# geneInfo

ensembl_gene_id: Turpa_1690
symbol: AFM12338.1
gene_biotype: protein_coding
description:
  KEGG: lbf:LBF_1078 hypothetical protein; SPTR: Putative chemotaxis protein histidine kinase; putative membrane protein; putative signal peptide.


ensembl_gene_id: Turpa_1692
symbol: AFM12340.1
gene_biotype: protein_coding
description:
  PFAM: Diacylglycerol kinase catalytic domain; COGs: COG1597 Sphingosine kinase; InterPro IPR001206; KEGG: sur:STAUR_3629 cosnerved hypothetical protein; PFAM: Diacylglycerol kinase, catalytic region; SPTR: Cosnerved uncharacterized protein.


ensembl_gene_id: Turpa_1694
symbol: AFM12342.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function (DUF433); InterPro IPR007367; KEGG: sus:Acid_0011 hypothetical protein; PFAM: Protein of unknown function DUF433; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1695
symbol: AFM12343.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF2161; PFAM: Uncharacterized conserved protein (DUF2161); COGs: COG5482 conserved hypothetical protein; InterPro IPR018679; KEGG: bbe:BBR47_45730 hypothetical protein; PFAM: Protein of unknown function DUF2161; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1696
symbol: AFM12344.1
gene_biotype: protein_coding
description:
  PFAM: Endonuclease/Exonuclease/phosphatase family; InterPro IPR005135; KEGG: ppn:Palpr_1335 endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase.


ensembl_gene_id: Turpa_1697
symbol: AFM12345.1
gene_biotype: protein_coding
description:
  PFAM: UvrD/REP helicase; COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: hmo:HM1_3029 ATP-dependent DNA helicase PcrA; PFAM: DNA helicase, UvrD/REP type; SPTR: ATP-dependent DNA helicase pcra.


ensembl_gene_id: Turpa_1698
symbol: ctaB
gene_biotype: protein_coding
description:
  Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.


ensembl_gene_id: Turpa_1699
symbol: AFM12347.1
gene_biotype: protein_coding
description:
  PFAM: GGDEF domain; Response regulator receiver domain; TIGRFAM: diguanylate cyclase (GGDEF) domain; COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR001789:IPR000160; KEGG: bha:BH2234 response regulatory protein (sensory transduction system); PFAM: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; SMART: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; SPTR: Response regulatory protein (Sensory transduction system); TIGRFAM: Diguanylate cyclase, predicted.


ensembl_gene_id: Turpa_1700
symbol: AFM12348.1
gene_biotype: protein_coding
description:
  Diguanylate phosphodiesterase; PFAM: EAL domain; Cyclic nucleotide-binding domain; COGs: COG2200 FOG: EAL domain; InterPro IPR000595:IPR001633; KEGG: syn:slr0842 hypothetical protein; PFAM: Diguanylate phosphodiesterase, predicted; Cyclic nucleotide-binding; SMART: Diguanylate phosphodiesterase, predicted; Cyclic nucleotide-binding; SPTR: Slr0842 protein.


ensembl_gene_id: Turpa_1701
symbol: AFM12349.1
gene_biotype: protein_coding
description:
  PFAM: Galactokinase galactose-binding signature; GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: galactokinase; COGs: COG0153 Galactokinase; InterPro IPR019539:IPR006204:IPR013750:IPR000705; KEGG: pdi:BDI_1666 galactokinase; PFAM: Galactokinase galactose-binding domain; GHMP kinase; GHMP kinase, C-terminal; SPTR: Galactokinase; TIGRFAM: Galactokinase; Belongs to the GHMP kinase family. GalK subfamily.


ensembl_gene_id: Turpa_1702
symbol: AFM12350.1
gene_biotype: protein_coding
description:
  PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family; COGs: COG4146 symporter; InterPro IPR001734:IPR019900; KEGG: amc:MADE_00234 putative sodium/hexose cotransport protein; PFAM: Sodium/solute symporter; SPTR: Putative uncharacterized protein; TIGRFAM: Sodium/solute symporter, subgroup; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: Turpa_1706
symbol: AFM12354.1
gene_biotype: protein_coding
description:
  PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1; InterPro IPR006683; PFAM: Thioesterase superfamily.


ensembl_gene_id: Turpa_1709
symbol: AFM12357.1
gene_biotype: protein_coding
description:
  Glyoxalase/bleomycin resistance protein/dioxygenase; COGs: COG3324 protein related to lactoylglutathione lyase; InterPro IPR004360; KEGG: afr:AFE_1839 hypothetical protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1711
symbol: AFM12359.1
gene_biotype: protein_coding
description:
  Filamentation induced by cAMP protein Fic; PFAM: Fic/DOC family; COGs: COG3177 conserved hypothetical protein; InterPro IPR003812; KEGG: cao:Celal_0699 filamentation induced by camp protein fic; PFAM: Filamentation induced by cAMP/death on curing, related; SPTR: Cell filamentation protein Fic.


ensembl_gene_id: Turpa_1715
symbol: AFM12363.1
gene_biotype: protein_coding
description:
  PFAM: haloacid dehalogenase-like hydrolase; COGs: COG0546 phosphatase; InterPro IPR005834; KEGG: lbf:LBF_2160 phosphatase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: Putative hydrolase, HAD superfamily.


ensembl_gene_id: Turpa_1716
symbol: AFM12364.1
gene_biotype: protein_coding
description:
  KEGG: npu:Npun_R6049 glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Turpa_1718
symbol: AFM12366.1
gene_biotype: protein_coding
description:
  Integrase catalytic region; PFAM: Integrase core domain; InterPro IPR001584; KEGG: nmu:Nmul_A2405 integrase catalytic subunit; PFAM: Integrase, catalytic core; SPTR: Integrase, catalytic region.


ensembl_gene_id: Turpa_1721
symbol: AFM12369.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function (DUF497); COGs: COG2929 conserved hypothetical protein; InterPro IPR007460; KEGG: sku:Sulku_0534 hypothetical protein; PFAM: Protein of unknown function DUF497; SPTR: Protein containing DUF497.


ensembl_gene_id: Turpa_1722
symbol: AFM12370.1
gene_biotype: protein_coding
description:
  InterPro IPR004360; KEGG: fre:Franean1_4341 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Turpa_1724
symbol: AFM12372.1
gene_biotype: protein_coding
description:
  PFAM: Pirin C-terminal cupin domain; Pirin; COGs: COG1741 Pirin-related protein; InterPro IPR003829:IPR008778; KEGG: aex:Astex_2519 pirin domain protein; PFAM: Pirin, N-terminal; Pirin, C-terminal; SPTR: Pirin domain protein; Belongs to the pirin family.


ensembl_gene_id: Turpa_1725
symbol: AFM12373.1
gene_biotype: protein_coding
description:
  PFAM: NHL repeat; InterPro IPR001258; KEGG: mpl:Mpal_0423 NHL repeat containing protein; PFAM: NHL repeat; SPTR: NHL repeat containing protein.


ensembl_gene_id: Turpa_1727
symbol: AFM12374.1
gene_biotype: protein_coding
description:
  Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PFAM: EAL domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain; COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterPro IPR000014:IPR001610:IPR000160:IPR001633:IPR013655:IPR0137 67; KEGG: slt:Slit_2517 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PFAM: Diguanylate cyclase, predicted; PAS fold-3; PAS fold; Diguanylate phosphodiesterase, predicted; SMART: Diguanylate cyclase, predicted; PAC motif; PAS; Diguanylate phosp [...]


ensembl_gene_id: Turpa_1729
symbol: AFM12376.1
gene_biotype: protein_coding
description:
  TIGRFAM: hemerythrin-like metal-binding domain; COGs: COG2703 Hemerythrin; InterPro IPR012312:IPR012827; KEGG: lbi:LEPBI_I2942 putative hemerythrin HHE cation binding protein; PFAM: Haemerythrin/HHE cation-binding motif; SPTR: Putative hemerythrin HHE cation binding protein; TIGRFAM: Haemerythrin-like, metal-binding.


ensembl_gene_id: Turpa_1730
symbol: selO
gene_biotype: protein_coding
description:
  UPF0061 protein ydiU; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family.


ensembl_gene_id: Turpa_1732
symbol: AFM12379.1
gene_biotype: protein_coding
description:
  PFAM: Fatty acid hydroxylase superfamily; COGs: COG3000 Sterol desaturase; InterPro IPR006694; KEGG: mxa:MXAN_6843 hypothetical protein; PFAM: Fatty acid hydroxylase; SPTR: Putative membrane protein.


ensembl_gene_id: Turpa_1734
symbol: AFM12381.1
gene_biotype: protein_coding
description:
  PFAM: SNARE associated Golgi protein; COGs: COG0398 conserved hypothetical protein; InterPro IPR015414; KEGG: fjo:Fjoh_1863 hypothetical protein; PFAM: SNARE associated Golgi protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1735
symbol: AFM12382.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF457, transmembrane; PFAM: Predicted membrane-bound metal-dependent hydrolase (DUF457); InterPro IPR007404; KEGG: nhl:Nhal_3460 membrane-bound metal-dependent hydrolase; PFAM: Protein of unknown function DUF457, transmembrane; SPTR: Membrane-bound metal-dependent hydrolase.


ensembl_gene_id: Turpa_1736
symbol: AFM12383.1
gene_biotype: protein_coding
description:
  Adenylate/guanylate cyclase with GAF sensor(s); PFAM: Adenylate and Guanylate cyclase catalytic domain; GAF domain; COGs: COG2114 Adenylate cyclase family 3 (some protein contain HAMP domain); InterPro IPR003018:IPR001054; KEGG: dat:HRM2_24460 two-component hybrid protein, sensory box hisitidine kinase/adenylate cyclase; PFAM: GAF; Adenylyl cyclase class-3/4/guanylyl cyclase; SMART: GAF; Adenylyl cyclase class-3/4/guanylyl cyclase; SPTR: Two-component hybrid protein, sensory box hisitidine kinase/adenylate cyclase.


ensembl_gene_id: Turpa_1737
symbol: AFM12384.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial regulatory proteins, tetR family; InterPro IPR001647; KEGG: pin:Ping_1790 transcriptional regulator of TetR family protein; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family protein.


ensembl_gene_id: Turpa_1738
symbol: AFM12385.1
gene_biotype: protein_coding
description:
  PFAM: AhpC/TSA family; InterPro IPR000866; KEGG: gfo:GFO_2503 thiol-disulfide oxidoreductase; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Thioredoxin family protein.


ensembl_gene_id: Turpa_1739
symbol: AFM12386.1
gene_biotype: protein_coding
description:
  DNA-3-methylpurine glycosylase; COGs: COG4335 DNA alkylation repair protein; KEGG: chu:CHU_1766 DNA-3-methylpurine glycosylase; SPTR: Heat shock protein.


ensembl_gene_id: Turpa_1741
symbol: AFM12388.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Beta-propeller repeat; KEGG: lil:LA_3276 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1742
symbol: mnmA
gene_biotype: protein_coding
description:
  tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.


ensembl_gene_id: Turpa_1743
symbol: AFM12390.1
gene_biotype: protein_coding
description:
  PFAM: Rhodanese-like domain; COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: nmi:NMO_0284 rhodanese-related sulfur transferase; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1748
symbol: AFM12395.1
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: lic:LIC12259 cytoplasmic membrane protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1750
symbol: AFM12397.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: 7TM diverse intracellular signalling; 7TMR-DISM extracellular 2; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR011622:IPR011623:IPR000005; KEGG: lbf:LBF_1176 AraC family transcriptional regulator; PFAM: Diverse 7TM receptor, transmembrane region; Diverse 7TM receptor, extracellular region 2; Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family.


ensembl_gene_id: Turpa_1754
symbol: AFM12401.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function (DUF2750); KEGG: hse:Hsero_3485 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1755
symbol: AFM12402.1
gene_biotype: protein_coding
description:
  DNA polymerase beta domain protein region; PFAM: Nucleotidyltransferase domain; COGs: COG1669 nucleotidyltransferase; InterPro IPR002934; KEGG: mbn:Mboo_0374 DNA polymerase beta subunit; PFAM: Nucleotidyltransferase; SPTR: DNA polymerase, beta domain protein region.


ensembl_gene_id: Turpa_1756
symbol: AFM12403.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function DUF86; COGs: COG2361 conserved hypothetical protein; InterPro IPR008201; KEGG: lbf:LBF_0617 hypothetical protein; PFAM: Protein of unknown function DUF86; SPTR: Putative nucleotidyltransferase.


ensembl_gene_id: Turpa_1758
symbol: AFM12405.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Bacterial transferase hexapeptide (three repeats); InterPro IPR001451; KEGG: app:CAP2UW1_3656 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1759
symbol: AFM12406.1
gene_biotype: protein_coding
description:
  Alkane 1-monooxygenase; PFAM: Fatty acid desaturase; InterPro IPR005804; KEGG: lpa:lpa_04391 alkane 1-monooxygenase; PFAM: Fatty acid desaturase, type 1; SPTR: Alkane 1-monooxygenase.


ensembl_gene_id: Turpa_1760
symbol: AFM12407.1
gene_biotype: protein_coding
description:
  AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme; COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: dbr:Deba_3255 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; SPTR: AMP-dependent synthetase and ligase.


ensembl_gene_id: Turpa_1761
symbol: AFM12408.1
gene_biotype: protein_coding
description:
  Translation factor SUA5; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.


ensembl_gene_id: Turpa_1762
symbol: AFM12409.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Domain of unknown function (DU1801); Uncharacterized protein conserved in bacteria (DUF2200); COGs: COG4898 conserved hypothetical protein; InterPro IPR014922:IPR014580; KEGG: phe:Phep_2410 hypothetical protein; PFAM: Uncharacterised conserved protein UCP033199; Protein of unknown function DUF1801; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1764
symbol: AFM12411.1
gene_biotype: protein_coding
description:
  InterPro IPR000073; KEGG: dal:Dalk_4424 hypothetical protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1765
symbol: AFM12412.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: YgiT-type zinc finger domain; KEGG: mar:MAE_35950 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1767
symbol: cas2
gene_biotype: protein_coding
description:
  Hypothetical protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.


ensembl_gene_id: Turpa_1771
symbol: AFM12418.1
gene_biotype: protein_coding
description:
  PFAM: Curli production assembly/transport component CsgG; InterPro IPR005534; KEGG: gau:GAU_3863 hypothetical protein; PFAM: Curli production assembly/transport component CsgG; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1773
symbol: AFM12420.1
gene_biotype: protein_coding
description:
  Adenylate/guanylate cyclase with integral membrane sensor; PFAM: Adenylate and Guanylate cyclase catalytic domain; HAMP domain; COGs: COG2114 Adenylate cyclase family 3 (some protein contain HAMP domain); InterPro IPR003660:IPR001054; KEGG: lic:LIC11437 adenylate/guanylate cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; HAMP linker domain; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase; HAMP linker domain; SPTR: Adenylate/guanylate cyclase.


ensembl_gene_id: Turpa_1776
symbol: AFM12423.1
gene_biotype: protein_coding
description:
  ABC-1 domain-containing protein; PFAM: ABC1 family; COGs: COG0661 unusual protein kinase; InterPro IPR004147; KEGG: hch:HCH_01665 protein kinase; PFAM: ABC-1; SPTR: Predicted unusual protein kinase.


ensembl_gene_id: Turpa_1777
symbol: AFM12424.1
gene_biotype: protein_coding
description:
  PFAM: NUDIX domain; COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086; KEGG: cdf:CD0705 putative DNA repair protein; PFAM: NUDIX hydrolase domain; SPTR: Putative DNA repair protein.


ensembl_gene_id: Turpa_1779
symbol: AFM12426.1
gene_biotype: protein_coding
description:
  PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; COGs: COG4770 Acetyl/propionyl-CoA carboxylase alpha subunit; InterPro IPR005481:IPR005479:IPR005482; KEGG: purK; putative Methylcrotonoyl-Coenzyme A carboxylase 1 (alpha); PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; SPTR: Putative Methylcrotonoyl-Coenzyme A carboxylase 1 (Alpha).


ensembl_gene_id: Turpa_1780
symbol: AFM12427.1
gene_biotype: protein_coding
description:
  InterPro IPR019734:IPR001440; KEGG: lic:LIC10673 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: TPR-repeat-containing protein.


ensembl_gene_id: Turpa_1783
symbol: AFM12430.1
gene_biotype: protein_coding
description:
  Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain-containing protein; PFAM: tRNA synthetases class I (E and Q), catalytic domain; COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase; InterPro IPR020058; KEGG: dak:DaAHT2_1995 glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain protein; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; SPTR: Putative glutamyl-Q tRNA(Asp) synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: Turpa_1784
symbol: AFM12431.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: ATP-NAD kinase; KEGG: fps:FP1085 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1785
symbol: AFM12432.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: SPFH domain / Band 7 family; KEGG: fps:FP1084 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1786
symbol: AFM12433.1
gene_biotype: protein_coding
description:
  Transporter, UIT6 family; COGs: COG1055 Na+/H+ antiporter NhaD and related arsenite permease; InterPro IPR004680; KEGG: lbf:LBF_0706 Na+/H+ antiporter; PFAM: Divalent ion symporter; SPTR: Putative uncharacterized protein; TC 9.B.53.


ensembl_gene_id: Turpa_1787
symbol: AFM12434.1
gene_biotype: protein_coding
description:
  OmpA/MotB domain protein; PFAM: OmpA family; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: lic:LIC20250 peptidoglycan-associated cytoplasmic membrane protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA-family protein.


ensembl_gene_id: Turpa_1788
symbol: AFM12435.1
gene_biotype: protein_coding
description:
  PFAM: Glutathione S-transferase, N-terminal domain; InterPro IPR004045; KEGG: scl:sce5090 putative glutathione S-transferase; PFAM: Glutathione S-transferase, N-terminal; SPTR: Putative glutathione S-transferase.


ensembl_gene_id: Turpa_1791
symbol: AFM12438.1
gene_biotype: protein_coding
description:
  PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR003594; KEGG: lbf:LBF_2664 CheY-like receiver domain-containing response regulator; PFAM: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region; SMART: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region; SPTR: Putative two-component signal transduction system.


ensembl_gene_id: Turpa_1792
symbol: AFM12439.1
gene_biotype: protein_coding
description:
  PFAM: Penicillin amidase; COGs: COG2366 Protein related to penicillin acylase; InterPro IPR002692; KEGG: pag:PLES_42911 QuiP; PFAM: Peptidase S45, penicillin amidase; SPTR: QuiP.


ensembl_gene_id: Turpa_1793
symbol: AFM12440.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function (DUF721); InterPro IPR007922; PFAM: Protein of unknown function DUF721.


ensembl_gene_id: Turpa_1794
symbol: AFM12441.1
gene_biotype: protein_coding
description:
  PFAM: Beta-lactamase; COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: lbf:LBF_0508 penicillin binding protein; PFAM: Beta-lactamase-related; SPTR: Putative penicillin-binding protein, transpeptidase; putative signal peptide.


ensembl_gene_id: Turpa_1796
symbol: AFM12443.1
gene_biotype: protein_coding
description:
  PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; COGs: COG0773 UDP-N-acetylmuramate-alanine ligase; InterPro IPR000713:IPR013221:IPR004101; KEGG: hor:Hore_09100 UDP-N-acetylmuramate--alanine ligase; PFAM: Mur ligase, N-terminal; Mur ligase, central; Mur ligase, C-terminal; SPTR: UDP-N-acetylmuramate--L-alanine ligase.


ensembl_gene_id: Turpa_1797
symbol: infA
gene_biotype: protein_coding
description:
  Bacterial translation initiation factor 1 (bIF-1); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.


ensembl_gene_id: Turpa_1798
symbol: AFM12445.1
gene_biotype: protein_coding
description:
  UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.


ensembl_gene_id: Turpa_1799
symbol: AFM12446.1
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase RecG; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecG; COGs: COG1200 RecG-like helicase; InterPro IPR014001:IPR001650:IPR004365:IPR011545; KEGG: lbf:LBF_0338 ATP-dependent DNA helicase RecG; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: ATP-dependent DNA helicase RecG.


ensembl_gene_id: Turpa_1800
symbol: AFM12447.1
gene_biotype: protein_coding
description:
  Apolipoprotein A1/A4/E; InterPro IPR000074; KEGG: lbf:LBF_2626 hypothetical protein; PFAM: Apolipoprotein A1/A4/E; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1801
symbol: AFM12448.1
gene_biotype: protein_coding
description:
  Anti-anti-sigma regulatory factor, SpoIIAA; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor; COGs: COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); InterPro IPR002645:IPR003658; KEGG: lbl:LBL_2243 anti-sigma factor antagonist; PFAM: Sulphate transporter/antisigma-factor antagonist STAS; SPTR: Anti-sigma factor antagonist; TIGRFAM: Anti-sigma factor antagonist; manually curated; Belongs to the anti-sigma-factor antagonist family.


ensembl_gene_id: Turpa_1802
symbol: AFM12449.1
gene_biotype: protein_coding
description:
  PFAM: START domain; InterPro IPR002913; KEGG: xac:XAC0537 hypothetical protein; PFAM: Lipid-binding START; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1803
symbol: AFM12450.1
gene_biotype: protein_coding
description:
  Diguanylate cyclase/phosphodiesterase with CBS domains; PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain; COGs: COG2200 FOG: EAL domain; InterPro IPR001633:IPR000160:IPR000644; KEGG: din:Selin_0020 EAL domain-containing protein; PFAM: Diguanylate phosphodiesterase, predicted; Cystathionine beta-synthase, core; Diguanylate cyclase, predicted; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; SPTR: EAL domain protein; TIGRFAM: Diguanylate cyclase, predicted.


ensembl_gene_id: Turpa_1804
symbol: AFM12451.1
gene_biotype: protein_coding
description:
  PFAM: Nitroreductase family; COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: lbf:LBF_3242 nitroreductase; PFAM: Nitroreductase-like; SPTR: Putative nitroreductase.


ensembl_gene_id: Turpa_1806
symbol: AFM12453.1
gene_biotype: protein_coding
description:
  ABC-type transporter, periplasmic subunit; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle; COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: lbf:LBF_0817 ABC transporter substrate binding protein; PFAM: Bacterial extracellular solute-binding protein, family 5; SPTR: Dipeptide-binding protein.


ensembl_gene_id: Turpa_1808
symbol: AFM12455.1
gene_biotype: protein_coding
description:
  Glycosyl transferase family 51; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; COGs: COG0744 Membrane carboxypeptidase (penicillin-binding protein); InterPro IPR001264:IPR001460; KEGG: lbf:LBF_0816 penicillin binding protein 1; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; SPTR: Penicillin-binding protein 1 (PBP-1a; PBP1a).


ensembl_gene_id: Turpa_1809
symbol: rplU
gene_biotype: protein_coding
description:
  LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.


ensembl_gene_id: Turpa_1810
symbol: AFM12457.1
gene_biotype: protein_coding
description:
  PFAM: Polyketide cyclase / dehydrase and lipid transport; InterPro IPR019587; KEGG: cpi:Cpin_1121 hypothetical protein; PFAM: Polyketide cyclase/dehydrase; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1811
symbol: AFM12458.1
gene_biotype: protein_coding
description:
  PFAM: Adenylate and Guanylate cyclase catalytic domain; 7TM diverse intracellular signalling; 7TMR-DISM extracellular 2; COGs: COG2114 Adenylate cyclase family 3 (some protein contain HAMP domain); InterPro IPR001054:IPR011622:IPR011623; KEGG: lil:LA_3843 adenylate/guanylate cyclase; PFAM: Diverse 7TM receptor, transmembrane region; Diverse 7TM receptor, extracellular region 2; Adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase; SPTR: Adenylate/guanylate cyclase.


ensembl_gene_id: Turpa_1812
symbol: AFM12459.1
gene_biotype: protein_coding
description:
  PFAM: Inorganic pyrophosphatase; COGs: COG0221 Inorganic pyrophosphatase; InterPro IPR008162; KEGG: nde:NIDE3643 inorganic pyrophosphatase; PFAM: Inorganic pyrophosphatase; SPTR: Inorganic pyrophosphatase.


ensembl_gene_id: Turpa_1813
symbol: AFM12460.1
gene_biotype: protein_coding
description:
  PFAM: ABC transporter; COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003593:IPR003439; KEGG: scl:sce5490 putative ATP-binding component of a transport system; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ATPase components of abc transporters with duplicated ATPase domains.


ensembl_gene_id: Turpa_1814
symbol: AFM12461.1
gene_biotype: protein_coding
description:
  COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003439; KEGG: syn:slr0864 ABC transporter; PFAM: ABC transporter-like; SPTR: ABC transporter, duplicated ATPase domains.


ensembl_gene_id: Turpa_1815
symbol: AFM12462.1
gene_biotype: protein_coding
description:
  ABC transporter related protein; PFAM: ATPase family associated with various cellular activities (AAA); COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003593:IPR003439; KEGG: cai:Caci_7127 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related.


ensembl_gene_id: Turpa_1817
symbol: AFM12464.1
gene_biotype: protein_coding
description:
  PFAM: Ferric uptake regulator family; COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: lbf:LBF_2263 FUR family transcriptional regulator; PFAM: Ferric-uptake regulator; SPTR: FUR family transcriptional regulator; Belongs to the Fur family.


ensembl_gene_id: Turpa_1820
symbol: AFM12467.1
gene_biotype: protein_coding
description:
  PFAM: haloacid dehalogenase-like hydrolase; COGs: COG0546 phosphatase; InterPro IPR005834; KEGG: lbl:LBL_1043 phosphatase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: Phosphatase.


ensembl_gene_id: Turpa_1821
symbol: AFM12468.1
gene_biotype: protein_coding
description:
  Histidine triad (HIT) protein; PFAM: HIT domain; COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; InterPro IPR001310; KEGG: rce:RC1_0539 histidine triad protein, putative; PFAM: Histidine triad (HIT) protein; SPTR: Histidine triad protein, putative.


ensembl_gene_id: Turpa_1823
symbol: AFM12470.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Caspase domain; KEGG: wch:wcw_0256 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1824
symbol: AFM12471.1
gene_biotype: protein_coding
description:
  Pyruvate phosphate dikinase; PFAM: PEP-utilising enzyme, TIM barrel domain; PEP-utilising enzyme, mobile domain; Pyruvate phosphate dikinase, PEP/pyruvate binding domain; TIGRFAM: pyruvate, phosphate dikinase; COGs: COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; InterPro IPR002192:IPR008279:IPR000121:IPR010121; KEGG: ddf:DEFDS_0235 pyruvate phosphate dikinase; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile region; PEP-utilising enzyme; SPTR: Pyruvate phosphate dikinase; TIGRFAM: Pyruvate, phosphate dikinase; Belongs to the PEP-u [...]


ensembl_gene_id: Turpa_1826
symbol: AFM12473.1
gene_biotype: protein_coding
description:
  PFAM: Thioesterase superfamily; COGs: COG1607 Acyl-CoA hydrolase; InterPro IPR006683; KEGG: lbl:LBL_1429 acyl-CoA hydrolase; PFAM: Thioesterase superfamily; SPTR: Acyl-CoA hydrolase.


ensembl_gene_id: Turpa_1828
symbol: AFM12475.1
gene_biotype: protein_coding
description:
  4-diphosphocytidyl-2C-methyl-D-erythritol synthase; PFAM: Uncharacterized protein family UPF0007; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; COGs: COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase; InterPro IPR001228; KEGG: met:M446_5927 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; SPTR: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase.


