.


ensembl_gene_id: Theco_1410
symbol: AGA57565.1
gene_biotype: protein_coding
description:
  TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Theco_1422
symbol: pfkA
gene_biotype: protein_coding
description:
  6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.


ensembl_gene_id: Theco_1425
symbol: AGA57580.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Uncharacterized BCR, YitT family COG1284; Uncharacterized protein conserved in bacteria (DUF2179).


ensembl_gene_id: Theco_1426
symbol: cshA
gene_biotype: protein_coding
description:
  DNA/RNA helicase, superfamily II; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity; Belongs to the DEAD box helicase family. CshA subfamily.


ensembl_gene_id: Theco_1429
symbol: tpx
gene_biotype: protein_coding
description:
  Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.


ensembl_gene_id: Theco_1435
symbol: AGA57590.1
gene_biotype: protein_coding
description:
  Putative signal-transduction protein containing cAMP-binding and CBS domains; PFAM: Putative nucleotidyltransferase substrate binding domain; Putative nucleotidyltransferase DUF294.


ensembl_gene_id: Theco_1440
symbol: AGA57595.1
gene_biotype: protein_coding
description:
  PFAM: HMGL-like; LeuA allosteric (dimerisation) domain; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; Belongs to the alpha-IPM synthase/homocitrate synthase family.


ensembl_gene_id: Theco_1441
symbol: dinB
gene_biotype: protein_coding
description:
  nucleotidyltransferase/DNA polymerase involved in DNA repair; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.


ensembl_gene_id: Theco_1447
symbol: pyrD
gene_biotype: protein_coding
description:
  Dihydroorotate dehydrogenase, subfamily 2; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.


ensembl_gene_id: Theco_1452
symbol: AGA57607.1
gene_biotype: protein_coding
description:
  tRNA/rRNA cytosine-C5-methylase; PFAM: NOL1/NOP2/sun family; TIGRFAM: NOL1/NOP2/sun family putative RNA methylase.


ensembl_gene_id: Theco_1453
symbol: AGA57608.1
gene_biotype: protein_coding
description:
  PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: Theco_1470
symbol: xpt
gene_biotype: protein_coding
description:
  Xanthine phosphoribosyltransferase; Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis.


ensembl_gene_id: Theco_1478
symbol: AGA57629.1
gene_biotype: protein_coding
description:
  DNA/RNA helicase, superfamily II, SNF2 family; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain.


ensembl_gene_id: Theco_1479
symbol: AGA57630.1
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.


ensembl_gene_id: Theco_1480
symbol: AGA57631.1
gene_biotype: protein_coding
description:
  Putative ring-cleavage extradiol dioxygenase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.


ensembl_gene_id: Theco_1486
symbol: AGA57637.1
gene_biotype: protein_coding
description:
  ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter; TIGRFAM: daunorubicin resistance ABC transporter ATP-binding subunit.


ensembl_gene_id: Theco_1499
symbol: AGA57648.1
gene_biotype: protein_coding
description:
  PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E.


ensembl_gene_id: Theco_1503
symbol: AGA57652.1
gene_biotype: protein_coding
description:
  PFAM: Histidine biosynthesis protein; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type; Belongs to the HisA/HisF family.


ensembl_gene_id: Theco_1505
symbol: AGA57654.1
gene_biotype: protein_coding
description:
  DNA-binding domain-containing protein, AraC-type; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain.


ensembl_gene_id: Theco_1507
symbol: AGA57656.1
gene_biotype: protein_coding
description:
  DNA-binding domain-containing protein, AraC-type; PFAM: Cupin domain; Bacterial regulatory helix-turn-helix proteins, AraC family.


ensembl_gene_id: Theco_1537
symbol: AGA57676.1
gene_biotype: protein_coding
description:
  PFAM: Glycosyl hydrolase family 3 C terminal domain; Glycosyl hydrolase family 3 N terminal domain; Carbohydrate binding module (family 6); Belongs to the glycosyl hydrolase 3 family.


ensembl_gene_id: Theco_1547
symbol: AGA57685.1
gene_biotype: protein_coding
description:
  RRNA methyltransferase AviRa; PFAM: Putative RNA methylase family UPF0020; RRNA methyltransferase AviRa.


ensembl_gene_id: Theco_1553
symbol: AGA57691.1
gene_biotype: protein_coding
description:
  Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol.


ensembl_gene_id: Theco_1563
symbol: uppP
gene_biotype: protein_coding
description:
  Undecaprenyl-diphosphatase UppP; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.


ensembl_gene_id: Theco_1578
symbol: cobT
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).


ensembl_gene_id: Theco_1580
symbol: cobS
gene_biotype: protein_coding
description:
  Cobalamin 5''-phosphate synthase/cobalamin synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.


ensembl_gene_id: Theco_1581
symbol: AGA57719.1
gene_biotype: protein_coding
description:
  ATP-dependent helicase HrpB; PFAM: Helicase conserved C-terminal domain; Helicase associated domain (HA2); ATP-dependent helicase C-terminal; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent helicase HrpB.


ensembl_gene_id: Theco_1589
symbol: AGA57727.1
gene_biotype: protein_coding
description:
  Putative dehydrogenase; PFAM: Oxidoreductase family, C-terminal alpha/beta domain; Oxidoreductase family, NAD-binding Rossmann fold.


ensembl_gene_id: Theco_1596
symbol: gluQ
gene_biotype: protein_coding
description:
  Glutamyl-queuosine tRNA(Asp) synthetase; Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2- cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon; Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily.


ensembl_gene_id: Theco_1600
symbol: AGA57738.1
gene_biotype: protein_coding
description:
  Phosphoesterase, MJ0936 family; PFAM: Calcineurin-like phosphoesterase; TIGRFAM: phosphoesterase, MJ0936 family.


ensembl_gene_id: Theco_1603
symbol: AGA57741.1
gene_biotype: protein_coding
description:
  Bacillithiol system protein YtxJ; PFAM: Protein of unknown function (DUF2847); TIGRFAM: bacillithiol system protein YtxJ.


ensembl_gene_id: Theco_1607
symbol: AGA57745.1
gene_biotype: protein_coding
description:
  PFAM: HD domain; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase, putative; Belongs to the dGTPase family. Type 2 subfamily.


ensembl_gene_id: Theco_1608
symbol: AGA57746.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein.


ensembl_gene_id: Theco_1625
symbol: AGA57762.1
gene_biotype: protein_coding
description:
  Transcriptional regulator/sugar kinase; PFAM: ROK family; TIGRFAM: ROK family protein (putative glucokinase).


ensembl_gene_id: Theco_1632
symbol: AGA57768.1
gene_biotype: protein_coding
description:
  PFAM: ATPase family associated with various cellular activities (AAA); Belongs to the AAA ATPase family.


ensembl_gene_id: Theco_1635
symbol: AGA57771.1
gene_biotype: protein_coding
description:
  ABC-type proline/glycine betaine transport system, periplasmic component; PFAM: Substrate binding domain of ABC-type glycine betaine transport system.


ensembl_gene_id: Theco_1636
symbol: AGA57772.1
gene_biotype: protein_coding
description:
  ABC-type proline/glycine betaine transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.


ensembl_gene_id: Theco_1637
symbol: AGA57773.1
gene_biotype: protein_coding
description:
  PFAM: ABC transporter; CBS domain; TIGRFAM: glycine betaine/L-proline transport ATP binding subunit.


ensembl_gene_id: Theco_1645
symbol: AGA57779.1
gene_biotype: protein_coding
description:
  Spore cortex-lytic enzyme; PFAM: Putative peptidoglycan binding domain; Cell Wall Hydrolase; TIGRFAM: spore cortex-lytic enzyme.


ensembl_gene_id: Theco_1647
symbol: AGA57781.1
gene_biotype: protein_coding
description:
  PFAM: E1-E2 ATPase; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase.


ensembl_gene_id: Theco_1648
symbol: AGA57782.1
gene_biotype: protein_coding
description:
  Putative xylanase/chitin deacetylase; PFAM: Acetyltransferase (GNAT) family; Polysaccharide deacetylase.


ensembl_gene_id: Theco_1650
symbol: AGA57784.1
gene_biotype: protein_coding
description:
  Zn-dependent oxidoreductase, NADPH:quinone reductase; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase.


ensembl_gene_id: Theco_1663
symbol: AGA57797.1
gene_biotype: protein_coding
description:
  Nucleoside-diphosphate-sugar pyrophosphorylase family protein; PFAM: Nucleotidyl transferase; Bacterial transferase hexapeptide (three repeats).


ensembl_gene_id: Theco_1665
symbol: AGA57799.1
gene_biotype: protein_coding
description:
  Putative oxidoreductase, aryl-alcohol dehydrogenase like protein; PFAM: Aldo/keto reductase family; TIGRFAM: voltage-dependent potassium channel beta subunit, animal.


ensembl_gene_id: Theco_1669
symbol: AGA57803.1
gene_biotype: protein_coding
description:
  ATPase component of ABC-type sugar transporter; PFAM: ABC transporter; Belongs to the ABC transporter superfamily.


ensembl_gene_id: Theco_1672
symbol: AGA57806.1
gene_biotype: protein_coding
description:
  Uncharacterized protein, YkwD family; PFAM: Cysteine-rich secretory protein family; LysM domain; TIGRFAM: spore coat assembly protein SafA; uncharacterized protein, YkwD family.


ensembl_gene_id: Theco_1678
symbol: AGA57811.1
gene_biotype: protein_coding
description:
  Molecular chaperone (small heat shock protein); PFAM: Hsp20/alpha crystallin family; Belongs to the small heat shock protein (HSP20) family.


ensembl_gene_id: Theco_1687
symbol: AGA57820.1
gene_biotype: protein_coding
description:
  Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase; PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain.


ensembl_gene_id: Theco_1693
symbol: AGA57826.1
gene_biotype: protein_coding
description:
  PFAM: Glycerate kinase family; TIGRFAM: glycerate kinase; Belongs to the glycerate kinase type-1 family.


ensembl_gene_id: Theco_1697
symbol: AGA57829.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Uncharacterised ACR, COG2135; Belongs to the SOS response-associated peptidase family.


ensembl_gene_id: Theco_1699
symbol: AGA57831.1
gene_biotype: protein_coding
description:
  PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: putative bacillithiol system thiol disulfide oxidoreductase, YpdA family.


ensembl_gene_id: Theco_1702
symbol: AGA57834.1
gene_biotype: protein_coding
description:
  2-oxoacid:ferredoxin oxidoreductase, alpha subunit; PFAM: domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain.


ensembl_gene_id: Theco_1703
symbol: AGA57835.1
gene_biotype: protein_coding
description:
  PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family.


ensembl_gene_id: Theco_1710
symbol: AGA57842.1
gene_biotype: protein_coding
description:
  PFAM: Toprim domain; DNA topoisomerase; TIGRFAM: DNA topoisomerase III, bacteria and conjugative plasmid.


ensembl_gene_id: Theco_1712
symbol: AGA57844.1
gene_biotype: protein_coding
description:
  PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthases, NADH/NADPH, small subunit.


ensembl_gene_id: Theco_1713
symbol: AGA57845.1
gene_biotype: protein_coding
description:
  Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.


ensembl_gene_id: Theco_1714
symbol: thyA
gene_biotype: protein_coding
description:
  Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis.


ensembl_gene_id: Theco_1716
symbol: AGA57848.1
gene_biotype: protein_coding
description:
  Dihydrolipoamide dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; TIGRFAM: dihydrolipoamide dehydrogenase.


ensembl_gene_id: Theco_1717
symbol: AGA57849.1
gene_biotype: protein_coding
description:
  PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form.


ensembl_gene_id: Theco_1718
symbol: AGA57850.1
gene_biotype: protein_coding
description:
  Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit; PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain.


ensembl_gene_id: Theco_1719
symbol: pdhA
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase E1 component, alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).


ensembl_gene_id: Theco_1723
symbol: AGA57855.1
gene_biotype: protein_coding
description:
  PFAM: Thiamin pyrophosphokinase, vitamin B1 binding domain; Thiamin pyrophosphokinase, catalytic domain; TIGRFAM: thiamine pyrophosphokinase.


ensembl_gene_id: Theco_1734
symbol: AGA57866.1
gene_biotype: protein_coding
description:
  ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA; PFAM: ABC transporter.


ensembl_gene_id: Theco_1736
symbol: AGA57868.1
gene_biotype: protein_coding
description:
  Apurinic endonuclease APN1; PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: apurinic endonuclease (APN1).


ensembl_gene_id: Theco_1737
symbol: AGA57869.1
gene_biotype: protein_coding
description:
  PFAM: Formamidopyrimidine-DNA glycosylase H2TH domain; Formamidopyrimidine-DNA glycosylase N-terminal domain; Zinc finger found in FPG and IleRS; TIGRFAM: formamidopyrimidine-DNA glycosylase (fpg); Belongs to the FPG family.


ensembl_gene_id: Theco_1739
symbol: AGA57871.1
gene_biotype: protein_coding
description:
  Helicase family protein with metal-binding cysteine cluster; PFAM: Helicase conserved C-terminal domain; Domain of unknown function (DUF1998); DEAD/DEAH box helicase.


ensembl_gene_id: Theco_1741
symbol: rnz
gene_biotype: protein_coding
description:
  Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.


ensembl_gene_id: Theco_1742
symbol: AGA57874.1
gene_biotype: protein_coding
description:
  5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.


ensembl_gene_id: Theco_1743
symbol: mtnD
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway.


ensembl_gene_id: Theco_1748
symbol: lexA
gene_biotype: protein_coding
description:
  SOS regulatory protein LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.


ensembl_gene_id: Theco_1749
symbol: AGA57881.1
gene_biotype: protein_coding
description:
  PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase, type I.


ensembl_gene_id: Theco_1751
symbol: AGA57883.1
gene_biotype: protein_coding
description:
  Cystathionine beta-lyase family protein involved in aluminum resistance; PFAM: Aluminium resistance protein.


ensembl_gene_id: Theco_1752
symbol: hflX
gene_biotype: protein_coding
description:
  GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.


ensembl_gene_id: Theco_1753
symbol: AGA57885.1
gene_biotype: protein_coding
description:
  PFAM: ATPase family associated with various cellular activities (AAA); TIGRFAM: stage V sporulation protein K.


ensembl_gene_id: Theco_1756
symbol: AGA57888.1
gene_biotype: protein_coding
description:
  Penicillin-binding protein, 1A family; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; TIGRFAM: penicillin-binding protein, 1A family.


ensembl_gene_id: Theco_1757
symbol: hfq
gene_biotype: protein_coding
description:
  RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.


ensembl_gene_id: Theco_1758
symbol: miaA
gene_biotype: protein_coding
description:
  tRNA isopentenyltransferase MiaA; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.


ensembl_gene_id: Theco_1759
symbol: AGA57891.1
gene_biotype: protein_coding
description:
  Methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Protein of unknown function (DUF548).


ensembl_gene_id: Theco_1760
symbol: mutL
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.


ensembl_gene_id: Theco_1761
symbol: mutS
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.


ensembl_gene_id: Theco_1767
symbol: AGA57899.1
gene_biotype: protein_coding
description:
  Zn-dependent carboxypeptidase; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues.


ensembl_gene_id: Theco_1776
symbol: AGA57907.1
gene_biotype: protein_coding
description:
  Putative naringenin-chalcone synthase; PFAM: Chalcone and stilbene synthases, N-terminal domain; Chalcone and stilbene synthases, C-terminal domain.


ensembl_gene_id: Theco_1782
symbol: parC
gene_biotype: protein_coding
description:
  DNA topoisomerase IV, A subunit, Gram-positive/DNA gyrase, A subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 2 subfamily.


ensembl_gene_id: Theco_1783
symbol: AGA57914.1
gene_biotype: protein_coding
description:
  DNA topoisomerase IV, B subunit, Gram-positive; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus; TIGRFAM: DNA topoisomerase IV, B subunit, Gram-positive; DNA gyrase, B subunit.


ensembl_gene_id: Theco_1788
symbol: nth
gene_biotype: protein_coding
description:
  Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.


ensembl_gene_id: Theco_1791
symbol: AGA57922.1
gene_biotype: protein_coding
description:
  N-acetylmuramoyl-L-alanine amidase; PFAM: Copper amine oxidase N-terminal domain; N-acetylmuramoyl-L-alanine amidase.