ensembl_gene_id: Turpa_1829
symbol: AFM12476.1
gene_biotype: protein_coding
description:
  PilT protein domain protein; PFAM: TRAM domain; PIN domain; COGs: COG4956 Integral membrane protein (PIN domain superfamily); InterPro IPR006596:IPR002716:IPR002792; KEGG: lbl:LBL_0281 hypothetical protein; PFAM: PilT protein, N-terminal; Deoxyribonuclease/rho motif-related TRAM; SMART: Nucleotide binding protein, PINc; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1830
symbol: AFM12477.1
gene_biotype: protein_coding
description:
  PFAM: CarD-like/TRCF domain; COGs: COG1329 Transcriptional regulators similar to M. xanthus CarD; InterPro IPR003711; KEGG: lbl:LBL_0280 transcriptional regulator; PFAM: Transcription factor CarD; SPTR: Transcriptional regulator (CarD family).


ensembl_gene_id: Turpa_1831
symbol: AFM12478.1
gene_biotype: protein_coding
description:
  PFAM: O-Antigen ligase; COGs: COG3307 Lipid A core - O-antigen ligase; InterPro IPR007016; KEGG: tra:Trad_0737 O-antigen polymerase; PFAM: O-antigen ligase-related; SPTR: O-antigen polymerase.


ensembl_gene_id: Turpa_1832
symbol: AFM12479.1
gene_biotype: protein_coding
description:
  PFAM: Glycosyl transferase family 2; COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: eca:ECA1437 O antigen biosynthesis rhamnosyltransferase rfbn; PFAM: Glycosyl transferase, family 2; SPTR: O antigen biosynthesis rhamnosyltransferase rfbN.


ensembl_gene_id: Turpa_1833
symbol: AFM12480.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial sugar transferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Undecaprenyl-phosphate galactose phosphotransferase, WbaP; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362:IPR017472:IPR017475; KEGG: pmx:PERMA_2008 putative undecaprenyl-phosphate galactosephosphotransferase; PFAM: Bacterial sugar transferase; SPTR: Putative undecaprenyl-phosphate galactosephosphotransferase; TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Undecaprenyl-phosphate galactose phosphotr [...]


ensembl_gene_id: Turpa_1834
symbol: AFM12481.1
gene_biotype: protein_coding
description:
  UDP-galactose 4-epimerase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: UDP-glucose-4-epimerase; COGs: COG1087 UDP-glucose 4-epimerase; InterPro IPR001509:IPR005886; KEGG: cts:Ctha_0049 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: UDP-glucose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.


ensembl_gene_id: Turpa_1835
symbol: AFM12482.1
gene_biotype: protein_coding
description:
  PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR014001:IPR001650:IPR011545; KEGG: lbf:LBF_2082 superfamily II DNA and RNA helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.


ensembl_gene_id: Turpa_1838
symbol: AFM12485.1
gene_biotype: protein_coding
description:
  PFAM: Fe-S metabolism associated domain; COGs: COG2166 SufE protein probably involved in Fe-S center assembly; InterPro IPR003808; KEGG: rmr:Rmar_2026 Fe-S metabolism associated SufE; PFAM: Fe-S metabolism associated SufE; SPTR: Fe-S metabolism associated SufE.


ensembl_gene_id: Turpa_1839
symbol: AFM12486.1
gene_biotype: protein_coding
description:
  PFAM: PEGA domain; InterPro IPR013229; KEGG: dth:DICTH_1706 hypothetical protein; PFAM: PEGA; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1840
symbol: AFM12487.1
gene_biotype: protein_coding
description:
  PFAM: Amidohydrolase family; COGs: COG0402 Cytosine deaminase and related metal-dependent hydrolase; InterPro IPR006680; KEGG: amidohydrolase; PFAM: Amidohydrolase 1; SPTR: Amidohydrolase.


ensembl_gene_id: Turpa_1841
symbol: AFM12488.1
gene_biotype: protein_coding
description:
  3-deoxy-D-arabinoheptulosonate-7-phosphate synthase; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP).


ensembl_gene_id: Turpa_1842
symbol: AFM12489.1
gene_biotype: protein_coding
description:
  PTS system IIA component, Fru family; PFAM: Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; COGs: COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); InterPro IPR002178; KEGG: lbl:LBL_0774 protein-N(pi)-phosphohistidine-sugar phosphotransferase, subunit A; PFAM: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; SPTR: Protein-N(Pi)-phosphohistidine-sugar phosphotransferase, subunit A; TC 4.A.2.


ensembl_gene_id: Turpa_1843
symbol: AFM12490.1
gene_biotype: protein_coding
description:
  PFAM: Glycosyl transferases group 1; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: hya:HY04AAS1_0697 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1.


ensembl_gene_id: Turpa_1845
symbol: AFM12492.1
gene_biotype: protein_coding
description:
  Pirin domain protein; PFAM: Pirin; COGs: COG1741 Pirin-related protein; InterPro IPR003829; KEGG: cpi:Cpin_0380 pirin; PFAM: Pirin, N-terminal; SPTR: Pirin domain protein; Belongs to the pirin family.


ensembl_gene_id: Turpa_1846
symbol: AFM12493.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF107; PFAM: NfeD-like; COGs: COG1585 Membrane protein implicated in regulation of membrane protease activity; InterPro IPR002810; KEGG: slo:Shew_3388 hypothetical protein; PFAM: Nodulation efficiency, NfeD; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1847
symbol: AFM12494.1
gene_biotype: protein_coding
description:
  PFAM: SPFH domain / Band 7 family; COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107; KEGG: shm:Shewmr7_0450 SPFH domain-containing protein/band 7 family protein; PFAM: Band 7 protein; SMART: Band 7 protein; SPTR: SPFH domain, Band 7 family protein.


ensembl_gene_id: Turpa_1848
symbol: AFM12495.1
gene_biotype: protein_coding
description:
  PFAM: SPFH domain / Band 7 family; COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107; KEGG: sdn:Sden_3070 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein; SPTR: SPFH domain, Band 7 family protein.


ensembl_gene_id: Turpa_1849
symbol: AFM12496.1
gene_biotype: protein_coding
description:
  PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; COGs: COG0334 Glutamate dehydrogenase/leucine dehydrogenase; InterPro IPR006097:IPR006096; KEGG: pop:POPTR_826140 glutamate dehydrogenase (NAD(P)+); PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation region; SPTR: Putative uncharacterized protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.


ensembl_gene_id: Turpa_1850
symbol: AFM12497.1
gene_biotype: protein_coding
description:
  PFAM: MreB/Mbl protein; TIGRFAM: cell shape determining protein, MreB/Mrl family; COGs: COG1077 Actin-like ATPase involved in cell morphogenesis; InterPro IPR004753; KEGG: lic:LIC11258 rod shape-determining protein MreB; PFAM: Cell shape determining protein MreB/Mrl; SPTR: Actin-like ATPase involved in cell morphogenesis; TIGRFAM: Cell shape determining protein MreB/Mrl.


ensembl_gene_id: Turpa_1853
symbol: AFM12500.1
gene_biotype: protein_coding
description:
  FolC bifunctional protein; PFAM: Mur ligase middle domain; TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase; COGs: COG0285 Folylpolyglutamate synthase; InterPro IPR013221:IPR001645; KEGG: ace:Acel_0742 FolC bifunctional protein; PFAM: Mur ligase, central; SPTR: FolC bifunctional protein; TIGRFAM: Folylpolyglutamate synthetase.


ensembl_gene_id: Turpa_1855
symbol: AFM12502.1
gene_biotype: protein_coding
description:
  KEGG: ssm:Spirs_1498 protein serine/threonine phosphatase; SPTR: Protein serine/threonine phosphatase.


ensembl_gene_id: Turpa_1856
symbol: AFM12503.1
gene_biotype: protein_coding
description:
  COGs: COG1235 Metal-dependent hydrolase of the beta-lactamase superfamily I; KEGG: lbf:LBF_1268 metal-dependent hydrolase; SPTR: Putative metal-dependent hydrolase of the beta-lactamase superfamily I.


ensembl_gene_id: Turpa_1857
symbol: AFM12504.1
gene_biotype: protein_coding
description:
  Multiple antibiotic resistance (MarC)-related protein; PFAM: MarC family integral membrane protein; TIGRFAM: membrane protein, MarC family; COGs: COG2095 Multiple antibiotic transporter; InterPro IPR002771; KEGG: sat:SYN_01458 MarC family integral membrane protein; PFAM: Multiple antibiotic resistance (MarC)-related; SPTR: MarC family integral membrane protein; TIGRFAM: Multiple antibiotic resistance (MarC)-related.


ensembl_gene_id: Turpa_1858
symbol: AFM12505.1
gene_biotype: protein_coding
description:
  Dehydrogenase; PFAM: Glucose / Sorbosone dehydrogenase; COGs: COG2133 Glucose/sorbosone dehydrogenase; KEGG: lbl:LBL_1510 dehydrogenase; SPTR: Dehydrogenase.


ensembl_gene_id: Turpa_1863
symbol: ispG
gene_biotype: protein_coding
description:
  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.


ensembl_gene_id: Turpa_1864
symbol: AFM12511.1
gene_biotype: protein_coding
description:
  Diverse 7TM receptor transmembrane region; PFAM: 7TM diverse intracellular signalling; 7TMR-DISM extracellular 2; Stage II sporulation protein E (SpoIIE); InterPro IPR001932:IPR011623:IPR010822; KEGG: lbf:LBF_5009 serine phosphatase RsbU, regulator of sigma subunit; PFAM: Diverse 7TM receptor, transmembrane region; Sporulation stage II, protein E C-terminal; SMART: Protein phosphatase 2C-related; SPTR: Putative phosphoserine phosphatase; putative membrane protein.


ensembl_gene_id: Turpa_1865
symbol: AFM12512.1
gene_biotype: protein_coding
description:
  Protein serine/threonine phosphatase; PFAM: 7TM diverse intracellular signalling; 7TMR-DISM extracellular 2; Stage II sporulation protein E (SpoIIE); COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR001932:IPR010822; KEGG: lbf:LBF_5009 serine phosphatase RsbU, regulator of sigma subunit; PFAM: Sporulation stage II, protein E C-terminal; SMART: Protein phosphatase 2C-related; SPTR: Putative phosphoserine phosphatase; putative membrane protein.


ensembl_gene_id: Turpa_1866
symbol: AFM12513.1
gene_biotype: protein_coding
description:
  PFAM: Fatty acid desaturase; COGs: COG3239 Fatty acid desaturase; InterPro IPR005804; KEGG: sur:STAUR_0738 linoleoyl-CoA desaturase; PFAM: Fatty acid desaturase, type 1; SPTR: Linoleoyl-CoA desaturase.


ensembl_gene_id: Turpa_1867
symbol: AFM12514.1
gene_biotype: protein_coding
description:
  PFAM: Malic enzyme, NAD binding domain; Malic enzyme, N-terminal domain; COGs: COG0281 Malic enzyme; InterPro IPR002912:IPR012301:IPR012302; KEGG: gsu:GSU2308 malate oxidoreductase; PFAM: Malic enzyme, N-terminal; Amino acid-binding ACT; Malic enzyme, NAD-binding; SPTR: Malate oxidoreductase.


ensembl_gene_id: Turpa_1868
symbol: AFM12515.1
gene_biotype: protein_coding
description:
  PFAM: Esterase PHB depolymerase; TIGRFAM: esterase, PHB depolymerase family; COGs: COG3509 Poly(3-hydroxybutyrate) depolymerase; InterPro IPR010126; KEGG: sur:STAUR_0730 esterase; PFAM: Esterase, PHB depolymerase; SPTR: Esterase, PHB depolymerase family; TIGRFAM: Esterase, PHB depolymerase.


ensembl_gene_id: Turpa_1870
symbol: AFM12517.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF306 Meta and HslJ; PFAM: META domain; InterPro IPR005184; KEGG: chl:Chy400_1574 hypothetical protein; PFAM: Domain of unknown function DUF306, Meta/HslJ; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1871
symbol: AFM12518.1
gene_biotype: protein_coding
description:
  PFAM: FecR protein; InterPro IPR006860; KEGG: lic:LIC11643 LipL45; PFAM: FecR protein; SPTR: LipL45.


ensembl_gene_id: Turpa_1872
symbol: AFM12519.1
gene_biotype: protein_coding
description:
  Methyltransferase type 11; PFAM: Methyltransferase domain; InterPro IPR013216; KEGG: tbd:Tbd_2169 hypothetical protein; PFAM: Methyltransferase type 11; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1873
symbol: AFM12520.1
gene_biotype: protein_coding
description:
  PFAM: Response regulator receiver domain; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789; KEGG: bgf:BC1003_2352 winged helix family two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, winged helix family.


ensembl_gene_id: Turpa_1875
symbol: AFM12522.1
gene_biotype: protein_coding
description:
  TolC-like protein; PFAM: Outer membrane efflux protein; COGs: COG1538 Outer membrane protein; KEGG: lbf:LBF_2005 TolC-like protein; SPTR: Putative outer membrane efflux protein; putative signal peptide.


ensembl_gene_id: Turpa_1876
symbol: AFM12523.1
gene_biotype: protein_coding
description:
  PFAM: CoA binding domain; COGs: COG1832 CoA-binding protein; InterPro IPR003781; KEGG: tle:Tlet_0835 CoA-binding domain-containing protein; PFAM: CoA-binding; SPTR: CoA-binding domain protein.


ensembl_gene_id: Turpa_1879
symbol: AFM12526.1
gene_biotype: protein_coding
description:
  NHL repeat containing protein; InterPro IPR001258; KEGG: sur:STAUR_1411 hypothetical protein; PFAM: NHL repeat; SPTR: NHL repeat.


ensembl_gene_id: Turpa_1880
symbol: AFM12527.1
gene_biotype: protein_coding
description:
  Flagellar hook-basal body protein; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: fagellar hook-basal body proteins; COGs: COG4786 Flagellar basal body rod protein; InterPro IPR001444:IPR010930:IPR020013; KEGG: lbl:LBL_1819 endoflagellar distal basal body rod protein; PFAM: Protein of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal; SPTR: Endoflagellar distal basal body rod protein; TIGRFAM: Fagellar hook-basal body protein, FlgE/F/G.


ensembl_gene_id: Turpa_1881
symbol: AFM12528.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Beta-propeller repeat; KEGG: lic:LIC10868 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1882
symbol: AFM12529.1
gene_biotype: protein_coding
description:
  InterPro IPR019734:IPR013105; KEGG: plt:Plut_0369 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR2; SMART: Tetratricopeptide repeat; SPTR: Tetratricopeptide repeat domain protein.


ensembl_gene_id: Turpa_1883
symbol: AFM12530.1
gene_biotype: protein_coding
description:
  Integral membrane sensor hybrid histidine kinase; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; Stage II sporulation protein E (SpoIIE); COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660:IPR003661:IPR003594:IPR001789:IPR001932:IPR0108 22; KEGG: lbf:LBF_0920 two component response regulator sensor histidine kinase/response regulator subunits; PFAM: Sporulation stage II, protein E C-terminal; Signal transduction response regulator, receiver region; ATP-binding reg [...]


ensembl_gene_id: Turpa_1885
symbol: AFM12532.1
gene_biotype: protein_coding
description:
  Putative peptidoglycan peptidase; PFAM: Orthopoxvirus protein of unknown function (DUF830); InterPro IPR010529; KEGG: putative peptidoglycan peptidase; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1889
symbol: AFM12536.1
gene_biotype: protein_coding
description:
  Diguanylate cyclase; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain; COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: dol:Dole_1081 diguanylate cyclase; PFAM: Diguanylate cyclase, predicted; SMART: Diguanylate cyclase, predicted; SPTR: Diguanylate cyclase; TIGRFAM: Diguanylate cyclase, predicted.


ensembl_gene_id: Turpa_1890
symbol: AFM12537.1
gene_biotype: protein_coding
description:
  PFAM: ABC transporter; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: amr:AM1_D0149 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein.


ensembl_gene_id: Turpa_1891
symbol: AFM12538.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF214; PFAM: Predicted permease; COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: lbf:LBF_5039 permease component of an ABC transporter complex; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: ABC-type transport system, permease; putative membrane protein; putative signal peptide.


ensembl_gene_id: Turpa_1892
symbol: AFM12539.1
gene_biotype: protein_coding
description:
  InterPro IPR000089; KEGG: lbf:LBF_5040 membrane-fusion protein; PFAM: Biotin/lipoyl attachment; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1893
symbol: AFM12540.1
gene_biotype: protein_coding
description:
  PFAM: Alpha/Beta hydrolase family of unknown function (DUF1234); COGs: COG3545 esterase of the alpha/beta hydrolase fold; InterPro IPR010662; KEGG: cao:Celal_0270 hypothetical protein; PFAM: Protein of unknown function DUF1234; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1895
symbol: AFM12542.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function (DUF1554); InterPro IPR011448; KEGG: afw:Anae109_2925 hypothetical protein; PFAM: Protein of unknown function DUF1554; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1896
symbol: AFM12543.1
gene_biotype: protein_coding
description:
  Hypothetical protein; COGs: COG1373 ATPase (AAA+ superfamily); KEGG: wch:wcw_1773 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1897
symbol: acsA
gene_biotype: protein_coding
description:
  Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.


ensembl_gene_id: Turpa_1899
symbol: AFM12546.1
gene_biotype: protein_coding
description:
  PFAM: DinB family; COGs: COG2318 conserved hypothetical protein; InterPro IPR007837; KEGG: pol:Bpro_1782 DinB; PFAM: DinB; SPTR: DinB family.


ensembl_gene_id: Turpa_1900
symbol: AFM12547.1
gene_biotype: protein_coding
description:
  Acriflavin resistance protein; PFAM: AcrB/AcrD/AcrF family; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: lbf:LBF_4085 efflux pump, AcrB family; PFAM: Acriflavin resistance protein; SPTR: Putative acriflavine resistance protein D; putative transmembrane protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: Turpa_1901
symbol: AFM12548.1
gene_biotype: protein_coding
description:
  PFAM: FecR protein; LysM domain; COGs: COG4254 conserved hypothetical protein; InterPro IPR002482:IPR018392:IPR006860; KEGG: lbf:LBF_1750 LipL45-like lipoprotein; PFAM: Peptidoglycan-binding lysin domain; FecR protein; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1902
symbol: AFM12549.1
gene_biotype: protein_coding
description:
  Phosphoesterase PA-phosphatase related protein; PFAM: PAP2 superfamily; InterPro IPR000326; KEGG: dol:Dole_1413 hypothetical protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SPTR: PAP2 superfamily.


ensembl_gene_id: Turpa_1904
symbol: AFM12551.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Diacylglycerol kinase catalytic domain; TIGRFAM: lipid kinase, YegS/Rv2252/BmrU family; COGs: COG1597 Sphingosine kinase; InterPro IPR001206:IPR005218; KEGG: hoh:Hoch_2148 diacylglycerol kinase; PFAM: Diacylglycerol kinase, catalytic region; SMART: Diacylglycerol kinase, catalytic region; SPTR: Diacylglycerol kinase catalytic region; TIGRFAM: Conserved hypothetical protein CHP00147.


ensembl_gene_id: Turpa_1908
symbol: AFM12555.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF374; COGs: COG2121 conserved hypothetical protein; InterPro IPR007172; KEGG: aar:Acear_2187 hypothetical protein; PFAM: Protein of unknown function DUF374; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1912
symbol: rpmA
gene_biotype: protein_coding
description:
  PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27; COGs: COG0211 Ribosomal protein L27; HAMAP: Ribosomal protein L27; InterPro IPR001684; KEGG: cyn:Cyan7425_0647 50S ribosomal protein L27; PFAM: Ribosomal protein L27; SPTR: 50S ribosomal protein L27; TIGRFAM: Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.


ensembl_gene_id: Turpa_1913
symbol: AFM12560.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial regulatory proteins, tetR family; InterPro IPR001647; KEGG: aba:Acid345_4578 TetR family transcriptional regulator; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family.


ensembl_gene_id: Turpa_1914
symbol: AFM12561.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function DUF115; KEGG: brm:Bmur_1917 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1917
symbol: AFM12564.1
gene_biotype: protein_coding
description:
  Glyoxalase/bleomycin resistance protein/dioxygenase; InterPro IPR004360; KEGG: lbf:LBF_3138 dioxygenase superfamily protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Putative glyoxalase/bleomycin resistance protein or fosfomycin resistance protein FosB.


ensembl_gene_id: Turpa_1918
symbol: AFM12565.1
gene_biotype: protein_coding
description:
  Integral membrane sensor hybrid histidine kinase; PFAM: 7TM diverse intracellular signalling; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661:IPR003594:IPR001789:IPR011623; KEGG: pth:PTH_2386 signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Diverse 7TM receptor, transmembrane region; Signal transduction response regulato [...]


ensembl_gene_id: Turpa_1919
symbol: AFM12566.1
gene_biotype: protein_coding
description:
  Iron sulfur domain-containing, CDGSH-type; PFAM: Iron-binding zinc finger CDGSH type; InterPro IPR006622:IPR018967; KEGG: smm:Smp_157700 hypothetical protein; PFAM: Iron sulphur domain-containing, CDGSH-type; SPTR: Putative glutamate synthetase.


ensembl_gene_id: Turpa_1920
symbol: AFM12567.1
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: chu:CHU_3732 outer membrane protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1923
symbol: AFM12570.1
gene_biotype: protein_coding
description:
  Putative signal transduction histidine kinase; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG4585 Signal transduction histidine kinase; InterPro IPR000014:IPR003594:IPR013767:IPR011712; KEGG: srm:SRM_00855 sensor protein FixL; PFAM: ATP-binding region, ATPase-like; PAS fold; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; SMART: PAS; ATP-binding region, ATPase-like; SPTR: Sensor protein fixL; TIGRFAM: PAS.


ensembl_gene_id: Turpa_1924
symbol: AFM12571.1
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, L [...]


ensembl_gene_id: Turpa_1926
symbol: tal
gene_biotype: protein_coding
description:
  Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.


ensembl_gene_id: Turpa_1927
symbol: AFM12574.1
gene_biotype: protein_coding
description:
  Cobyrinic acid ac-diamide synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; COGs: COG1192 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: lil:LA_0255 ParA; PFAM: Cobyrinic acid a,c-diamide synthase; SPTR: ParA.


ensembl_gene_id: Turpa_1929
symbol: AFM12576.1
gene_biotype: protein_coding
description:
  PFAM: WD40-like Beta Propeller Repeat; COGs: COG0823 Periplasmic component of the Tol biopolymer transport system; InterPro IPR019734:IPR011659:IPR001440; KEGG: lbl:LBL_0811 Tol transport system component; PFAM: WD40-like Beta Propeller; Tetratricopeptide TPR-1; SPTR: Tol transport system component.


ensembl_gene_id: Turpa_1930
symbol: AFM12577.1
gene_biotype: protein_coding
description:
  Protein serine/threonine phosphatase with GAF(s) sensor(s); PFAM: GAF domain; Stage II sporulation protein E (SpoIIE); COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR003018:IPR001932:IPR010822; KEGG: lbj:LBJ_1820 serine phosphatase RsbU, regulator of sigma subunit; PFAM: Sporulation stage II, protein E C-terminal; GAF; SMART: Protein phosphatase 2C-related; GAF; SPTR: Serine phosphatase RsbU, regulator of sigma subunit.


ensembl_gene_id: Turpa_1931
symbol: AFM12578.1
gene_biotype: protein_coding
description:
  KEGG: lbl:LBL_1463 serine phosphatase RsbU, regulator of sigma subunit; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1932
symbol: AFM12579.1
gene_biotype: protein_coding
description:
  Anti-sigma-factor antagonist; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor; COGs: COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); InterPro IPR002645:IPR003658; KEGG: lbf:LBF_3157 anti-sigma factor antagonist; PFAM: Sulphate transporter/antisigma-factor antagonist STAS; SPTR: Anti-sigma factor antagonist; TIGRFAM: Anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family.


ensembl_gene_id: Turpa_1933
symbol: AFM12580.1
gene_biotype: protein_coding
description:
  PFAM: FliG C-terminal domain; COGs: COG1536 Flagellar motor switch protein; InterPro IPR000090; KEGG: tal:Thal_0237 flagellar motor switch protein FliG; PFAM: Flagellar motor switch protein FliG; SPTR: Flagellar motor switch protein FliG.


ensembl_gene_id: Turpa_1934
symbol: AFM12581.1
gene_biotype: protein_coding
description:
  PFAM: Acylphosphatase; COGs: COG1254 Acylphosphatase; HAMAP: Acylphosphatase; InterPro IPR001792; KEGG: syx:SynWH7803_1564 acylphosphatase; PFAM: Acylphosphatase-like; SPTR: Acylphosphatase; manually curated.


ensembl_gene_id: Turpa_1935
symbol: AFM12582.1
gene_biotype: protein_coding
description:
  Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.


ensembl_gene_id: Turpa_1937
symbol: clpX
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease ATP-binding subunit clpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.


ensembl_gene_id: Turpa_1938
symbol: lon
gene_biotype: protein_coding
description:
  ATP-dependent proteinase; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.


ensembl_gene_id: Turpa_1939
symbol: uppP
gene_biotype: protein_coding
description:
  Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.


ensembl_gene_id: Turpa_1943
symbol: hppA
gene_biotype: protein_coding
description:
  Pyrophosphate-energized proton pump; Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force.


ensembl_gene_id: Turpa_1945
symbol: AFM12592.1
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: lil:LA_1205 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70.


ensembl_gene_id: Turpa_1948
symbol: AFM12595.1
gene_biotype: protein_coding
description:
  FAD dependent oxidoreductase; PFAM: Flavin-binding monooxygenase-like; COGs: COG2072 flavoprotein involved in K+ transport; InterPro IPR006076; KEGG: nfa:nfa28620 putative monooxygenase; PFAM: FAD dependent oxidoreductase; SPTR: Monooxygenase.


ensembl_gene_id: Turpa_1949
symbol: AFM12596.1
gene_biotype: protein_coding
description:
  PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; COGs: COG0183 Acetyl-CoA acetyltransferase; KEGG: gur:Gura_4354 thiolase; SPTR: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Turpa_1950
symbol: AFM12597.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF35; PFAM: DUF35 OB-fold domain; COGs: COG1545 nucleic-acid-binding protein containing a Zn-ribbon; InterPro IPR002878; KEGG: lbf:LBF_3281 hypothetical protein; PFAM: Protein of unknown function DUF35; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1951
symbol: AFM12598.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Acyltransferase family; KEGG: ctc:CTC00459 hypothetical protein; SPTR: Conserved membrane protein.


ensembl_gene_id: Turpa_1952
symbol: AFM12599.1
gene_biotype: protein_coding
description:
  Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase; COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: hma:rrnAC1954 oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: NAD dependent epimerase/dehydratase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Turpa_1954
symbol: AFM12601.1
gene_biotype: protein_coding
description:
  PFAM: Cell cycle protein; COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182; KEGG: geo:Geob_0779 cell division protein FtsW; PFAM: Cell cycle protein; SPTR: Cell division protein FtsW; Belongs to the SEDS family.


ensembl_gene_id: Turpa_1955
symbol: prfA
gene_biotype: protein_coding
description:
  Bacterial peptide chain release factor 1 (bRF-1); Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.


ensembl_gene_id: Turpa_1956
symbol: AFM12603.1
gene_biotype: protein_coding
description:
  Nucleoside-triphosphatase rdgB; PFAM: Ham1 family; TIGRFAM: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; COGs: COG0127 Xanthosine triphosphate pyrophosphatase; HAMAP: Nucleoside-triphosphatase rdgB; InterPro IPR002637; KEGG: ckn:Calkro_1815 non-canonical purine ntp pyrophosphatase, rdgb/ham1 family; PFAM: Ham1-like protein; SPTR: Nucleoside-triphosphatase.


ensembl_gene_id: Turpa_1957
symbol: AFM12604.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function DUF45; COGs: COG1451 metal-dependent hydrolase; InterPro IPR002725; KEGG: ote:Oter_1480 hypothetical protein; PFAM: Protein of unknown function DUF45; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1958
symbol: AFM12605.1
gene_biotype: protein_coding
description:
  Metallo-beta-lactamase; COGs: COG1234 Metal-dependent hydrolase of the beta-lactamase superfamily III; KEGG: lbl:LBL_0724 metallo-beta-lactamase; SPTR: Metallo-beta-lactamase.


ensembl_gene_id: Turpa_1960
symbol: AFM12607.1
gene_biotype: protein_coding
description:
  AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme; COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming); InterPro IPR000873; KEGG: lbf:LBF_1590 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase; SPTR: Putative long-chain-fatty-acid CoA ligase.


ensembl_gene_id: Turpa_1961
symbol: AFM12608.1
gene_biotype: protein_coding
description:
  COGs: COG4995 conserved hypothetical protein; KEGG: lbl:LBL_0292 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1962
symbol: AFM12609.1
gene_biotype: protein_coding
description:
  PFAM: Phosphorylase superfamily; InterPro IPR000845; KEGG: cje:Cj1712 hypothetical protein; PFAM: Nucleoside phosphorylase; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1963
symbol: AFM12610.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF165; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.


ensembl_gene_id: Turpa_1964
symbol: AFM12611.1
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function (DUF811); InterPro IPR008529; KEGG: bmj:BMULJ_01469 hypothetical protein; PFAM: Protein of unknown function DUF811; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1967
symbol: AFM12614.1
gene_biotype: protein_coding
description:
  PFAM: FecR protein; KEGG: lic:LIC20185 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1968
symbol: AFM12615.1
gene_biotype: protein_coding
description:
  PFAM: Putative modulator of DNA gyrase; COGs: COG0312 Zn-dependent protease and their inactivated homologs; InterPro IPR002510; KEGG: peptidase U62 modulator of DNA gyrase; PFAM: Peptidase U62, modulator of DNA gyrase; SPTR: Peptidase U62 modulator of DNA gyrase.


ensembl_gene_id: Turpa_1970
symbol: AFM12617.1
gene_biotype: protein_coding
description:
  23S rRNA m(2)A-2503 methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs.


ensembl_gene_id: Turpa_1971
symbol: leuB
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.


ensembl_gene_id: Turpa_1972
symbol: AFM12619.1
gene_biotype: protein_coding
description:
  D-alanine--D-alanine ligase domain protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.


ensembl_gene_id: Turpa_1973
symbol: AFM12620.1
gene_biotype: protein_coding
description:
  PFAM: Uncharacterized protein conserved in bacteria (DUF2248); KEGG: ote:Oter_2161 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1974
symbol: AFM12621.1
gene_biotype: protein_coding
description:
  PFAM: Aldo/keto reductase family; COGs: COG0656 Aldo/keto reductase related to diketogulonate reductase; InterPro IPR001395; KEGG: lbf:LBF_2376 aldo/keto reductase; PFAM: Aldo/keto reductase; SPTR: 2,5-diketo-D-gluconic acid reductase A.


ensembl_gene_id: Turpa_1975
symbol: AFM12622.1
gene_biotype: protein_coding
description:
  Amino acid/polyamine/organocation transporter, APC superfamily; PFAM: Amino acid permease; COGs: COG0531 Amino acid transporter; InterPro IPR004841; KEGG: amino acid permease-associated region; PFAM: Amino acid permease-associated region; SPTR: Amino acid permease-associated region; TC 2.A.3.


ensembl_gene_id: Turpa_1977
symbol: prfB
gene_biotype: protein_coding
description:
  Bacterial peptide chain release factor 2 (bRF-2); Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.


ensembl_gene_id: Turpa_1979
symbol: fhs
gene_biotype: protein_coding
description:
  PFAM: Formate--tetrahydrofolate ligase; COGs: COG2759 Formyltetrahydrofolate synthetase; HAMAP: Formate-tetrahydrofolate ligase, FTHFS; InterPro IPR000559; KEGG: Formate--tetrahydrofolate ligase; PFAM: Formate-tetrahydrofolate ligase, FTHFS; SPTR: Formate--tetrahydrofolate ligase.


ensembl_gene_id: Turpa_1982
symbol: AFM12629.1
gene_biotype: protein_coding
description:
  Cl- channel voltage-gated family protein; PFAM: Voltage gated chloride channel; COGs: COG0038 Chloride channel protein EriC; InterPro IPR001807; KEGG: psn:Pedsa_3649 Cl-channel voltage-gated family protein; PFAM: Chloride channel, voltage gated; SPTR: Cl-channel voltage-gated family protein.


ensembl_gene_id: Turpa_1984
symbol: AFM12631.1
gene_biotype: protein_coding
description:
  Adenylate/guanylate cyclase; PFAM: 2Fe-2S iron-sulfur cluster binding domain; Adenylate and Guanylate cyclase catalytic domain; COGs: COG2114 Adenylate cyclase family 3 (some protein contain HAMP domain); InterPro IPR001054:IPR001041; KEGG: hau:Haur_1502 adenylate/guanylate cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; Ferredoxin; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase; SPTR: Adenylate/guanylate cyclase.


ensembl_gene_id: Turpa_1986
symbol: AFM12633.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Predicted metal-dependent hydrolase; COGs: COG3687 metal-dependent hydrolase; InterPro IPR016516; KEGG: hoh:Hoch_5371 hypothetical protein; PFAM: Uncharacterised conserved protein UCP07580; SPTR: Uncharacterized conserved protein UCP07580.


ensembl_gene_id: Turpa_1987
symbol: AFM12634.1
gene_biotype: protein_coding
description:
  PFAM: Amidase; COGs: COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase; InterPro IPR000120; KEGG: maq:Maqu_2108 amidase; PFAM: Amidase; SPTR: Amidase; Belongs to the amidase family.


ensembl_gene_id: Turpa_1988
symbol: AFM12635.1
gene_biotype: protein_coding
description:
  KEGG: dak:DaAHT2_0826 CO dehydrogenase/acetyl-CoA synthase delta subunit, TIM barrel; SPTR: Putative uncharacterized protein FAP46.


ensembl_gene_id: Turpa_1989
symbol: AFM12636.1
gene_biotype: protein_coding
description:
  Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: gvi:glr0293 carbonyl reductase; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Glr0293 protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Turpa_1991
symbol: AFM12638.1
gene_biotype: protein_coding
description:
  Methyltransferase type 11; PFAM: Methyltransferase domain; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: sen:SACE_3761 putative methyltransferase; PFAM: Methyltransferase type 11; SPTR: Putative methyltransferase.


ensembl_gene_id: Turpa_1993
symbol: AFM12640.1
gene_biotype: protein_coding
description:
  GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family; InterPro IPR000182; KEGG: cyj:Cyan7822_3304 GCN5-like N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase.


ensembl_gene_id: Turpa_1994
symbol: AFM12641.1
gene_biotype: protein_coding
description:
  PFAM: Fatty acid desaturase; InterPro IPR005804; KEGG: mxa:MXAN_6958 fatty acid desaturase family protein; PFAM: Fatty acid desaturase, type 1; SPTR: Fatty acid desaturase family protein.


ensembl_gene_id: Turpa_1995
symbol: AFM12642.1
gene_biotype: protein_coding
description:
  UPF0234 protein yajQ; PFAM: Protein of unknown function (DUF520); COGs: COG1666 conserved hypothetical protein; HAMAP: UPF0234 protein yajQ; InterPro IPR007551; KEGG: bae:BATR1942_03145 putative nucleotide-binding protein; PFAM: Protein of unknown function DUF520; SPTR: UPF0234 protein BATR1942_03145; Belongs to the UPF0234 family.


ensembl_gene_id: Turpa_1996
symbol: argJ
gene_biotype: protein_coding
description:
  N-acetylglutamate synthase, glutamate N-acetyltransferase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.


ensembl_gene_id: Turpa_1998
symbol: AFM12645.1
gene_biotype: protein_coding
description:
  Sulphatase-modifying factor protein; PFAM: Formylglycine-generating sulfatase enzyme; COGs: COG1262 conserved hypothetical protein; InterPro IPR005532; KEGG: lbf:LBF_0067 hypothetical protein; PFAM: Sulphatase-modifying factor; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_1999
symbol: AFM12646.1
gene_biotype: protein_coding
description:
  PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16); COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765:IPR007863; KEGG: nde:NIDE4126 putative M16 family Zn-dependent peptidase; PFAM: Peptidase M16, N-terminal; Peptidase M16, C-terminal; SPTR: Peptidase M16 domain protein; Belongs to the peptidase M16 family.


ensembl_gene_id: Turpa_2000
symbol: pnp
gene_biotype: protein_coding
description:
  Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.


ensembl_gene_id: Turpa_2001
symbol: rpsO
gene_biotype: protein_coding
description:
  SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.


ensembl_gene_id: Turpa_2006
symbol: AFM12652.1
gene_biotype: protein_coding
description:
  Phosphopentomutase; PFAM: Metalloenzyme superfamily; TIGRFAM: phosphopentomutase; COGs: COG1015 Phosphopentomutase; InterPro IPR013553:IPR006124; KEGG: tmt:Tmath_0520 phosphopentomutase; SPTR: Phosphopentomutase.


ensembl_gene_id: Turpa_2007
symbol: AFM12653.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Cytochrome c; KEGG: ppr:PBPRB0863 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2008
symbol: mltG
gene_biotype: protein_coding
description:
  Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.


ensembl_gene_id: Turpa_2009
symbol: AFM12655.1
gene_biotype: protein_coding
description:
  PFAM: Transglycosylase SLT domain; COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains); InterPro IPR008258; KEGG: sus:Acid_2710 lytic transglycosylase, catalytic; PFAM: Lytic transglycosylase-like, catalytic; SPTR: Lytic transglycosylase, catalytic.


ensembl_gene_id: Turpa_2010
symbol: AFM12656.1
gene_biotype: protein_coding
description:
  PFAM: Patatin-like phospholipase; Cyclic nucleotide-binding domain; COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; InterPro IPR000595:IPR002641; KEGG: lbf:LBF_0153 esterase; PFAM: Patatin; Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; SPTR: Putative cAMP-binding protein.


ensembl_gene_id: Turpa_2012
symbol: AFM12658.1
gene_biotype: protein_coding
description:
  PFAM: Yqey-like protein; InterPro IPR019004; KEGG: gvi:gll0226 hypothetical protein; SPTR: Gll0226 protein.


ensembl_gene_id: Turpa_2013
symbol: AFM12659.1
gene_biotype: protein_coding
description:
  Metal dependent phosphohydrolase; PFAM: GAF domain; COGs: COG2206 HD-GYP domain; InterPro IPR003018:IPR003607; KEGG: lbi:LEPBI_I1194 hypothetical protein; PFAM: GAF; SMART: GAF; Metal-dependent phosphohydrolase, HD region; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2014
symbol: AFM12660.1
gene_biotype: protein_coding
description:
  KEGG: hau:Haur_2318 AraC family transcriptional regulator; SPTR: Transcriptional regulator, AraC family; manually curated.


ensembl_gene_id: Turpa_2019
symbol: AFM12665.1
gene_biotype: protein_coding
description:
  Transcriptional modulator of MazE/toxin, MazF; Toxic component of a type II toxin-antitoxin (TA) system.


ensembl_gene_id: Turpa_2020
symbol: AFM12666.1
gene_biotype: protein_coding
description:
  SpoVT/AbrB domain-containing protein; PFAM: SpoVT / AbrB like domain; InterPro IPR007159; KEGG: lbl:LBL_2676 proteic killer gene system protein, suppressor of inhibitory function of MazF; PFAM: Transcription regulator AbrB/SpoV, predicted; SPTR: Proteic killer gene system protein, suppressor of inhibitory function of MazF.


ensembl_gene_id: Turpa_2021
symbol: AFM12667.1
gene_biotype: protein_coding
description:
  GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family; COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182; KEGG: sro:Sros_4065 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2025
symbol: AFM12671.1
gene_biotype: protein_coding
description:
  PFAM: Peptidase family M23; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: cao:Celal_3014 peptidase M23; PFAM: Peptidase M23; SPTR: Membrane metalloendopeptidase.


ensembl_gene_id: Turpa_2027
symbol: AFM12673.1
gene_biotype: protein_coding
description:
  Thiazole biosynthesis family protein; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.


ensembl_gene_id: Turpa_2029
symbol: AFM12675.1
gene_biotype: protein_coding
description:
  Protein serine/threonine phosphatase; PFAM: Stage II sporulation protein E (SpoIIE); COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR001932:IPR010822; KEGG: hmo:HM1_2362 response regulator receiver modulated serine phosphatase; PFAM: Sporulation stage II, protein E C-terminal; SMART: Protein phosphatase 2C-related; SPTR: Response regulator receiver modulated serine phosphatase.


ensembl_gene_id: Turpa_2031
symbol: AFM12677.1
gene_biotype: protein_coding
description:
  Helicase domain-containing protein; PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit; TIGRFAM: DNA repair helicase rad25; COGs: COG1061 DNA or RNA helicase of superfamily II; InterPro IPR014001:IPR001650:IPR006935; KEGG: lbf:LBF_2464 DNA or RNA helicase of superfamily II; PFAM: DNA/RNA helicase, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: Putative DNA repair helicase.


ensembl_gene_id: Turpa_2034
symbol: AFM12680.1
gene_biotype: protein_coding
description:
  PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain; COGs: COG0277 FAD/FMN-containing dehydrogenase; InterPro IPR006094:IPR004113; KEGG: lbf:LBF_4037 alkylglycerone-phosphate synthase; PFAM: FAD linked oxidase, N-terminal; FAD-linked oxidase, C-terminal; SPTR: Putative alkyldihydroxyacetonephosphate synthase.


ensembl_gene_id: Turpa_2035
symbol: AFM12681.1
gene_biotype: protein_coding
description:
  Integral membrane sensor hybrid histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661:IPR003594:IPR001789; KEGG: geb:GM18_0217 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, d [...]


ensembl_gene_id: Turpa_2036
symbol: AFM12682.1
gene_biotype: protein_coding
description:
  PFAM: Glycosyltransferase family 9 (heptosyltransferase); TIGRFAM: lipopolysaccharide heptosyltransferase II; COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: cte:CT2137 heptosyltransferase; PFAM: Glycosyl transferase, family 9; SPTR: Heptosyltransferase.


ensembl_gene_id: Turpa_2037
symbol: tmk
gene_biotype: protein_coding
description:
  Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.


ensembl_gene_id: Turpa_2038
symbol: AFM12684.1
gene_biotype: protein_coding
description:
  AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme; COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming); InterPro IPR000873; KEGG: lic:LIC20074 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase; SPTR: Long-chain-fatty-acid CoA ligase.


ensembl_gene_id: Turpa_2039
symbol: AFM12685.1
gene_biotype: protein_coding
description:
  Glucose-1-phosphate thymidylyltransferase; TIGRFAM: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase; COGs: COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); InterPro IPR001451; KEGG: lic:LIC10444 glucose-1-phosphate thymidylyltransferase; SPTR: Glucose-1-phosphate thymidylyltransferase.


ensembl_gene_id: Turpa_2040
symbol: AFM12686.1
gene_biotype: protein_coding
description:
  PFAM: Cytidylyltransferase family; COGs: COG0170 Dolichol kinase; InterPro IPR000374; KEGG: lbf:LBF_1660 dolichol kinase; PFAM: Phosphatidate cytidylyltransferase; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2041
symbol: AFM12687.1
gene_biotype: protein_coding
description:
  PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor; InterPro IPR002645:IPR003658; KEGG: tpp:TPASS_0220 anti-sigma F factor antagonist; PFAM: Sulphate transporter/antisigma-factor antagonist STAS; SPTR: Anti-sigma factor antagonist; TIGRFAM: Anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family.


ensembl_gene_id: Turpa_2042
symbol: AFM12688.1
gene_biotype: protein_coding
description:
  PFAM: Adenylate and Guanylate cyclase catalytic domain; COGs: COG2114 Adenylate cyclase family 3 (some protein contain HAMP domain); InterPro IPR001054; KEGG: lbf:LBF_2448 adenylate/guanylate cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase; SPTR: Putative uncharacterized protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.


ensembl_gene_id: Turpa_2043
symbol: AFM12689.1
gene_biotype: protein_coding
description:
  UPF0082 protein yeeN; PFAM: Domain of unknown function DUF28; TIGRFAM: DNA-binding regulatory protein, YebC/PmpR family; COGs: COG0217 conserved hypothetical protein; HAMAP: Protein of unknown function DUF28; InterPro IPR002876; KEGG: dak:DaAHT2_1209 protein of unknown function DUF28; PFAM: Protein of unknown function DUF28; SPTR: UPF0082 protein DaAHT2_1209; TIGRFAM: Protein of unknown function DUF28; manually curated.


ensembl_gene_id: Turpa_2045
symbol: AFM12691.1
gene_biotype: protein_coding
description:
  PilT protein domain protein; PFAM: PIN domain; InterPro IPR002716; KEGG: slp:Slip_0013 nucleic acid-binding protein; PFAM: PilT protein, N-terminal; SPTR: Nucleic acid-binding protein.


ensembl_gene_id: Turpa_2046
symbol: proS
gene_biotype: protein_coding
description:
  prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...]


ensembl_gene_id: Turpa_2047
symbol: AFM12693.1
gene_biotype: protein_coding
description:
  PFAM: Adenylate and Guanylate cyclase catalytic domain; COGs: COG2114 Adenylate cyclase family 3 (some protein contain HAMP domain); InterPro IPR001054; KEGG: lbf:LBF_2877 adenylate cyclase family protein; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase; SPTR: PAS fold family.


ensembl_gene_id: Turpa_2048
symbol: AFM12694.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function (DUF2937); KEGG: ote:Oter_1694 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2049
symbol: AFM12695.1
gene_biotype: protein_coding
description:
  Adenylate/guanylate cyclase with integral membrane sensor; PFAM: Adenylate and Guanylate cyclase catalytic domain; HAMP domain; COGs: COG2114 Adenylate cyclase family 3 (some protein contain HAMP domain); InterPro IPR003660:IPR001054; KEGG: mgm:Mmc1_1583 adenylate/guanylate cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; HAMP linker domain; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase; HAMP linker domain; SPTR: Adenylate/guanylate cyclase.


ensembl_gene_id: Turpa_2050
symbol: AFM12696.1
gene_biotype: protein_coding
description:
  PFAM: Glutamine amidotransferases class-II; COGs: COG0121 glutamine amidotransferase; InterPro IPR000583; KEGG: lbl:LBL_0550 glutamine amidotransferase; PFAM: Glutamine amidotransferase, class-II; SPTR: Glutamine amidotransferase.


ensembl_gene_id: Turpa_2051
symbol: AFM12697.1
gene_biotype: protein_coding
description:
  Adenylate/guanylate cyclase with integral membrane sensor; PFAM: Adenylate and Guanylate cyclase catalytic domain; HAMP domain; COGs: COG2114 Adenylate cyclase family 3 (some protein contain HAMP domain); InterPro IPR003660:IPR001054; KEGG: lbf:LBF_0570 adenylate cyclase-like protein; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; HAMP linker domain; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase; HAMP linker domain; SPTR: Putative adenylate cyclase; putative membrane protein; putative signal peptide.


ensembl_gene_id: Turpa_2052
symbol: AFM12698.1
gene_biotype: protein_coding
description:
  ApaG domain protein; PFAM: Protein of unknown function (DUF525); COGs: COG2967 Uncharacterized protein affecting Mg2+/Co2+ transport; InterPro IPR007474; KEGG: mxa:MXAN_1536 ApaG protein; PFAM: ApaG; SPTR: Protein ApaG.


ensembl_gene_id: Turpa_2053
symbol: AFM12699.1
gene_biotype: protein_coding
description:
  PFAM: rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC; COGs: COG1792 Cell shape-determining protein; InterPro IPR007221:IPR005223; KEGG: lbf:LBF_2964 rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; SPTR: Rod shape-determining protein MreC; TIGRFAM: Rod shape-determining protein MreC, subtype.


ensembl_gene_id: Turpa_2054
symbol: AFM12700.1
gene_biotype: protein_coding
description:
  PFAM: rod shape-determining protein MreD; TIGRFAM: rod shape-determining protein MreD; InterPro IPR007227; KEGG: lic:LIC11260 hypothetical protein; SPTR: Cell shape-determining protein; TIGRFAM: Cell shape-determining protein MreD.


ensembl_gene_id: Turpa_2055
symbol: AFM12701.1
gene_biotype: protein_coding
description:
  Penicillin-binding protein 2; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; TIGRFAM: penicillin-binding protein 2; COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR005311:IPR001460:IPR017790; KEGG: lbl:LBL_1957 cell division protein FtsI/penicillin-binding protein; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; SPTR: Cell division protein FtsI/penicillin-binding protein; TIGRFAM: Penicillin-binding protein 2.


ensembl_gene_id: Turpa_2056
symbol: AFM12702.1
gene_biotype: protein_coding
description:
  PFAM: Cell cycle protein; TIGRFAM: rod shape-determining protein RodA; COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182; KEGG: lbf:LBF_2967 rod shape-determining protein; PFAM: Cell cycle protein; SPTR: Rod shape-determining protein; putative membrane protein; Belongs to the SEDS family.


ensembl_gene_id: Turpa_2058
symbol: AFM12704.1
gene_biotype: protein_coding
description:
  Surface antigen (D15); COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR000184; KEGG: lbf:LBF_0540 OMA87-like protein; PFAM: Bacterial surface antigen (D15); SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2061
symbol: AFM12707.1
gene_biotype: protein_coding
description:
  PFAM: Diacylglycerol kinase catalytic domain; COGs: COG1597 Sphingosine kinase; InterPro IPR001206; KEGG: sen:SACE_3961 secreted protein; PFAM: Diacylglycerol kinase, catalytic region; SPTR: Secreted protein.


ensembl_gene_id: Turpa_2062
symbol: AFM12708.1
gene_biotype: protein_coding
description:
  PFAM: MatE; TIGRFAM: putative efflux protein, MATE family; COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: dap:Dacet_1868 MATE efflux family protein; PFAM: Multi antimicrobial extrusion protein MatE; SPTR: MATE efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein MatE.


ensembl_gene_id: Turpa_2063
symbol: fmt
gene_biotype: protein_coding
description:
  Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.


ensembl_gene_id: Turpa_2064
symbol: hemH
gene_biotype: protein_coding
description:
  Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.


ensembl_gene_id: Turpa_2065
symbol: serC
gene_biotype: protein_coding
description:
  Phosphoserine aminotransferase apoenzyme; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.


ensembl_gene_id: Turpa_2067
symbol: AFM12713.1
gene_biotype: protein_coding
description:
  PFAM: 7TM diverse intracellular signalling; Stage II sporulation protein E (SpoIIE); InterPro IPR001932:IPR011623:IPR010822; KEGG: lbl:LBL_2835 TPR repeat-containing protein; PFAM: Sporulation stage II, protein E C-terminal; Diverse 7TM receptor, transmembrane region; SMART: Protein phosphatase 2C-related; SPTR: TPR-repeat-containing protein.


ensembl_gene_id: Turpa_2068
symbol: AFM12714.1
gene_biotype: protein_coding
description:
  PFAM: Response regulator receiver domain; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: cag:Cagg_3134 multi-sensor signal transduction histidine kinase; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Multi-sensor signal transduction histidine kinase.


ensembl_gene_id: Turpa_2069
symbol: AFM12715.1
gene_biotype: protein_coding
description:
  PFAM: ABC transporter; TIGRFAM: ATP-binding cassette protein, ChvD family; COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003593:IPR003439; KEGG: bfs:BF2043 putative ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: Putative uncharacterized protein; TIGRFAM: ATP-binding cassette protein, ChvD family.


ensembl_gene_id: Turpa_2071
symbol: AFM12717.1
gene_biotype: protein_coding
description:
  PFAM: 7TM-HD extracellular; HD domain; 7TM receptor with intracellular HD hydrolase; TIGRFAM: uncharacterized domain HDIG; COGs: COG1480 membrane-associated HD superfamily hydrolase; InterPro IPR003607:IPR011621:IPR006674:IPR006675; KEGG: lbl:LBL_1252 HD superfamily hydrolase; PFAM: Metal-dependent phosphohydrolase, 7TM intracellular region; Metal-dependent phosphohydrolase, HD region, subdomain; SMART: Metal-dependent phosphohydrolase, HD region; SPTR: Membrane-associated HD superfamily hydrolase; TIGRFAM: HDIG.


ensembl_gene_id: Turpa_2076
symbol: icmF
gene_biotype: protein_coding
description:
  methylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.


ensembl_gene_id: Turpa_2077
symbol: AFM12723.1
gene_biotype: protein_coding
description:
  PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; COGs: COG0558 Phosphatidylglycerophosphate synthase; InterPro IPR000462:IPR004570; KEGG: lbl:LBL_2152 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: Turpa_2079
symbol: AFM12725.1
gene_biotype: protein_coding
description:
  PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16); COGs: COG0612 Zn-dependent peptidase; InterPro IPR007863; KEGG: pca:Pcar_1980 peptidase; PFAM: Peptidase M16, C-terminal; SPTR: Peptidase, putative.


ensembl_gene_id: Turpa_2080
symbol: AFM12726.1
gene_biotype: protein_coding
description:
  PFAM: FecR protein; KEGG: lic:LIC20112 periplasmic protein, LipL45 homologue; SPTR: LipL45-related protein.


ensembl_gene_id: Turpa_2084
symbol: AFM12730.1
gene_biotype: protein_coding
description:
  KEGG: rrs:RoseRS_4371 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated.


ensembl_gene_id: Turpa_2087
symbol: AFM12733.1
gene_biotype: protein_coding
description:
  PFAM: Adenylate and Guanylate cyclase catalytic domain; Response regulator receiver domain; COGs: COG2114 Adenylate cyclase family 3 (some protein contain HAMP domain); InterPro IPR001789:IPR001054; KEGG: adenylate/guanylate cyclase; PFAM: Signal transduction response regulator, receiver region; Adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Signal transduction response regulator, receiver region; Adenylyl cyclase class-3/4/guanylyl cyclase; SPTR: Adenylyl cyclase class-3/4/guanylyl cyclase.


ensembl_gene_id: Turpa_2088
symbol: AFM12734.1
gene_biotype: protein_coding
description:
  PFAM: HDOD domain; COGs: COG1639 signal transduction protein; InterPro IPR013976; KEGG: ddf:DEFDS_0324 metal dependent phosphohydrolase; PFAM: Metal-dependent hydrolase HDOD; SPTR: Metal dependent phosphohydrolase.


ensembl_gene_id: Turpa_2089
symbol: AFM12735.1
gene_biotype: protein_coding
description:
  PFAM: Sulfate transporter family; COGs: COG0659 Sulfate permease and related transporter (MFS superfamily); InterPro IPR011547; KEGG: rbi:RB2501_07590 sulfate transporter; PFAM: Sulphate transporter; SPTR: Sulfate transporter.


ensembl_gene_id: Turpa_2090
symbol: AFM12736.1
gene_biotype: protein_coding
description:
  PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter; COGs: COG0053 Co/Zn/Cd cation transporter; InterPro IPR002524; KEGG: bba:Bd0368 cation efflux system protein; PFAM: Cation efflux protein; SPTR: Cation efflux system protein; TIGRFAM: Cation efflux protein; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.


ensembl_gene_id: Turpa_2091
symbol: AFM12737.1
gene_biotype: protein_coding
description:
  PFAM: YaeQ protein; COGs: COG4681 conserved hypothetical protein; InterPro IPR009822; KEGG: hch:HCH_00909 hypothetical protein; PFAM: YaeQ; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2092
symbol: AFM12738.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: ava:Ava_3187 Crp/FNR family transcriptional regulator; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; SPTR: Cyclic nucleotide-binding domain protein.