ensembl_gene_id: Theco_1792
symbol: leuD
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.


ensembl_gene_id: Theco_1793
symbol: leuC
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.


ensembl_gene_id: Theco_1799
symbol: proB
gene_biotype: protein_coding
description:
  Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.


ensembl_gene_id: Theco_1800
symbol: proA
gene_biotype: protein_coding
description:
  Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.


ensembl_gene_id: Theco_1801
symbol: proC
gene_biotype: protein_coding
description:
  Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.


ensembl_gene_id: Theco_1802
symbol: AGA57933.1
gene_biotype: protein_coding
description:
  2,3-diketo-5-methylthiopentyl-1-phosphate enolase; PFAM: Ribulose bisphosphate carboxylase large chain, catalytic domain; TIGRFAM: 2,3-diketo-5-methylthiopentyl-1-phosphate enolase.


ensembl_gene_id: Theco_1803
symbol: mtnX
gene_biotype: protein_coding
description:
  2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Dephosphorylates 2-hydroxy-3-keto-5-methylthiopentenyl-1- phosphate (HK-MTPenyl-1-P) yielding 1,2-dihydroxy-3-keto-5- methylthiopentene (DHK-MTPene).


ensembl_gene_id: Theco_1804
symbol: mtnB
gene_biotype: protein_coding
description:
  Methylthioribulose-1-phosphate dehydratase; Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P). Belongs to the aldolase class II family. MtnB subfamily.


ensembl_gene_id: Theco_1805
symbol: AGA57936.1
gene_biotype: protein_coding
description:
  DnaD-like protein; PFAM: Replication initiation and membrane attachment protein (DnaB); TIGRFAM: DnaD and phage-associated domain.


ensembl_gene_id: Theco_1806
symbol: ackA
gene_biotype: protein_coding
description:
  Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.


ensembl_gene_id: Theco_1807
symbol: AGA57938.1
gene_biotype: protein_coding
description:
  PFAM: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain.


ensembl_gene_id: Theco_1808
symbol: AGA57939.1
gene_biotype: protein_coding
description:
  ATP-dependent Zn protease; PFAM: Peptidase family M41; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH; Belongs to the AAA ATPase family.


ensembl_gene_id: Theco_1811
symbol: mtaD
gene_biotype: protein_coding
description:
  Cytosine deaminase-like metal-dependent hydrolase; Catalyzes the deamination of 5-methylthioadenosine and S- adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine. Belongs to the metallo-dependent hydrolases superfamily. MTA/SAH deaminase family.


ensembl_gene_id: Theco_1812
symbol: rex
gene_biotype: protein_coding
description:
  AT-rich DNA-binding protein; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.


ensembl_gene_id: Theco_1815
symbol: panD
gene_biotype: protein_coding
description:
  L-aspartate-alpha-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.


ensembl_gene_id: Theco_1816
symbol: panC
gene_biotype: protein_coding
description:
  Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.


ensembl_gene_id: Theco_1817
symbol: panB
gene_biotype: protein_coding
description:
  3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.


ensembl_gene_id: Theco_1818
symbol: birA
gene_biotype: protein_coding
description:
  birA, biotin-(acetyl-CoA-carboxylase) ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.


ensembl_gene_id: Theco_1823
symbol: dapB
gene_biotype: protein_coding
description:
  Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.


ensembl_gene_id: Theco_1835
symbol: AGA57966.1
gene_biotype: protein_coding
description:
  Fructose-2,6-bisphosphatase; PFAM: Phosphoglycerate mutase family; Belongs to the phosphoglycerate mutase family.


ensembl_gene_id: Theco_1839
symbol: hisC
gene_biotype: protein_coding
description:
  PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.


ensembl_gene_id: Theco_1840
symbol: trpA
gene_biotype: protein_coding
description:
  Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.


ensembl_gene_id: Theco_1841
symbol: trpB
gene_biotype: protein_coding
description:
  Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.


ensembl_gene_id: Theco_1844
symbol: trpD
gene_biotype: protein_coding
description:
  Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).


ensembl_gene_id: Theco_1845
symbol: trpE
gene_biotype: protein_coding
description:
  Anthranilate synthase component I; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...]


ensembl_gene_id: Theco_1846
symbol: AGA57977.1
gene_biotype: protein_coding
description:
  Monofunctional chorismate mutase, clade 1; Catalyzes the Claisen rearrangement of chorismate to prephenate. Probably involved in the aromatic amino acid biosynthesis.


ensembl_gene_id: Theco_1847
symbol: aroB
gene_biotype: protein_coding
description:
  3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).


ensembl_gene_id: Theco_1848
symbol: aroC
gene_biotype: protein_coding
description:
  Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.


ensembl_gene_id: Theco_1850
symbol: AGA57981.1
gene_biotype: protein_coding
description:
  Methylase of chemotaxis methyl-accepting protein; PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain.


ensembl_gene_id: Theco_1852
symbol: AGA57983.1
gene_biotype: protein_coding
description:
  Geranylgeranyl pyrophosphate synthase; PFAM: Polyprenyl synthetase; TIGRFAM: heptaprenyl diphosphate synthase component II; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: Theco_1853
symbol: mqnA
gene_biotype: protein_coding
description:
  Putative periplasmic solute-binding protein; Catalyzes the dehydration of chorismate into 3-[(1- carboxyvinyl)oxy]benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2).


ensembl_gene_id: Theco_1854
symbol: ubiX
gene_biotype: protein_coding
description:
  Polyprenyl p-hydroxybenzoate/phenylacrylic acid decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.


ensembl_gene_id: Theco_1855
symbol: AGA57986.1
gene_biotype: protein_coding
description:
  PFAM: UbiA prenyltransferase family; TIGRFAM: putative 4-hydroxybenzoate polyprenyltransferase; Belongs to the UbiA prenyltransferase family.


ensembl_gene_id: Theco_1856
symbol: menG
gene_biotype: protein_coding
description:
  Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2).


ensembl_gene_id: Theco_1857
symbol: AGA57988.1
gene_biotype: protein_coding
description:
  Geranylgeranyl pyrophosphate synthase; PFAM: Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1.


ensembl_gene_id: Theco_1861
symbol: AGA57991.1
gene_biotype: protein_coding
description:
  Bacterial nucleoid DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.


ensembl_gene_id: Theco_1862
symbol: AGA57992.1
gene_biotype: protein_coding
description:
  Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.


ensembl_gene_id: Theco_1868
symbol: gpsA
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: Theco_1869
symbol: plsY
gene_biotype: protein_coding
description:
  Acyl-phosphate glycerol 3-phosphate acyltransferase; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.


ensembl_gene_id: Theco_1870
symbol: der
gene_biotype: protein_coding
description:
  Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.


ensembl_gene_id: Theco_1879
symbol: AGA58009.1
gene_biotype: protein_coding
description:
  Putative membrane protein; Involved in the degradation of specific anti-sigma factors. Belongs to the protease PrsW family.


ensembl_gene_id: Theco_1880
symbol: AGA58010.1
gene_biotype: protein_coding
description:
  Negative regulator of genetic competence, sporulation and motility; Enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis; Belongs to the MecA family.


ensembl_gene_id: Theco_1887
symbol: AGA58017.1
gene_biotype: protein_coding
description:
  PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; ACT domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, beta subunit; D-3-phosphoglycerate dehydrogenase.


ensembl_gene_id: Theco_1888
symbol: AGA58018.1
gene_biotype: protein_coding
description:
  PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold.


ensembl_gene_id: Theco_1890
symbol: AGA58020.1
gene_biotype: protein_coding
description:
  ABC-type transport system involved in cytochrome c biogenesis, permease component; PFAM: Cytochrome C assembly protein; TIGRFAM: cytochrome c-type biogenesis protein CcsB.


ensembl_gene_id: Theco_1899
symbol: scpB
gene_biotype: protein_coding
description:
  Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: Theco_1900
symbol: scpA
gene_biotype: protein_coding
description:
  Hypothetical protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: Theco_1901
symbol: ribH
gene_biotype: protein_coding
description:
  6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin; Belongs to the DMRL synthase family.


ensembl_gene_id: Theco_1902
symbol: ribBA
gene_biotype: protein_coding
description:
  GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.


ensembl_gene_id: Theco_1904
symbol: AGA58034.1
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.


ensembl_gene_id: Theco_1907
symbol: AGA58037.1
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.


ensembl_gene_id: Theco_1908
symbol: lysA
gene_biotype: protein_coding
description:
  Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.


ensembl_gene_id: Theco_1914
symbol: AGA58043.1
gene_biotype: protein_coding
description:
  RNA polymerase sigma-F factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: Theco_1915
symbol: spoIIAB
gene_biotype: protein_coding
description:
  Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.


ensembl_gene_id: Theco_1916
symbol: AGA58045.1
gene_biotype: protein_coding
description:
  PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor; anti-sigma F factor antagonist; Belongs to the anti-sigma-factor antagonist family.


ensembl_gene_id: Theco_1917
symbol: AGA58046.1
gene_biotype: protein_coding
description:
  PFAM: D-alanyl-D-alanine carboxypeptidase; Penicillin-binding protein 5, C-terminal domain; Belongs to the peptidase S11 family.


ensembl_gene_id: Theco_1932
symbol: AGA58056.1
gene_biotype: protein_coding
description:
  ABC-type multidrug transport system, ATPase and permease component; PFAM: ABC transporter transmembrane region.


ensembl_gene_id: Theco_1935
symbol: AGA58057.1
gene_biotype: protein_coding
description:
  Pyrimidine-nucleoside phosphorylase; PFAM: Glycosyl transferase family, a/b domain; Pyrimidine nucleoside phosphorylase C-terminal domain; Glycosyl transferase family, helical bundle domain; TIGRFAM: pyrimidine-nucleoside phosphorylase.


ensembl_gene_id: Theco_1937
symbol: AGA58059.1
gene_biotype: protein_coding
description:
  Purine nucleoside phosphorylase I, inosine and guanosine-specific; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.


ensembl_gene_id: Theco_1938
symbol: deoB
gene_biotype: protein_coding
description:
  Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.


ensembl_gene_id: Theco_1939
symbol: xerC
gene_biotype: protein_coding
description:
  Site-specific recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: Theco_1941
symbol: AGA58063.1
gene_biotype: protein_coding
description:
  Fe2+/Zn2+ uptake regulation protein; PFAM: Ferric uptake regulator family; Belongs to the Fur family.


ensembl_gene_id: Theco_1952
symbol: AGA58074.1
gene_biotype: protein_coding
description:
  Peptidase T-like protein; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: peptidase T-like protein.


ensembl_gene_id: Theco_1954
symbol: lipB
gene_biotype: protein_coding
description:
  Lipoate-protein ligase B; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.


ensembl_gene_id: Theco_1955
symbol: AGA58077.1
gene_biotype: protein_coding
description:
  Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component; PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme.


ensembl_gene_id: Theco_1957
symbol: AGA58079.1
gene_biotype: protein_coding
description:
  Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component alpha subunit; PFAM: Dehydrogenase E1 component.


ensembl_gene_id: Theco_1962
symbol: AGA58084.1
gene_biotype: protein_coding
description:
  Sporulation transcription factor Spo0A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.


ensembl_gene_id: Theco_1963
symbol: AGA58085.1
gene_biotype: protein_coding
description:
  Stage IV sporulation protein B; PFAM: SpoIVB peptidase S55; PDZ domain (Also known as DHR or GLGF); TIGRFAM: stage IV sporulation protein B.


ensembl_gene_id: Theco_1968
symbol: dxs
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.


ensembl_gene_id: Theco_1969
symbol: AGA58091.1
gene_biotype: protein_coding
description:
  Geranylgeranyl pyrophosphate synthase; PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: Theco_1970
symbol: xseB
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.


ensembl_gene_id: Theco_1971
symbol: xseA
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.


ensembl_gene_id: Theco_1972
symbol: folD
gene_biotype: protein_coding
description:
  5,10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.


ensembl_gene_id: Theco_1973
symbol: nusB
gene_biotype: protein_coding
description:
  Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.


ensembl_gene_id: Theco_1977
symbol: AGA58099.1
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, biotin carboxylase subunit; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: Theco_1978
symbol: AGA58100.1
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: Theco_1983
symbol: AGA58105.1
gene_biotype: protein_coding
description:
  PFAM: Stage III sporulation protein AC/AD protein family; TIGRFAM: stage III sporulation protein AD.


ensembl_gene_id: Theco_1984
symbol: AGA58106.1
gene_biotype: protein_coding
description:
  PFAM: Stage III sporulation protein AC/AD protein family; TIGRFAM: stage III sporulation protein AC.


ensembl_gene_id: Theco_1990
symbol: AGA58112.1
gene_biotype: protein_coding
description:
  PFAM: ACT domain; Amino acid kinase family; TIGRFAM: aspartate kinase, monofunctional class; aspartate kinase; Belongs to the aspartokinase family.


ensembl_gene_id: Theco_1991
symbol: efp
gene_biotype: protein_coding
description:
  Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.


ensembl_gene_id: Theco_1993
symbol: aroQ
gene_biotype: protein_coding
description:
  3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.


ensembl_gene_id: Theco_1994
symbol: AGA58116.1
gene_biotype: protein_coding
description:
  Penicillin-binding protein, beta-lactamase class C; PFAM: Beta-lactamase; Belongs to the class-A beta-lactamase family.


ensembl_gene_id: Theco_1995
symbol: AGA58117.1
gene_biotype: protein_coding
description:
  ABC-type Fe3+-hydroxamate transport system, periplasmic component; PFAM: Periplasmic binding protein; Bacterial regulatory helix-turn-helix proteins, AraC family.


ensembl_gene_id: Theco_1999
symbol: mntR
gene_biotype: protein_coding
description:
  Mn-dependent transcriptional regulator; Central regulator of manganese homeostasis. Belongs to the DtxR/MntR family.


ensembl_gene_id: Theco_2003
symbol: AGA58125.1
gene_biotype: protein_coding
description:
  ABC-type metal ion transport system, periplasmic component/surface adhesin; PFAM: Periplasmic solute binding protein family; Belongs to the bacterial solute-binding protein 9 family.


ensembl_gene_id: Theco_2004
symbol: metG
gene_biotype: protein_coding
description:
  Protein containing C-terminal region/beta chain of methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.


ensembl_gene_id: Theco_2005
symbol: AGA58127.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.


ensembl_gene_id: Theco_2014
symbol: AGA58136.1
gene_biotype: protein_coding
description:
  ATPase component of various ABC-type transport systems with duplicated ATPase domain; PFAM: ABC transporter; Cobalt ATP-binding cassette C terminal.


ensembl_gene_id: Theco_2016
symbol: AGA58138.1
gene_biotype: protein_coding
description:
  Putative membrane protein; PFAM: Protein of unknown function (DUF964); Belongs to the UPF0342 family.


ensembl_gene_id: Theco_2017
symbol: miaB
gene_biotype: protein_coding
description:
  tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.


ensembl_gene_id: Theco_2018
symbol: AGA58140.1
gene_biotype: protein_coding
description:
  Propanediol utilization protein; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate.


ensembl_gene_id: Theco_2019
symbol: AGA58141.1
gene_biotype: protein_coding
description:
  2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family; PFAM: Pyruvate ferredoxin oxidoreductase beta subunit C terminal; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family.


ensembl_gene_id: Theco_2020
symbol: AGA58142.1
gene_biotype: protein_coding
description:
  2-oxoacid:acceptor oxidoreductase, alpha subunit; PFAM: domain; Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, alpha subunit.


ensembl_gene_id: Theco_2021
symbol: AGA58143.1
gene_biotype: protein_coding
description:
  Zn-dependent dipeptidase, microsomal dipeptidase; PFAM: Membrane dipeptidase (Peptidase family M19).


ensembl_gene_id: Theco_2026
symbol: recA
gene_biotype: protein_coding
description:
  Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.


ensembl_gene_id: Theco_2027
symbol: cinA
gene_biotype: protein_coding
description:
  PFAM: Probable molybdopterin binding domain; Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA N-terminal domain; competence/damage-inducible protein CinA C-terminal domain; molybdenum cofactor synthesis domain.