ensembl_gene_id: Turpa_2093
symbol: AFM12739.1
gene_biotype: protein_coding
description:
  PFAM: Copper resistance protein D; KEGG: ajs:Ajs_3166 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2094
symbol: AFM12740.1
gene_biotype: protein_coding
description:
  Hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain; TIGRFAM: hemerythrin-like metal-binding domain; COGs: COG2703 Hemerythrin; InterPro IPR012312:IPR012827; KEGG: sus:Acid_5914 hemerythrin-like metal-binding protein; PFAM: Haemerythrin/HHE cation-binding motif; SPTR: Hemerythrin-like metal-binding protein; TIGRFAM: Haemerythrin-like, metal-binding.


ensembl_gene_id: Turpa_2095
symbol: AFM12741.1
gene_biotype: protein_coding
description:
  Hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain; TIGRFAM: hemerythrin-like metal-binding domain; COGs: COG2703 Hemerythrin; InterPro IPR012312:IPR012827; KEGG: dak:DaAHT2_1320 hemerythrin-like metal-binding protein; PFAM: Haemerythrin/HHE cation-binding motif; SPTR: Hemerythrin-like metal-binding protein; TIGRFAM: Haemerythrin-like, metal-binding.


ensembl_gene_id: Turpa_2096
symbol: AFM12742.1
gene_biotype: protein_coding
description:
  PFAM: NnrS protein; COGs: COG3213 Uncharacterized protein involved in response to NO; InterPro IPR010266; KEGG: lbf:LBF_2851 nitric oxide response protein; PFAM: NnrS; SPTR: Putative heme-Cu protein NnrS (Nos operon region); putative membrane protein.


ensembl_gene_id: Turpa_2097
symbol: AFM12743.1
gene_biotype: protein_coding
description:
  PFAM: SCO1/SenC; COGs: COG1999 Uncharacterized protein SCO1/SenC/PrrC involved in biogenesis of respiratory and photosynthetic systems; InterPro IPR003782; KEGG: fjo:Fjoh_2416 electron transport protein SCO1/SenC; PFAM: Copper chaperone SCO1/SenC; SPTR: Electron transport protein SCO1/SenC.


ensembl_gene_id: Turpa_2098
symbol: AFM12744.1
gene_biotype: protein_coding
description:
  Sulphatase-modifying factor protein; PFAM: Formylglycine-generating sulfatase enzyme; COGs: COG1262 conserved hypothetical protein; InterPro IPR005532; KEGG: lbf:LBF_1029 hypothetical protein; PFAM: Sulphatase-modifying factor; SPTR: Putative uncharacterized protein; manually curated.


ensembl_gene_id: Turpa_2099
symbol: AFM12745.1
gene_biotype: protein_coding
description:
  Dissimilatory nitrite reductase (NO-forming), copper type apoprotein; PFAM: Multicopper oxidase; Cytochrome c; TIGRFAM: nitrite reductase, copper-containing; COGs: COG2132 Putative multicopper oxidase; InterPro IPR011707:IPR001117:IPR003088:IPR012746; KEGG: lbf:LBF_1028 multicopper oxidase lipoprotein; PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 1; Cytochrome c, class I; SPTR: Copper-containing nitrite reductase (Major outer membrane protein Pan 1); TIGRFAM: Nitrite reductase, copper containing.


ensembl_gene_id: Turpa_2100
symbol: AFM12746.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR001808:IPR000595; KEGG: dpr:Despr_1126 Crp/Fnr family transcriptional regulator; PFAM: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp; SPTR: Transcriptional regulator, Crp/Fnr family.


ensembl_gene_id: Turpa_2101
symbol: AFM12747.1
gene_biotype: protein_coding
description:
  PFAM: DGC domain; COGs: COG4273 conserved hypothetical protein; InterPro IPR014958; KEGG: dia:Dtpsy_2576 dgc domain-containing protein; PFAM: DGC; SPTR: DGC domain protein.


ensembl_gene_id: Turpa_2102
symbol: AFM12748.1
gene_biotype: protein_coding
description:
  Heme A synthase; PFAM: Cytochrome oxidase assembly protein; COGs: COG1612 Uncharacterized protein required for cytochrome oxidase assembly; HAMAP: Heme A synthase; InterPro IPR003780; KEGG: nit:NAL212_1989 heme A synthase; PFAM: Cytochrome oxidase assembly; SPTR: Heme A synthase.


ensembl_gene_id: Turpa_2105
symbol: AFM12751.1
gene_biotype: protein_coding
description:
  PFAM: SCO1/SenC; COGs: COG1999 Uncharacterized protein SCO1/SenC/PrrC involved in biogenesis of respiratory and photosynthetic systems; InterPro IPR003782; KEGG: ilo:IL0764 hypothetical protein; PFAM: Copper chaperone SCO1/SenC; SPTR: Uncharacterized secreted protein of SCO1/SenC/PrrC family.


ensembl_gene_id: Turpa_2106
symbol: AFM12752.1
gene_biotype: protein_coding
description:
  Tetratricopeptide TPR_1 repeat-containing protein; InterPro IPR019734:IPR001440; PFAM: Tetratricopeptide TPR-1.


ensembl_gene_id: Turpa_2107
symbol: AFM12753.1
gene_biotype: protein_coding
description:
  Cytochrome b/b6 domain-containing protein; PFAM: Methyl-viologen-reducing hydrogenase, delta subunit; COGs: COG1290 Cytochrome b subunit of the bc complex; InterPro IPR005797:IPR001450:IPR003813; KEGG: hth:HTH_0156 cytochrome b/b6; PFAM: Cytochrome b/b6, N-terminal; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Methyl-viologen-reducing hydrogenase, delta subunit; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein.


ensembl_gene_id: Turpa_2109
symbol: AFM12755.1
gene_biotype: protein_coding
description:
  PFAM: Cytochrome C and Quinol oxidase polypeptide I; COGs: COG0843 Heme/copper-type cytochrome/quinol oxidase subunit 1; InterPro IPR000883; KEGG: hth:HTH_0153 heme/copper-type cytochrome/quinol oxidase subunit 1; PFAM: Cytochrome c oxidase, subunit I; SPTR: Cytochrome c oxidase subunit I.


ensembl_gene_id: Turpa_2110
symbol: AFM12756.1
gene_biotype: protein_coding
description:
  PFAM: Cytochrome C oxidase subunit II, periplasmic domain; InterPro IPR002429; KEGG: app:CAP2UW1_1791 cytochrome c oxidase subunit II; PFAM: Cytochrome c oxidase subunit II C-terminal; SPTR: Cytochrome c oxidase subunit II.


ensembl_gene_id: Turpa_2112
symbol: AFM12758.1
gene_biotype: protein_coding
description:
  PFAM: Carbonic anhydrase; InterPro IPR001765; KEGG: dde:Dde_2979 carbonic anhydrase-like; PFAM: Carbonic anhydrase; SPTR: Carbonic anhydrase-like protein.


ensembl_gene_id: Turpa_2113
symbol: eno
gene_biotype: protein_coding
description:
  Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.


ensembl_gene_id: Turpa_2115
symbol: trmD
gene_biotype: protein_coding
description:
  tRNA (Guanine37-N(1)-) methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.


ensembl_gene_id: Turpa_2116
symbol: rimM
gene_biotype: protein_coding
description:
  16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.


ensembl_gene_id: Turpa_2117
symbol: AFM12763.1
gene_biotype: protein_coding
description:
  COGs: COG1837 RNA-binding protein (contains KH domain); KEGG: ssm:Spirs_1873 R-binding protein (contains KH domain); SPTR: R-binding protein (Contains KH domain); Belongs to the UPF0109 family.


ensembl_gene_id: Turpa_2118
symbol: rpsP
gene_biotype: protein_coding
description:
  PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16; COGs: COG0228 Ribosomal protein S16; HAMAP: Ribosomal protein S16; InterPro IPR000307; KEGG: llk:LLKF_1693 50S ribosomal protein S16P; PFAM: Ribosomal protein S16; SPTR: 30S ribosomal protein S16; TIGRFAM: Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.


ensembl_gene_id: Turpa_2120
symbol: AFM12766.1
gene_biotype: protein_coding
description:
  HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005834:IPR006402; KEGG: mmw:Mmwyl1_3008 HAD family hydrolase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3.


ensembl_gene_id: Turpa_2123
symbol: AFM12769.1
gene_biotype: protein_coding
description:
  Alpha/beta hydrolase fold containing protein; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: hbo:Hbor_09140 hydrolase or acyltransferase of alpha/beta superfamily; PFAM: Alpha/beta hydrolase fold-1; SPTR: Predicted hydrolase or acyltransferase of alpha/beta superfamily.


ensembl_gene_id: Turpa_2125
symbol: AFM12771.1
gene_biotype: protein_coding
description:
  PFAM: Di-haem cytochrome c peroxidase; COGs: COG1858 Cytochrome c peroxidase; InterPro IPR004852; KEGG: swp:swp_4142 putative cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2126
symbol: AFM12772.1
gene_biotype: protein_coding
description:
  Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.


ensembl_gene_id: Turpa_2131
symbol: AFM12777.1
gene_biotype: protein_coding
description:
  Ketopantoate reductase ApbA/PanE domain protein; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.


ensembl_gene_id: Turpa_2134
symbol: AFM12780.1
gene_biotype: protein_coding
description:
  Hypothetical protein; InterPro IPR002110; KEGG: cfa:490836 ankyrin repeat and SOCS box-containing 2; SPTR: Ankyrin.


ensembl_gene_id: Turpa_2138
symbol: AFM12784.1
gene_biotype: protein_coding
description:
  PFAM: MaoC like domain; COGs: COG2030 Acyl dehydratase; InterPro IPR002539; KEGG: app:CAP2UW1_2498 MaoC domain-containing protein dehydratase; PFAM: MaoC-like dehydratase; SPTR: MaoC domain protein dehydratase.


ensembl_gene_id: Turpa_2139
symbol: AFM12785.1
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function (DU1801); InterPro IPR014922; KEGG: cpi:Cpin_5750 hypothetical protein; PFAM: Protein of unknown function DUF1801; SPTR: Conserved domain protein.


ensembl_gene_id: Turpa_2140
symbol: AFM12786.1
gene_biotype: protein_coding
description:
  COGs: COG4886 Leucine-rich repeat (LRR) protein; InterPro IPR001611:IPR003591; KEGG: lic:LIC10829 hypothetical protein; PFAM: Leucine-rich repeat; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2141
symbol: AFM12787.1
gene_biotype: protein_coding
description:
  Leucine-rich repeat-containing protein; InterPro IPR001611:IPR003591; KEGG: lic:LIC11097 cytoplasmic membrane protein; PFAM: Leucine-rich repeat; SPTR: Ras family, putative.


ensembl_gene_id: Turpa_2144
symbol: AFM12790.1
gene_biotype: protein_coding
description:
  PFAM: Enoyl-CoA hydratase/isomerase family; COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: lbf:LBF_1328 enoyl-CoA hydratase; PFAM: Crotonase, core; SPTR: Enoyl-CoA hydratase.


ensembl_gene_id: Turpa_2145
symbol: AFM12791.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial protein of unknown function (DUF937); COGs: COG3753 conserved hypothetical protein; InterPro IPR009282; KEGG: bac:BamMC406_1756 hypothetical protein; PFAM: Protein of unknown function DUF937, bacterial; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2147
symbol: AFM12793.1
gene_biotype: protein_coding
description:
  PFAM: Glycosyl transferases group 1; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: bba:Bd1868 putative glycosyltransferase; PFAM: Glycosyl transferase, group 1; SPTR: Putative glycosyltransferase.


ensembl_gene_id: Turpa_2148
symbol: AFM12794.1
gene_biotype: protein_coding
description:
  PFAM: PhoD-like phosphatase; COGs: COG3540 Phosphodiesterase/alkaline phosphatase D; KEGG: pbr:PB2503_04747 putative phosphodiesterase/alkaline phosphatase D; SPTR: Putative phosphodiesterase/alkaline phosphatase D.


ensembl_gene_id: Turpa_2149
symbol: AFM12795.1
gene_biotype: protein_coding
description:
  Anion transporter; PFAM: Sodium:sulfate symporter transmembrane region; TIGRFAM: anion transporter; COGs: COG0471 Di- and tricarboxylate transporter; InterPro IPR001898; KEGG: sen:SACE_1612 anion transporter; PFAM: Sodium/sulphate symporter; SPTR: Anion transporter; TIGRFAM: Sodium/sulphate symporter.


ensembl_gene_id: Turpa_2150
symbol: AFM12796.1
gene_biotype: protein_coding
description:
  Na+/Ca+ antiporter, CaCA family; PFAM: Sodium/calcium exchanger protein; TIGRFAM: K+-dependent Na+/Ca+ exchanger related-protein; COGs: COG0530 Ca2+/Na+ antiporter; InterPro IPR004837:IPR004481; KEGG: rca:Rcas_3954 CaCA family Na(+)/Ca(+) antiporter; PFAM: Sodium/calcium exchanger membrane region; SPTR: Na+/Ca+ antiporter, CaCA family; TIGRFAM: K+-dependent Na+/Ca+ exchanger-like.


ensembl_gene_id: Turpa_2151
symbol: AFM12797.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function, DUF583; COGs: COG1664 Integral membrane protein CcmA involved in cell shape determination; InterPro IPR007607; KEGG: scl:sce0448 hypothetical protein; PFAM: Protein of unknown function DUF583; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2152
symbol: AFM12798.1
gene_biotype: protein_coding
description:
  Exonuclease RecJ; PFAM: DHH family; DHHA1 domain; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; COGs: COG0608 Single-stranded DNA-specific exonuclease; InterPro IPR001667:IPR003156; KEGG: lil:LA_2999 single-stranded DNA exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1; SPTR: Single-stranded DNA exonuclease.


ensembl_gene_id: Turpa_2154
symbol: AFM12800.1
gene_biotype: protein_coding
description:
  PFAM: MotA/TolQ/ExbB proton channel family; COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: sur:STAUR_7246 MotA/TolQ/ExbB proton channel family protein; PFAM: MotA/TolQ/ExbB proton channel; SPTR: ExbB; TC 2.C.1.1.1.


ensembl_gene_id: Turpa_2155
symbol: AFM12801.1
gene_biotype: protein_coding
description:
  PFAM: Biopolymer transport protein ExbD/TolR; COGs: COG0848 Biopolymer transport protein; InterPro IPR003400; KEGG: lbf:LBF_2915 ExbD-like biopolymer transport protein; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Biopolymer transport ExbD protein; TC 2.C.1.1.1.


ensembl_gene_id: Turpa_2156
symbol: AFM12802.1
gene_biotype: protein_coding
description:
  TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain; InterPro IPR003538:IPR006260; KEGG: rmr:Rmar_2640 TonB family protein; PFAM: Gram-negative bacterial tonB protein; SPTR: TonB family protein; TIGRFAM: TonB, C-terminal.


ensembl_gene_id: Turpa_2157
symbol: AFM12803.1
gene_biotype: protein_coding
description:
  PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor; COGs: COG4774 Outer membrane receptor for monomeric catechols; InterPro IPR012910:IPR000531:IPR010105; KEGG: mmb:Mmol_1914 TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor.


ensembl_gene_id: Turpa_2158
symbol: AFM12804.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Nickel uptake substrate-specific transmembrane region; KEGG: mmb:Mmol_1913 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2161
symbol: AFM12806.1
gene_biotype: protein_coding
description:
  tRNA-U16,U17-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.


ensembl_gene_id: Turpa_2163
symbol: AFM12808.1
gene_biotype: protein_coding
description:
  PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); COGs: COG3696 Putative silver efflux pump; InterPro IPR001036:IPR004763; KEGG: lbf:LBF_3033 cation transporter; PFAM: Acriflavin resistance protein; SPTR: Putative cation efflux system protein; putative membrane protein; TIGRFAM: Heavy metal efflux pump CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: Turpa_2164
symbol: AFM12809.1
gene_biotype: protein_coding
description:
  PFAM: Outer membrane efflux protein; KEGG: lbf:LBF_3035 TolC-like protein; SPTR: Putative outer membrane protein; putative signal peptide.


ensembl_gene_id: Turpa_2165
symbol: AFM12810.1
gene_biotype: protein_coding
description:
  NAD-dependent epimerase/dehydratase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: mfa:Mfla_2045 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase/dehydratase.


ensembl_gene_id: Turpa_2166
symbol: murF
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.


ensembl_gene_id: Turpa_2167
symbol: AFM12812.1
gene_biotype: protein_coding
description:
  dTDP-glucose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-glucose 4,6-dehydratase; COGs: COG1088 dTDP-D-glucose 4 6-dehydratase; InterPro IPR001509:IPR005888; KEGG: emi:Emin_0861 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.


ensembl_gene_id: Turpa_2168
symbol: AFM12813.1
gene_biotype: protein_coding
description:
  dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.


ensembl_gene_id: Turpa_2169
symbol: AFM12814.1
gene_biotype: protein_coding
description:
  dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.


ensembl_gene_id: Turpa_2170
symbol: AFM12815.1
gene_biotype: protein_coding
description:
  Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.


ensembl_gene_id: Turpa_2172
symbol: AFM12817.1
gene_biotype: protein_coding
description:
  PFAM: Cytochrome C assembly protein; COGs: COG0755 ABC-type transport system involved in cytochrome c biogenesis permease component; InterPro IPR002541; KEGG: ttr:Tter_0238 cytochrome c assembly protein; PFAM: Cytochrome c assembly protein; SPTR: Cytochrome c assembly protein.


ensembl_gene_id: Turpa_2173
symbol: mtnA
gene_biotype: protein_coding
description:
  Methylthioribose-1-phosphate isomerase; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).


ensembl_gene_id: Turpa_2174
symbol: lysS
gene_biotype: protein_coding
description:
  PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial; COGs: COG1190 Lysyl-tRNA synthetase (class II); HAMAP: Lysyl-tRNA synthetase; InterPro IPR004365:IPR004364:IPR002313; KEGG: lil:LA_1995 lysyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; SPTR: Lysyl-tRNA synthetase; TIGRFAM: Lysyl-tRNA synthetase, class II; Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: Turpa_2177
symbol: AFM12822.1
gene_biotype: protein_coding
description:
  COGs: COG2834 Outer membrane lipoprotein-sorting protein; InterPro IPR004564; KEGG: lbf:LBF_1089 outer membrane lipoprotein-sorting protein; PFAM: Outer membrane lipoprotein carrier protein LolA; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2179
symbol: AFM12824.1
gene_biotype: protein_coding
description:
  tRNA synthetase class II (G H P and S); COGs: COG3705 ATP phosphoribosyltransferase involved in histidine biosynthesis; InterPro IPR002314; KEGG: bpr:GBP346_A2287 ATP phosphoribosyltransferase regulatory subunit; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; SPTR: Histidyl-tRNA synthetase 2.


ensembl_gene_id: Turpa_2180
symbol: glyS
gene_biotype: protein_coding
description:
  PFAM: Glycyl-tRNA synthetase beta subunit; TIGRFAM: glycyl-tRNA synthetase, tetrameric type, beta subunit; COGs: COG0751 Glycyl-tRNA synthetase beta subunit; InterPro IPR002311:IPR015944; KEGG: tjr:TherJR_2403 glycyl-tRNA synthetase, beta subunit; PFAM: Glycyl-tRNA synthetase, class IIc, beta subunit, N-terminal; SPTR: Glycyl-tRNA synthetase beta subunit; TIGRFAM: Glycyl-tRNA synthetase, class IIc, beta subunit.


ensembl_gene_id: Turpa_2181
symbol: AFM12826.1
gene_biotype: protein_coding
description:
  PFAM: OsmC-like protein; COGs: COG1765 redox protein regulator of disulfide bond formation; InterPro IPR003718; KEGG: bmj:BMULJ_01324 putative redox protein; PFAM: Peroxiredoxin, OsmC-like protein; SPTR: Putative redox protein.


ensembl_gene_id: Turpa_2183
symbol: AFM12828.1
gene_biotype: protein_coding
description:
  PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484:IPR018485; KEGG: mxa:MXAN_2879 putative xylulokinase; PFAM: Carbohydrate kinase, FGGY, C-terminal; Carbohydrate kinase, FGGY, N-terminal; SPTR: Putative xylulokinase.


ensembl_gene_id: Turpa_2184
symbol: AFM12829.1
gene_biotype: protein_coding
description:
  PFAM: Pyridoxal-dependent decarboxylase conserved domain; COGs: COG0076 Glutamate decarboxylase and related PLP-dependent protein; InterPro IPR002129; KEGG: sur:STAUR_3081 sphingosine-1-phosphate lyase 1; PFAM: Pyridoxal phosphate-dependent decarboxylase; SPTR: Sphingosine-1-phosphate lyase 1.


ensembl_gene_id: Turpa_2185
symbol: AFM12830.1
gene_biotype: protein_coding
description:
  Hypothetical protein; COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold; KEGG: scl:sce9325 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2187
symbol: AFM12832.1
gene_biotype: protein_coding
description:
  Acetyltransferase; PFAM: PGAP1-like protein; COGs: COG1075 acetyltransferase and hydrolase with the alpha/beta hydrolase fold; KEGG: lbf:LBF_0750 acetyltransferase; SPTR: Putative triacylglycerol lipase; putative signal peptide.


ensembl_gene_id: Turpa_2189
symbol: AFM12834.1
gene_biotype: protein_coding
description:
  PFAM: Sialidase, N-terminal domain; Protein of unknown function (DUF1554); InterPro IPR001258:IPR011448:IPR006558; KEGG: lbf:LBF_2981 hypothetical protein; PFAM: Protein of unknown function DUF1554; NHL repeat; SMART: LamG-like jellyroll fold; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2190
symbol: AFM12835.1
gene_biotype: protein_coding
description:
  PFAM: Laminin G domain; InterPro IPR012680:IPR006558; KEGG: lbf:LBF_2981 hypothetical protein; PFAM: Laminin G, subdomain 2; SMART: LamG-like jellyroll fold; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2194
symbol: AFM12839.1
gene_biotype: protein_coding
description:
  PFAM: Pentaxin family; Fibronectin type III domain; InterPro IPR003961:IPR001258; KEGG: lbf:LBF_2981 hypothetical protein; PFAM: Fibronectin, type III; NHL repeat; SMART: Fibronectin, type III; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2195
symbol: AFM12840.1
gene_biotype: protein_coding
description:
  PFAM: Penicillin amidase; COGs: COG2366 Protein related to penicillin acylase; InterPro IPR002692; KEGG: pau:PA14_50980 putative penicillin amidase; PFAM: Peptidase S45, penicillin amidase; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2197
symbol: AFM12842.1
gene_biotype: protein_coding
description:
  PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family; COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: lbl:LBL_2822 pyridoxal phosphate-dependent aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: Pyridoxal phosphate-dependent aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: Turpa_2198
symbol: AFM12843.1
gene_biotype: protein_coding
description:
  rfaE bifunctional protein; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose.


ensembl_gene_id: Turpa_2199
symbol: xseA
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.


ensembl_gene_id: Turpa_2200
symbol: AFM12845.1
gene_biotype: protein_coding
description:
  Dual specificity protein phosphatase; PFAM: Cyclin-dependent kinase inhibitor 3 (CDKN3); Isochorismatase family; Phosphotransferase enzyme family; COGs: COG2453 protein-tyrosine phosphatase; InterPro IPR008425; KEGG: lbf:LBF_0535 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2201
symbol: AFM12846.1
gene_biotype: protein_coding
description:
  PFAM: Thymidine kinase; COGs: COG1435 Thymidine kinase; InterPro IPR001267; KEGG: cac:CA_C2887 thymidine kinase; PFAM: Thymidine kinase; SPTR: Thymidine kinase.


ensembl_gene_id: Turpa_2202
symbol: proB
gene_biotype: protein_coding
description:
  Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.


ensembl_gene_id: Turpa_2203
symbol: dxr
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.


ensembl_gene_id: Turpa_2204
symbol: AFM12849.1
gene_biotype: protein_coding
description:
  PFAM: Cytidylyltransferase family; COGs: COG0575 CDP-diglyceride synthetase; InterPro IPR000374; KEGG: lic:LIC10855 CDP-diglyceride synthetase; PFAM: Phosphatidate cytidylyltransferase; SPTR: CDP-diglyceride synthetase.


ensembl_gene_id: Turpa_2205
symbol: AFM12850.1
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: bmj:BMULJ_04389 outer membrane autotransporter barrel; SPTR: Outer membrane autotransporter barrel.


ensembl_gene_id: Turpa_2206
symbol: AFM12851.1
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: dma:DMR_23100 putative glycosyltransferase; SPTR: Putative glycosyltransferase.


ensembl_gene_id: Turpa_2207
symbol: AFM12852.1
gene_biotype: protein_coding
description:
  GumN family protein; PFAM: TraB family; COGs: COG3735 conserved hypothetical protein; InterPro IPR010891; KEGG: srm:SRM_00151 conserved hypothetical protein containing GumN domain; PFAM: GumN; SPTR: GumN protein.


ensembl_gene_id: Turpa_2208
symbol: AFM12853.1
gene_biotype: protein_coding
description:
  AAA ATPase central domain protein; PFAM: IstB-like ATP binding protein; COGs: COG1484 DNA replication protein; InterPro IPR003959:IPR003593; KEGG: lbf:LBF_0260 DNA replication protein; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; SPTR: DNA replication protein DnaC.


ensembl_gene_id: Turpa_2209
symbol: AFM12854.1
gene_biotype: protein_coding
description:
  PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain; COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090; KEGG: tye:THEYE_A0567 acyl-CoA dehydrogenase, short-chain specific; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region; SPTR: Acyl-CoA dehydrogenase, short-chain specific.


ensembl_gene_id: Turpa_2210
symbol: recF
gene_biotype: protein_coding
description:
  DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.


ensembl_gene_id: Turpa_2211
symbol: AFM12856.1
gene_biotype: protein_coding
description:
  DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]


ensembl_gene_id: Turpa_2212
symbol: truA
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.


ensembl_gene_id: Turpa_2214
symbol: tgt
gene_biotype: protein_coding
description:
  tRNA-guanine transglycosylase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the [...]


ensembl_gene_id: Turpa_2217
symbol: AFM12862.1
gene_biotype: protein_coding
description:
  PFAM: Anthranilate synthase component I, N terminal region; chorismate binding enzyme; COGs: COG0147 Anthranilate/para-aminobenzoate synthase component I; InterPro IPR006805:IPR015890; KEGG: mme:Marme_3565 anthranilate synthase; PFAM: Chorismate binding, C-terminal; Anthranilate synthase component I, N-terminal; SPTR: Probable anthranilate synthase component I.


ensembl_gene_id: Turpa_2218
symbol: AFM12863.1
gene_biotype: protein_coding
description:
  PFAM: Glutamine amidotransferase class-I; TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase; COGs: COG0512 Anthranilate/para-aminobenzoate synthase component II; InterPro IPR000991:IPR006221; KEGG: lbf:LBF_0031 anthranilate synthase subunit II; PFAM: Glutamine amidotransferase class-I, C-terminal; SPTR: Anthranilate synthase component II; TIGRFAM: Glutamine amidotransferase of anthranilate synthase.


ensembl_gene_id: Turpa_2219
symbol: uvrB
gene_biotype: protein_coding
description:
  Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate  [...]


ensembl_gene_id: Turpa_2223
symbol: AFM12868.1
gene_biotype: protein_coding
description:
  Protein serine/threonine phosphatase with extracellular sensor; PFAM: HAMP domain; Stage II sporulation protein E (SpoIIE); COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR003660:IPR010822:IPR001932; KEGG: alv:Alvin_2094 protein serine/threonine phosphatase; PFAM: Sporulation stage II, protein E C-terminal; HAMP linker domain; SMART: Protein phosphatase 2C-related; HAMP linker domain; SPTR: Protein serine/threonine phosphatase.


ensembl_gene_id: Turpa_2225
symbol: AFM12870.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial protein of unknown function (DUF937); COGs: COG3753 conserved hypothetical protein; InterPro IPR009282; KEGG: gbm:Gbem_3664 hypothetical protein; PFAM: Protein of unknown function DUF937, bacterial; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2227
symbol: AFM12872.1
gene_biotype: protein_coding
description:
  Alpha/beta hydrolase fold containing protein; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: pmy:Pmen_0672 alpha/beta hydrolase fold; PFAM: Alpha/beta hydrolase fold-1; SPTR: Hydrolase, alpha/beta hydrolase fold family.


ensembl_gene_id: Turpa_2228
symbol: AFM12873.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function (DUF833); COGs: COG3332 conserved hypothetical protein; InterPro IPR008551; KEGG: rfr:Rfer_1330 hypothetical protein; PFAM: Protein of unknown function DUF833; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2229
symbol: AFM12874.1
gene_biotype: protein_coding
description:
  Alpha-phosphoglucomutase; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; COGs: COG1109 Phosphomannomutase; InterPro IPR005844:IPR005845; KEGG: lde:LDBND_1663 alpha-phosphoglucomutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; SPTR: Alpha-phosphoglucomutase.


ensembl_gene_id: Turpa_2230
symbol: tpiA
gene_biotype: protein_coding
description:
  Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.


ensembl_gene_id: Turpa_2231
symbol: AFM12876.1
gene_biotype: protein_coding
description:
  PFAM: ABC transporter; Predicted permease; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR003838:IPR003593; KEGG: bba:Bd0709 macrolide ABC transporter ATP-binding protein; PFAM: ABC transporter-like; Protein of unknown function DUF214, permase predicted; SMART: ATPase, AAA+ type, core; SPTR: Macrolide export ATP-binding/permease protein MacB; Belongs to the ABC transporter superfamily. Macrolide exporter (TC 3.A.1.122) family.


ensembl_gene_id: Turpa_2232
symbol: AFM12877.1
gene_biotype: protein_coding
description:
  TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: bba:Bd0708 macrolide-specific efflux protein; PFAM: Secretion protein HlyD; SPTR: Probable macrolide-specific efflux protein; TIGRFAM: Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: Turpa_2233
symbol: AFM12878.1
gene_biotype: protein_coding
description:
  PFAM: Outer membrane efflux protein; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: bba:Bd0707 FusA/NodT family protein; PFAM: Outer membrane efflux protein; SPTR: FusA/NodT family protein.


ensembl_gene_id: Turpa_2240
symbol: AFM12885.1
gene_biotype: protein_coding
description:
  PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterPro IPR003439:IPR013563:IPR003593:IPR010066; KEGG: bpo:BP951000_2159 oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: Putative uncharacterized protein; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-bi [...]


ensembl_gene_id: Turpa_2241
symbol: AFM12886.1
gene_biotype: protein_coding
description:
  TIGRFAM: uracil phosphoribosyltransferase; COGs: COG0035 Uracil phosphoribosyltransferase; InterPro IPR005765; KEGG: mpe:MYPE10300 uracil phosphoribosyltransferase; SPTR: Uracil phosphoribosyltransferase; TIGRFAM: Uracil phosphoribosyl transferase; Belongs to the UPRTase family.


ensembl_gene_id: Turpa_2243
symbol: AFM12888.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Flagellar filament outer layer protein Flaa; KEGG: lbl:LBL_2376 endoflagellar filament sheath protein; SPTR: Endoflagellar filament sheath protein; manually curated.


ensembl_gene_id: Turpa_2244
symbol: lpxK
gene_biotype: protein_coding
description:
  lipid-A-disaccharide kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).


ensembl_gene_id: Turpa_2247
symbol: AFM12892.1
gene_biotype: protein_coding
description:
  PFAM: YicC-like family, N-terminal region; Domain of unknown function (DUF1732); TIGRFAM: TIGR00255 family protein; COGs: COG1561 Uncharacterized stress-induced protein; InterPro IPR013527:IPR013551; KEGG: acp:A2cp1_2788 hypothetical protein; PFAM: Domain of unknown function DUF1732; YicC-like, N-terminal; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2248
symbol: AFM12893.1
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function (DUF370); COGs: COG2052 conserved hypothetical protein; InterPro IPR007169; KEGG: nth:Nther_1328 hypothetical protein; PFAM: Protein of unknown function DUF370; SPTR: UPF0296 protein HMPREF1705_00865; Belongs to the RemA family.


ensembl_gene_id: Turpa_2249
symbol: AFM12894.1
gene_biotype: protein_coding
description:
  PFAM: Predicted membrane protein (DUF2339); COGs: COG5373 membrane protein; KEGG: lic:LIC13012 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2250
symbol: ruvC
gene_biotype: protein_coding
description:
  Holliday junction endonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.


ensembl_gene_id: Turpa_2252
symbol: gpmA
gene_biotype: protein_coding
description:
  Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.


ensembl_gene_id: Turpa_2254
symbol: AFM12899.1
gene_biotype: protein_coding
description:
  PFAM: HI0933-like protein; TIGRFAM: flavoprotein, HI0933 family; uncharacterized flavoprotein, PP_4765 family; COGs: COG2081 flavoprotein; InterPro IPR004792; KEGG: rce:RC1_1784 hypothetical protein; PFAM: HI0933-like protein; SPTR: Putative uncharacterized protein; TIGRFAM: HI0933-like protein.


ensembl_gene_id: Turpa_2256
symbol: AFM12901.1
gene_biotype: protein_coding
description:
  PFAM: NAD binding domain of 6-phosphogluconate dehydrogenase; COGs: COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenase; InterPro IPR006115; KEGG: gau:GAU_0672 putative oxidoreductase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; SPTR: Putative oxidoreductase.


ensembl_gene_id: Turpa_2257
symbol: AFM12902.1
gene_biotype: protein_coding
description:
  Transmembrane protein; PFAM: MgtC family; COGs: COG3174 membrane protein; KEGG: llo:LLO_2973 transmembrane protein; SPTR: Putative transmembrane protein.


ensembl_gene_id: Turpa_2258
symbol: AFM12903.1
gene_biotype: protein_coding
description:
  Ankyrin; PFAM: Astacin (Peptidase family M12A); InterPro IPR001506:IPR002110; KEGG: afv:AFLA_001100 hypothetical protein; PFAM: Ankyrin repeat; Peptidase M12A, astacin; SMART: Ankyrin repeat; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2261
symbol: metK
gene_biotype: protein_coding
description:
  Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.


ensembl_gene_id: Turpa_2263
symbol: AFM12908.1
gene_biotype: protein_coding
description:
  Metallophosphoesterase; PFAM: Calcineurin-like phosphoesterase; COGs: COG1408 phosphohydrolase; InterPro IPR004843; KEGG: hmo:HM1_0407 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase.


ensembl_gene_id: Turpa_2264
symbol: AFM12909.1
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease ATP-binding subunit ClpA; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA); COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterPro IPR004176:IPR003959:IPR013093:IPR019489:IPR003593; KEGG: cvi:CV_3669 ATP-dependent Clp protease, ATP-binding subunit; PFAM: ATPase associated with various cellular activities, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATP- [...]


ensembl_gene_id: Turpa_2265
symbol: clpS
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease adapter protein clpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.


ensembl_gene_id: Turpa_2266
symbol: AFM12911.1
gene_biotype: protein_coding
description:
  Anti-sigma-factor antagonist; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor; COGs: COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); InterPro IPR002645:IPR003658; KEGG: lic:LIC12787 anti-sigma factor antagonist; PFAM: Sulphate transporter/antisigma-factor antagonist STAS; SPTR: Anti-sigma factor antagonist; TIGRFAM: Anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family.


ensembl_gene_id: Turpa_2267
symbol: AFM12912.1
gene_biotype: protein_coding
description:
  Peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; PFAM: D-alanyl-D-alanine carboxypeptidase; COGs: COG1876 D-alanyl-D-alanine carboxypeptidase; InterPro IPR003709; KEGG: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; PFAM: Peptidase M15B/M15C, D,D-carboxypeptidase VanY/endolysins; SPTR: D-alanyl-D-alanine carboxypeptidase.


ensembl_gene_id: Turpa_2268
symbol: AFM12913.1
gene_biotype: protein_coding
description:
  PFAM: NADH:flavin oxidoreductase / NADH oxidase family; COGs: COG1902 NADH:flavin oxidoreductase Old Yellow Enzyme family; InterPro IPR001155; KEGG: bam:Bamb_4732 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; SPTR: NADH:flavin oxidoreductase/NADH oxidase.


ensembl_gene_id: Turpa_2269
symbol: AFM12914.1
gene_biotype: protein_coding
description:
  PFAM: ABC transporter; COGs: COG1137 ABC-type (unclassified) transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: lbf:LBF_1599 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ATP-binding protein of an ABC transporter complex.


ensembl_gene_id: Turpa_2270
symbol: AFM12915.1
gene_biotype: protein_coding
description:
  RNA polymerase, sigma 54 subunit, RpoN/SigL; PFAM: Sigma-54 factor, Activator interacting domain (AID); Sigma-54 factor, core binding domain; Sigma-54, DNA binding domain; TIGRFAM: RNA polymerase sigma-54 factor; COGs: COG1508 DNA-directed RNA polymerase specialized sigma subunit sigma54 homolog; InterPro IPR000394:IPR007046:IPR007634; KEGG: lbl:LBL_1670 DNA-directed RNA polymerase sigma-54 subunit; PFAM: RNA polymerase sigma factor 54, DNA-binding; RNA polymerase sigma factor 54, core-binding; RNA polymerase sigma factor 54; SPTR: DNA-directed RNA polymerase sigma-54 subunit.


ensembl_gene_id: Turpa_2271
symbol: AFM12916.1
gene_biotype: protein_coding
description:
  TDP-4-keto-6-deoxy-D-glucose transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family; TIGRFAM: TDP-4-keto-6-deoxy-D-glucose transaminase; COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653:IPR012749; KEGG: ppn:Palpr_1148 tdp-4-KetO-6-deoxy-D-glucose transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: TDP-4-keto-6-deoxy-D-glucose transaminase; TIGRFAM: TDP-4-keto-6-deoxy-D-glucose transaminase; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: Turpa_2272
symbol: pheT
gene_biotype: protein_coding
description:
  phenylalanyl-tRNA synthetase beta subunit; PFAM: tRNA synthetase B5 domain; B3/4 domain; Ferredoxin-fold anticodon binding domain; Putative tRNA binding domain; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial; COGs: COG0072 Phenylalanyl-tRNA synthetase beta subunit; HAMAP: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; InterPro IPR004532:IPR002547:IPR005146:IPR005147:IPR005121; KEGG: lil:LA_4035 phenylalanyl-tRNA synthetase subunit beta; PFAM: B3/B4 tRNA-binding domain; tRNA-binding region; tRNA synthetase, B5; Phenylalanyl-tRNA syntheta [...]


ensembl_gene_id: Turpa_2273
symbol: pheS
gene_biotype: protein_coding
description:
  phenylalanyl-tRNA synthetase, alpha subunit; PFAM: tRNA synthetases class II core domain (F); Aminoacyl tRNA synthetase class II, N-terminal domain; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; COGs: COG0016 Phenylalanyl-tRNA synthetase alpha subunit; HAMAP: Phenylalanyl-tRNA synthetase alpha chain; InterPro IPR004188:IPR002319:IPR004529; KEGG: lbf:LBF_0490 phenylalanyl-tRNA synthetase subunit alpha; PFAM: Phenylalanyl-tRNA synthetase alpha chain; Phenylalanyl-tRNA synthetase, class II, N-terminal; SPTR: Phenylalanyl-tRNA synthetase alpha chain; TIGRFAM: Phenylalanyl-tRNA synt [...]


ensembl_gene_id: Turpa_2274
symbol: AFM12919.1
gene_biotype: protein_coding
description:
  Acriflavin resistance protein; PFAM: AcrB/AcrD/AcrF family; Outer membrane efflux protein; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036:IPR003423; KEGG: dak:DaAHT2_0587 acriflavin resistance protein; PFAM: Acriflavin resistance protein; Outer membrane efflux protein; SPTR: Acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: Turpa_2275
symbol: AFM12920.1
gene_biotype: protein_coding
description:
  PFAM: Polyketide cyclase / dehydrase and lipid transport; InterPro IPR019587; KEGG: vha:VIBHAR_02853 hypothetical protein; PFAM: Polyketide cyclase/dehydrase; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2276
symbol: AFM12921.1
gene_biotype: protein_coding
description:
  Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase; COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR.


ensembl_gene_id: Turpa_2277
symbol: AFM12922.1
gene_biotype: protein_coding
description:
  Hypothetical protein; COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold; KEGG: pcu:pc0826 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2278
symbol: AFM12923.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial regulatory proteins, tetR family; InterPro IPR001647; KEGG: cyn:Cyan7425_2726 TetR family transcriptional regulator; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family.


ensembl_gene_id: Turpa_2279
symbol: AFM12924.1
gene_biotype: protein_coding
description:
  Putative RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70 region 2; COGs: COG4941 RNA polymerase sigma factor containing a TPR repeat domain; InterPro IPR007627:IPR014284; KEGG: ara:Arad_3754 RNA polymerase sigma factor protein; PFAM: RNA polymerase sigma-70 region 2; SPTR: RNA polymerase sigma factor protein; TIGRFAM: RNA polymerase sigma-70.


ensembl_gene_id: Turpa_2280
symbol: AFM12925.1
gene_biotype: protein_coding
description:
  PFAM: YCII-related domain; COGs: COG3795 conserved hypothetical protein; InterPro IPR005545; KEGG: vpe:Varpa_3988 YCII-related protein; PFAM: YCII-related; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2282
symbol: AFM12927.1
gene_biotype: protein_coding
description:
  PFAM: Pirin C-terminal cupin domain; Pirin; COGs: COG1741 Pirin-related protein; InterPro IPR003829; KEGG: bam:Bamb_4724 pirin domain-containing protein; PFAM: Pirin, N-terminal; SPTR: Pirin domain protein; Belongs to the pirin family.


ensembl_gene_id: Turpa_2283
symbol: AFM12928.1
gene_biotype: protein_coding
description:
  PFAM: Transglycosylase SLT domain; COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains); InterPro IPR008258; KEGG: lbf:LBF_0831 transglycosylase; PFAM: Lytic transglycosylase-like, catalytic; SPTR: Putative transglycosylase.


ensembl_gene_id: Turpa_2284
symbol: purE
gene_biotype: protein_coding
description:
  5-(carboxyamino)imidazole ribonucleotide mutase; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).


ensembl_gene_id: Turpa_2286
symbol: purK
gene_biotype: protein_coding
description:
  5-(carboxyamino)imidazole ribonucleotide synthase; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).


ensembl_gene_id: Turpa_2287
symbol: AFM12932.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function (DUF1343); COGs: COG3876 conserved hypothetical protein; InterPro IPR008302; KEGG: lbl:LBL_1327 hypothetical protein; PFAM: Uncharacterised conserved protein UCP016719; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2289
symbol: AFM12934.1
gene_biotype: protein_coding
description:
  PFAM: N-acetylmuramoyl-L-alanine amidase; Fibronectin type III domain; COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508:IPR003961; KEGG: sur:STAUR_5237 N-acetylmuramoyl-L-alanine amidase; PFAM: Fibronectin, type III; Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic; Fibronectin, type III; SPTR: Xanthan lyase, putative.


ensembl_gene_id: Turpa_2291
symbol: ilvC
gene_biotype: protein_coding
description:
  Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.


ensembl_gene_id: Turpa_2293
symbol: dxs
gene_biotype: protein_coding
description:
  1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.


ensembl_gene_id: Turpa_2294
symbol: AFM12939.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF343; PFAM: Trm112p-like protein; InterPro IPR005651; KEGG: rba:RB12383 hypothetical protein; PFAM: Protein of unknown function DUF343; SPTR: Protein containing DUF343.


ensembl_gene_id: Turpa_2296
symbol: AFM12941.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, ArsR family; PFAM: Methyltransferase domain; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR001845:IPR013216; KEGG: acp:A2cp1_0173 transcriptional regulator, ArsR family; PFAM: Methyltransferase type 11; HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: Transcriptional regulator, ArsR family.


ensembl_gene_id: Turpa_2298
symbol: AFM12943.1
gene_biotype: protein_coding
description:
  Cell wall hydrolase/autolysin; InterPro IPR002508; KEGG: lbf:LBF_1300 hypothetical protein; PFAM: Cell wall hydrolase/autolysin, catalytic; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2299
symbol: AFM12944.1
gene_biotype: protein_coding
description:
  Lipopolysaccharide heptosyltransferase II; PFAM: Glycosyltransferase family 9 (heptosyltransferase); TIGRFAM: lipopolysaccharide heptosyltransferase II; COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201:IPR011910; KEGG: rso:RSc0565 ADP-heptose--lipopolysaccharide heptosyltransferase II protein; PFAM: Glycosyl transferase, family 9; SPTR: Probable adp-heptose--lipopolysaccharide heptosyltransferase II protein; TIGRFAM: Lipopolysaccharide heptosyltransferase II.


ensembl_gene_id: Turpa_2300
symbol: AFM12945.1
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: scl:sce0895 exported sugar-binding protein; SPTR: Putative exported sugar-binding protein with thrombospondin-like C-terminal domain.


ensembl_gene_id: Turpa_2302
symbol: AFM12947.1
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: saz:Sama_3474 heavy metal efflux system protein; SPTR: Heavy metal efflux system protein, putative.


ensembl_gene_id: Turpa_2304
symbol: AFM12948.1
gene_biotype: protein_coding
description:
  PFAM: Multicopper oxidase; COGs: COG2132 Putative multicopper oxidase; InterPro IPR011707:IPR011706; KEGG: rpf:Rpic12D_4026 multicopper oxidase type 3; PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 2; SPTR: Similar to multicopper oxidase sufI.


ensembl_gene_id: Turpa_2305
symbol: AFM12949.1
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: nde:NIDE1902 RNA polymerase sigma factor, sigma-70 family; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70.


ensembl_gene_id: Turpa_2306
symbol: AFM12950.1
gene_biotype: protein_coding
description:
  Type IV pilus assembly PilZ; PFAM: PilZ domain; InterPro IPR009875; KEGG: lbl:LBL_0513 hypothetical protein; PFAM: Type IV pilus assembly PilZ; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2307
symbol: AFM12951.1
gene_biotype: protein_coding
description:
  Protein serine/threonine phosphatase with extracellular sensor; PFAM: HAMP domain; Stage II sporulation protein E (SpoIIE); COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR003660:IPR010822:IPR001932; KEGG: lbf:LBF_3131 serine phosphatase RsbU; PFAM: Sporulation stage II, protein E C-terminal; HAMP linker domain; SMART: HAMP linker domain; Protein phosphatase 2C-related; SPTR: Putative chemotaxis sensory transducer; putative membrane protein.


ensembl_gene_id: Turpa_2308
symbol: AFM12952.1
gene_biotype: protein_coding
description:
  TIGRFAM: phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein; COGs: COG3221 ABC-type phosphate/phosphonate transport system periplasmic component; InterPro IPR005770; KEGG: tai:Taci_0209 methyl-accepting chemotaxis sensory transducer; SPTR: Methyl-accepting chemotaxis sensory transducer; TIGRFAM: Phosphonate-binding periplasmic protein.


ensembl_gene_id: Turpa_2309
symbol: AFM12953.1
gene_biotype: protein_coding
description:
  PFAM: PAS fold; TIGRFAM: PAS domain S-box; InterPro IPR013656:IPR000014; KEGG: lbl:LBL_1852 hypothetical protein; PFAM: PAS fold-4; SMART: PAS; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2310
symbol: AFM12954.1
gene_biotype: protein_coding
description:
  PFAM: Aminotransferase class-V; COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterPro IPR000192; KEGG: syn:slr5022 hypothetical protein; PFAM: Aminotransferase, class V/Cysteine desulfurase; SPTR: Aminotransferase, class V superfamily.


ensembl_gene_id: Turpa_2311
symbol: AFM12955.1
gene_biotype: protein_coding
description:
  PFAM: Phosphoadenosine phosphosulfate reductase family; COGs: COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase; InterPro IPR002500; KEGG: cyt:cce_5239 hypothetical protein; PFAM: Phosphoadenosine phosphosulphate reductase; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2314
symbol: AFM12958.1
gene_biotype: protein_coding
description:
  Helix-turn-helix domain protein; InterPro IPR001387; KEGG: dap:Dacet_0763 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family.


ensembl_gene_id: Turpa_2315
symbol: AFM12959.1
gene_biotype: protein_coding
description:
  Histidine triad (HIT) protein; PFAM: HIT domain; COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; InterPro IPR001310; KEGG: bpf:BpOF4_17145 cell-cycle regulation histidine triad protein; PFAM: Histidine triad (HIT) protein; SPTR: Cell-cycle regulation histidine triad protein.


ensembl_gene_id: Turpa_2317
symbol: AFM12961.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function DUF88; InterPro IPR002790; KEGG: hypothetical protein; PFAM: Protein of unknown function DUF88; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2320
symbol: AFM12964.1
gene_biotype: protein_coding
description:
  Hypothetical protein; TIGRFAM: DNA phosphorothioation-associated putative methyltransferase; KEGG: cyh:Cyan8802_1016 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2321
symbol: AFM12965.1
gene_biotype: protein_coding
description:
  PFAM: Methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase, prokaryotic form; COGs: COG0685 5 10-methylenetetrahydrofolate reductase; InterPro IPR003171:IPR004620; KEGG: lbf:LBF_3162 5,10-methylenetetrahydrofolate reductase; PFAM: Methylenetetrahydrofolate reductase; SPTR: Methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.


ensembl_gene_id: Turpa_2323
symbol: AFM12967.1
gene_biotype: protein_coding
description:
  PFAM: ABC transporter; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: mxa:MXAN_2430 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein.


ensembl_gene_id: Turpa_2324
symbol: AFM12968.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF214; PFAM: Predicted permease; COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: sur:STAUR_5278 ABC transporter permease; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: ABC transporter, permease protein.


ensembl_gene_id: Turpa_2325
symbol: AFM12969.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF214; PFAM: Predicted permease; COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: sur:STAUR_4156 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: Putative ABC transporter, permease protein.


ensembl_gene_id: Turpa_2328
symbol: AFM12972.1
gene_biotype: protein_coding
description:
  PFAM: Pterin 4 alpha carbinolamine dehydratase; COGs: COG2154 Pterin-4a-carbinolamine dehydratase; HAMAP: pterin-4-alpha-carbinolamine dehydratase; InterPro IPR001533; KEGG: syw:SYNW1794 pterin-4-alpha-carbinolamine dehydratase; PFAM: Transcriptional coactivator/pterin dehydratase; SPTR: Putative pterin-4-alpha-carbinolamine dehydratase.


ensembl_gene_id: Turpa_2329
symbol: AFM12973.1
gene_biotype: protein_coding
description:
  Fibronectin type III domain protein; PFAM: Collagenase NC10 and Endostatin; InterPro IPR003961; KEGG: gme:Gmet_2185 fibronectin, type III; PFAM: Fibronectin, type III; SPTR: Fibronectin, type III.


ensembl_gene_id: Turpa_2330
symbol: AFM12974.1
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.


ensembl_gene_id: Turpa_2331
symbol: trpF
gene_biotype: protein_coding
description:
  PFAM: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; COGs: COG0135 Phosphoribosylanthranilate isomerase; InterPro IPR001240; KEGG: gur:Gura_1736 N-(5'-phosphoribosyl)anthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); SPTR: N-(5'-phosphoribosyl)anthranilate isomerase; Belongs to the TrpF family.


ensembl_gene_id: Turpa_2332
symbol: AFM12976.1
gene_biotype: protein_coding
description:
  ABC-type transporter, periplasmic subunit; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle; COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: sfu:Sfum_1411 extracellular solute-binding protein; PFAM: Bacterial extracellular solute-binding protein, family 5; SPTR: Extracellular solute-binding protein, family 5.


ensembl_gene_id: Turpa_2334
symbol: AFM12978.1
gene_biotype: protein_coding
description:
  Hypothetical protein; COGs: COG4929 Uncharacterized membrane-anchored protein; KEGG: svo:SVI_2020 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2335
symbol: AFM12979.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF2157, membrane; PFAM: Predicted membrane protein (DUF2157); COGs: COG4872 membrane protein; InterPro IPR018677; KEGG: svo:SVI_2019 hypothetical protein; PFAM: Protein of unknown function DUF2157, membrane; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2336
symbol: AFM12980.1
gene_biotype: protein_coding
description:
  PFAM: Sulfatase; COGs: COG1368 Phosphoglycerol transferase and related protein alkaline phosphatase superfamily; InterPro IPR000917; KEGG: sulfatase; PFAM: Sulfatase; SPTR: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily.


ensembl_gene_id: Turpa_2337
symbol: AFM12981.1
gene_biotype: protein_coding
description:
  Phosphoesterase PA-phosphatase related protein; PFAM: CDP-alcohol phosphatidyltransferase; PAP2 superfamily; InterPro IPR000462:IPR000326; KEGG: scl:sce7309 hypothetical protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; CDP-alcohol phosphatidyltransferase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; SPTR: Conserved membrane protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: Turpa_2338
symbol: AFM12982.1
gene_biotype: protein_coding
description:
  PFAM: Aminotransferase class-V; TIGRFAM: 2-aminoethylphosphonate aminotransferase; COGs: COG0075 Serine-pyruvate aminotransferase/ aspartate aminotransferase; InterPro IPR000192; KEGG: ssm:Spirs_4228 2-aminoethylphosphonate aminotransferase; PFAM: Aminotransferase, class V/Cysteine desulfurase; SPTR: 2-aminoethylphosphonate aminotransferase.


ensembl_gene_id: Turpa_2339
symbol: AFM12983.1
gene_biotype: protein_coding
description:
  Phosphonopyruvate decarboxylase; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: phosphonopyruvate decarboxylase; COGs: COG4032 thiamine-pyrophosphate-binding protein; InterPro IPR011766:IPR017684; KEGG: bur:Bcep18194_B1915 thiamine pyrophosphate enzyme, putative 3-phosphonopyruvate decarboxylase; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; SPTR: Phosphonopyruvate decarboxylase; TIGRFAM: Phosphonopyruvate decarboxylase.


ensembl_gene_id: Turpa_2340
symbol: AFM12984.1
gene_biotype: protein_coding
description:
  TIGRFAM: phosphoenolpyruvate phosphomutase; COGs: COG2513 PEP phosphonomutase; InterPro IPR012698; KEGG: ssm:Spirs_4230 phosphoenolpyruvate phosphomutase; SPTR: Phosphoenolpyruvate phosphomutase; TIGRFAM: Phosphoenolpyruvate phosphomutase, core.


ensembl_gene_id: Turpa_2342
symbol: AFM12985.1
gene_biotype: protein_coding
description:
  PFAM: DsrC like protein; TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; COGs: COG2920 Dissimilatory sulfite reductase (desulfoviridin) gamma subunit; InterPro IPR007453; KEGG: pth:PTH_2856 dissimilatory sulfite reductase (desulfoviridin), gamma subunit; PFAM: DsrC-like protein; SPTR: Putative uncharacterized protein; TIGRFAM: DsrC-like protein.


ensembl_gene_id: Turpa_2343
symbol: AFM12986.1
gene_biotype: protein_coding
description:
  PFAM: Pyridine nucleotide-disulphide oxidoreductase; COGs: COG1252 NADH dehydrogenase FAD-containing subunit; InterPro IPR013027; KEGG: cts:Ctha_0650 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: Pyridine nucleotide-disulphide oxidoreductase domain protein.