ensembl_gene_id: Theco_2028
symbol: AGA58150.1
gene_biotype: protein_coding
description:
  PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: Theco_2029
symbol: rimO
gene_biotype: protein_coding
description:
  Ribosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.


ensembl_gene_id: Theco_2036
symbol: AGA58158.1
gene_biotype: protein_coding
description:
  Putative Zn-dependent peptidase; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16).


ensembl_gene_id: Theco_2039
symbol: AGA58161.1
gene_biotype: protein_coding
description:
  DNA segregation ATPase, FtsK/SpoIIIE family; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family; Belongs to the FtsK/SpoIIIE/SftA family.


ensembl_gene_id: Theco_2042
symbol: rnj
gene_biotype: protein_coding
description:
  Hypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay; Belongs to the metallo-beta-lactamase superfamily. RNA- metabolizing metallo-beta-lactamase-like family. Bacterial RNase J subfamily.


ensembl_gene_id: Theco_2043
symbol: dapA
gene_biotype: protein_coding
description:
  Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).


ensembl_gene_id: Theco_2044
symbol: AGA58166.1
gene_biotype: protein_coding
description:
  PFAM: Amino acid kinase family; ACT domain; TIGRFAM: aspartate kinase, monofunctional class; aspartate kinase; Belongs to the aspartokinase family.


ensembl_gene_id: Theco_2045
symbol: asd
gene_biotype: protein_coding
description:
  Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.


ensembl_gene_id: Theco_2047
symbol: AGA58169.1
gene_biotype: protein_coding
description:
  Dipicolinic acid synthetase, A subunit; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; TIGRFAM: dipicolinic acid synthetase, A subunit.


ensembl_gene_id: Theco_2048
symbol: dut
gene_biotype: protein_coding
description:
  Deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.


ensembl_gene_id: Theco_2049
symbol: AGA58171.1
gene_biotype: protein_coding
description:
  Putative Zn-dependent peptidase; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16); Belongs to the peptidase M16 family.


ensembl_gene_id: Theco_2050
symbol: AGA58172.1
gene_biotype: protein_coding
description:
  Putative xylanase/chitin deacetylase; PFAM: Polysaccharide deacetylase; TIGRFAM: probable sporulation protein, polysaccharide deacetylase family.


ensembl_gene_id: Theco_2051
symbol: pnp
gene_biotype: protein_coding
description:
  Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.


ensembl_gene_id: Theco_2052
symbol: rpsO
gene_biotype: protein_coding
description:
  Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.


ensembl_gene_id: Theco_2053
symbol: AGA58175.1
gene_biotype: protein_coding
description:
  PFAM: Riboflavin kinase; FAD synthetase; TIGRFAM: riboflavin kinase/FMN adenylyltransferase; Belongs to the ribF family.


ensembl_gene_id: Theco_2054
symbol: truB
gene_biotype: protein_coding
description:
  tRNA pseudouridine 55 synthase; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.


ensembl_gene_id: Theco_2056
symbol: rbfA
gene_biotype: protein_coding
description:
  Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.


ensembl_gene_id: Theco_2057
symbol: infB
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.


ensembl_gene_id: Theco_2059
symbol: AGA58181.1
gene_biotype: protein_coding
description:
  Putative nucleic-acid-binding protein implicated in transcription termination; PFAM: Protein of unknown function (DUF448).


ensembl_gene_id: Theco_2060
symbol: nusA
gene_biotype: protein_coding
description:
  Transcription termination factor NusA; Participates in both transcription termination and antitermination.


ensembl_gene_id: Theco_2061
symbol: rimP
gene_biotype: protein_coding
description:
  Hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.


ensembl_gene_id: Theco_2062
symbol: polC
gene_biotype: protein_coding
description:
  DNA polymerase III, alpha chain; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.


ensembl_gene_id: Theco_2063
symbol: proS
gene_biotype: protein_coding
description:
  prolyl-tRNA synthetase, family I; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro).


ensembl_gene_id: Theco_2064
symbol: AGA58186.1
gene_biotype: protein_coding
description:
  RIP metalloprotease RseP; PFAM: Peptidase family M50; PDZ domain (Also known as DHR or GLGF); TIGRFAM: RIP metalloprotease RseP.


ensembl_gene_id: Theco_2065
symbol: dxr
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.


ensembl_gene_id: Theco_2067
symbol: AGA58189.1
gene_biotype: protein_coding
description:
  Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.


ensembl_gene_id: Theco_2068
symbol: frr
gene_biotype: protein_coding
description:
  Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.


ensembl_gene_id: Theco_2070
symbol: tsf
gene_biotype: protein_coding
description:
  Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.


ensembl_gene_id: Theco_2071
symbol: rpsB
gene_biotype: protein_coding
description:
  PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type; Belongs to the universal ribosomal protein uS2 family.


ensembl_gene_id: Theco_2075
symbol: AGA58197.1
gene_biotype: protein_coding
description:
  Putative polymerase with PALM domain, HD hydrolase domain and Zn ribbon; PFAM: Protein of unknown function (DUF342).


ensembl_gene_id: Theco_2076
symbol: AGA58198.1
gene_biotype: protein_coding
description:
  PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family.


ensembl_gene_id: Theco_2078
symbol: cheD
gene_biotype: protein_coding
description:
  Chemotaxis protein; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.


ensembl_gene_id: Theco_2081
symbol: AGA58203.1
gene_biotype: protein_coding
description:
  Chemotaxis protein histidine kinase-like protein; PFAM: CheW-like domain; P2 response regulator binding domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Signal transducing histidine kinase, homodimeric domain; Hpt domain.


ensembl_gene_id: Theco_2082
symbol: cheB
gene_biotype: protein_coding
description:
  Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.


ensembl_gene_id: Theco_2085
symbol: flhA
gene_biotype: protein_coding
description:
  Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.


ensembl_gene_id: Theco_2086
symbol: flhB
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.


ensembl_gene_id: Theco_2087
symbol: AGA58209.1
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.


ensembl_gene_id: Theco_2088
symbol: fliQ
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.


ensembl_gene_id: Theco_2089
symbol: fliP
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.


ensembl_gene_id: Theco_2092
symbol: AGA58214.1
gene_biotype: protein_coding
description:
  Flagellar motor switch protein FliN; PFAM: Surface presentation of antigens (SPOA); CheC-like family; TIGRFAM: flagellar motor switch protein FliN.


ensembl_gene_id: Theco_2093
symbol: AGA58215.1
gene_biotype: protein_coding
description:
  PFAM: Surface presentation of antigens (SPOA); Flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM.


ensembl_gene_id: Theco_2094
symbol: AGA58216.1
gene_biotype: protein_coding
description:
  Flagellar basal body-associated protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.


ensembl_gene_id: Theco_2096
symbol: AGA58218.1
gene_biotype: protein_coding
description:
  PFAM: Flagella basal body rod protein; Domain of unknown function (DUF1078); TIGRFAM: fagellar hook-basal body proteins.


ensembl_gene_id: Theco_2097
symbol: AGA58219.1
gene_biotype: protein_coding
description:
  Flagellar operon protein; PFAM: Protein of unknown function (DUF3766); TIGRFAM: flagellar operon protein.


ensembl_gene_id: Theco_2102
symbol: AGA58224.1
gene_biotype: protein_coding
description:
  Flagellar protein export ATPase FliI; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATPase FliI/YscN family; flagellar protein export ATPase FliI.


ensembl_gene_id: Theco_2104
symbol: AGA58226.1
gene_biotype: protein_coding
description:
  Flagellar motor switch protein FliG; PFAM: FliG C-terminal domain; Histidine biosynthesis protein; TIGRFAM: flagellar motor switch protein FliG.


ensembl_gene_id: Theco_2105
symbol: AGA58227.1
gene_biotype: protein_coding
description:
  Flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.


ensembl_gene_id: Theco_2106
symbol: fliE
gene_biotype: protein_coding
description:
  PFAM: Flagellar hook-basal body complex protein FliE; TIGRFAM: flagellar hook-basal body complex protein FliE.


ensembl_gene_id: Theco_2107
symbol: AGA58229.1
gene_biotype: protein_coding
description:
  Flagellar basal-body rod protein FlgC; PFAM: Flagella basal body rod protein; Domain of unknown function (DUF1078); TIGRFAM: flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.


ensembl_gene_id: Theco_2108
symbol: AGA58230.1
gene_biotype: protein_coding
description:
  Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.


ensembl_gene_id: Theco_2109
symbol: codY
gene_biotype: protein_coding
description:
  GTP-sensing transcriptional pleiotropic repressor CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; Belongs to the CodY family.


ensembl_gene_id: Theco_2110
symbol: hslU
gene_biotype: protein_coding
description:
  ATP-dependent protease HslVU, ATPase subunit; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis.


ensembl_gene_id: Theco_2111
symbol: hslV
gene_biotype: protein_coding
description:
  ATP-dependent protease HslVU, peptidase subunit; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.


ensembl_gene_id: Theco_2112
symbol: trmFO
gene_biotype: protein_coding
description:
  tRNA:m(5)U-54 methyltransferase; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily.


ensembl_gene_id: Theco_2113
symbol: topA
gene_biotype: protein_coding
description:
  DNA topoisomerase I, bacterial; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removi [...]


ensembl_gene_id: Theco_2115
symbol: sucD
gene_biotype: protein_coding
description:
  succinyl-CoA synthetase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.


ensembl_gene_id: Theco_2116
symbol: sucC
gene_biotype: protein_coding
description:
  succinyl-CoA synthetase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.


ensembl_gene_id: Theco_2118
symbol: AGA58240.1
gene_biotype: protein_coding
description:
  Mg chelatase-related protein; PFAM: Magnesium chelatase, subunit ChlI; TIGRFAM: Mg chelatase-related protein.


ensembl_gene_id: Theco_2119
symbol: AGA58241.1
gene_biotype: protein_coding
description:
  PFAM: Uncharacterised protein family UPF0102; TIGRFAM: TIGR00252 family protein; Belongs to the UPF0102 family.


ensembl_gene_id: Theco_2120
symbol: AGA58242.1
gene_biotype: protein_coding
description:
  Uncharacterized protein, cytoplasmic domain of flagellar protein FhlB like protein; PFAM: FlhB HrpN YscU SpaS Family; TIGRFAM: flhB C-terminus-related protein.


ensembl_gene_id: Theco_2123
symbol: AGA58245.1
gene_biotype: protein_coding
description:
  Ribosome biogenesis GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.


ensembl_gene_id: Theco_2124
symbol: AGA58246.1
gene_biotype: protein_coding
description:
  PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type; Belongs to the peptidase S26 family.


ensembl_gene_id: Theco_2125
symbol: rplS
gene_biotype: protein_coding
description:
  Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.


ensembl_gene_id: Theco_2126
symbol: trmD
gene_biotype: protein_coding
description:
  tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.


ensembl_gene_id: Theco_2127
symbol: rimM
gene_biotype: protein_coding
description:
  16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.


ensembl_gene_id: Theco_2129
symbol: rpsP
gene_biotype: protein_coding
description:
  PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.


ensembl_gene_id: Theco_2130
symbol: ffh
gene_biotype: protein_coding
description:
  Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.


ensembl_gene_id: Theco_2131
symbol: AGA58253.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.


ensembl_gene_id: Theco_2132
symbol: ftsY
gene_biotype: protein_coding
description:
  Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).


ensembl_gene_id: Theco_2133
symbol: smc
gene_biotype: protein_coding
description:
  Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.


ensembl_gene_id: Theco_2134
symbol: rnc
gene_biotype: protein_coding
description:
  Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.


ensembl_gene_id: Theco_2135
symbol: AGA58257.1
gene_biotype: protein_coding
description:
  Beta-ketoacyl-acyl-carrier-protein synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.


ensembl_gene_id: Theco_2137
symbol: AGA58259.1
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Theco_2140
symbol: plsX
gene_biotype: protein_coding
description:
  Fatty acid/phospholipid synthesis protein PlsX; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.


ensembl_gene_id: Theco_2141
symbol: fapR
gene_biotype: protein_coding
description:
  Uncharacterized protein, possibly involved in aromatic compounds catabolism; Transcriptional factor involved in regulation of membrane lipid biosynthesis by repressing genes involved in fatty acid and phospholipid metabolism.


ensembl_gene_id: Theco_2142
symbol: rpmF
gene_biotype: protein_coding
description:
  PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.


ensembl_gene_id: Theco_2143
symbol: AGA58265.1
gene_biotype: protein_coding
description:
  Putative metal-binding protein, possibly nucleic-acid binding protein; PFAM: Uncharacterized ACR, COG1399.


ensembl_gene_id: Theco_2144
symbol: tmcAL
gene_biotype: protein_coding
description:
  Putative nucleotidyltransferase; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of elongator tRNA(Met), using acetate and ATP as substrates. First activates an acetate ion to form acetyladenylate (Ac- AMP) and then transfers the acetyl group to tRNA to form ac(4)C34.


ensembl_gene_id: Theco_2145
symbol: AGA58267.1
gene_biotype: protein_coding
description:
  Putative secreted protein containing a PDZ domain; PFAM: Lon protease (S16) C-terminal proteolytic domain.


ensembl_gene_id: Theco_2147
symbol: coaD
gene_biotype: protein_coding
description:
  Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.


ensembl_gene_id: Theco_2148
symbol: AGA58270.1
gene_biotype: protein_coding
description:
  RNA methyltransferase, RsmD family; PFAM: Conserved hypothetical protein 95; TIGRFAM: RNA methyltransferase, RsmD family.


ensembl_gene_id: Theco_2156
symbol: AGA58277.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Domain of unknown function DUF77; TIGRFAM: uncharacterized protein, MTH1187 family.


ensembl_gene_id: Theco_2160
symbol: AGA58281.1
gene_biotype: protein_coding
description:
  Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.


ensembl_gene_id: Theco_2169
symbol: recG
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.


ensembl_gene_id: Theco_2173
symbol: rpmB
gene_biotype: protein_coding
description:
  PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.


ensembl_gene_id: Theco_2178
symbol: AGA58298.1
gene_biotype: protein_coding
description:
  PFAM: Ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.


ensembl_gene_id: Theco_2179
symbol: rsgA
gene_biotype: protein_coding
description:
  Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.


ensembl_gene_id: Theco_2182
symbol: rlmN
gene_biotype: protein_coding
description:
  23S rRNA m2A2503 methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.


ensembl_gene_id: Theco_2183
symbol: AGA58303.1
gene_biotype: protein_coding
description:
  Ribosomal RNA small subunit methyltransferase RsmB; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.


ensembl_gene_id: Theco_2184
symbol: fmt
gene_biotype: protein_coding
description:
  methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.


ensembl_gene_id: Theco_2186
symbol: priA
gene_biotype: protein_coding
description:
  Primosomal protein N'; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.


ensembl_gene_id: Theco_2187
symbol: AGA58307.1
gene_biotype: protein_coding
description:
  Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.


ensembl_gene_id: Theco_2188
symbol: rpoZ
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.


ensembl_gene_id: Theco_2191
symbol: AGA58311.1
gene_biotype: protein_coding
description:
  Cobalamin-dependent methionine synthase I; PFAM: Methylenetetrahydrofolate reductase; Homocysteine S-methyltransferase.


ensembl_gene_id: Theco_2192
symbol: dapF
gene_biotype: protein_coding
description:
  Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.


ensembl_gene_id: Theco_2193
symbol: AGA58313.1
gene_biotype: protein_coding
description:
  Sarco/endoplasmic reticulum calcium-translocating P-type ATPase; PFAM: E1-E2 ATPase; Cation transporting ATPase, C-terminus; Cation transporter/ATPase, N-terminus; haloacid dehalogenase-like hydrolase; TIGRFAM: plasma-membrane calcium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; potassium and/or sodium efflux P-type ATPase, fungal-type; sarco/endoplasmic reticulum calcium-translocating P-type ATPase.


ensembl_gene_id: Theco_2194
symbol: AGA58314.1
gene_biotype: protein_coding
description:
  Putative RNA-binding protein, snRNP like protein; PFAM: Domain of unknown function (DUF814); Fibronectin-binding protein A N-terminus (FbpA).


ensembl_gene_id: Theco_2201
symbol: AGA58321.1
gene_biotype: protein_coding
description:
  DNA/RNA helicase, superfamily II; PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit.