ensembl_gene_id: Turpa_2344
symbol: AFM12987.1
gene_biotype: protein_coding
description:
  PFAM: Predicted nucleotide-binding protein containing TIR-like domain; InterPro IPR019302; KEGG: vap:Vapar_2712 hypothetical protein; PFAM: Nucleotide-binding protein, predicted, TIR-like; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2345
symbol: AFM12988.1
gene_biotype: protein_coding
description:
  PAS/PAC sensor hybrid histidine kinase; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterPro IPR013656:IPR013767:IPR013655:IPR003661:IPR003594:IPR0017 89:IPR000014:IPR001610; KEGG: ote:Oter_0386 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; PAS fold; PAS fold-4; PAS fold-3; Signal transduction histidine kinase, subgroup 1, dimerisa [...]


ensembl_gene_id: Turpa_2346
symbol: AFM12989.1
gene_biotype: protein_coding
description:
  2-oxoacid:acceptor oxidoreductase, alpha subunit; PFAM: domain; Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, alpha subunit; COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterPro IPR019752:IPR002880; KEGG: tcu:Tcur_4391 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; Pyruvate/ketoisovalerate oxidoreductase; SPTR: Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; TIGRFAM: 2-ox [...]


ensembl_gene_id: Turpa_2347
symbol: AFM12990.1
gene_biotype: protein_coding
description:
  Pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family; COGs: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase beta subunit; InterPro IPR011766:IPR011896; KEGG: rmr:Rmar_0336 thiamine pyrophosphate protein domain-containing protein TPP-binding protein; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; SPTR: Thiamine pyrophosphate protein domain protein TPP-binding protei [...]


ensembl_gene_id: Turpa_2348
symbol: AFM12991.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function (DUF2490); InterPro IPR019619; KEGG: dfe:Dfer_0843 hypothetical protein; PFAM: Protein of unknown function DUF2490; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2350
symbol: AFM12993.1
gene_biotype: protein_coding
description:
  tRNA/rRNA methyltransferase (SpoU); PFAM: SpoU rRNA Methylase family; RNA 2'-O ribose methyltransferase substrate binding; COGs: COG0566 rRNA methylase; InterPro IPR013123:IPR001537; KEGG: ote:Oter_1790 tRNA/rRNA methyltransferase (SpoU); PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; SPTR: tRNA/rRNA methyltransferase (SpoU); Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: Turpa_2351
symbol: AFM12994.1
gene_biotype: protein_coding
description:
  Phage shock protein A (PspA) family protein; PFAM: PspA/IM30 family; InterPro IPR007157; KEGG: mxa:MXAN_5703 PspA/IM30 family protein; PFAM: PspA/IM30; SPTR: PspA/IM30 family protein.


ensembl_gene_id: Turpa_2353
symbol: AFM12996.1
gene_biotype: protein_coding
description:
  Anti-anti-sigma regulatory factor, SpoIIAA; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor; COGs: COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); InterPro IPR002645:IPR003658; KEGG: swo:Swol_1795 anti-anti-sigma regulatory factor, SpoIIAA; PFAM: Sulphate transporter/antisigma-factor antagonist STAS; SPTR: Anti-sigma factor antagonist; TIGRFAM: Anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family.


ensembl_gene_id: Turpa_2354
symbol: AFM12997.1
gene_biotype: protein_coding
description:
  Protein serine/threonine phosphatase with extracellular sensor; PFAM: HAMP domain; Stage II sporulation protein E (SpoIIE); COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR003660:IPR010822:IPR001932; KEGG: lbf:LBF_1690 regulator of sigma subunit; PFAM: Sporulation stage II, protein E C-terminal; HAMP linker domain; SMART: Protein phosphatase 2C-related; HAMP linker domain; SPTR: Putative sigma factor sigB regulation protein RsbU; putative membrane protein; putative signal peptide.


ensembl_gene_id: Turpa_2356
symbol: AFM12999.1
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: sti:Sthe_2174 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70.


ensembl_gene_id: Turpa_2359
symbol: AFM13002.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Late embryogenesis abundant protein; KEGG: sur:STAUR_1022 late embryogenesis abundant-like protein; SPTR: Late embryogenesis abundant-like protein.


ensembl_gene_id: Turpa_2361
symbol: AFM13004.1
gene_biotype: protein_coding
description:
  PFAM: Conserved hypothetical protein (DUF2461); TIGRFAM: TIGR02453 family protein; COGs: COG5587 conserved hypothetical protein; InterPro IPR012808; KEGG: lbl:LBL_2727 hypothetical protein; PFAM: Conserved hypothetical protein CHP02453; SPTR: Putative uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02453.


ensembl_gene_id: Turpa_2362
symbol: AFM13005.1
gene_biotype: protein_coding
description:
  Hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain; TIGRFAM: hemerythrin-like metal-binding domain; COGs: COG2703 Hemerythrin; InterPro IPR012312:IPR012827; KEGG: lbf:LBF_2842 hypothetical protein; PFAM: Haemerythrin/HHE cation-binding motif; SPTR: Putative uncharacterized protein; TIGRFAM: Haemerythrin-like, metal-binding.


ensembl_gene_id: Turpa_2368
symbol: AFM13011.1
gene_biotype: protein_coding
description:
  Hypothetical protein; InterPro IPR002110; KEGG: tva:TVAG_291510 ankyrin repeat protein; SPTR: Ankyrin repeat protein, putative.


ensembl_gene_id: Turpa_2369
symbol: AFM13012.1
gene_biotype: protein_coding
description:
  Ankyrin; PFAM: MORN repeat; COGs: COG4642 conserved hypothetical protein; InterPro IPR002110:IPR003409; KEGG: tet:TTHERM_00354600 IQ calmodulin-binding motif family protein; PFAM: Ankyrin repeat; MORN motif; SMART: Ankyrin repeat; MORN motif; SPTR: Morn motif-containing protein.


ensembl_gene_id: Turpa_2370
symbol: AFM13013.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial SH3 domain; InterPro IPR013247; KEGG: lbf:LBF_4214 hypothetical protein; PFAM: SH3, type 3; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2372
symbol: AFM13015.1
gene_biotype: protein_coding
description:
  SH3 type 3 domain protein; InterPro IPR002110:IPR013247; KEGG: bhy:BHWA1_00116 ankyrin repeat-containing protein; PFAM: SH3, type 3; Ankyrin repeat; SPTR: FOG: Ankyrin repeat.


ensembl_gene_id: Turpa_2377
symbol: AFM13020.1
gene_biotype: protein_coding
description:
  PFAM: 7TM diverse intracellular signalling; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; COGs: COG4585 Signal transduction histidine kinase; InterPro IPR011623:IPR003594; KEGG: chu:CHU_1988 sensor protein for response regulator AtoC; PFAM: Diverse 7TM receptor, transmembrane region; ATP-binding region, ATPase-like; SPTR: Sensor protein for response regulator AtoC.


ensembl_gene_id: Turpa_2378
symbol: AFM13021.1
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: lbl:LBL_2312 receiver component of a two-component response regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SPTR: Receiver component of a t [...]


ensembl_gene_id: Turpa_2384
symbol: AFM13026.1
gene_biotype: protein_coding
description:
  Cell wall/surface repeat protein; PFAM: Listeria-Bacteroides repeat domain (List_Bact_rpt); TIGRFAM: Listeria/Bacterioides repeat; InterPro IPR013378; KEGG: psn:Pedsa_2026 NHL repeat containing protein; PFAM: Listeria/Bacterioides repeat; SPTR: NHL repeat containing protein; TIGRFAM: Listeria/Bacterioides repeat.


ensembl_gene_id: Turpa_2385
symbol: AFM13027.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Cysteine rich repeat; InterPro IPR001893; KEGG: bba:Bd3611 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2386
symbol: AFM13028.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, AbrB family; PFAM: SpoVT / AbrB like domain; TIGRFAM: looped-hinge helix DNA binding domain, AbrB family; InterPro IPR007159:IPR006339; KEGG: cyh:Cyan8802_2466 AbrB family transcriptional regulator; PFAM: Transcription regulator AbrB/SpoV, predicted; SPTR: Transcriptional regulator, AbrB family; TIGRFAM: Transcription regulator AbrB.


ensembl_gene_id: Turpa_2387
symbol: AFM13029.1
gene_biotype: protein_coding
description:
  PFAM: PemK-like protein; KEGG: syn:sll1130 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2388
symbol: obg
gene_biotype: protein_coding
description:
  GTPase obg; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.


ensembl_gene_id: Turpa_2392
symbol: AFM13034.1
gene_biotype: protein_coding
description:
  FAD-dependent pyridine nucleotide-disulfide oxidoreductase; PFAM: GMC oxidoreductase; COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR013027:IPR007867; KEGG: mtt:Ftrac_1591 fad-dependent pyridine nucleotide-disulfide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Glucose-methanol-choline oxidoreductase, C-terminal; SPTR: FAD-dependent pyridine nucleotide-disulfide oxidoreductase.


ensembl_gene_id: Turpa_2393
symbol: AFM13035.1
gene_biotype: protein_coding
description:
  PFAM: Peptidase family M23; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: tmr:Tmar_1502 peptidase M23; PFAM: Peptidase M23; SPTR: Peptidase M23.


ensembl_gene_id: Turpa_2394
symbol: dapA
gene_biotype: protein_coding
description:
  Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).


ensembl_gene_id: Turpa_2395
symbol: dapB
gene_biotype: protein_coding
description:
  Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.


ensembl_gene_id: Turpa_2397
symbol: murA
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.


ensembl_gene_id: Turpa_2398
symbol: AFM13040.1
gene_biotype: protein_coding
description:
  Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.


ensembl_gene_id: Turpa_2399
symbol: dinB
gene_biotype: protein_coding
description:
  DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.


ensembl_gene_id: Turpa_2400
symbol: AFM13042.1
gene_biotype: protein_coding
description:
  PFAM: Peptidase family M23; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: lbf:LBF_3220 metalloendopeptidase; PFAM: Peptidase M23; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2401
symbol: prmC
gene_biotype: protein_coding
description:
  protein-(glutamine-N5) methyltransferase, release factor-specific; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.


ensembl_gene_id: Turpa_2403
symbol: AFM13045.1
gene_biotype: protein_coding
description:
  Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: Turpa_2404
symbol: asd
gene_biotype: protein_coding
description:
  Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.


ensembl_gene_id: Turpa_2405
symbol: AFM13047.1
gene_biotype: protein_coding
description:
  Arginine-tRNA-protein transferase domain protein; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily.


ensembl_gene_id: Turpa_2406
symbol: AFM13048.1
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: fjo:Fjoh_3804 ECF subfamily RNA polymerase sigma-24 factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: Putative RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70.


ensembl_gene_id: Turpa_2407
symbol: AFM13049.1
gene_biotype: protein_coding
description:
  PFAM: 7TM diverse intracellular signalling; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Hpt domain; COGs: COG0643 Chemotaxis protein histidine kinase and related kinase; InterPro IPR006104:IPR011623:IPR008207:IPR003594; KEGG: cce:Ccel_1545 histidine kinase; PFAM: ATP-binding region, ATPase-like; Diverse 7TM receptor, transmembrane region; Glycoside hydrolase family 2, carbohydrate-binding; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: ATP-binding region, ATPase-like; SPTR: Histidine kinase.


ensembl_gene_id: Turpa_2408
symbol: AFM13050.1
gene_biotype: protein_coding
description:
  PFAM: Response regulator receiver domain; COGs: COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain; InterPro IPR001789; KEGG: hor:Hore_10620 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator.


ensembl_gene_id: Turpa_2409
symbol: AFM13051.1
gene_biotype: protein_coding
description:
  Alpha/beta hydrolase fold containing protein; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: lbf:LBF_4163 alpha/beta hydrolase superfamily protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2411
symbol: AFM13053.1
gene_biotype: protein_coding
description:
  PFAM: Glutaredoxin; TIGRFAM: Glutaredoxin, GrxC family; COGs: COG0695 Glutaredoxin and related protein; InterPro IPR002109; KEGG: etr:ETAE_3459 glutaredoxin 3; PFAM: Glutaredoxin; SPTR: Glutaredoxin 3.


ensembl_gene_id: Turpa_2412
symbol: AFM13054.1
gene_biotype: protein_coding
description:
  PFAM: Beta-lactamase; COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: spu:575700 hypothetical LOC575700; PFAM: Beta-lactamase-related; SPTR: Putative esterase.


ensembl_gene_id: Turpa_2415
symbol: AFM13057.1
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function (DUF1905); InterPro IPR015018; KEGG: meh:M301_0541 domain of unknown function DUF1905; PFAM: Protein of unknown function DUF1905; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2416
symbol: AFM13058.1
gene_biotype: protein_coding
description:
  PFAM: Aldehyde dehydrogenase family; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: abo:ABO_0703 dehydrogenase; PFAM: Aldehyde dehydrogenase; SPTR: Aldehyde dehydrogenase (NAD) family protein; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: Turpa_2418
symbol: AFM13060.1
gene_biotype: protein_coding
description:
  PFAM: Thioesterase superfamily; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family; COGs: COG0824 thioesterase; InterPro IPR006683; KEGG: thioesterase superfamily protein; PFAM: Thioesterase superfamily; SPTR: Thioesterase family protein domain protein.


ensembl_gene_id: Turpa_2419
symbol: AFM13061.1
gene_biotype: protein_coding
description:
  PFAM: Fibronectin type III domain; Papain family cysteine protease; COGs: COG4870 Cysteine protease; InterPro IPR000668:IPR003961; KEGG: lbf:LBF_3081 cysteine protease; PFAM: Fibronectin, type III; Peptidase C1A, papain C-terminal; SMART: Fibronectin, type III; Peptidase C1A, papain C-terminal; SPTR: Putative cysteine protease; putative signal peptide.


ensembl_gene_id: Turpa_2421
symbol: AFM13063.1
gene_biotype: protein_coding
description:
  PFAM: Glycosyl transferases group 1; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: csa:Csal_0013 glycosyl transferase, group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase, group 1 family protein.


ensembl_gene_id: Turpa_2422
symbol: AFM13064.1
gene_biotype: protein_coding
description:
  Class II aldolase/adducin family protein; PFAM: Class II Aldolase and Adducin N-terminal domain; COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase; InterPro IPR001303; KEGG: ter:Tery_4650 ribulose-5-phosphate 4-epimerase and related epimerase and aldolases; PFAM: Class II aldolase/adducin, N-terminal; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2423
symbol: AFM13065.1
gene_biotype: protein_coding
description:
  PFAM: Glycosyl transferases group 1; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: rmr:Rmar_1363 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1.


ensembl_gene_id: Turpa_2424
symbol: AFM13066.1
gene_biotype: protein_coding
description:
  Glycosidase related protein; PFAM: Domain of unknown function (DUF377); COGs: COG2152 glycosylase; InterPro IPR007184; KEGG: bja:bll5143 hypothetical protein; PFAM: Glycosidase, PH1107-related; SPTR: Bll5143 protein; manually curated.


ensembl_gene_id: Turpa_2425
symbol: AFM13067.1
gene_biotype: protein_coding
description:
  PFAM: Glutathione-dependent formaldehyde-activating enzyme; COGs: COG3791 conserved hypothetical protein; InterPro IPR006913; KEGG: bbt:BBta_7165 hypothetical protein; PFAM: Glutathione-dependent formaldehyde-activating, GFA; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2428
symbol: AFM13070.1
gene_biotype: protein_coding
description:
  PFAM: Iron-containing alcohol dehydrogenase; COGs: COG1454 Alcohol dehydrogenase class IV; InterPro IPR001670; KEGG: psa:PST_0312 iron-containing alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type; SPTR: Ethanolamine utilization protein EutG.


ensembl_gene_id: Turpa_2431
symbol: AFM13073.1
gene_biotype: protein_coding
description:
  PFAM: Fatty acid hydroxylase superfamily; COGs: COG3000 Sterol desaturase; InterPro IPR006694; KEGG: vap:Vapar_3610 fatty acid hydroxylase; PFAM: Fatty acid hydroxylase; SPTR: Fatty acid hydroxylase.


ensembl_gene_id: Turpa_2432
symbol: AFM13074.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function (DUF1697); COGs: COG3797 conserved hypothetical protein; InterPro IPR012545; KEGG: sus:Acid_2858 hypothetical protein; PFAM: Protein of unknown function DUF1697; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2434
symbol: AFM13076.1
gene_biotype: protein_coding
description:
  PFAM: NAD dependent epimerase/dehydratase family; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: gox:GOX2253 putative oxidoreductase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: Hopanoid-associated sugar epimerase.


ensembl_gene_id: Turpa_2435
symbol: AFM13077.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; COGs: COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain; InterPro IPR000005:IPR018060; KEGG: bra:BRADO0013 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Putative transcriptional regulatory protein, AraC family.


ensembl_gene_id: Turpa_2436
symbol: AFM13078.1
gene_biotype: protein_coding
description:
  PFAM: D-arabinono-1,4-lactone oxidase; FAD binding domain; COGs: COG0277 FAD/FMN-containing dehydrogenase; InterPro IPR006094:IPR007173; KEGG: lbc:LACBIDRAFT_318937 L-galactono-gamma-lactone oxidase; PFAM: FAD linked oxidase, N-terminal; D-arabinono-1,4-lactone oxidase; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2437
symbol: AFM13079.1
gene_biotype: protein_coding
description:
  Integral membrane sensor hybrid histidine kinase; PFAM: 7TM diverse intracellular signalling; Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Stage II sporulation protein E (SpoIIE); Glycosyl hydrolases family 2, sugar binding domain; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR006104:IPR011623:IPR003661:IPR003594:IPR001789:IPR0108 22:IPR001932; KEGG: lbf:LBF_0920 two component response regulator sensor histidine kinase/response regulator subunits; PFAM: Sporulation stage II, protein [...]


ensembl_gene_id: Turpa_2439
symbol: AFM13081.1
gene_biotype: protein_coding
description:
  COGs: COG1233 Phytoene dehydrogenase and related protein; KEGG: lbf:LBF_0069 phytoene dehydrogenase-like protein; SPTR: Putative dehydrogenase-related protein.


ensembl_gene_id: Turpa_2440
symbol: AFM13082.1
gene_biotype: protein_coding
description:
  Dihydrolipoamide dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; TIGRFAM: dihydrolipoamide dehydrogenase; COGs: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterPro IPR006258:IPR013027:IPR004099; KEGG: lbf:LBF_1023 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; SPTR: Dihydrolipoyl dehydrogenase; TIGRFAM: Dihydrolipoamide dehydrogenase.


ensembl_gene_id: Turpa_2442
symbol: AFM13084.1
gene_biotype: protein_coding
description:
  PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; COGs: COG0625 Glutathione S-transferase; InterPro IPR004045:IPR004046; KEGG: syf:Synpcc7942_2139 glutathione S-transferase; PFAM: Glutathione S-transferase, C-terminal; Glutathione S-transferase, N-terminal; SPTR: Probable glutathione S-transferase.


ensembl_gene_id: Turpa_2445
symbol: AFM13087.1
gene_biotype: protein_coding
description:
  PFAM: EAL domain; Response regulator receiver domain; COGs: COG2200 FOG: EAL domain; InterPro IPR001789:IPR001633; KEGG: dba:Dbac_2663 diguanylate cyclase/phosphodiesterase; PFAM: Diguanylate phosphodiesterase, predicted; Signal transduction response regulator, receiver region; SMART: Diguanylate phosphodiesterase, predicted; Signal transduction response regulator, receiver region; SPTR: Diguanylate phosphodiesterase.


ensembl_gene_id: Turpa_2447
symbol: atpB
gene_biotype: protein_coding
description:
  ATP synthase F0 subcomplex A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.


ensembl_gene_id: Turpa_2448
symbol: atpE
gene_biotype: protein_coding
description:
  ATP synthase subunit c; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: Turpa_2449
symbol: atpF
gene_biotype: protein_coding
description:
  ATP synthase F0 subcomplex B subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.


ensembl_gene_id: Turpa_2450
symbol: atpH
gene_biotype: protein_coding
description:
  ATP synthase F1 subcomplex delta subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family.


ensembl_gene_id: Turpa_2451
symbol: atpA
gene_biotype: protein_coding
description:
  ATP synthase F1 subcomplex alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.


ensembl_gene_id: Turpa_2452
symbol: atpG
gene_biotype: protein_coding
description:
  ATP synthase F1 subcomplex gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.


ensembl_gene_id: Turpa_2453
symbol: atpD
gene_biotype: protein_coding
description:
  ATP synthase F1 subcomplex beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.


ensembl_gene_id: Turpa_2454
symbol: atpC
gene_biotype: protein_coding
description:
  ATP synthase F1 subcomplex epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.


ensembl_gene_id: Turpa_2455
symbol: AFM13097.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial regulatory proteins, tetR family; InterPro IPR001647; KEGG: mmi:MMAR_0334 TetR family transcriptional regulator; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulatory protein (Probably TetR-family).


ensembl_gene_id: Turpa_2456
symbol: AFM13098.1
gene_biotype: protein_coding
description:
  PFAM: SNARE associated Golgi protein; COGs: COG0586 membrane-associated protein; InterPro IPR015414; KEGG: plm:Plim_2073 hypothetical protein; PFAM: SNARE associated Golgi protein; SPTR: SNARE associated Golgi protein-like protein.


ensembl_gene_id: Turpa_2458
symbol: AFM13100.1
gene_biotype: protein_coding
description:
  Putative lipoprotein; COGs: COG3014 conserved hypothetical protein; KEGG: lbf:LBF_0308 putative lipoprotein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2459
symbol: AFM13101.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF457, transmembrane; PFAM: Predicted membrane-bound metal-dependent hydrolase (DUF457); InterPro IPR007404; KEGG: lic:LIC11099 hypothetical protein; PFAM: Protein of unknown function DUF457, transmembrane; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2460
symbol: AFM13102.1
gene_biotype: protein_coding
description:
  methylmalonyl-CoA epimerase; KEGG: lbf:LBF_1438 hypothetical protein; SPTR: Putative lactoylglutathione lyase.


ensembl_gene_id: Turpa_2462
symbol: AFM13104.1
gene_biotype: protein_coding
description:
  PFAM: AsnC family; COGs: COG1522 Transcriptional regulators; InterPro IPR019887:IPR019888; KEGG: cth:Cthe_0362 AsnC family transcriptional regulator; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type; SPTR: Transcriptional regulator, AsnC family.


ensembl_gene_id: Turpa_2463
symbol: AFM13105.1
gene_biotype: protein_coding
description:
  InterPro IPR001440:IPR013105:IPR019734; KEGG: cyp:PCC8801_1300 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein.


ensembl_gene_id: Turpa_2464
symbol: AFM13106.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial regulatory proteins, tetR family; COGs: COG1309 Transcriptional regulator; InterPro IPR001647; KEGG: aae:aq_281 TetR/AcrR family transcriptional regulator; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator (TetR/AcrR family).


ensembl_gene_id: Turpa_2465
symbol: AFM13107.1
gene_biotype: protein_coding
description:
  PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region; COGs: COG0590 Cytosine/adenosine deaminase; InterPro IPR002125; KEGG: rme:Rmet_1573 tRNA-adenosine deaminase; PFAM: CMP/dCMP deaminase, zinc-binding; SPTR: tRNA-specific adenosine deaminase.


ensembl_gene_id: Turpa_2466
symbol: AFM13108.1
gene_biotype: protein_coding
description:
  Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.


ensembl_gene_id: Turpa_2468
symbol: AFM13110.1
gene_biotype: protein_coding
description:
  PFAM: Peptidase family S41; InterPro IPR005151; KEGG: fjo:Fjoh_3843 peptidase S41; PFAM: Peptidase S41; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2469
symbol: AFM13111.1
gene_biotype: protein_coding
description:
  Beta-lactamase; PFAM: N-acetylmuramoyl-L-alanine amidase; Beta-lactamase; COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR002502:IPR001466; KEGG: fbc:FB2170_11406 hypothetical protein; PFAM: Beta-lactamase-related; N-acetylmuramoyl-L-alanine amidase, family 2; SMART: N-acetylmuramoyl-L-alanine amidase, family 2; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2470
symbol: AFM13112.1
gene_biotype: protein_coding
description:
  Methyltransferase type 11; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; COGs: COG2230 Cyclopropane fatty acid synthase and related methyltransferase; InterPro IPR013216; KEGG: pbs:Plabr_2028 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11.


ensembl_gene_id: Turpa_2471
symbol: AFM13113.1
gene_biotype: protein_coding
description:
  Regulatory protein MerR; InterPro IPR000551; KEGG: dmr:Deima_2477 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR; SPTR: Transcriptional regulator, MerR family.


ensembl_gene_id: Turpa_2472
symbol: AFM13114.1
gene_biotype: protein_coding
description:
  Amine oxidase; PFAM: Flavin containing amine oxidoreductase; COGs: COG2907 NAD/FAD-binding protein; InterPro IPR002937; KEGG: lbf:LBF_4108 NAD/FAD-binding protein; PFAM: Amine oxidase; SPTR: Putative dehydrogenase.


ensembl_gene_id: Turpa_2473
symbol: AFM13115.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function (DUF1365); COGs: COG3496 conserved hypothetical protein; InterPro IPR010775; KEGG: tgr:Tgr7_1389 hypothetical protein; PFAM: Protein of unknown function DUF1365; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2474
symbol: AFM13116.1
gene_biotype: protein_coding
description:
  PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; COGs: COG2230 Cyclopropane fatty acid synthase and related methyltransferase; InterPro IPR003333; KEGG: meh:M301_1477 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; SPTR: Cyclopropane-fatty-acyl-phospholipid synthase.


ensembl_gene_id: Turpa_2476
symbol: AFM13118.1
gene_biotype: protein_coding
description:
  PFAM: Major Facilitator Superfamily; COGs: COG2211 Na+/melibiose symporter and related transporter; InterPro IPR011701; KEGG: lbf:LBF_0571 Na+/melibiose symporter-like transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Permease, MFS superfamily.


ensembl_gene_id: Turpa_2477
symbol: xerC
gene_biotype: protein_coding
description:
  Tyrosine recombinase XerC subunit; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: Turpa_2478
symbol: AFM13120.1
gene_biotype: protein_coding
description:
  PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16); COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765:IPR007863; KEGG: lbj:LBJ_2386 Zn-dependent peptidase; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; SPTR: Zn-dependent peptidase; Belongs to the peptidase M16 family.


ensembl_gene_id: Turpa_2480
symbol: AFM13122.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; COGs: COG2171 Tetrahydrodipicolinate N-succinyltransferase; InterPro IPR001451; KEGG: wvi:Weevi_1918 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; SPTR: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family.


ensembl_gene_id: Turpa_2483
symbol: AFM13124.1
gene_biotype: protein_coding
description:
  Cyclic pyranopterin monophosphate synthase subunit MoaC; PFAM: MoaC family; Probable molybdopterin binding domain; TIGRFAM: molybdenum cofactor biosynthesis protein MoaC; molybdenum cofactor synthesis domain; COGs: COG0315 Molybdenum cofactor biosynthesis enzyme; InterPro IPR020817:IPR002820:IPR001453; KEGG: lbf:LBF_2684 bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; PFAM: Molybdopterin cofactor biosynthesis MoaC region; Molybdopterin binding; SPTR: Molybdenum cofactor biosynthesis bifunctional protein: molybdenum cofactor biosynthesis protein C/molybdenum cofactor bi [...]


ensembl_gene_id: Turpa_2484
symbol: AFM13125.1
gene_biotype: protein_coding
description:
  Molybdenum cofactor synthesis domain protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.