ensembl_gene_id: Theco_2206
symbol: AGA58326.1
gene_biotype: protein_coding
description:
  PFAM: Cell cycle protein; TIGRFAM: rod shape-determining protein RodA; cell division protein FtsW; Belongs to the SEDS family.


ensembl_gene_id: Theco_2213
symbol: rpsD
gene_biotype: protein_coding
description:
  Ribosomal protein S4, bacterial/organelle type; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.


ensembl_gene_id: Theco_2214
symbol: tyrS
gene_biotype: protein_coding
description:
  tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily.


ensembl_gene_id: Theco_2215
symbol: AGA58335.1
gene_biotype: protein_coding
description:
  Membrane carboxypeptidase (penicillin-binding protein); PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase.


ensembl_gene_id: Theco_2216
symbol: AGA58336.1
gene_biotype: protein_coding
description:
  acyl-CoA synthetase/AMP-acid ligase; PFAM: Domain of unknown function (DUF3448); AMP-binding enzyme.


ensembl_gene_id: Theco_2220
symbol: AGA58338.1
gene_biotype: protein_coding
description:
  5''-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily.


ensembl_gene_id: Theco_2221
symbol: AGA58339.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial regulatory proteins, lacI family; family; TIGRFAM: catabolite control protein A; manually curated.


ensembl_gene_id: Theco_2224
symbol: AGA58342.1
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate-protein phosphotransferase; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).


ensembl_gene_id: Theco_2225
symbol: AGA58343.1
gene_biotype: protein_coding
description:
  PTS system, glucose subfamily, IIA component; PFAM: Phosphotransferase system, EIIC; phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; phosphotransferase system, EIIB; TIGRFAM: PTS system, glucose-like IIB component; PTS system, glucose subfamily, IIA component.


ensembl_gene_id: Theco_2228
symbol: aroA
gene_biotype: protein_coding
description:
  3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.


ensembl_gene_id: Theco_2229
symbol: crcB
gene_biotype: protein_coding
description:
  Integral membrane protein possibly involved in chromosome condensation; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.


ensembl_gene_id: Theco_2231
symbol: aroK
gene_biotype: protein_coding
description:
  Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.


ensembl_gene_id: Theco_2233
symbol: AGA58351.1
gene_biotype: protein_coding
description:
  6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.


ensembl_gene_id: Theco_2234
symbol: AGA58352.1
gene_biotype: protein_coding
description:
  PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: gluconate kinase, FGGY type.


ensembl_gene_id: Theco_2242
symbol: AGA58360.1
gene_biotype: protein_coding
description:
  Metal-dependent hydrolase, beta-lactamase superfamily III; PFAM: Metallo-beta-lactamase superfamily.


ensembl_gene_id: Theco_2287
symbol: pyrE
gene_biotype: protein_coding
description:
  Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).


ensembl_gene_id: Theco_2288
symbol: pyrF
gene_biotype: protein_coding
description:
  Orotidine 5''-phosphate decarboxylase, subfamily 1; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.


ensembl_gene_id: Theco_2289
symbol: carB
gene_biotype: protein_coding
description:
  Carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; MGS-like domain; Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: carbamoyl-phosphate synthase, large subunit; Belongs to the CarB family.


ensembl_gene_id: Theco_2290
symbol: carA
gene_biotype: protein_coding
description:
  PFAM: Carbamoyl-phosphate synthase small chain, CPSase domain; Glutamine amidotransferase class-I; TIGRFAM: carbamoyl-phosphate synthase, small subunit; Belongs to the CarA family.


ensembl_gene_id: Theco_2291
symbol: pyrC
gene_biotype: protein_coding
description:
  Dihydroorotase, multifunctional complex type; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.


ensembl_gene_id: Theco_2292
symbol: pyrB
gene_biotype: protein_coding
description:
  PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.


ensembl_gene_id: Theco_2293
symbol: pyrR
gene_biotype: protein_coding
description:
  Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant; Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrR subfamily.


ensembl_gene_id: Theco_2294
symbol: AGA58405.1
gene_biotype: protein_coding
description:
  LL-diaminopimelate aminotransferase; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate; Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. LL-diaminopimelate aminotransferase subfamily.


ensembl_gene_id: Theco_2296
symbol: lspA
gene_biotype: protein_coding
description:
  Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.


ensembl_gene_id: Theco_2297
symbol: AGA58408.1
gene_biotype: protein_coding
description:
  Sporulation protein, yteA family; PFAM: Prokaryotic dksA/traR C4-type zinc finger; TIGRFAM: sporulation protein, yteA family.


ensembl_gene_id: Theco_2300
symbol: ileS
gene_biotype: protein_coding
description:
  isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily.


ensembl_gene_id: Theco_2304
symbol: sepF
gene_biotype: protein_coding
description:
  Hypothetical protein; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA.


ensembl_gene_id: Theco_2305
symbol: AGA58416.1
gene_biotype: protein_coding
description:
  Pyridoxal phosphate enzyme, YggS family; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.


ensembl_gene_id: Theco_2306
symbol: AGA58417.1
gene_biotype: protein_coding
description:
  Uncharacterized protein, YfiH family; PFAM: Multi-copper polyphenol oxidoreductase laccase; TIGRFAM: uncharacterized protein, YfiH family; Belongs to the multicopper oxidase YfiH/RL5 family.


ensembl_gene_id: Theco_2309
symbol: AGA58420.1
gene_biotype: protein_coding
description:
  RNA polymerase sigma-G factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: Theco_2310
symbol: AGA58421.1
gene_biotype: protein_coding
description:
  RNA polymerase sigma-E factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: Theco_2312
symbol: ftsZ
gene_biotype: protein_coding
description:
  Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.


ensembl_gene_id: Theco_2313
symbol: ftsA
gene_biotype: protein_coding
description:
  Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.


ensembl_gene_id: Theco_2315
symbol: murA
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.


ensembl_gene_id: Theco_2317
symbol: murG
gene_biotype: protein_coding
description:
  Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.


ensembl_gene_id: Theco_2318
symbol: AGA58429.1
gene_biotype: protein_coding
description:
  PFAM: Cell cycle protein; TIGRFAM: rod shape-determining protein RodA; stage V sporulation protein E; cell division protein FtsW; Belongs to the SEDS family.


ensembl_gene_id: Theco_2319
symbol: murD
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.


ensembl_gene_id: Theco_2320
symbol: mraY
gene_biotype: protein_coding
description:
  phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.


ensembl_gene_id: Theco_2321
symbol: murF
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.


ensembl_gene_id: Theco_2322
symbol: murE
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramyl-tripeptide synthetase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.


ensembl_gene_id: Theco_2323
symbol: AGA58434.1
gene_biotype: protein_coding
description:
  Stage V sporulation protein D; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; PASTA domain; TIGRFAM: stage V sporulation protein D.


ensembl_gene_id: Theco_2324
symbol: AGA58435.1
gene_biotype: protein_coding
description:
  Cell division protein FtsI/penicillin-binding protein 2; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; PASTA domain.


ensembl_gene_id: Theco_2326
symbol: rsmH
gene_biotype: protein_coding
description:
  S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.


ensembl_gene_id: Theco_2328
symbol: ahcY
gene_biotype: protein_coding
description:
  Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.


ensembl_gene_id: Theco_2329
symbol: bshC
gene_biotype: protein_coding
description:
  Bacillithiol biosynthesis cysteine-adding enzyme BshC; Involved in bacillithiol (BSH) biosynthesis. May catalyze the last step of the pathway, the addition of cysteine to glucosamine malate (GlcN-Mal) to generate BSH.


ensembl_gene_id: Theco_2331
symbol: AGA58442.1
gene_biotype: protein_coding
description:
  2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.


ensembl_gene_id: Theco_2339
symbol: AGA58450.1
gene_biotype: protein_coding
description:
  PFAM: Cell envelope-related transcriptional attenuator domain; TIGRFAM: cell envelope-related function transcriptional attenuator common domain.


ensembl_gene_id: Theco_2342
symbol: AGA58453.1
gene_biotype: protein_coding
description:
  GTP-binding protein TypA/BipA; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein TypA/BipA; small GTP-binding protein domain.


ensembl_gene_id: Theco_2346
symbol: thiI
gene_biotype: protein_coding
description:
  Thiazole biosynthesis/tRNA modification protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.


ensembl_gene_id: Theco_2354
symbol: AGA58464.1
gene_biotype: protein_coding
description:
  PFAM: NIF3 (NGG1p interacting factor 3); TIGRFAM: dinuclear metal center protein, YbgI/SA1388 family; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.


ensembl_gene_id: Theco_2357
symbol: sigA
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor, sigma-70 family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.


ensembl_gene_id: Theco_2358
symbol: dnaG
gene_biotype: protein_coding
description:
  DNA primase, catalytic core; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.


ensembl_gene_id: Theco_2359
symbol: AGA58469.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Uncharacterized BCR, YaiI/YqxD family COG1671; Belongs to the UPF0178 family.


ensembl_gene_id: Theco_2361
symbol: glyS
gene_biotype: protein_coding
description:
  PFAM: Glycyl-tRNA synthetase beta subunit; TIGRFAM: glycyl-tRNA synthetase, tetrameric type, beta subunit.


ensembl_gene_id: Theco_2362
symbol: glyQ
gene_biotype: protein_coding
description:
  PFAM: Glycyl-tRNA synthetase alpha subunit; TIGRFAM: glycyl-tRNA synthetase, tetrameric type, alpha subunit.


ensembl_gene_id: Theco_2365
symbol: era
gene_biotype: protein_coding
description:
  GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.


ensembl_gene_id: Theco_2366
symbol: AGA58476.1
gene_biotype: protein_coding
description:
  Cytidine deaminase, homotetrameric; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: Theco_2368
symbol: ybeY
gene_biotype: protein_coding
description:
  Metalloprotein, YbeY/UPF0054 family; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.


ensembl_gene_id: Theco_2369
symbol: AGA58479.1
gene_biotype: protein_coding
description:
  Putative domain HDIG-containing protein; PFAM: 7TM-HD extracellular; HD domain; 7TM receptor with intracellular HD hydrolase; TIGRFAM: uncharacterized domain HDIG.


ensembl_gene_id: Theco_2379
symbol: rpsU
gene_biotype: protein_coding
description:
  PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.


ensembl_gene_id: Theco_2381
symbol: AGA58489.1
gene_biotype: protein_coding
description:
  Protoporphyrinogen oxidase; PFAM: Flavin containing amine oxidoreductase; Bacterial regulatory proteins, tetR family.


ensembl_gene_id: Theco_2385
symbol: sbcD
gene_biotype: protein_coding
description:
  Exonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.


ensembl_gene_id: Theco_2387
symbol: addB
gene_biotype: protein_coding
description:
  Helicase-exonuclease AddAB, AddB subunit; ATP-dependent DNA helicase; Belongs to the helicase family. AddB/RexB type 1 subfamily.


ensembl_gene_id: Theco_2390
symbol: AGA58498.1
gene_biotype: protein_coding
description:
  Putative nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.


ensembl_gene_id: Theco_2394
symbol: deoC
gene_biotype: protein_coding
description:
  Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.


ensembl_gene_id: Theco_2396
symbol: AGA58504.1
gene_biotype: protein_coding
description:
  MiaB-like tRNA modifying enzyme; PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: MiaB-like tRNA modifying enzyme; radical SAM methylthiotransferase, MiaB/RimO family.


ensembl_gene_id: Theco_2397
symbol: AGA58505.1
gene_biotype: protein_coding
description:
  RNA methyltransferase, RsmE family; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.


ensembl_gene_id: Theco_2399
symbol: prmA
gene_biotype: protein_coding
description:
  Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.


ensembl_gene_id: Theco_2402
symbol: dnaJ
gene_biotype: protein_coding
description:
  Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]


ensembl_gene_id: Theco_2404
symbol: grpE
gene_biotype: protein_coding
description:
  Molecular chaperone GrpE (heat shock protein); Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle.  [...]


ensembl_gene_id: Theco_2405
symbol: hrcA
gene_biotype: protein_coding
description:
  Heat shock gene repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons.


ensembl_gene_id: Theco_2406
symbol: AGA58514.1
gene_biotype: protein_coding
description:
  Acetyltransferase, N-acetylglutamate synthase; PFAM: Acetyltransferase (GNAT) family; Belongs to the acetyltransferase family.


ensembl_gene_id: Theco_2408
symbol: AGA58516.1
gene_biotype: protein_coding
description:
  Putative oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: Theco_2409
symbol: lepA
gene_biotype: protein_coding
description:
  GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.


ensembl_gene_id: Theco_2412
symbol: gpr
gene_biotype: protein_coding
description:
  GPR endopeptidase; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.


ensembl_gene_id: Theco_2421
symbol: leuS
gene_biotype: protein_coding
description:
  PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; TIGRFAM: leucyl-tRNA synthetase, eubacterial and mitochondrial family; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: Theco_2425
symbol: rsfS
gene_biotype: protein_coding
description:
  Iojap-like ribosome-associated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.


ensembl_gene_id: Theco_2426
symbol: AGA58534.1
gene_biotype: protein_coding
description:
  PFAM: HD domain; TIGRFAM: putative HD superfamily hydrolase of NAD metabolism; uncharacterized domain HDIG.


ensembl_gene_id: Theco_2427
symbol: nadD
gene_biotype: protein_coding
description:
  Nicotinate/nicotinamide nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).


ensembl_gene_id: Theco_2429
symbol: aroE
gene_biotype: protein_coding
description:
  Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).


ensembl_gene_id: Theco_2431
symbol: AGA58539.1
gene_biotype: protein_coding
description:
  HAD phosphatase subfamily IIIA; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; HAD-superfamily hydrolase, subfamily IIIA; HAD superfamily (subfamily IIIA) phosphatase, TIGR01668.


ensembl_gene_id: Theco_2451
symbol: AGA58556.1
gene_biotype: protein_coding
description:
  PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family.


ensembl_gene_id: Theco_2453
symbol: AGA58558.1
gene_biotype: protein_coding
description:
  Periplasmic component of amino acid ABC-type transporter/signal transduction system; PFAM: Bacterial extracellular solute-binding proteins, family 3.


ensembl_gene_id: Theco_2456
symbol: AGA58561.1
gene_biotype: protein_coding
description:
  FMN reductase, SsuE family; PFAM: NADPH-dependent FMN reductase; TIGRFAM: FMN reductase, SsuE family.


ensembl_gene_id: Theco_2457
symbol: AGA58562.1
gene_biotype: protein_coding
description:
  PFAM: Luciferase-like monooxygenase; TIGRFAM: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family.


ensembl_gene_id: Theco_2458
symbol: AGA58563.1
gene_biotype: protein_coding
description:
  RNA polymerase sigma-K factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: Theco_2460
symbol: AGA58565.1
gene_biotype: protein_coding
description:
  Ribonucleotide reductase, beta subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family.


ensembl_gene_id: Theco_2461
symbol: AGA58566.1
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.


ensembl_gene_id: Theco_2462
symbol: AGA58567.1
gene_biotype: protein_coding
description:
  PFAM: NrdI Flavodoxin like; TIGRFAM: ribonucleoside-diphosphate reductase 2, operon protein nrdI; Belongs to the NrdI family.


ensembl_gene_id: Theco_2464
symbol: metE
gene_biotype: protein_coding
description:
  5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.


ensembl_gene_id: Theco_2466
symbol: AGA58571.1
gene_biotype: protein_coding
description:
  2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase; PFAM: Domain of unknown function (DUF2437); Fumarylacetoacetate (FAA) hydrolase family.


ensembl_gene_id: Theco_2471
symbol: ureD
gene_biotype: protein_coding
description:
  Urease accessory protein UreH; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.


ensembl_gene_id: Theco_2472
symbol: ureG
gene_biotype: protein_coding
description:
  Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.


ensembl_gene_id: Theco_2473
symbol: ureF
gene_biotype: protein_coding
description:
  Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.


ensembl_gene_id: Theco_2475
symbol: ureA
gene_biotype: protein_coding
description:
  PFAM: Urease, gamma subunit; TIGRFAM: urease, gamma subunit; Belongs to the urease gamma subunit family.


ensembl_gene_id: Theco_2479
symbol: AGA58583.1
gene_biotype: protein_coding
description:
  Putative permease; PFAM: Domain of unknown function DUF20; TIGRFAM: sporulation integral membrane protein YtvI.