ensembl_gene_id: Turpa_2485
symbol: AFM13126.1
gene_biotype: protein_coding
description:
  Cyclic pyranopterin monophosphate synthase subunit MoaA; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.


ensembl_gene_id: Turpa_2487
symbol: AFM13128.1
gene_biotype: protein_coding
description:
  PFAM: MoaE protein; COGs: COG0314 Molybdopterin converting factor large subunit; InterPro IPR003448; KEGG: chu:CHU_1324 molybdopterin synthase subunit MoaE; PFAM: Molybdopterin biosynthesis MoaE; SPTR: Molybdopterin synthase subunit MoaE.


ensembl_gene_id: Turpa_2488
symbol: AFM13129.1
gene_biotype: protein_coding
description:
  Hypothetical protein; COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; KEGG: tde:TDE1728 hypothetical protein; SPTR: Putative uncharacterized protein; Belongs to the peptidase S1B family.


ensembl_gene_id: Turpa_2489
symbol: AFM13130.1
gene_biotype: protein_coding
description:
  UBA/THIF-type NAD/FAD binding protein; PFAM: MoeZ/MoeB domain; ThiF family; COGs: COG0476 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 2; InterPro IPR000594:IPR007901; KEGG: svo:SVI_1923 molybdenum cofactor biosynthesis protein; PFAM: UBA/THIF-type NAD/FAD binding fold; MoeZ/MoeB; SPTR: Molybdenum cofactor biosynthesis protein.


ensembl_gene_id: Turpa_2490
symbol: AFM13131.1
gene_biotype: protein_coding
description:
  Abortive phage infection protein; PFAM: AIPR protein; InterPro IPR018891; KEGG: bcm:Bcenmc03_0195 hypothetical protein; PFAM: Abortive phage infection; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2492
symbol: AFM13132.1
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: dse:Dsec_GM18084 GM18084 gene product from transcript GM18084-RA; SPTR: Dumpy.


ensembl_gene_id: Turpa_2493
symbol: AFM13133.1
gene_biotype: protein_coding
description:
  PFAM: HpcH/HpaI aldolase/citrate lyase family; COGs: COG2301 Citrate lyase beta subunit; InterPro IPR005000; KEGG: meh:M301_0689 HpcH/HpaI aldolase; PFAM: HpcH/HpaI aldolase; SPTR: HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.


ensembl_gene_id: Turpa_2494
symbol: AFM13134.1
gene_biotype: protein_coding
description:
  ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; Cation transporting ATPase, C-terminus; Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; Cation transporter/ATPase, N-terminus; haloacid dehalogenase-like hydrolase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; COGs: COG0474 Cation transport ATPase; InterPro IPR001757:IPR002178:IPR004014:IPR008250:IPR005834:IPR0060 68; KEGG: lbf:LBF_2665 cation transport ATPase; PFAM: ATPase, P-type, ATPase-associated region; ATPase, P-type cation-transporter, N-terminal; Ph [...]


ensembl_gene_id: Turpa_2495
symbol: AFM13135.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial regulatory proteins, tetR family; COGs: COG1309 Transcriptional regulator; InterPro IPR001647; KEGG: dal:Dalk_4892 transcriptional regulator, TetR family; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family.


ensembl_gene_id: Turpa_2496
symbol: AFM13136.1
gene_biotype: protein_coding
description:
  Alkylhydroperoxidase like protein, AhpD family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.


ensembl_gene_id: Turpa_2498
symbol: AFM13138.1
gene_biotype: protein_coding
description:
  Alpha/beta hydrolase fold containing protein; COGs: COG3243 Poly(3-hydroxyalkanoate) synthetase; InterPro IPR000073; KEGG: lbl:LBL_0364 alpha/beta fold family hydrolase/acetyltransferase; PFAM: Alpha/beta hydrolase fold-1; SPTR: Hydrolases or acyltransferases, alpha/beta hydrolase superfamily.


ensembl_gene_id: Turpa_2499
symbol: AFM13139.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function, DUF486; COGs: COG3169 conserved hypothetical protein; InterPro IPR007437; KEGG: sli:Slin_3452 hypothetical protein; PFAM: Protein of unknown function DUF486; SPTR: Putative uncharacterized protein; manually curated.


ensembl_gene_id: Turpa_2501
symbol: AFM13141.1
gene_biotype: protein_coding
description:
  PilT protein domain protein; PFAM: PIN domain; InterPro IPR002716; KEGG: PIN domain protein; PFAM: PilT protein, N-terminal; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2503
symbol: AFM13143.1
gene_biotype: protein_coding
description:
  PFAM: TonB-dependent Receptor Plug Domain; InterPro IPR012910; KEGG: lbf:LBF_2912 TonB dependent receptor; PFAM: TonB-dependent receptor, plug; SPTR: TonB dependent receptor.


ensembl_gene_id: Turpa_2504
symbol: AFM13144.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Transposase IS200 like; KEGG: rrs:RoseRS_2688 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated.


ensembl_gene_id: Turpa_2505
symbol: AFM13145.1
gene_biotype: protein_coding
description:
  PFAM: DSBA-like thioredoxin domain; COGs: COG3531 protein-disulfide isomerase; InterPro IPR001853; KEGG: pzu:PHZ_c1818 dithiol-disulfide isomerase; PFAM: DSBA oxidoreductase; SPTR: Dithiol-disulfide isomerase.


ensembl_gene_id: Turpa_2507
symbol: AFM13147.1
gene_biotype: protein_coding
description:
  PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain; COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090; KEGG: lic:LIC13281 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region; SPTR: Acyl-CoA dehydrogenase.


ensembl_gene_id: Turpa_2508
symbol: AFM13148.1
gene_biotype: protein_coding
description:
  PFAM: MMPL family; COGs: COG1033 exporter of the RND superfamily protein; KEGG: acp:A2cp1_4296 exporters of the RND superfamily; SPTR: Exporters of the RND superfamily.


ensembl_gene_id: Turpa_2510
symbol: AFM13150.1
gene_biotype: protein_coding
description:
  PFAM: Pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; COGs: COG1252 NADH dehydrogenase FAD-containing subunit; InterPro IPR006076:IPR001327; KEGG: nit:NAL212_2386 FAD dependent oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; FAD dependent oxidoreductase; SPTR: FAD-dependent pyridine nucleotide-disulfide oxidoreductase.


ensembl_gene_id: Turpa_2511
symbol: AFM13151.1
gene_biotype: protein_coding
description:
  PFAM: HpcH/HpaI aldolase/citrate lyase family; InterPro IPR005000; KEGG: lbl:LBL_1984 hypothetical protein; PFAM: HpcH/HpaI aldolase; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2512
symbol: thrB
gene_biotype: protein_coding
description:
  Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.


ensembl_gene_id: Turpa_2513
symbol: AFM13153.1
gene_biotype: protein_coding
description:
  PFAM: CutA1 divalent ion tolerance protein; COGs: COG1324 conserved hypothetical protein involved in tolerance to divalent cations; InterPro IPR004323; KEGG: lbf:LBF_4229 divalent ion tolerance protein; PFAM: Divalent ion tolerance protein, CutA1; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2514
symbol: AFM13154.1
gene_biotype: protein_coding
description:
  PFAM: Histone deacetylase domain; COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; InterPro IPR000286; KEGG: lbl:LBL_0820 deacetylase; PFAM: Histone deacetylase superfamily; SPTR: Deacetylase.


ensembl_gene_id: Turpa_2516
symbol: hisA
gene_biotype: protein_coding
description:
  1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino) imidazole-4-carboxamide isomerase; PFAM: Histidine biosynthesis protein; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; COGs: COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase; HAMAP: 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; InterPro IPR006062; KEGG: fjo:Fjoh_2873 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: Histidine biosynthesis; SPTR: 1-(5-phospho [...]


ensembl_gene_id: Turpa_2517
symbol: hisH
gene_biotype: protein_coding
description:
  Imidazole glycerol phosphate synthase subunit hisH; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.


ensembl_gene_id: Turpa_2518
symbol: hisB
gene_biotype: protein_coding
description:
  PFAM: Imidazoleglycerol-phosphate dehydratase; COGs: COG0131 Imidazoleglycerol-phosphate dehydratase; HAMAP: Imidazoleglycerol-phosphate dehydratase; InterPro IPR000807; KEGG: lbf:LBF_0841 imidazoleglycerol-phosphate dehydratase or histidinol-phosphatase; PFAM: Imidazoleglycerol-phosphate dehydratase; SPTR: Imidazoleglycerol-phosphate dehydratase; manually curated.


ensembl_gene_id: Turpa_2519
symbol: AFM13159.1
gene_biotype: protein_coding
description:
  Putative phosphate transport regulator; PFAM: Protein of unknown function DUF47; TIGRFAM: TIGR00153 family protein; COGs: COG1392 Phosphate transport regulator (distant homolog of PhoU); InterPro IPR018445; KEGG: shg:Sph21_1370 putative phosphate transport regulator; PFAM: Putitive phosphate transport regulator; SPTR: Putative phosphate transport regulator.


ensembl_gene_id: Turpa_2520
symbol: AFM13160.1
gene_biotype: protein_coding
description:
  PFAM: Phosphate transporter family; COGs: COG0306 Phosphate/sulphate permease; InterPro IPR001204; KEGG: cpi:Cpin_0180 phosphate transporter; PFAM: Phosphate transporter; SPTR: Phosphate transporter.


ensembl_gene_id: Turpa_2522
symbol: AFM13162.1
gene_biotype: protein_coding
description:
  PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR011545:IPR001650:IPR014001; KEGG: geo:Geob_3303 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: DEAD/DEAH box helicase domain protein.


ensembl_gene_id: Turpa_2524
symbol: AFM13164.1
gene_biotype: protein_coding
description:
  PFAM: Dienelactone hydrolase family; COGs: COG0412 Dienelactone hydrolase; InterPro IPR002925; KEGG: lbf:LBF_2993 dienelactone hydrolase-like protein; PFAM: Dienelactone hydrolase; SPTR: Putative carboxymethylenebutenolidase.


ensembl_gene_id: Turpa_2525
symbol: AFM13165.1
gene_biotype: protein_coding
description:
  acetyl-CoA acetyltransferase; PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases; COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR002155; KEGG: lic:LIC12795 acetyl-CoA acetyltransferase; SPTR: Acetyl-CoA acetyltransferase; TIGRFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Turpa_2526
symbol: AFM13166.1
gene_biotype: protein_coding
description:
  PFAM: Electron transfer flavoprotein domain; Electron transfer flavoprotein FAD-binding domain; COGs: COG2025 Electron transfer flavoprotein alpha subunit; InterPro IPR014730:IPR014731; KEGG: lbl:LBL_0679 electron transfer flavoprotein subunit alpha; PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SPTR: Electron transfer flavoprotein, alpha subunit.


ensembl_gene_id: Turpa_2527
symbol: AFM13167.1
gene_biotype: protein_coding
description:
  PFAM: Electron transfer flavoprotein domain; COGs: COG2086 Electron transfer flavoprotein beta subunit; InterPro IPR014730; KEGG: lbf:LBF_1091 electron transfer flavoprotein subunit beta; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SPTR: Electron transfer flavoprotein beta-subunit (Beta-ETF; Electron transfer flavoprotein small subunit) (ETFSS).


ensembl_gene_id: Turpa_2528
symbol: AFM13168.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial regulatory protein, arsR family; InterPro IPR001845; KEGG: fno:Fnod_1486 regulatory protein ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: Regulatory protein ArsR.


ensembl_gene_id: Turpa_2532
symbol: AFM13172.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function (DUF1009); COGs: COG3494 conserved hypothetical protein; InterPro IPR010415; KEGG: lic:LIC12578 hypothetical protein; PFAM: Protein of unknown function DUF1009; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2533
symbol: AFM13173.1
gene_biotype: protein_coding
description:
  Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.


ensembl_gene_id: Turpa_2534
symbol: AFM13174.1
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport system inner membrane component; COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: lbf:LBF_2738 ABC transporter permease; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: ABC-type transport system, binding-protein-dependent transport system, inner membrane component.


ensembl_gene_id: Turpa_2535
symbol: AFM13175.1
gene_biotype: protein_coding
description:
  ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport system inner membrane component; COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: xau:Xaut_2762 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: Turpa_2537
symbol: AFM13177.1
gene_biotype: protein_coding
description:
  InterPro IPR001440:IPR013105:IPR019734; KEGG: ank:AnaeK_3070 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SPTR: Tetratricopeptide TPR_2 repeat protein.


ensembl_gene_id: Turpa_2538
symbol: AFM13178.1
gene_biotype: protein_coding
description:
  Flagellar protein FlgJ; PFAM: Rod binding protein; InterPro IPR019301; KEGG: lbf:LBF_1483 cell envelope rod binding protein; PFAM: Flagellar protein FlgJ, N-terminal; SPTR: Peptidoglycan hydrolase FlgJ (Muramidase FlgJ).


ensembl_gene_id: Turpa_2540
symbol: flgI
gene_biotype: protein_coding
description:
  Flagellar P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.


ensembl_gene_id: Turpa_2541
symbol: AFM13181.1
gene_biotype: protein_coding
description:
  PFAM: Flagellar L-ring protein; KEGG: lbf:LBF_1481 endoflagellar basal body L-ring protein; SPTR: Flagellar L-ring protein (Basal body L-ring protein).


ensembl_gene_id: Turpa_2543
symbol: AFM13183.1
gene_biotype: protein_coding
description:
  Flagellar basal-body rod protein FlgG; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: fagellar hook-basal body proteins; flagellar basal-body rod protein FlgG, Gram-negative bacteria; COGs: COG4786 Flagellar basal body rod protein; InterPro IPR020013:IPR012834:IPR001444:IPR010930; KEGG: lbl:LBL_1089 flagellar basal body rod protein FlgG; PFAM: Protein of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal; SPTR: Endoflagellar distal basal body rod protein; TIGRFAM: Flagellar basal-body rod FlgG; Fagellar hook-basal b [...]


ensembl_gene_id: Turpa_2545
symbol: AFM13185.1
gene_biotype: protein_coding
description:
  FAD dependent oxidoreductase; PFAM: Flavin-binding monooxygenase-like; COGs: COG2072 flavoprotein involved in K+ transport; InterPro IPR006076; KEGG: mgi:Mflv_4608 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: Monooxygenase.


ensembl_gene_id: Turpa_2547
symbol: tuf
gene_biotype: protein_coding
description:
  Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.


ensembl_gene_id: Turpa_2548
symbol: rpsJ
gene_biotype: protein_coding
description:
  SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.


ensembl_gene_id: Turpa_2549
symbol: AFM13189.1
gene_biotype: protein_coding
description:
  PFAM: Ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3, bacterial; COGs: COG0087 Ribosomal protein L3; InterPro IPR019927:IPR000597; KEGG: tam:Theam_0257 50S ribosomal protein L3; PFAM: Ribosomal protein L3; SPTR: 50S ribosomal protein L3; TIGRFAM: Ribosomal protein L3, bacterial/organelle-type.


ensembl_gene_id: Turpa_2551
symbol: rplW
gene_biotype: protein_coding
description:
  LSU ribosomal protein L23P; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.


ensembl_gene_id: Turpa_2552
symbol: rplB
gene_biotype: protein_coding
description:
  LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.


ensembl_gene_id: Turpa_2553
symbol: rpsS
gene_biotype: protein_coding
description:
  SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.


ensembl_gene_id: Turpa_2554
symbol: rplV
gene_biotype: protein_coding
description:
  LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.


ensembl_gene_id: Turpa_2555
symbol: rpsC
gene_biotype: protein_coding
description:
  SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.


ensembl_gene_id: Turpa_2556
symbol: rplP
gene_biotype: protein_coding
description:
  50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.


ensembl_gene_id: Turpa_2557
symbol: rpmC
gene_biotype: protein_coding
description:
  PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29; InterPro IPR001854; KEGG: LSU ribosomal protein L29P; PFAM: Ribosomal protein L29; SPTR: Putative uncharacterized protein; TIGRFAM: Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.


ensembl_gene_id: Turpa_2558
symbol: rpsQ
gene_biotype: protein_coding
description:
  30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.


ensembl_gene_id: Turpa_2559
symbol: rplN
gene_biotype: protein_coding
description:
  LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.


ensembl_gene_id: Turpa_2560
symbol: rplX
gene_biotype: protein_coding
description:
  LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.


ensembl_gene_id: Turpa_2561
symbol: rplE
gene_biotype: protein_coding
description:
  LSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.


ensembl_gene_id: Turpa_2562
symbol: rpsZ
gene_biotype: protein_coding
description:
  Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.


ensembl_gene_id: Turpa_2563
symbol: rpsH
gene_biotype: protein_coding
description:
  Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.


ensembl_gene_id: Turpa_2564
symbol: rplF
gene_biotype: protein_coding
description:
  Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.


ensembl_gene_id: Turpa_2565
symbol: rplR
gene_biotype: protein_coding
description:
  LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.


ensembl_gene_id: Turpa_2566
symbol: rpsE
gene_biotype: protein_coding
description:
  SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.


ensembl_gene_id: Turpa_2567
symbol: rpmD
gene_biotype: protein_coding
description:
  PFAM: Ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle; InterPro IPR005996:IPR000517; KEGG: rmr:Rmar_0860 50S ribosomal protein L30; PFAM: Ribosomal protein L30p/L7e, conserved region; SPTR: 50S ribosomal protein L30; TIGRFAM: Ribosomal protein L30, bacterial-type.


ensembl_gene_id: Turpa_2568
symbol: rplO
gene_biotype: protein_coding
description:
  LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.


ensembl_gene_id: Turpa_2569
symbol: secY
gene_biotype: protein_coding
description:
  Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.


ensembl_gene_id: Turpa_2570
symbol: adk
gene_biotype: protein_coding
description:
  Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.


ensembl_gene_id: Turpa_2571
symbol: map
gene_biotype: protein_coding
description:
  Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.


ensembl_gene_id: Turpa_2572
symbol: rpmJ
gene_biotype: protein_coding
description:
  PFAM: Ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type; HAMAP: Ribosomal protein L36; InterPro IPR000473; KEGG: sur:STAUR_3761 50S ribosomal protein L36; PFAM: Ribosomal protein L36; SPTR: 50S ribosomal protein L36; TIGRFAM: Ribosomal protein L36; manually curated; Belongs to the bacterial ribosomal protein bL36 family.


ensembl_gene_id: Turpa_2573
symbol: rpsM
gene_biotype: protein_coding
description:
  SSU ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.


ensembl_gene_id: Turpa_2574
symbol: rpsK
gene_biotype: protein_coding
description:
  SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.


ensembl_gene_id: Turpa_2575
symbol: rpsD
gene_biotype: protein_coding
description:
  Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.


ensembl_gene_id: Turpa_2576
symbol: rpoA
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: Turpa_2577
symbol: rplQ
gene_biotype: protein_coding
description:
  PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17; COGs: COG0203 Ribosomal protein L17; HAMAP: 50S ribosomal protein L17; InterPro IPR000456; KEGG: lbl:LBL_0481 50S ribosomal protein L17; PFAM: Ribosomal protein L17; SPTR: 50S ribosomal protein L17; TIGRFAM: Ribosomal protein L17.


ensembl_gene_id: Turpa_2578
symbol: alaS
gene_biotype: protein_coding
description:
  alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.


ensembl_gene_id: Turpa_2579
symbol: acpS
gene_biotype: protein_coding
description:
  Holo-(acyl-carrier-protein) synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.


ensembl_gene_id: Turpa_2580
symbol: ruvB
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.


ensembl_gene_id: Turpa_2582
symbol: AFM13222.1
gene_biotype: protein_coding
description:
  2-octaprenylphenol hydroxylase; PFAM: ABC1 family; COGs: COG0661 unusual protein kinase; InterPro IPR004147; KEGG: gem:GM21_3359 ABC-1 domain protein; PFAM: ABC-1; SPTR: ABC-1 domain protein.


ensembl_gene_id: Turpa_2583
symbol: AFM13223.1
gene_biotype: protein_coding
description:
  Biotin/lipoyl attachment domain-containing protein; PFAM: Biotin-requiring enzyme; COGs: COG4770 Acetyl/propionyl-CoA carboxylase alpha subunit; InterPro IPR000089; KEGG: fre:Franean1_4048 carbamoyl-phosphate synthase L chain ATP-binding; PFAM: Biotin/lipoyl attachment; SPTR: Carbamoyl-phosphate synthase L chain ATP-binding.


ensembl_gene_id: Turpa_2584
symbol: AFM13224.1
gene_biotype: protein_coding
description:
  PFAM: NUDIX domain; InterPro IPR000086; KEGG: ipo:Ilyop_0684 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase.


ensembl_gene_id: Turpa_2586
symbol: AFM13226.1
gene_biotype: protein_coding
description:
  PFAM: TonB-dependent Receptor Plug Domain; InterPro IPR012910:IPR000531; KEGG: lbf:LBF_2912 TonB dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB dependent receptor.


ensembl_gene_id: Turpa_2587
symbol: AFM13227.1
gene_biotype: protein_coding
description:
  PFAM: Cyclic nucleotide-binding domain; InterPro IPR000595; KEGG: lbf:LBF_2519 cAMP-binding protein; PFAM: Cyclic nucleotide-binding; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2588
symbol: AFM13228.1
gene_biotype: protein_coding
description:
  PFAM: Ribosomal RNA adenine dimethylase; COGs: COG0030 Dimethyladenosine transferase (rRNA methylation); InterPro IPR001737:IPR020598; KEGG: kfl:Kfla_5727 dimethyladenosine transferase; PFAM: Ribosomal RNA adenine methylase transferase; SMART: Ribosomal RNA adenine methylase transferase, N-terminal; SPTR: Ribosomal RNA small subunit methyltransferase A; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.


ensembl_gene_id: Turpa_2589
symbol: AFM13229.1
gene_biotype: protein_coding
description:
  RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: Turpa_2590
symbol: AFM13230.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: FAD binding domain; COGs: COG1233 Phytoene dehydrogenase and related protein; KEGG: amr:AM1_6095 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2592
symbol: AFM13232.1
gene_biotype: protein_coding
description:
  PFAM: FecR protein; KEGG: tin:Tint_2969 peptidoglycan-binding lysin domain protein; SPTR: Putative LysM motif protein.


ensembl_gene_id: Turpa_2594
symbol: ribH
gene_biotype: protein_coding
description:
  6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.


ensembl_gene_id: Turpa_2595
symbol: nusB
gene_biotype: protein_coding
description:
  NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.


ensembl_gene_id: Turpa_2597
symbol: AFM13237.1
gene_biotype: protein_coding
description:
  Zn-dependent hydrolase; PFAM: Metallo-beta-lactamase superfamily; KEGG: lbf:LBF_0761 Zn-dependent hydrolase; SPTR: Putative metallo-beta-lactamase.


ensembl_gene_id: Turpa_2599
symbol: AFM13239.1
gene_biotype: protein_coding
description:
  PFAM: Stage II sporulation protein E (SpoIIE); InterPro IPR010822:IPR001932; KEGG: lbf:LBF_1997 serine phosphatase RsbU; PFAM: Sporulation stage II, protein E C-terminal; SMART: Protein phosphatase 2C-related; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2600
symbol: AFM13240.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF2309; PFAM: Uncharacterized protein conserved in bacteria (DUF2309); COGs: COG3002 conserved hypothetical protein; InterPro IPR018752; KEGG: hypothetical protein; PFAM: Protein of unknown function DUF2309; SPTR: UPF0753 protein Slin_1124; Belongs to the UPF0753 family.


ensembl_gene_id: Turpa_2601
symbol: AFM13241.1
gene_biotype: protein_coding
description:
  PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter MnhA subunit; InterPro IPR001516:IPR001750; KEGG: avn:Avin_17880 NADH-ubiquinone oxidoreductase, chain 5; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal; SPTR: NADH-ubiquinone oxidoreductase, chain 5.


ensembl_gene_id: Turpa_2603
symbol: AFM13243.1
gene_biotype: protein_coding
description:
  PFAM: Sulfate transporter family; STAS domain; COGs: COG0659 Sulfate permease and related transporter (MFS superfamily); InterPro IPR011547:IPR002645; KEGG: lbf:LBF_2927 permease; PFAM: Sulphate transporter; Sulphate transporter/antisigma-factor antagonist STAS; SPTR: Putative sulfate transporter family protein.


ensembl_gene_id: Turpa_2607
symbol: metZ
gene_biotype: protein_coding
description:
  O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.


ensembl_gene_id: Turpa_2608
symbol: AFM13248.1
gene_biotype: protein_coding
description:
  PFAM: OsmC-like protein; COGs: COG1765 redox protein regulator of disulfide bond formation; InterPro IPR003718; KEGG: lbf:LBF_4142 redox protein, regulator of disulfide bond formation; PFAM: Peroxiredoxin, OsmC-like protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2609
symbol: AFM13249.1
gene_biotype: protein_coding
description:
  Protein translocase subunit secG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.


ensembl_gene_id: Turpa_2610
symbol: AFM13250.1
gene_biotype: protein_coding
description:
  Fructose-1,6-bisphosphatase, class II; PFAM: Bacterial fructose-1,6-bisphosphatase, glpX-encoded; TIGRFAM: fructose-1,6-bisphosphatase, class II; COGs: COG1494 Fructose-1 6-bisphosphatase/sedoheptulose 1 7-bisphosphatase and related protein; InterPro IPR004464; KEGG: bba:Bd1919 fructose 1,6-bisphosphatase II; PFAM: GlpX; SPTR: Fructose-1,6-bisphosphatase class II GlpX; TIGRFAM: GlpX.


ensembl_gene_id: Turpa_2612
symbol: AFM13252.1
gene_biotype: protein_coding
description:
  PFAM: Cytochrome b(N-terminal)/b6/petB; InterPro IPR011577; KEGG: sun:SUN_1815 cytochrome b; SPTR: Cytochrome b.


ensembl_gene_id: Turpa_2613
symbol: AFM13253.1
gene_biotype: protein_coding
description:
  PFAM: TonB-dependent Receptor Plug Domain; COGs: COG4772 Outer membrane receptor for Fe3+-dicitrate; InterPro IPR012910:IPR000531; KEGG: ccs:CCNA_00138 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor.


ensembl_gene_id: Turpa_2614
symbol: AFM13254.1
gene_biotype: protein_coding
description:
  TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain; COGs: COG0810 Periplasmic protein TonB links inner and outer membranes; InterPro IPR006260; KEGG: hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: TonB, C-terminal.


ensembl_gene_id: Turpa_2616
symbol: AFM13256.1
gene_biotype: protein_coding
description:
  PFAM: Fatty acid hydroxylase superfamily; COGs: COG3000 Sterol desaturase; InterPro IPR006694; KEGG: mil:ML5_5033 fatty acid hydroxylase; PFAM: Fatty acid hydroxylase; SPTR: Sterol desaturase.


ensembl_gene_id: Turpa_2617
symbol: AFM13257.1
gene_biotype: protein_coding
description:
  Globin; PFAM: Bacterial-like globin; COGs: COG2346 Truncated hemoglobins; InterPro IPR001486; KEGG: hypothetical protein; PFAM: Globin, truncated bacterial-like; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2618
symbol: srkA
gene_biotype: protein_coding
description:
  Aminoglycoside phosphotransferase; A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response.


ensembl_gene_id: Turpa_2620
symbol: AFM13260.1
gene_biotype: protein_coding
description:
  Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase; COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: mxa:MXAN_5909 short chain dehydrogenase/reductase family oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Uncharacterized oxidoreductase MXAN_5909; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Turpa_2621
symbol: AFM13261.1
gene_biotype: protein_coding
description:
  Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.


ensembl_gene_id: Turpa_2622
symbol: infB
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.


ensembl_gene_id: Turpa_2624
symbol: rimP
gene_biotype: protein_coding
description:
  Ribosome maturation factor rimP; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.