ensembl_gene_id: Theco_2484
symbol: mltG
gene_biotype: protein_coding
description:
  Hypothetical protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.


ensembl_gene_id: Theco_2487
symbol: AGA58591.1
gene_biotype: protein_coding
description:
  RNAse H-fold protein YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.


ensembl_gene_id: Theco_2489
symbol: alaS
gene_biotype: protein_coding
description:
  alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.


ensembl_gene_id: Theco_2495
symbol: mnmA
gene_biotype: protein_coding
description:
  tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.


ensembl_gene_id: Theco_2496
symbol: AGA58600.1
gene_biotype: protein_coding
description:
  CBS domain-containing protein; PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain.


ensembl_gene_id: Theco_2497
symbol: AGA58601.1
gene_biotype: protein_coding
description:
  PFAM: MgsA AAA+ ATPase C terminal; ATPase family associated with various cellular activities (AAA); Rad17 cell cycle checkpoint protein.


ensembl_gene_id: Theco_2499
symbol: AGA58603.1
gene_biotype: protein_coding
description:
  Dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis; PFAM: ThiF family.


ensembl_gene_id: Theco_2500
symbol: aspS
gene_biotype: protein_coding
description:
  aspartyl-tRNA synthetase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.


ensembl_gene_id: Theco_2501
symbol: hisS
gene_biotype: protein_coding
description:
  PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: histidyl-tRNA synthetase.


ensembl_gene_id: Theco_2504
symbol: dtd
gene_biotype: protein_coding
description:
  D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family.


ensembl_gene_id: Theco_2505
symbol: AGA58609.1
gene_biotype: protein_coding
description:
  (p)ppGpp synthetase, RelA/SpoT family; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.


ensembl_gene_id: Theco_2506
symbol: apt
gene_biotype: protein_coding
description:
  Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.


ensembl_gene_id: Theco_2507
symbol: AGA58611.1
gene_biotype: protein_coding
description:
  single-stranded-DNA-specific exonuclease RecJ; PFAM: DHHA1 domain; DHH family; Single-strand DNA-specific exonuclease, C terminal domain; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ.


ensembl_gene_id: Theco_2515
symbol: tgt
gene_biotype: protein_coding
description:
  tRNA-guanine transglycosylase, queuosine-34-forming; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of  [...]


ensembl_gene_id: Theco_2516
symbol: queA
gene_biotype: protein_coding
description:
  S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).


ensembl_gene_id: Theco_2519
symbol: ruvB
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase, RuvB subunit; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.


ensembl_gene_id: Theco_2520
symbol: ruvA
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase, RuvA subunit; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.


ensembl_gene_id: Theco_2521
symbol: ruvC
gene_biotype: protein_coding
description:
  Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.


ensembl_gene_id: Theco_2528
symbol: ilvE
gene_biotype: protein_coding
description:
  Branched-chain amino acid aminotransferase, group I; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Theco_2530
symbol: thrB
gene_biotype: protein_coding
description:
  Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.


ensembl_gene_id: Theco_2533
symbol: obg
gene_biotype: protein_coding
description:
  Obg family GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.


ensembl_gene_id: Theco_2535
symbol: rpmA
gene_biotype: protein_coding
description:
  PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.


ensembl_gene_id: Theco_2537
symbol: rplU
gene_biotype: protein_coding
description:
  Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.


ensembl_gene_id: Theco_2538
symbol: AGA58639.1
gene_biotype: protein_coding
description:
  Ribonuclease, Rne/Rng family; PFAM: Ribonuclease E/G family; S1 RNA binding domain; TIGRFAM: ribonuclease, Rne/Rng family.


ensembl_gene_id: Theco_2542
symbol: AGA58643.1
gene_biotype: protein_coding
description:
  Bacterial cell division membrane protein; PFAM: Cell cycle protein; TIGRFAM: rod shape-determining protein RodA; Belongs to the SEDS family.


ensembl_gene_id: Theco_2544
symbol: minC
gene_biotype: protein_coding
description:
  Septum formation inhibitor; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family.


ensembl_gene_id: Theco_2548
symbol: AGA58649.1
gene_biotype: protein_coding
description:
  DNA repair protein radc; PFAM: Protein of unknown function (DUF2466); TIGRFAM: DNA repair protein radc; Belongs to the UPF0758 family.


ensembl_gene_id: Theco_2559
symbol: AGA58657.1
gene_biotype: protein_coding
description:
  MAF protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.


ensembl_gene_id: Theco_2564
symbol: AGA58662.1
gene_biotype: protein_coding
description:
  Folylpolyglutamate synthase/dihydrofolate synthase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase; Belongs to the folylpolyglutamate synthase family.


ensembl_gene_id: Theco_2565
symbol: valS
gene_biotype: protein_coding
description:
  valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.


ensembl_gene_id: Theco_2568
symbol: hemL
gene_biotype: protein_coding
description:
  Glutamate-1-semialdehyde-2,1-aminomutase; PFAM: Aminotransferase class-III; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; manually curated.


ensembl_gene_id: Theco_2571
symbol: AGA58668.1
gene_biotype: protein_coding
description:
  uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; Uroporphyrinogen-III synthase HemD; TIGRFAM: uroporphyrin-III C-methyltransferase.


ensembl_gene_id: Theco_2572
symbol: hemC
gene_biotype: protein_coding
description:
  Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.


ensembl_gene_id: Theco_2575
symbol: hemA
gene_biotype: protein_coding
description:
  glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).


ensembl_gene_id: Theco_2576
symbol: speH
gene_biotype: protein_coding
description:
  S-adenosylmethionine decarboxylase proenzyme; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine; Belongs to the prokaryotic AdoMetDC family. Type 1 subfamily.


ensembl_gene_id: Theco_2578
symbol: engB
gene_biotype: protein_coding
description:
  Ribosome biogenesis GTP-binding protein YsxC/EngB; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.


ensembl_gene_id: Theco_2579
symbol: lon
gene_biotype: protein_coding
description:
  ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.


ensembl_gene_id: Theco_2580
symbol: AGA58677.1
gene_biotype: protein_coding
description:
  ATP-dependent protease LonB; PFAM: ATPase family associated with various cellular activities (AAA); Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: ATP-dependent protease LonB.


ensembl_gene_id: Theco_2581
symbol: ispG
gene_biotype: protein_coding
description:
  1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.


ensembl_gene_id: Theco_2582
symbol: clpX
gene_biotype: protein_coding
description:
  Endopeptidase Clp ATP-binding regulatory subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.


ensembl_gene_id: Theco_2583
symbol: clpP-2
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.


ensembl_gene_id: Theco_2584
symbol: tig
gene_biotype: protein_coding
description:
  Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.


ensembl_gene_id: Theco_2591
symbol: AGA58687.1
gene_biotype: protein_coding
description:
  Transcriptional activator of acetoin/glycerol metabolism; PFAM: Bacterial regulatory proteins, luxR family.


ensembl_gene_id: Theco_2594
symbol: AGA58688.1
gene_biotype: protein_coding
description:
  Putative ABC-type sugar transport system, permease component; PFAM: Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Theco_2595
symbol: rbsA
gene_biotype: protein_coding
description:
  ABC-type sugar transport system, ATPase component; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.


ensembl_gene_id: Theco_2604
symbol: AGA58698.1
gene_biotype: protein_coding
description:
  Asparagine synthase, glutamine-hydrolyzing; PFAM: Asparagine synthase; Glutamine amidotransferases class-II; TIGRFAM: asparagine synthase (glutamine-hydrolyzing).


ensembl_gene_id: Theco_2605
symbol: AGA58699.1
gene_biotype: protein_coding
description:
  Xanthosine triphosphate pyrophosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.


ensembl_gene_id: Theco_2606
symbol: rph
gene_biotype: protein_coding
description:
  Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.


ensembl_gene_id: Theco_2612
symbol: mdh
gene_biotype: protein_coding
description:
  Malate dehydrogenase, NAD-dependent; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.


ensembl_gene_id: Theco_2613
symbol: AGA58707.1
gene_biotype: protein_coding
description:
  PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent, prokaryotic type.


ensembl_gene_id: Theco_2614
symbol: AGA58708.1
gene_biotype: protein_coding
description:
  PFAM: Citrate synthase; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; Belongs to the citrate synthase family.


ensembl_gene_id: Theco_2616
symbol: AGA58710.1
gene_biotype: protein_coding
description:
  PFAM: Pyruvate kinase, barrel domain; PEP-utilising enzyme, mobile domain; Pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase; Belongs to the pyruvate kinase family.


ensembl_gene_id: Theco_2617
symbol: accA
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.


ensembl_gene_id: Theco_2618
symbol: accD
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.


ensembl_gene_id: Theco_2621
symbol: AGA58715.1
gene_biotype: protein_coding
description:
  PFAM: PHP domain; Bacterial DNA polymerase III alpha subunit; TIGRFAM: DNA-directed DNA polymerase III (polc).


ensembl_gene_id: Theco_2626
symbol: AGA58720.1
gene_biotype: protein_coding
description:
  Putative transcriptional regulator containing CBS domains; PFAM: DRTGG domain; Thioesterase superfamily; CBS domain; Bacterial regulatory proteins, gntR family.


ensembl_gene_id: Theco_2645
symbol: AGA58738.1
gene_biotype: protein_coding
description:
  5'-nucleotidase/2',3'-cyclic phosphodiesterase-like hydrolase; PFAM: 5'-nucleotidase, C-terminal domain; Bacterial capsule synthesis protein PGA_cap; Belongs to the 5'-nucleotidase family.


ensembl_gene_id: Theco_2646
symbol: moaA
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.


ensembl_gene_id: Theco_2650
symbol: AGA58743.1
gene_biotype: protein_coding
description:
  Cell wall-associated hydrolase, invasion-associated protein; PFAM: NlpC/P60 family; Copper amine oxidase N-terminal domain.


ensembl_gene_id: Theco_2662
symbol: AGA58753.1
gene_biotype: protein_coding
description:
  FeS assembly protein SufB; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufB.


ensembl_gene_id: Theco_2664
symbol: AGA58755.1
gene_biotype: protein_coding
description:
  Cysteine desulfurase-like protein, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.


ensembl_gene_id: Theco_2665
symbol: AGA58756.1
gene_biotype: protein_coding
description:
  FeS assembly protein SufD; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufD.


ensembl_gene_id: Theco_2670
symbol: mtnK
gene_biotype: protein_coding
description:
  5-methylthioribose kinase; Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate.


ensembl_gene_id: Theco_2671
symbol: mtnA
gene_biotype: protein_coding
description:
  S-methyl-5-thioribose-1-phosphate isomerase; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).


ensembl_gene_id: Theco_2674
symbol: AGA58764.1
gene_biotype: protein_coding
description:
  PFAM: EAL domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain.


ensembl_gene_id: Theco_2677
symbol: AGA58767.1
gene_biotype: protein_coding
description:
  Sporulation protein YhbH; PFAM: Protein of unknown function (DUF444); TIGRFAM: sporulation protein YhbH; Belongs to the UPF0229 family.


ensembl_gene_id: Theco_2683
symbol: AGA58773.1
gene_biotype: protein_coding
description:
  Threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine.


ensembl_gene_id: Theco_2688
symbol: AGA58778.1
gene_biotype: protein_coding
description:
  rRNA methylase, putative, group 2; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.


ensembl_gene_id: Theco_2690
symbol: serC
gene_biotype: protein_coding
description:
  Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.


ensembl_gene_id: Theco_2691
symbol: AGA58781.1
gene_biotype: protein_coding
description:
  2''-5'' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.


ensembl_gene_id: Theco_2697
symbol: ispH
gene_biotype: protein_coding
description:
  (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.


ensembl_gene_id: Theco_2698
symbol: AGA58788.1
gene_biotype: protein_coding
description:
  Histidine kinase,HAMP domain-containing protein,histidine kinase; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.


ensembl_gene_id: Theco_2708
symbol: thrS
gene_biotype: protein_coding
description:
  threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).


ensembl_gene_id: Theco_2710
symbol: mqnC
gene_biotype: protein_coding
description:
  Menaquinone biosynthesis protein, SCO4550 family; Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2).


ensembl_gene_id: Theco_2711
symbol: AGA58801.1
gene_biotype: protein_coding
description:
  Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities; PFAM: Aminotransferase class I and II.


ensembl_gene_id: Theco_2712
symbol: AGA58802.1
gene_biotype: protein_coding
description:
  Cystathionine beta-lyase/cystathionine gamma-synthase; PFAM: Cys/Met metabolism PLP-dependent enzyme.


ensembl_gene_id: Theco_2713
symbol: metAA
gene_biotype: protein_coding
description:
  Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.


ensembl_gene_id: Theco_2715
symbol: corA
gene_biotype: protein_coding
description:
  Magnesium Mg(2+) and cobalt Co(2+) transport protein CorA; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family.


ensembl_gene_id: Theco_2718
symbol: AGA58808.1
gene_biotype: protein_coding
description:
  PFAM: PHP domain; TIGRFAM: histidinol phosphate phosphatase HisJ family; Belongs to the PHP hydrolase family. HisK subfamily.


ensembl_gene_id: Theco_2722
symbol: AGA58812.1
gene_biotype: protein_coding
description:
  PFAM: domain; FAD binding domain; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup.


ensembl_gene_id: Theco_2723
symbol: AGA58813.1
gene_biotype: protein_coding
description:
  PFAM: Succinate dehydrogenase/Fumarate reductase transmembrane subunit; TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family.


ensembl_gene_id: Theco_2730
symbol: uvrC
gene_biotype: protein_coding
description:
  Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.


ensembl_gene_id: Theco_2733
symbol: AGA58822.1
gene_biotype: protein_coding
description:
  Sulfate ABC transporter, ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Sulfate/tungstate importer (TC 3.A.1.6) family.


ensembl_gene_id: Theco_2734
symbol: AGA58823.1
gene_biotype: protein_coding
description:
  Sulfate ABC transporter, permease protein CysW; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: sulfate ABC transporter, permease protein CysW; sulfate ABC transporter, permease protein.


ensembl_gene_id: Theco_2735
symbol: AGA58824.1
gene_biotype: protein_coding
description:
  Sulfate ABC transporter, permease protein CysT; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import.


ensembl_gene_id: Theco_2756
symbol: AGA58845.1
gene_biotype: protein_coding
description:
  Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily.


ensembl_gene_id: Theco_2759
symbol: AGA58848.1
gene_biotype: protein_coding
description:
  Theronine dehydrogenase-like Zn-dependent dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.


ensembl_gene_id: Theco_2760
symbol: AGA58849.1
gene_biotype: protein_coding
description:
  Transcriptional antiterminator; PFAM: Mga helix-turn-helix domain; PRD domain; Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2.


ensembl_gene_id: Theco_2761
symbol: AGA58850.1
gene_biotype: protein_coding
description:
  Phosphotransferase system, mannitol-specific IIBC component; PFAM: Phosphotransferase system, EIIC; PTS system, Lactose/Cellobiose specific IIB subunit.


ensembl_gene_id: Theco_2770
symbol: AGA58859.1
gene_biotype: protein_coding
description:
  PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; manually curated.


ensembl_gene_id: Theco_2774
symbol: AGA58863.1
gene_biotype: protein_coding
description:
  DNA-binding domain-containing protein, AraC-type; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family.


ensembl_gene_id: Theco_2777
symbol: AGA58866.1
gene_biotype: protein_coding
description:
  Alpha-glucuronidase; PFAM: Glycosyl hydrolase family 67 C-terminus; Glycosyl hydrolase family 67 middle domain; Glycosyl hydrolase family 67 N-terminus; Belongs to the glycosyl hydrolase 67 family.


ensembl_gene_id: Theco_2801
symbol: AGA58888.1
gene_biotype: protein_coding
description:
  PFAM: Nucleotidyltransferase substrate binding protein like; TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family.


ensembl_gene_id: Theco_2810
symbol: AGA58896.1
gene_biotype: protein_coding
description:
  DNA/RNA helicase, superfamily II; PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit; Domain of unknown function (DUF3427).


ensembl_gene_id: Theco_2869
symbol: AGA58953.1
gene_biotype: protein_coding
description:
  PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, TIGR02957 family.


ensembl_gene_id: Theco_2870
symbol: AGA58954.1
gene_biotype: protein_coding
description:
  Phytoene dehydrogenase-like oxidoreductase; PFAM: Flavin containing amine oxidoreductase; manually curated.


ensembl_gene_id: Theco_2884
symbol: AGA58968.1
gene_biotype: protein_coding
description:
  Histidine kinase,GAF domain-containing protein; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain.


ensembl_gene_id: Theco_2885
symbol: AGA58969.1
gene_biotype: protein_coding
description:
  Copper/silver-translocating P-type ATPase; PFAM: E1-E2 ATPase; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC.


ensembl_gene_id: Theco_2890
symbol: AGA58974.1
gene_biotype: protein_coding
description:
  Cysteine export CydDC family ABC transporter permease subunit/ATP-binding protein CydD; PFAM: ABC transporter; ABC transporter transmembrane region; TIGRFAM: thiol reductant ABC exporter, CydD subunit.


ensembl_gene_id: Theco_2912
symbol: AGA58979.1
gene_biotype: protein_coding
description:
  Putative glycosyl hydrolase; PFAM: Copper amine oxidase N-terminal domain; Glycosyl hydrolases family 18; Bacterial SH3 domain.


ensembl_gene_id: Theco_2913
symbol: AGA58980.1
gene_biotype: protein_coding
description:
  Fe2+/Zn2+ uptake regulation protein; PFAM: Ferric uptake regulator family; manually curated; Belongs to the Fur family.


ensembl_gene_id: Theco_2915
symbol: gatB
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.


ensembl_gene_id: Theco_2916
symbol: gatA
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).


ensembl_gene_id: Theco_2917
symbol: gatC
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.


ensembl_gene_id: Theco_2929
symbol: AGA58996.1
gene_biotype: protein_coding
description:
  Putative transcriptional regulator with CopG/Arc/MetJ DNA-binding domain and metal-binding domain; PFAM: Ribbon-helix-helix protein, copG family.


ensembl_gene_id: Theco_2932
symbol: AGA58999.1
gene_biotype: protein_coding
description:
  Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.


ensembl_gene_id: Theco_2938
symbol: AGA59004.1
gene_biotype: protein_coding
description:
  Site-specific recombinase XerD; PFAM: Phage integrase family; Belongs to the 'phage' integrase family.


ensembl_gene_id: Theco_2959
symbol: AGA59023.1
gene_biotype: protein_coding
description:
  Beta-glucosidase/6-phospho-beta- glucosidase/beta-galactosidase; PFAM: Glycosyl hydrolase family 1; Belongs to the glycosyl hydrolase 1 family.


ensembl_gene_id: Theco_2966
symbol: AGA59029.1
gene_biotype: protein_coding
description:
  Transcriptional regulator; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family; TIGRFAM: ModE molybdate transport repressor domain; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: Theco_2968
symbol: AGA59031.1
gene_biotype: protein_coding
description:
  NAD(P)H-dependent nitrite reductase, large subunit; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Nitrite and sulphite reductase 4Fe-4S domain; BFD-like [2Fe-2S] binding domain; Nitrite/Sulfite reductase ferredoxin-like half domain; TIGRFAM: nitrite reductase [NAD(P)H], large subunit.


ensembl_gene_id: Theco_2969
symbol: AGA59032.1
gene_biotype: protein_coding
description:
  uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: uroporphyrin-III C-methyltransferase.


ensembl_gene_id: Theco_2972
symbol: AGA59035.1
gene_biotype: protein_coding
description:
  Pullulanase, type I; PFAM: Bacterial Ig-like domain (group 2); S-layer homology domain; Alpha amylase, catalytic domain; Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Bacterial pullanase-associated domain; TIGRFAM: pullulanase, type I; Belongs to the glycosyl hydrolase 13 family.


ensembl_gene_id: Theco_2981
symbol: speE
gene_biotype: protein_coding
description:
  Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.


ensembl_gene_id: Theco_2986
symbol: nadE
gene_biotype: protein_coding
description:
  NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family.


ensembl_gene_id: Theco_3006
symbol: AGA59067.1
gene_biotype: protein_coding
description:
  2-isopropylmalate synthase, bacterial type; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate). Belongs to the alpha-IPM synthase/homocitrate synthase family.


ensembl_gene_id: Theco_3010
symbol: tsaD
gene_biotype: protein_coding
description:
  Putative glycoprotease GCP; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.


ensembl_gene_id: Theco_3017
symbol: ku
gene_biotype: protein_coding
description:
  Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.


ensembl_gene_id: Theco_3021
symbol: AGA59082.1
gene_biotype: protein_coding
description:
  Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase; PFAM: Phospholipase D Active site motif; Belongs to the phospholipase D family. Cardiolipin synthase subfamily.


ensembl_gene_id: Theco_3029
symbol: ddl
gene_biotype: protein_coding
description:
  D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.


ensembl_gene_id: Theco_3034
symbol: fdhD
gene_biotype: protein_coding
description:
  Formate dehydrogenase family accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.


ensembl_gene_id: Theco_3035
symbol: AGA59095.1
gene_biotype: protein_coding
description:
  Molybdopterin-dependent oxidoreductase alpha subunit; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: Theco_3038
symbol: AGA59098.1
gene_biotype: protein_coding
description:
  PFAM: Iron/manganese superoxide dismutases, alpha-hairpin domain; Iron/manganese superoxide dismutases, C-terminal domain.


ensembl_gene_id: Theco_3042
symbol: AGA59101.1
gene_biotype: protein_coding
description:
  Putative sugar phosphatase of HAD superfamily; Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro; Belongs to the HAD-like hydrolase superfamily. NagD family.


ensembl_gene_id: Theco_3051
symbol: AGA59110.1
gene_biotype: protein_coding
description:
  O-6-methylguanine DNA methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.


ensembl_gene_id: Theco_3052
symbol: queG
gene_biotype: protein_coding
description:
  Iron-sulfur cluster binding protein, putative; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family.


ensembl_gene_id: Theco_3058
symbol: AGA59117.1
gene_biotype: protein_coding
description:
  Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.


ensembl_gene_id: Theco_3060
symbol: lipA
gene_biotype: protein_coding
description:
  Lipoate synthase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.


ensembl_gene_id: Theco_3072
symbol: AGA59131.1
gene_biotype: protein_coding
description:
  Cation/multidrug efflux pump; PFAM: AcrB/AcrD/AcrF family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: Theco_3081
symbol: AGA59140.1
gene_biotype: protein_coding
description:
  Putative ABC-type transport system, periplasmic component/surface lipoprotein; PFAM: Basic membrane protein.


ensembl_gene_id: Theco_3083
symbol: AGA59142.1
gene_biotype: protein_coding
description:
  Phosphosulfolactate phosphohydrolase-like enzyme; PFAM: 2-phosphosulpholactate phosphatase; Belongs to the ComB family.


ensembl_gene_id: Theco_3087
symbol: AGA59145.1
gene_biotype: protein_coding
description:
  PFAM: SpoU rRNA Methylase family; RNA 2'-O ribose methyltransferase substrate binding; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: Theco_3090
symbol: purD
gene_biotype: protein_coding
description:
  Phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, N domain; Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, C domain; TIGRFAM: phosphoribosylamine--glycine ligase; Belongs to the GARS family.


ensembl_gene_id: Theco_3093
symbol: purN
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.


ensembl_gene_id: Theco_3094
symbol: purM
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylaminoimidazole synthetase.


ensembl_gene_id: Theco_3095
symbol: purF
gene_biotype: protein_coding
description:
  Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.


ensembl_gene_id: Theco_3096
symbol: purL
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase II; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist  [...]


ensembl_gene_id: Theco_3097
symbol: purQ
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase I; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist i [...]


ensembl_gene_id: Theco_3098
symbol: purS
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase, purS protein; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought [...]


ensembl_gene_id: Theco_3099
symbol: purC
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase; PFAM: SAICAR synthetase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase.


ensembl_gene_id: Theco_3100
symbol: AGA59158.1
gene_biotype: protein_coding
description:
  PFAM: Lyase; Adenylosuccinate lyase C-terminus; TIGRFAM: adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.


ensembl_gene_id: Theco_3101
symbol: purK
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, PurK protein; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).


ensembl_gene_id: Theco_3102
symbol: purE
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, PurE protein; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).


ensembl_gene_id: Theco_3113
symbol: AGA59169.1
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase specialized sigma subunit, sigma24; PFAM: Sigma-70 region 2; Belongs to the sigma-70 factor family.


ensembl_gene_id: Theco_3122
symbol: AGA59178.1
gene_biotype: protein_coding
description:
  PFAM: CRISPR-associated protein (Cas_Cas02710); TIGRFAM: CRISPR-associated protein, TIGR02710 family.


ensembl_gene_id: Theco_3129
symbol: cas2
gene_biotype: protein_coding
description:
  CRISPR-associated endoribonuclease Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.


ensembl_gene_id: Theco_3130
symbol: cas1
gene_biotype: protein_coding
description:
  CRISPR-associated endonuclease Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.


ensembl_gene_id: Theco_3131
symbol: AGA59187.1
gene_biotype: protein_coding
description:
  CRISPR-associated protein Cas4; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family.


ensembl_gene_id: Theco_3133
symbol: AGA59189.1
gene_biotype: protein_coding
description:
  PFAM: CRISPR-associated protein (Cas_Cas5); TIGRFAM: CRISPR-associated protein Cas5, subtype I-B/HMARI; CRISPR-associated protein Cas5, N-terminal domain.


ensembl_gene_id: Theco_3134
symbol: AGA59190.1
gene_biotype: protein_coding
description:
  PFAM: Family of unknown function (DUF694); TIGRFAM: CRISPR-associated protein, CT1132 family; CRISPR-associated protein Cas7/Csh2, subtype I-B/HMARI.


ensembl_gene_id: Theco_3136
symbol: AGA59192.1
gene_biotype: protein_coding
description:
  CRISPR-associated endoribonuclease Cas6; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA).


ensembl_gene_id: Theco_3153
symbol: hemL-2
gene_biotype: protein_coding
description:
  Glutamate-1-semialdehyde-2,1-aminomutase; PFAM: Aminotransferase class-III; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase.


ensembl_gene_id: Theco_3158
symbol: AGA59214.1
gene_biotype: protein_coding
description:
  PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II.


ensembl_gene_id: Theco_3160
symbol: AGA59216.1
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; PFAM: Glycosyltransferase family 28 C-terminal domain; Monogalactosyldiacylglycerol (MGDG) synthase.


ensembl_gene_id: Theco_3162
symbol: AGA59218.1
gene_biotype: protein_coding
description:
  Putative PLP-dependent enzyme possibly involved in cell wall biogenesis; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: Theco_3164
symbol: AGA59220.1
gene_biotype: protein_coding
description:
  Glycosyl transferase possibly involved in lipopolysaccharide synthesis; PFAM: Bacterial sugar transferase.


ensembl_gene_id: Theco_3166
symbol: AGA59222.1
gene_biotype: protein_coding
description:
  UDP-glucose 4-epimerase; PFAM: NAD dependent epimerase/dehydratase family; Belongs to the NAD(P)-dependent epimerase/dehydratase family.


ensembl_gene_id: Theco_3175
symbol: AGA59231.1
gene_biotype: protein_coding
description:
  Mannosyltransferase OCH1-like enzyme; PFAM: Glycosyltransferase sugar-binding region containing DXD motif.


ensembl_gene_id: Theco_3188
symbol: AGA59243.1
gene_biotype: protein_coding
description:
  Serine kinase of the HPr protein, regulates carbohydrate metabolism; PFAM: HPr Serine kinase C-terminal domain.


ensembl_gene_id: Theco_3197
symbol: AGA59252.1
gene_biotype: protein_coding
description:
  PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.


ensembl_gene_id: Theco_3207
symbol: AGA59262.1
gene_biotype: protein_coding
description:
  Putative beta-xylosidase; PFAM: Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.


ensembl_gene_id: Theco_3235
symbol: AGA59290.1
gene_biotype: protein_coding
description:
  PFAM: HD domain; DEAD/DEAH box helicase; TIGRFAM: CRISPR-associated helicase Cas3; CRISPR-associated endonuclease Cas3-HD.


ensembl_gene_id: Theco_3236
symbol: AGA59291.1
gene_biotype: protein_coding
description:
  PFAM: CRISPR-associated protein (Cas_Cas5); TIGRFAM: CRISPR-associated protein Cas5, subtype I-C/DVULG; CRISPR-associated protein Cas5, N-terminal domain.


ensembl_gene_id: Theco_3237
symbol: AGA59292.1
gene_biotype: protein_coding
description:
  PFAM: CRISPR-associated protein (Cas_Csd1); TIGRFAM: CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG.


ensembl_gene_id: Theco_3238
symbol: AGA59293.1
gene_biotype: protein_coding
description:
  CRISPR-associated protein Cas7/Csd2, subtype I-C/DVULG; PFAM: Family of unknown function (DUF694); TIGRFAM: CRISPR-associated protein, CT1132 family; CRISPR-associated protein Cas7/Csd2, subtype I-C/DVULG.


ensembl_gene_id: Theco_3240
symbol: AGA59295.1
gene_biotype: protein_coding
description:
  Haloacid dehalogenase superfamily enzyme, subfamily IA; Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro; Belongs to the HAD-like hydrolase superfamily. NagD family.


ensembl_gene_id: Theco_3246
symbol: AGA59301.1
gene_biotype: protein_coding
description:
  PFAM: Uncharacterised protein family UPF0047; TIGRFAM: secondary thiamine-phosphate synthase enzyme.


ensembl_gene_id: Theco_3250
symbol: AGA59305.1
gene_biotype: protein_coding
description:
  DNA-binding ferritin-like protein (oxidative damage protectant); PFAM: Ferritin-like domain; Belongs to the Dps family.


ensembl_gene_id: Theco_3251
symbol: AGA59306.1
gene_biotype: protein_coding
description:
  PAS domain S-box; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box.


ensembl_gene_id: Theco_3255
symbol: AGA59310.1
gene_biotype: protein_coding
description:
  Formate acetyltransferase 1; PFAM: Glycine radical; Pyruvate formate lyase; TIGRFAM: formate acetyltransferase 1.


ensembl_gene_id: Theco_3256
symbol: AGA59311.1
gene_biotype: protein_coding
description:
  Pyruvate formate-lyase 1-activating enzyme; Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine; Belongs to the organic radical-activating enzymes family.


ensembl_gene_id: Theco_3262
symbol: AGA59316.1
gene_biotype: protein_coding
description:
  Putative membrane protein involved in D-alanine export; PFAM: MBOAT family; Belongs to the membrane-bound acyltransferase family.


ensembl_gene_id: Theco_3276
symbol: AGA59329.1
gene_biotype: protein_coding
description:
  Putative secreted protein containing a PDZ domain; PFAM: PDZ domain (Also known as DHR or GLGF); Lon protease (S16) C-terminal proteolytic domain.


ensembl_gene_id: Theco_3283
symbol: AGA59335.1
gene_biotype: protein_coding
description:
  PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold.


ensembl_gene_id: Theco_3307
symbol: AGA59358.1
gene_biotype: protein_coding
description:
  PFAM: YCII-related domain; NAD binding domain of 6-phosphogluconate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase.


ensembl_gene_id: Theco_3309
symbol: AGA59360.1
gene_biotype: protein_coding
description:
  PFAM: EAL domain; GGDEF domain; family; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain.


ensembl_gene_id: Theco_3310
symbol: AGA59361.1
gene_biotype: protein_coding
description:
  DNA/RNA helicase, superfamily II, SNF2 family; PFAM: SNF2 Helicase protein; Helicase conserved C-terminal domain; SNF2 family N-terminal domain.


ensembl_gene_id: Theco_3325
symbol: AGA59376.1
gene_biotype: protein_coding
description:
  PFAM: Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase/PNT, N-terminal domain; TIGRFAM: alanine dehydrogenase; Belongs to the AlaDH/PNT family.


ensembl_gene_id: Theco_3331
symbol: AGA59382.1
gene_biotype: protein_coding
description:
  1,4-alpha-glucan branching enzyme; PFAM: Alpha amylase, C-terminal all-beta domain; Alpha amylase, catalytic domain.


ensembl_gene_id: Theco_3352
symbol: AGA59401.1
gene_biotype: protein_coding
description:
  ABC-type uncharacterized transport system, periplasmic component; PFAM: ABC transporter substrate binding protein.


ensembl_gene_id: Theco_3353
symbol: AGA59402.1
gene_biotype: protein_coding
description:
  Glycogen debranching enzyme; PFAM: Bacterial alpha-L-rhamnosidase; Alpha-L-rhamnosidase N-terminal domain; manually curated.


ensembl_gene_id: Theco_3356
symbol: AGA59404.1
gene_biotype: protein_coding
description:
  Glycogen debranching enzyme; PFAM: Bacterial alpha-L-rhamnosidase; Alpha-L-rhamnosidase N-terminal domain.


ensembl_gene_id: Theco_3368
symbol: AGA59416.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function C-terminus (DUF2399); Protein of unknown function N-terminus (DUF3323); TIGRFAM: TIGR02679 family protein.


ensembl_gene_id: Theco_3370
symbol: AGA59418.1
gene_biotype: protein_coding
description:
  TIGR02678 family protein; PFAM: Protein of unknown function (DUF2398); TIGRFAM: TIGR02678 family protein.


ensembl_gene_id: Theco_3371
symbol: AGA59419.1
gene_biotype: protein_coding
description:
  TIGR02677 family protein; PFAM: Protein of unknown function (DUF2397); TIGRFAM: TIGR02677 family protein.


ensembl_gene_id: Theco_3372
symbol: trpB-2
gene_biotype: protein_coding
description:
  Pyridoxal-phosphate dependent TrpB-like enzyme; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.


ensembl_gene_id: Theco_3375
symbol: AGA59423.1
gene_biotype: protein_coding
description:
  2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase; PFAM: Fumarylacetoacetate (FAA) hydrolase family.


ensembl_gene_id: Theco_3383
symbol: AGA59431.1
gene_biotype: protein_coding
description:
  Arabinogalactan endo-1,4-beta-galactosidase; PFAM: Glycosyl hydrolase family 53; S-layer homology domain; Bacterial Ig-like domain (group 4); Fibronectin type III domain.


ensembl_gene_id: Theco_3385
symbol: plsY-2
gene_biotype: protein_coding
description:
  Putative membrane protein; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.


ensembl_gene_id: Theco_3407
symbol: AGA59453.1
gene_biotype: protein_coding
description:
  Type I restriction-modification system methyltransferase subunit; PFAM: N-6 DNA Methylase; HsdM N-terminal domain.


ensembl_gene_id: Theco_3409
symbol: AGA59455.1
gene_biotype: protein_coding
description:
  Helicase, type I site-specific restriction-modification system restriction subunit; PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Helicase conserved C-terminal domain; Domain of unknown function (DUF3559); Type III restriction enzyme, res subunit.


ensembl_gene_id: Theco_3424
symbol: AGA59470.1
gene_biotype: protein_coding
description:
  Short-chain dehydrogenase, teichoic and lipoteichoic acid D-alanine esterification; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Theco_3427
symbol: AGA59473.1
gene_biotype: protein_coding
description:
  ABC-type polysaccharide/polyol phosphate export systems, permease component; PFAM: ABC-2 type transporter.


ensembl_gene_id: Theco_3468
symbol: AGA59509.1
gene_biotype: protein_coding
description:
  Arsenical-resistance protein; PFAM: Sodium Bile acid symporter family; TIGRFAM: arsenical-resistance protein.


ensembl_gene_id: Theco_3469
symbol: arsC
gene_biotype: protein_coding
description:
  Thioredoxin-dependent arsenate reductase; Catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)].


ensembl_gene_id: Theco_3470
symbol: AGA59511.1
gene_biotype: protein_coding
description:
  Kef-type K+ transport system, membrane component; PFAM: Sodium/hydrogen exchanger family; TIGRFAM: transporter, monovalent cation:proton antiporter-2 (CPA2) family.


ensembl_gene_id: Theco_3473
symbol: AGA59514.1
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase subunit 5 (chain L)/multisubunit Na+/H+ antiporter, MnhA subunit; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains.


ensembl_gene_id: Theco_3475
symbol: crcB-3
gene_biotype: protein_coding
description:
  crcB protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.


ensembl_gene_id: Theco_3478
symbol: smpB
gene_biotype: protein_coding
description:
  SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]


ensembl_gene_id: Theco_3479
symbol: rnr
gene_biotype: protein_coding
description:
  Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.


ensembl_gene_id: Theco_3480
symbol: AGA59520.1
gene_biotype: protein_coding
description:
  Protein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.


ensembl_gene_id: Theco_3483
symbol: eno
gene_biotype: protein_coding
description:
  Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.


ensembl_gene_id: Theco_3484
symbol: gpmI
gene_biotype: protein_coding
description:
  2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.


ensembl_gene_id: Theco_3485
symbol: tpiA
gene_biotype: protein_coding
description:
  Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.


ensembl_gene_id: Theco_3487
symbol: AGA59527.1
gene_biotype: protein_coding
description:
  PFAM: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.


ensembl_gene_id: Theco_3488
symbol: AGA59528.1
gene_biotype: protein_coding
description:
  Transcriptional regulator with sigma factor-related N-terminal domain; PFAM: Putative sugar-binding domain.


ensembl_gene_id: Theco_3495
symbol: AGA59534.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.


ensembl_gene_id: Theco_3502
symbol: prs
gene_biotype: protein_coding
description:
  Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.


ensembl_gene_id: Theco_3504
symbol: hisI
gene_biotype: protein_coding
description:
  PFAM: Phosphoribosyl-ATP pyrophosphohydrolase; Phosphoribosyl-AMP cyclohydrolase; TIGRFAM: phosphoribosyl-ATP pyrophosphohydrolase; In the N-terminal section; belongs to the PRA-CH family.


ensembl_gene_id: Theco_3505
symbol: hisF
gene_biotype: protein_coding
description:
  Imidazoleglycerol phosphate synthase, cyclase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.


ensembl_gene_id: Theco_3506
symbol: hisH
gene_biotype: protein_coding
description:
  Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.


ensembl_gene_id: Theco_3508
symbol: hisD
gene_biotype: protein_coding
description:
  Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.


ensembl_gene_id: Theco_3509
symbol: hisG
gene_biotype: protein_coding
description:
  ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Short subfamily.


ensembl_gene_id: Theco_3510
symbol: hisZ
gene_biotype: protein_coding
description:
  ATP phosphoribosyltransferase, regulatory subunit; Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine.


ensembl_gene_id: Theco_3512
symbol: AGA59551.1
gene_biotype: protein_coding
description:
  Acetyltransferase (isoleucine patch superfamily); PFAM: Bacterial transferase hexapeptide (three repeats).


ensembl_gene_id: Theco_3514
symbol: lgt
gene_biotype: protein_coding
description:
  Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.


ensembl_gene_id: Theco_3515
symbol: hprK
gene_biotype: protein_coding
description:
  Hpr(Ser) kinase/phosphatase; Catalyzes the ATP- as well as the pyrophosphate-dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK/P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P-Ser-HPr). The two antagonistic activities of HprK/P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable car [...]


ensembl_gene_id: Theco_3529
symbol: AGA59558.1
gene_biotype: protein_coding
description:
  PFAM: SigmaK-factor processing regulatory protein BofA; TIGRFAM: pro-sigmaK processing inhibitor BofA.


ensembl_gene_id: Theco_3531
symbol: recR
gene_biotype: protein_coding
description:
  Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.


ensembl_gene_id: Theco_3532
symbol: AGA59561.1
gene_biotype: protein_coding
description:
  DNA-binding protein, YbaB/EbfC family; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.


ensembl_gene_id: Theco_3533
symbol: dnaX
gene_biotype: protein_coding
description:
  DNA polymerase III, subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.


ensembl_gene_id: Theco_3538
symbol: rho
gene_biotype: protein_coding
description:
  Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.


ensembl_gene_id: Theco_3540
symbol: AGA59568.1
gene_biotype: protein_coding
description:
  PFAM: Fructose-bisphosphate aldolase class-II; TIGRFAM: ketose-bisphosphate aldolases; fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist.


ensembl_gene_id: Theco_3542
symbol: pyrG
gene_biotype: protein_coding
description:
  CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.


ensembl_gene_id: Theco_3544
symbol: rpoE
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, delta subunit; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family.


ensembl_gene_id: Theco_3546
symbol: argS
gene_biotype: protein_coding
description:
  arginyl-tRNA synthetase; PFAM: DALR anticodon binding domain; Arginyl tRNA synthetase N terminal domain; tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase.


ensembl_gene_id: Theco_3551
symbol: AGA59579.1
gene_biotype: protein_coding
description:
  glycine/D-amino acid oxidase, deaminating; PFAM: FAD dependent oxidoreductase; TIGRFAM: sarcosine oxidase, monomeric form.


ensembl_gene_id: Theco_3552
symbol: AGA59580.1
gene_biotype: protein_coding
description:
  PFAM: Integral membrane protein (intg_mem_TP0381); TIGRFAM: conserved hypothetical integral membrane protein TIGR02206.


ensembl_gene_id: Theco_3574
symbol: AGA59602.1
gene_biotype: protein_coding
description:
  5'-nucleotidase/2',3'-cyclic phosphodiesterase-like hydrolase; PFAM: Calcineurin-like phosphoesterase; 5'-nucleotidase, C-terminal domain; LysM domain; Belongs to the 5'-nucleotidase family.


ensembl_gene_id: Theco_3579
symbol: AGA59607.1
gene_biotype: protein_coding
description:
  Transcriptional regulator with HTH domain and aminotransferase domain; PFAM: Aminotransferase class I and II.


ensembl_gene_id: Theco_3580
symbol: AGA59608.1
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease III; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth).


ensembl_gene_id: Theco_3583
symbol: potA
gene_biotype: protein_coding
description:
  ABC-type spermidine/putrescine transport system, ATPase component; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.


ensembl_gene_id: Theco_3584
symbol: AGA59612.1
gene_biotype: protein_coding
description:
  ABC-type spermidine/putrescine transport system, permease component I; PFAM: Binding-protein-dependent transport system inner membrane component.


ensembl_gene_id: Theco_3585
symbol: AGA59613.1
gene_biotype: protein_coding
description:
  ABC-type spermidine/putrescine transport system, permease component II; PFAM: Binding-protein-dependent transport system inner membrane component.


ensembl_gene_id: Theco_3586
symbol: AGA59614.1
gene_biotype: protein_coding
description:
  Spermidine/putrescine-binding periplasmic protein; PFAM: Bacterial extracellular solute-binding protein.


ensembl_gene_id: Theco_3587
symbol: AGA59615.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Bacterial transcription activator, effector binding domain; Uncharacterized conserved protein (DUF2174).


ensembl_gene_id: Theco_3593
symbol: AGA59621.1
gene_biotype: protein_coding
description:
  Putative xylanase/chitin deacetylase; PFAM: Copper amine oxidase N-terminal domain; Polysaccharide deacetylase.


ensembl_gene_id: Theco_3605
symbol: tadA
gene_biotype: protein_coding
description:
  Cytosine/adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: Theco_3624
symbol: AGA59648.1
gene_biotype: protein_coding
description:
  DNA-methyltransferase Dcm; PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm); manually curated.


ensembl_gene_id: Theco_3626
symbol: AGA59650.1
gene_biotype: protein_coding
description:
  PFAM: Toprim domain; CHC2 zinc finger; D5 N terminal like; Poxvirus D5 protein-like; TIGRFAM: phage/plasmid primase, P4 family, C-terminal domain.


ensembl_gene_id: Theco_3628
symbol: AGA59651.1
gene_biotype: protein_coding
description:
  PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma factor, SigM family; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Theco_3633
symbol: AGA59656.1
gene_biotype: protein_coding
description:
  Dihydrodipicolinate synthase/N-acetylneuraminate lyase; PFAM: Dihydrodipicolinate synthetase family; TIGRFAM: dihydrodipicolinate synthase; Belongs to the DapA family.


ensembl_gene_id: Theco_3637
symbol: AGA59660.1
gene_biotype: protein_coding
description:
  Transglutaminase-like enzyme, predicted cysteine protease; PFAM: Transglutaminase-like superfamily; Bacterial transglutaminase-like N-terminal region.


ensembl_gene_id: Theco_3639
symbol: AGA59662.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Domain of unknown function (DUF404); Domain of unknown function (DUF407).


ensembl_gene_id: Theco_3651
symbol: serS
gene_biotype: protein_coding
description:
  seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).


ensembl_gene_id: Theco_3652
symbol: pdxT
gene_biotype: protein_coding
description:
  Pyridoxal 5''-phosphate synthase, glutaminase subunit Pdx2; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS.


ensembl_gene_id: Theco_3653
symbol: pdxS
gene_biotype: protein_coding
description:
  Pyridoxal 5''-phosphate synthase, synthase subunit Pdx1; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family.


ensembl_gene_id: Theco_3655
symbol: guaB
gene_biotype: protein_coding
description:
  Inosine-5''-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.


ensembl_gene_id: Theco_3657
symbol: lysS
gene_biotype: protein_coding
description:
  lysyl-tRNA synthetase (class II); PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial; Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: Theco_3659
symbol: AGA59680.1
gene_biotype: protein_coding
description:
  Putative TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.


ensembl_gene_id: Theco_3661
symbol: AGA59682.1
gene_biotype: protein_coding
description:
  PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase.


ensembl_gene_id: Theco_3662
symbol: AGA59683.1
gene_biotype: protein_coding
description:
  Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.


ensembl_gene_id: Theco_3663
symbol: AGA59684.1
gene_biotype: protein_coding
description:
  Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.


ensembl_gene_id: Theco_3664
symbol: AGA59685.1
gene_biotype: protein_coding
description:
  Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; PFAM: Aminotransferase class IV.


ensembl_gene_id: Theco_3665
symbol: AGA59686.1
gene_biotype: protein_coding
description:
  PFAM: Glutamine amidotransferase class-I; TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase.


ensembl_gene_id: Theco_3666
symbol: AGA59687.1
gene_biotype: protein_coding
description:
  PFAM: Anthranilate synthase component I, N terminal region; chorismate binding enzyme; TIGRFAM: aminodeoxychorismate synthase, component I, clade 2.


ensembl_gene_id: Theco_3675
symbol: AGA59695.1
gene_biotype: protein_coding
description:
  Cysteine synthase A; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: cysteine synthase A; cysteine synthases; Belongs to the cysteine synthase/cystathionine beta- synthase family.


ensembl_gene_id: Theco_3676
symbol: AGA59696.1
gene_biotype: protein_coding
description:
  Parvulin-like peptidyl-prolyl isomerase; PFAM: Bacterial trigger factor protein (TF) C-terminus; PPIC-type PPIASE domain.


ensembl_gene_id: Theco_3677
symbol: hslO
gene_biotype: protein_coding
description:
  Disulfide bond chaperone; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress.


ensembl_gene_id: Theco_3678
symbol: coaX
gene_biotype: protein_coding
description:
  Pantothenate kinase, type III; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.


ensembl_gene_id: Theco_3679
symbol: AGA59699.1
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal domain; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; Belongs to the NadC/ModD family.


ensembl_gene_id: Theco_3681
symbol: nadA
gene_biotype: protein_coding
description:
  Quinolinate synthetase complex, A subunit; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.


ensembl_gene_id: Theco_3682
symbol: ftsH
gene_biotype: protein_coding
description:
  ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family.  In the central section; belongs to the AAA ATPase family.


ensembl_gene_id: Theco_3683
symbol: AGA59703.1
gene_biotype: protein_coding
description:
  PFAM: Phosphoribosyl transferase domain; TIGRFAM: hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.


ensembl_gene_id: Theco_3684
symbol: tilS
gene_biotype: protein_coding
description:
  tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.


ensembl_gene_id: Theco_3697
symbol: AGA59716.1
gene_biotype: protein_coding
description:
  MazG family protein; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; MazG nucleotide pyrophosphohydrolase domain; TIGRFAM: MazG family protein.


ensembl_gene_id: Theco_3698
symbol: AGA59717.1
gene_biotype: protein_coding
description:
  Stage V sporulation protein T; PFAM: SpoVT / AbrB like domain; TIGRFAM: looped-hinge helix DNA binding domain, AbrB family; stage V sporulation protein T.


ensembl_gene_id: Theco_3700
symbol: AGA59719.1
gene_biotype: protein_coding
description:
  ABC-type Co2+ transport system, permease component; PFAM: Cobalt uptake substrate-specific transmembrane region; TIGRFAM: cobalamin biosynthesis protein CbiM.


ensembl_gene_id: Theco_3702
symbol: AGA59721.1
gene_biotype: protein_coding
description:
  Urea ABC transporter, ATP-binding protein UrtD; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter; TIGRFAM: urea ABC transporter, ATP-binding protein UrtD.


ensembl_gene_id: Theco_3703
symbol: AGA59722.1
gene_biotype: protein_coding
description:
  Urea ABC transporter, permease protein UrtC; PFAM: Branched-chain amino acid transport system / permease component; TIGRFAM: urea ABC transporter, permease protein UrtC; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Theco_3704
symbol: AGA59723.1
gene_biotype: protein_coding
description:
  Urea ABC transporter, permease protein UrtB; PFAM: Branched-chain amino acid transport system / permease component; TIGRFAM: urea ABC transporter, permease protein UrtB; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: Theco_3713
symbol: AGA59732.1
gene_biotype: protein_coding
description:
  Alcohol dehydrogenase, class IV; PFAM: Aldehyde dehydrogenase family; Iron-containing alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.


ensembl_gene_id: Theco_3716
symbol: mfd
gene_biotype: protein_coding
description:
  Transcription-repair coupling factor Mfd; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.


ensembl_gene_id: Theco_3718
symbol: pth
gene_biotype: protein_coding
description:
  peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.


ensembl_gene_id: Theco_3720
symbol: rplY
gene_biotype: protein_coding
description:
  Ribosomal protein L25, Ctc-form; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.


ensembl_gene_id: Theco_3721
symbol: glmU
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain.


ensembl_gene_id: Theco_3722
symbol: spoVG
gene_biotype: protein_coding
description:
  Uncharacterized protein, involved in the regulation of septum location; Could be involved in septation.


ensembl_gene_id: Theco_3724
symbol: AGA59743.1
gene_biotype: protein_coding
description:
  Pur operon repressor; PFAM: Phosphoribosyl transferase domain; Bacterial purine repressor, N-terminal; TIGRFAM: pur operon repressor, Bacillus subtilis type; xanthine phosphoribosyltransferase.


ensembl_gene_id: Theco_3725
symbol: ispE
gene_biotype: protein_coding
description:
  4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.


ensembl_gene_id: Theco_3729
symbol: rsmA
gene_biotype: protein_coding
description:
  Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.


ensembl_gene_id: Theco_3730
symbol: rnmV
gene_biotype: protein_coding
description:
  Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step.


ensembl_gene_id: Theco_3735
symbol: rsmI
gene_biotype: protein_coding
description:
  Putative S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.


ensembl_gene_id: Theco_3738
symbol: AGA59757.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Involved in initiation control of chromosome replication. Belongs to the YabA family.


ensembl_gene_id: Theco_3743
symbol: tmk
gene_biotype: protein_coding
description:
  Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.


ensembl_gene_id: Theco_3751
symbol: gyrA
gene_biotype: protein_coding
description:
  DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: Theco_3753
symbol: AGA59769.1
gene_biotype: protein_coding
description:
  Glutathione synthase/ribosomal protein S6 modification enzyme (glutaminyl transferase); PFAM: Tubulin-tyrosine ligase family.


ensembl_gene_id: Theco_3754
symbol: gyrB
gene_biotype: protein_coding
description:
  DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: Theco_3756
symbol: recF
gene_biotype: protein_coding
description:
  recF protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.


ensembl_gene_id: Theco_3758
symbol: AGA59774.1
gene_biotype: protein_coding
description:
  DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]


ensembl_gene_id: Theco_3759
symbol: dnaA
gene_biotype: protein_coding
description:
  Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.


ensembl_gene_id: Theco_3760
symbol: rpmH
gene_biotype: protein_coding
description:
  PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type; Belongs to the bacterial ribosomal protein bL34 family.


ensembl_gene_id: Theco_3761
symbol: rnpA
gene_biotype: protein_coding
description:
  Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.


ensembl_gene_id: Theco_3762
symbol: AGA59778.1
gene_biotype: protein_coding
description:
  Preprotein translocase subunit YidC; PFAM: 60Kd inner membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family, C-terminal domain.


ensembl_gene_id: Theco_3764
symbol: mnmE
gene_biotype: protein_coding
description:
  tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.


ensembl_gene_id: Theco_3765
symbol: mnmG
gene_biotype: protein_coding
description:
  Glucose-inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.


ensembl_gene_id: Theco_3766
symbol: rsmG
gene_biotype: protein_coding
description:
  16S rRNA (guanine(527)-N(7))-methyltransferase GidB; Specifically methylates the N7 position of guanine in position 535 of 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.


ensembl_gene_id: Theco_3767
symbol: AGA59783.1
gene_biotype: protein_coding
description:
  ParB-like partition protein; PFAM: ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins; Belongs to the ParB family.


ensembl_gene_id: Theco_3769
symbol: AGA59785.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function (DUF1016); ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins; Belongs to the ParB family.


ensembl_gene_id: Theco_3780
symbol: AGA59795.1
gene_biotype: protein_coding
description:
  Single stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.


ensembl_gene_id: Theco_3781
symbol: rpsR
gene_biotype: protein_coding
description:
  Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.


ensembl_gene_id: Theco_3790
symbol: AGA59805.1
gene_biotype: protein_coding
description:
  Putative signaling protein consisting of a modified GGDEF domain and a DHH domain protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family.


ensembl_gene_id: Theco_3792
symbol: AGA59807.1
gene_biotype: protein_coding
description:
  Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.


ensembl_gene_id: Theco_3793
symbol: purA
gene_biotype: protein_coding
description:
  Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.


ensembl_gene_id: Theco_3801
symbol: AGA59815.1
gene_biotype: protein_coding
description:
  Rhodanese-related sulfurtransferase; PFAM: SirA-like protein; Rhodanese-like domain; Belongs to the sulfur carrier protein TusA family.


ensembl_gene_id: Theco_3803
symbol: AGA59817.1
gene_biotype: protein_coding
description:
  Zn-dependent hydrolase, glyoxylase; PFAM: Metallo-beta-lactamase superfamily; Rhodanese-like domain.


ensembl_gene_id: Theco_3804
symbol: AGA59818.1
gene_biotype: protein_coding
description:
  Putative redox protein, regulator of disulfide bond formation; PFAM: SirA-like protein; Belongs to the sulfur carrier protein TusA family.


ensembl_gene_id: Theco_3818
symbol: AGA59829.1
gene_biotype: protein_coding
description:
  Histidine kinase; Member of the two-component regulatory system DegS/DegU, which plays an important role in the transition growth phase.


ensembl_gene_id: Theco_3820
symbol: AGA59831.1
gene_biotype: protein_coding
description:
  Putative S-layer protein; PFAM: S-layer homology domain; TIGRFAM: cyanobacterial long protein repeat.


ensembl_gene_id: Theco_3821
symbol: metK
gene_biotype: protein_coding
description:
  S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.


ensembl_gene_id: Theco_3828
symbol: AGA59839.1
gene_biotype: protein_coding
description:
  Exopolysaccharide biosynthesis protein, WecB/TagA/CpsF family; Catalyzes the conversion of GlcNAc-PP-undecaprenol into ManNAc-GlcNAc-PP-undecaprenol, the first committed lipid intermediate in the de novo synthesis of teichoic acid.


ensembl_gene_id: Theco_3831
symbol: AGA59842.1
gene_biotype: protein_coding
description:
  Phosphomannomutase; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I.


ensembl_gene_id: Theco_3832
symbol: fabZ
gene_biotype: protein_coding
description:
  Beta-hydroxyacyl-(acyl carrier protein) dehydratase FabZ; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs.


ensembl_gene_id: Theco_3833
symbol: AGA59844.1
gene_biotype: protein_coding
description:
  Phosphatidylglycerophosphate synthase; PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: Theco_3836
symbol: AGA59847.1
gene_biotype: protein_coding
description:
  Flagellar hook-basal body protein; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgB; fagellar hook-basal body proteins.


ensembl_gene_id: Theco_3837
symbol: AGA59848.1
gene_biotype: protein_coding
description:
  Flagellar basal body rod protein; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; Belongs to the flagella basal body rod proteins family.


ensembl_gene_id: Theco_3844
symbol: AGA59855.1
gene_biotype: protein_coding
description:
  Putative membrane protein; PFAM: Protein of unknown function (DUF1146); TIGRFAM: conserved hypothetical integral membrane protein.


ensembl_gene_id: Theco_3845
symbol: AGA59856.1
gene_biotype: protein_coding
description:
  Subtilisin-like serine protease; PFAM: S-layer homology domain; Subtilase family; Belongs to the peptidase S8 family.


ensembl_gene_id: Theco_3846
symbol: nuoN
gene_biotype: protein_coding
description:
  Proton-translocating NADH-quinone oxidoreductase, chain N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family.


ensembl_gene_id: Theco_3847
symbol: AGA59858.1
gene_biotype: protein_coding
description:
  PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M.


ensembl_gene_id: Theco_3848
symbol: AGA59859.1
gene_biotype: protein_coding
description:
  Proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L.


ensembl_gene_id: Theco_3849
symbol: nuoK
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family.


ensembl_gene_id: Theco_3850
symbol: AGA59861.1
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase subunit 6 (chain J); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: Theco_3851
symbol: nuoI
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: Theco_3852
symbol: nuoH
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase subunit 1 (chain H); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.


ensembl_gene_id: Theco_3853
symbol: nuoD
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase 49 kD subunit 7; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.


ensembl_gene_id: Theco_3854
symbol: nuoC
gene_biotype: protein_coding
description:
  NADH/F420H2 dehydrogenase, subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family.


ensembl_gene_id: Theco_3855
symbol: nuoB
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, B subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: Theco_3856
symbol: nuoA
gene_biotype: protein_coding
description:
  NADH:ubiquinone oxidoreductase subunit 3 (chain A); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family.


ensembl_gene_id: Theco_3857
symbol: AGA59868.1
gene_biotype: protein_coding
description:
  ABC-type multidrug transport system, ATPase and permease component; PFAM: ABC transporter; ABC transporter transmembrane region.


ensembl_gene_id: Theco_3858
symbol: atpC
gene_biotype: protein_coding
description:
  ATP synthase, F1 epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.


ensembl_gene_id: Theco_3859
symbol: atpD
gene_biotype: protein_coding
description:
  ATP synthase, F1 beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.


ensembl_gene_id: Theco_3860
symbol: atpG
gene_biotype: protein_coding
description:
  ATP synthase, F1 gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.


ensembl_gene_id: Theco_3861
symbol: atpA
gene_biotype: protein_coding
description:
  Proton translocating ATP synthase, F1 alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.


ensembl_gene_id: Theco_3862
symbol: atpH
gene_biotype: protein_coding
description:
  ATP synthase, F1 delta subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family.


ensembl_gene_id: Theco_3863
symbol: atpF
gene_biotype: protein_coding
description:
  ATP synthase, F0 subunit b; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.


ensembl_gene_id: Theco_3864
symbol: atpE
gene_biotype: protein_coding
description:
  ATP synthase, F0 subunit c; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: Theco_3865
symbol: atpB
gene_biotype: protein_coding
description:
  F0F1-type ATP synthase, alpha subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.


ensembl_gene_id: Theco_3869
symbol: upp
gene_biotype: protein_coding
description:
  Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.


ensembl_gene_id: Theco_3876
symbol: AGA59887.1
gene_biotype: protein_coding
description:
  Prepilin signal peptidase PulO-like peptidase; PFAM: Bacterial Peptidase A24 N-terminal domain; Type IV leader peptidase family.


ensembl_gene_id: Theco_3877
symbol: AGA59888.1
gene_biotype: protein_coding
description:
  PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.


ensembl_gene_id: Theco_3878
symbol: AGA59889.1
gene_biotype: protein_coding
description:
  Type II secretory pathway, component PulF; PFAM: Bacterial type II secretion system protein F domain.


ensembl_gene_id: Theco_3879
symbol: AGA59890.1
gene_biotype: protein_coding
description:
  Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain.


ensembl_gene_id: Theco_3880
symbol: glyA
gene_biotype: protein_coding
description:
  Glycine/serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.


ensembl_gene_id: Theco_3881
symbol: AGA59892.1
gene_biotype: protein_coding
description:
  TIGR01440 family protein; PFAM: Protein of unknown function (DUF436); TIGRFAM: TIGR01440 family protein; Belongs to the UPF0340 family.


ensembl_gene_id: Theco_3882
symbol: AGA59893.1
gene_biotype: protein_coding
description:
  PFAM: Ribose/Galactose Isomerase; TIGRFAM: ribose 5-phosphate isomerase B; ribose 5-phosphate isomerase; sugar-phosphate isomerases, RpiB/LacA/LacB family.


ensembl_gene_id: Theco_3884
symbol: mntP
gene_biotype: protein_coding
description:
  Putative membrane protein; Probably functions as a manganese efflux pump. Belongs to the MntP (TC 9.B.29) family.


ensembl_gene_id: Theco_3885
symbol: AGA59896.1
gene_biotype: protein_coding
description:
  Sua5/YciO/YrdC/YwlC family protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.


ensembl_gene_id: Theco_3888
symbol: prmC
gene_biotype: protein_coding
description:
  protein-(glutamine-N5) methyltransferase, release factor-specific; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.


ensembl_gene_id: Theco_3889
symbol: prfA
gene_biotype: protein_coding
description:
  Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.


ensembl_gene_id: Theco_3890
symbol: ychF
gene_biotype: protein_coding
description:
  Putative GTPase, probable translation factor; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.


ensembl_gene_id: Theco_3900
symbol: AGA59911.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial sugar transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.


ensembl_gene_id: Theco_3903
symbol: AGA59914.1
gene_biotype: protein_coding
description:
  dTDP-glucose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.


ensembl_gene_id: Theco_3904
symbol: AGA59915.1
gene_biotype: protein_coding
description:
  dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.


ensembl_gene_id: Theco_3921
symbol: glnS
gene_biotype: protein_coding
description:
  PFAM: tRNA synthetases class I (E and Q), catalytic domain; tRNA synthetases class I (E and Q), anti-codon binding domain; TIGRFAM: glutaminyl-tRNA synthetase.


ensembl_gene_id: Theco_3928
symbol: rbsK
gene_biotype: protein_coding
description:
  Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.


ensembl_gene_id: Theco_3932
symbol: AGA59939.1
gene_biotype: protein_coding
description:
  Conserved hypothetical integral membrane protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.


ensembl_gene_id: Theco_3939
symbol: AGA59946.1
gene_biotype: protein_coding
description:
  Putative RND superfamily drug exporter; PFAM: MMPL family; TIGRFAM: X-X-X-Leu-X-X-Gly heptad repeats; Transport protein.


ensembl_gene_id: Theco_3941
symbol: AGA59948.1
gene_biotype: protein_coding
description:
  PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box.


ensembl_gene_id: Theco_3944
symbol: AGA59950.1
gene_biotype: protein_coding
description:
  Putative Zn-dependent hydrolase of beta-lactamase fold protein; PFAM: Metallo-beta-lactamase superfamily; Belongs to the UPF0173 family.


ensembl_gene_id: Theco_3946
symbol: AGA59952.1
gene_biotype: protein_coding
description:
  TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED.


ensembl_gene_id: Theco_3956
symbol: AGA59961.1
gene_biotype: protein_coding
description:
  Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; manually curated.


ensembl_gene_id: Theco_3960
symbol: queF
gene_biotype: protein_coding
description:
  7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily.


ensembl_gene_id: Theco_3962
symbol: mqnD
gene_biotype: protein_coding
description:
  Putative periplasmic solute-binding protein; Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2); Belongs to the MqnA/MqnD family. MqnD subfamily.


ensembl_gene_id: Theco_3963
symbol: mqnB
gene_biotype: protein_coding
description:
  Futalosine nucleosidase; Catalyzes the hydrolysis of futalosine (FL) to dehypoxanthine futalosine (DHFL) and hypoxanthine, a step in the biosynthesis of menaquinone (MK, vitamin K2).