ensembl_gene_id: Turpa_2625
symbol: AFM13265.1
gene_biotype: protein_coding
description:
  PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor; InterPro IPR003658:IPR002645; KEGG: tcu:Tcur_4828 anti-sigma-factor antagonist; PFAM: Sulphate transporter/antisigma-factor antagonist STAS; SPTR: Anti-sigma factor antagonist; TIGRFAM: Anti-sigma factor antagonist.


ensembl_gene_id: Turpa_2626
symbol: trpB
gene_biotype: protein_coding
description:
  Tryptophan synthase, beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.


ensembl_gene_id: Turpa_2627
symbol: ispF
gene_biotype: protein_coding
description:
  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).


ensembl_gene_id: Turpa_2628
symbol: AFM13268.1
gene_biotype: protein_coding
description:
  PFAM: Major Facilitator Superfamily; InterPro IPR011701; KEGG: vex:VEA_000497 hypothetical protein; PFAM: Major facilitator superfamily MFS-1; SPTR: Putative drug transport transmembrane protein.


ensembl_gene_id: Turpa_2630
symbol: AFM13270.1
gene_biotype: protein_coding
description:
  PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; ACT domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; TIGRFAM: D-3-phosphoglycerate dehydrogenase; COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR006236:IPR006139:IPR006140:IPR002912; KEGG: mta:Moth_0020 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; Amino acid-binding ACT; SPTR: D-3-phosphoglycerate dehydrogenase; TIGRFAM: D-3-phosphogl [...]


ensembl_gene_id: Turpa_2631
symbol: AFM13271.1
gene_biotype: protein_coding
description:
  Methyltransferase type 11; PFAM: Methyltransferase domain; InterPro IPR013216; KEGG: sus:Acid_2376 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11.


ensembl_gene_id: Turpa_2632
symbol: AFM13272.1
gene_biotype: protein_coding
description:
  PFAM: Glycosyl transferase family 2; COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: geo:Geob_2114 glycosyl transferase family 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase family 2.


ensembl_gene_id: Turpa_2634
symbol: AFM13274.1
gene_biotype: protein_coding
description:
  PFAM: Antibiotic biosynthesis monooxygenase; COGs: COG2329 Uncharacterized protein involved in biosynthesis of extracellular polysaccharides; InterPro IPR007138; KEGG: mpt:Mpe_A3555 hypothetical protein; PFAM: Antibiotic biosynthesis monooxygenase; SPTR: Antibiotic biosynthesis monooxygenase domain protein.


ensembl_gene_id: Turpa_2635
symbol: AFM13275.1
gene_biotype: protein_coding
description:
  PFAM: Glycosyltransferase family 17; InterPro IPR006813; KEGG: bba:Bd1672 putative N-acetylglucosaminyltransferase; PFAM: Glycosyl transferase, family 17; SPTR: Putative N-acetylglucosaminyltransferase.


ensembl_gene_id: Turpa_2636
symbol: AFM13276.1
gene_biotype: protein_coding
description:
  PFAM: Glycosyl transferases group 1; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: sus:Acid_7409 glycosyl transferase, group 1; PFAM: Glycosyl transferase, group 1; SPTR: Mannosyltransferase B.


ensembl_gene_id: Turpa_2637
symbol: AFM13277.1
gene_biotype: protein_coding
description:
  Alpha/beta hydrolase fold containing protein; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: pap:PSPA7_2212 putative lipase; PFAM: Alpha/beta hydrolase fold-1; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2639
symbol: AFM13279.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function (DUF1239); InterPro IPR010664; PFAM: Protein of unknown function DUF1239.


ensembl_gene_id: Turpa_2640
symbol: murJ
gene_biotype: protein_coding
description:
  Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.


ensembl_gene_id: Turpa_2641
symbol: AFM13281.1
gene_biotype: protein_coding
description:
  PFAM: Glutamine amidotransferase class-I; COGs: COG0518 GMP synthase - Glutamine amidotransferase domain; InterPro IPR000991; KEGG: lsl:LSL_0172 GMP synthase; PFAM: Glutamine amidotransferase class-I, C-terminal; SPTR: GMP synthase.


ensembl_gene_id: Turpa_2642
symbol: AFM13282.1
gene_biotype: protein_coding
description:
  Thiamine-phosphate diphosphorylase; PFAM: Thiamine monophosphate synthase/TENI; TIGRFAM: thiamine-phosphate pyrophosphorylase; COGs: COG0352 Thiamine monophosphate synthase; InterPro IPR003733; KEGG: psa:PST_3757 thiamine-phosphate pyrophosphorylase; PFAM: Thiamine monophosphate synthase; SPTR: Thiamine-phosphate pyrophosphorylase.


ensembl_gene_id: Turpa_2644
symbol: AFM13284.1
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: hau:Haur_2169 LamG domain-containing protein; SPTR: PKD domain containing protein.


ensembl_gene_id: Turpa_2647
symbol: panD
gene_biotype: protein_coding
description:
  L-aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.


ensembl_gene_id: Turpa_2648
symbol: plsX
gene_biotype: protein_coding
description:
  Phosphate:acyl-(acyl carrier protein) acyltransferase; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.


ensembl_gene_id: Turpa_2651
symbol: AFM13291.1
gene_biotype: protein_coding
description:
  Surface antigen; PFAM: 3-carboxy-cis,cis-muconate lactonizing enzyme; COGs: COG3391 conserved hypothetical protein; KEGG: lic:LIC10793 surface antigen; SPTR: Surface antigen OrfC lipoprotein.


ensembl_gene_id: Turpa_2652
symbol: AFM13292.1
gene_biotype: protein_coding
description:
  PFAM: Flagellar protein (FlbD); COGs: COG1582 Uncharacterized protein possibly involved in motility; InterPro IPR009384; KEGG: flagellar FlbD family protein; PFAM: Flagellar; SPTR: Flagellar protein FlbD.


ensembl_gene_id: Turpa_2653
symbol: AFM13293.1
gene_biotype: protein_coding
description:
  Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.


ensembl_gene_id: Turpa_2654
symbol: AFM13294.1
gene_biotype: protein_coding
description:
  Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.


ensembl_gene_id: Turpa_2657
symbol: polA
gene_biotype: protein_coding
description:
  DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.


ensembl_gene_id: Turpa_2663
symbol: AFM13303.1
gene_biotype: protein_coding
description:
  PFAM: Phage integrase family; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: bhy:BHWA1_02688 integrase; PFAM: Integrase, catalytic core, phage; SPTR: Integrase.


ensembl_gene_id: Turpa_2664
symbol: AFM13304.1
gene_biotype: protein_coding
description:
  AAA ATPase central domain protein; PFAM: ATPase family associated with various cellular activities (AAA); COGs: COG0464 ATPase of the AAA+ class; InterPro IPR003959:IPR003593; KEGG: ngr:NAEGRDRAFT_48198 hypothetical protein; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2666
symbol: AFM13306.1
gene_biotype: protein_coding
description:
  Helicase domain-containing protein; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain; InterPro IPR006935:IPR001650:IPR014001; KEGG: syp:SYNPCC7002_F0092 helicase domain-containing protein; PFAM: DNA/RNA helicase, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal; SPTR: Helicase conserved C-terminal domain protein.


ensembl_gene_id: Turpa_2667
symbol: AFM13307.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function (DUF497); KEGG: nhl:Nhal_0122 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2670
symbol: AFM13310.1
gene_biotype: protein_coding
description:
  PFAM: N-6 DNA Methylase; HsdM N-terminal domain; COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR003356; KEGG: mhu:Mhun_2789 N-6 DNA methylase; PFAM: DNA methylase, adenine-specific; SPTR: N-6 DNA methylase.


ensembl_gene_id: Turpa_2671
symbol: AFM13311.1
gene_biotype: protein_coding
description:
  PFAM: Type I restriction modification DNA specificity domain; COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: par:Psyc_0878 type I restriction modification system methylase; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Probable type I restriction modification system methylase.


ensembl_gene_id: Turpa_2676
symbol: AFM13315.1
gene_biotype: protein_coding
description:
  Hypothetical protein; COGs: COG1373 ATPase (AAA+ superfamily); KEGG: cph:Cpha266_0084 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2677
symbol: AFM13316.1
gene_biotype: protein_coding
description:
  Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.


ensembl_gene_id: Turpa_2681
symbol: AFM13320.1
gene_biotype: protein_coding
description:
  HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; COGs: COG0546 phosphatase; InterPro IPR006439:IPR005834; KEGG: min:Minf_1634 HAD family hydrolase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: Haloacid dehalogenase domain protein hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1.


ensembl_gene_id: Turpa_2684
symbol: AFM13323.1
gene_biotype: protein_coding
description:
  PFAM: Fatty acid desaturase; COGs: COG3239 Fatty acid desaturase; InterPro IPR005804; KEGG: tbi:Tbis_2658 fatty acid desaturase; PFAM: Fatty acid desaturase, type 1; SPTR: Fatty acid desaturase domain protein.


ensembl_gene_id: Turpa_2685
symbol: AFM13324.1
gene_biotype: protein_coding
description:
  PFAM: 2Fe-2S iron-sulfur cluster binding domain; Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain; COGs: COG1018 Flavodoxin reductase (ferredoxin-NADPH reductase) family 1; InterPro IPR008333:IPR001433:IPR001041; KEGG: tcu:Tcur_0252 ferredoxin; PFAM: Oxidoreductase FAD-binding region; Oxidoreductase FAD/NAD(P)-binding; Ferredoxin; SPTR: Oxidoreductase, FAD-binding domain protein.


ensembl_gene_id: Turpa_2686
symbol: AFM13325.1
gene_biotype: protein_coding
description:
  A/G-specific DNA-adenine glycosylase; PFAM: HhH-GPD superfamily base excision DNA repair protein; TIGRFAM: A/G-specific adenine glycosylase; COGs: COG1194 A/G-specific DNA glycosylase; InterPro IPR000445:IPR003265; KEGG: bba:Bd3437 A/G-specific adenine glycosylase; PFAM: Helix-hairpin-helix motif; SMART: HhH-GPD domain; SPTR: A/G-specific adenine glycosylase.


ensembl_gene_id: Turpa_2687
symbol: AFM13326.1
gene_biotype: protein_coding
description:
  Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.


ensembl_gene_id: Turpa_2688
symbol: AFM13327.1
gene_biotype: protein_coding
description:
  PFAM: ABC transporter; COGs: COG1127 ABC-type transport system involved in resistance to organic solvents ATPase component; InterPro IPR003439:IPR003593; KEGG: saf:SULAZ_1668 methionine import ATP-binding protein MetN; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: Methionine import ATP-binding protein MetN.


ensembl_gene_id: Turpa_2689
symbol: AFM13328.1
gene_biotype: protein_coding
description:
  TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain; InterPro IPR006260:IPR003538; KEGG: aar:Acear_0772 TonB family protein; PFAM: Gram-negative bacterial tonB protein; SPTR: TonB family protein; TIGRFAM: TonB, C-terminal.


ensembl_gene_id: Turpa_2690
symbol: AFM13329.1
gene_biotype: protein_coding
description:
  Cysteine desulfurase; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurases, SufSfamily; COGs: COG0520 Selenocysteine lyase; InterPro IPR000192; KEGG: chl:Chy400_3752 cysteine desulfurase, SufS subfamily; PFAM: Aminotransferase, class V/Cysteine desulfurase; SPTR: Cysteine desulfurase.


ensembl_gene_id: Turpa_2692
symbol: AFM13331.1
gene_biotype: protein_coding
description:
  Ankyrin; InterPro IPR002110; KEGG: spu:757989 similar to ankyrin 2,3/unc44; SMART: Ankyrin repeat; SPTR: Pfs, NACHT and Ankyrin domain protein.


ensembl_gene_id: Turpa_2693
symbol: AFM13332.1
gene_biotype: protein_coding
description:
  Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase; COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: lic:LIC20097 short-chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Turpa_2694
symbol: AFM13333.1
gene_biotype: protein_coding
description:
  Alpha/beta hydrolase fold containing protein; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: lil:LA_2526 hydrolase; PFAM: Alpha/beta hydrolase fold-1; SPTR: Hydrolase.


ensembl_gene_id: Turpa_2695
symbol: AFM13334.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function, DUF583; COGs: COG1664 Integral membrane protein CcmA involved in cell shape determination; InterPro IPR007607; KEGG: lic:LIC10848 hypothetical protein; PFAM: Protein of unknown function DUF583; SPTR: Predicted protein involved in cell shape determination.


ensembl_gene_id: Turpa_2696
symbol: AFM13335.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Tetratricopeptide repeat; KEGG: lbf:LBF_2563 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2697
symbol: AFM13336.1
gene_biotype: protein_coding
description:
  PFAM: Mechanosensitive ion channel; COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: mja:MJ_0170 hypothetical protein; PFAM: Mechanosensitive ion channel MscS; SPTR: Uncharacterized mscS family protein MJ0170.


ensembl_gene_id: Turpa_2698
symbol: AFM13337.1
gene_biotype: protein_coding
description:
  Cyclic nucleotide-binding protein; PFAM: Phosphoribulokinase / Uridine kinase family; Cyclic nucleotide-binding domain; COGs: COG0572 Uridine kinase; InterPro IPR000595; KEGG: afw:Anae109_3852 cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; SPTR: Cyclic nucleotide-binding protein.


ensembl_gene_id: Turpa_2699
symbol: AFM13338.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function, DUF482; COGs: COG3146 conserved hypothetical protein; InterPro IPR007434; KEGG: lbj:LBJ_1907 hypothetical protein; PFAM: Protein of unknown function DUF482; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2700
symbol: AFM13339.1
gene_biotype: protein_coding
description:
  PFAM: Catalytic LigB subunit of aromatic ring-opening dioxygenase; COGs: COG3384 conserved hypothetical protein; InterPro IPR004183; KEGG: fba:FIC_00436 hypothetical protein; PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; SPTR: Putative uncharacterized protein; manually curated.


ensembl_gene_id: Turpa_2702
symbol: AFM13341.1
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: lic:LIC10559 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70.


ensembl_gene_id: Turpa_2704
symbol: AFM13343.1
gene_biotype: protein_coding
description:
  PFAM: Peptidase family M23; Bacterial SH3 domain; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR013247:IPR016047:IPR003646; KEGG: lbf:LBF_0603 metalloendoprotease; PFAM: Peptidase M23; SH3, type 3; SMART: Bacterial SH3-like region; SPTR: Putative metalloendopeptidase, M23B family; putative signal peptide.


ensembl_gene_id: Turpa_2705
symbol: AFM13344.1
gene_biotype: protein_coding
description:
  Ankyrin; InterPro IPR002110; KEGG: aas:Aasi_1435 hypothetical protein; PFAM: Ankyrin repeat; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2706
symbol: AFM13345.1
gene_biotype: protein_coding
description:
  OmpA/MotB domain protein; PFAM: OmpA family; COGs: COG1360 Flagellar motor protein; InterPro IPR006665; KEGG: lic:LIC10592 peptidoglycan-associated cytoplasmic membrane protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: Peptidoglycan-associated cytoplasmic membrane protein.


ensembl_gene_id: Turpa_2708
symbol: AFM13347.1
gene_biotype: protein_coding
description:
  PP-loop domain protein; PFAM: PP-loop family; TIGRFAM: tRNA(Ile)-lysidine synthetase, N-terminal domain; COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; InterPro IPR011063; KEGG: drt:Dret_1467 tRNA(Ile)-lysidine synthetase; PFAM: PP-loop; SPTR: tRNA(Ile)-lysidine synthase.


ensembl_gene_id: Turpa_2709
symbol: AFM13348.1
gene_biotype: protein_coding
description:
  PFAM: Peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; COGs: COG0193 Peptidyl-tRNA hydrolase; InterPro IPR001328; KEGG: lbf:LBF_0227 peptidyl-tRNA hydrolase; PFAM: Peptidyl-tRNA hydrolase; SPTR: Peptidyl-tRNA hydrolase (PTH).


ensembl_gene_id: Turpa_2710
symbol: rplY
gene_biotype: protein_coding
description:
  LSU ribosomal protein L25P; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.


ensembl_gene_id: Turpa_2711
symbol: prs
gene_biotype: protein_coding
description:
  Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.


ensembl_gene_id: Turpa_2712
symbol: AFM13351.1
gene_biotype: protein_coding
description:
  General substrate transporter; PFAM: Sugar (and other) transporter; InterPro IPR005828; KEGG: pen:PSEEN3007 major facilitator transporter; PFAM: General substrate transporter; SPTR: Putative metabolite MFS transporter, MHS family.


ensembl_gene_id: Turpa_2713
symbol: cmk
gene_biotype: protein_coding
description:
  3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate; Belongs to the cytidylate kinase family. Type 1 subfamily.


ensembl_gene_id: Turpa_2714
symbol: AFM13353.1
gene_biotype: protein_coding
description:
  SSU ribosomal protein S1P; PFAM: S1 RNA binding domain; TIGRFAM: ribosomal protein S1; COGs: COG0539 Ribosomal protein S1; InterPro IPR003029; KEGG: lbf:LBF_2515 30S ribosomal protein S1; PFAM: Ribosomal protein S1, RNA binding domain; SPTR: 30S ribosomal protein S1.


ensembl_gene_id: Turpa_2715
symbol: AFM13354.1
gene_biotype: protein_coding
description:
  ABC-2 type transporter; InterPro IPR013525; KEGG: mxa:MXAN_1548 putative membrane spanning protein; PFAM: ABC-2 type transporter; SPTR: Putative membrane spanning protein.


ensembl_gene_id: Turpa_2716
symbol: AFM13355.1
gene_biotype: protein_coding
description:
  PFAM: ABC-type uncharacterized transport system; InterPro IPR019196; KEGG: sur:STAUR_2318 ABC-type transport system involved in multi-copper enzyme maturation, membrane protein; PFAM: ABC-type uncharacterised transport system; SPTR: ABC-type transport system involved in multi-copper enzyme maturation, membrane protein.


ensembl_gene_id: Turpa_2717
symbol: AFM13356.1
gene_biotype: protein_coding
description:
  Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase; COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: mtt:Ftrac_1851 short-chain dehydrogenase/reductase sdr; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Turpa_2718
symbol: AFM13357.1
gene_biotype: protein_coding
description:
  PFAM: Redoxin; InterPro IPR000866; KEGG: tmr:Tmar_1577 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Thioredoxin.


ensembl_gene_id: Turpa_2719
symbol: kup
gene_biotype: protein_coding
description:
  Low affinity potassium transport system protein kup; Transport of potassium into the cell; Belongs to the HAK/KUP transporter (TC 2.A.72) family.


ensembl_gene_id: Turpa_2721
symbol: AFM13360.1
gene_biotype: protein_coding
description:
  PFAM: Carboxyl transferase domain; COGs: COG4799 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta); InterPro IPR000022; KEGG: rme:Rmet_0609 carboxyl transferase; PFAM: Carboxyl transferase; SPTR: Acetyl/propionyl-CoA carboxylase,carboxyltransferase subunit.


ensembl_gene_id: Turpa_2722
symbol: AFM13361.1
gene_biotype: protein_coding
description:
  PFAM: Enoyl-CoA hydratase/isomerase family; COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: par:Psyc_0310 enoyl-CoA hydratase; PFAM: Crotonase, core; SPTR: Enoyl-CoA hydratase/isomerase.


ensembl_gene_id: Turpa_2723
symbol: AFM13362.1
gene_biotype: protein_coding
description:
  Cysteine synthase; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: cysteine synthase A; cysteine synthases; COGs: COG0031 Cysteine synthase; InterPro IPR005859:IPR005856:IPR001926; KEGG: lil:LA_1719 cysteine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; SPTR: Cysteine synthase; TIGRFAM: Cysteine synthase A; Cysteine synthase K/M; Belongs to the cysteine synthase/cystathionine beta- synthase family.


ensembl_gene_id: Turpa_2726
symbol: AFM13365.1
gene_biotype: protein_coding
description:
  Protein serine/threonine phosphatase; PFAM: Stage II sporulation protein E (SpoIIE); COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR010822:IPR001932; KEGG: lic:LIC13273 sigma factor regulatory protein; PFAM: Sporulation stage II, protein E C-terminal; SMART: Protein phosphatase 2C-related; SPTR: Serine phosphatase RsbU, regulator of sigma subunit.


ensembl_gene_id: Turpa_2728
symbol: proA
gene_biotype: protein_coding
description:
  Glutamate-5-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.


ensembl_gene_id: Turpa_2729
symbol: AFM13368.1
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide adenylyltransferase; PFAM: Cytidylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain; COGs: COG1057 Nicotinic acid mononucleotide adenylyltransferase; InterPro IPR004820:IPR004821; KEGG: aac:Aaci_2015 nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: Cytidylyltransferase; SPTR: Nicotinate (Nicotinamide) nucleotide adenylyltransferase; TIGRFAM: Cytidyltransferase-related; Belongs to the NadD family.


ensembl_gene_id: Turpa_2731
symbol: AFM13370.1
gene_biotype: protein_coding
description:
  Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins.


ensembl_gene_id: Turpa_2732
symbol: AFM13371.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF540; PFAM: Etoposide-induced protein 2.4 (EI24); COGs: COG2981 Uncharacterized protein involved in cysteine biosynthesis; InterPro IPR007496; KEGG: cpi:Cpin_1193 hypothetical protein; PFAM: Protein of unknown function DUF540; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2737
symbol: AFM13376.1
gene_biotype: protein_coding
description:
  PFAM: FecR protein; InterPro IPR006860; KEGG: lic:LIC11834 putative lipoprotein; PFAM: FecR protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2739
symbol: AFM13378.1
gene_biotype: protein_coding
description:
  PFAM: Homoserine dehydrogenase, NAD binding domain; Homoserine dehydrogenase; ACT domain; COGs: COG0460 Homoserine dehydrogenase; InterPro IPR005106:IPR001342:IPR002912; KEGG: hse:Hsero_2094 homoserine dehydrogenase; PFAM: Homoserine dehydrogenase, catalytic; Aspartate/homoserine dehydrogenase, NAD-binding; Amino acid-binding ACT; SPTR: Homoserine dehydrogenase.


ensembl_gene_id: Turpa_2740
symbol: AFM13379.1
gene_biotype: protein_coding
description:
  PFAM: Conserved region in glutamate synthase; COGs: COG0069 Glutamate synthase domain 2; InterPro IPR002932; KEGG: lic:LIC20220 glutamate synthase; PFAM: Glutamate synthase, central-C; SPTR: Glutamate synthase; Belongs to the glutamate synthase family.


ensembl_gene_id: Turpa_2741
symbol: AFM13380.1
gene_biotype: protein_coding
description:
  PFAM: Ribosomal protein L11 methyltransferase (PrmA); TIGRFAM: ribosomal protein L11 methyltransferase; COGs: COG2264 Ribosomal protein L11 methylase; InterPro IPR010456; KEGG: bcy:Bcer98_3038 ribosomal protein L11 methyltransferase; PFAM: Ribosomal L11 methyltransferase; SPTR: Ribosomal protein L11 methyltransferase.


ensembl_gene_id: Turpa_2742
symbol: AFM13381.1
gene_biotype: protein_coding
description:
  PFAM: Delta-aminolevulinic acid dehydratase; COGs: COG0113 Delta-aminolevulinic acid dehydratase; InterPro IPR001731; KEGG: porphobilinogen synthase; PFAM: Tetrapyrrole biosynthesis, porphobilinogen synthase; SPTR: Porphobilinogen synthase; Belongs to the ALAD family.


ensembl_gene_id: Turpa_2743
symbol: AFM13382.1
gene_biotype: protein_coding
description:
  PFAM: Peptidase family M23; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: lbl:LBL_1002 metallopeptidase; PFAM: Peptidase M23; SPTR: Metallopeptidase.


ensembl_gene_id: Turpa_2744
symbol: AFM13383.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial trigger factor protein (TF); Bacterial trigger factor protein (TF) C-terminus; TIGRFAM: trigger factor; COGs: COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); InterPro IPR008881:IPR008880:IPR005215; KEGG: msu:MS1849 trigger factor; PFAM: Trigger factor, ribosome-binding, bacterial; Trigger factor, C-terminal, bacterial; SPTR: Trigger factor; TIGRFAM: Trigger factor.


ensembl_gene_id: Turpa_2745
symbol: AFM13384.1
gene_biotype: protein_coding
description:
  PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit; COGs: COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; InterPro IPR002023; KEGG: ote:Oter_1546 NADH dehydrogenase (ubiquinone) 24 kDa subunit; PFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; SPTR: NADH dehydrogenase (Ubiquinone) 24 kDa subunit.


ensembl_gene_id: Turpa_2746
symbol: AFM13385.1
gene_biotype: protein_coding
description:
  NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein; PFAM: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; Respiratory-chain NADH dehydrogenase 51 Kd subunit; SLBB domain; COGs: COG1894 NADH:ubiquinone oxidoreductase NADH-binding (51 kD) subunit; InterPro IPR011538:IPR019554:IPR019575; KEGG: ote:Oter_1545 NADH dehydrogenase (quinone); PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; SPTR: NADH dehydrogenase (Quinone).


ensembl_gene_id: Turpa_2747
symbol: AFM13386.1
gene_biotype: protein_coding
description:
  Hydrogenase, Fe-only; PFAM: Iron only hydrogenase large subunit, C-terminal domain; 2Fe-2S iron-sulfur cluster binding domain; NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; Iron hydrogenase small subunit; TIGRFAM: [FeFe] hydrogenase, group A; COGs: COG4624 Iron only hydrogenase large subunit C-terminal domain; InterPro IPR001041:IPR019574:IPR001450:IPR004108:IPR003149:IPR0133 52; KEGG: ote:Oter_1544 hydrogenase, Fe-only; PFAM: Iron hydrogenase, large subunit, C-terminal; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; Ferredoxin; 4Fe-4S ferredoxin, iron- [...]


ensembl_gene_id: Turpa_2751
symbol: AFM13390.1
gene_biotype: protein_coding
description:
  Lipocalin family protein; PFAM: Lipocalin-like domain; COGs: COG3040 Bacterial lipocalin; InterPro IPR013208; KEGG: ppd:Ppro_0126 lipocalin family protein; PFAM: Lipocalin-like; SPTR: Lipocalin family protein; Belongs to the calycin superfamily. Lipocalin family.


ensembl_gene_id: Turpa_2753
symbol: AFM13392.1
gene_biotype: protein_coding
description:
  Adenylate/guanylate cyclase with integral membrane sensor; PFAM: Adenylate and Guanylate cyclase catalytic domain; HAMP domain; COGs: COG2114 Adenylate cyclase family 3 (some protein contain HAMP domain); InterPro IPR003660:IPR001054; KEGG: lbf:LBF_4140 adenylate/guanylate cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; HAMP linker domain; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase; HAMP linker domain; SPTR: Adenylate/guanylate cyclase.


ensembl_gene_id: Turpa_2754
symbol: AFM13393.1
gene_biotype: protein_coding
description:
  Alpha/beta hydrolase fold containing protein; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: dal:Dalk_1565 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein.


ensembl_gene_id: Turpa_2757
symbol: trmH
gene_biotype: protein_coding
description:
  tRNA/rRNA methyltransferase (SpoU); Catalyzes the 2'-O methylation of guanosine at position 18 in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: Turpa_2758
symbol: AFM13397.1
gene_biotype: protein_coding
description:
  Protein serine/threonine phosphatase; PFAM: 7TM diverse intracellular signalling; Stage II sporulation protein E (SpoIIE); COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR010822:IPR001932; KEGG: lbf:LBF_1008 serine phosphatase RsbU; PFAM: Sporulation stage II, protein E C-terminal; SMART: Protein phosphatase 2C-related; SPTR: Putative phosphoserine phosphatase RsbP; putative membrane protein; putative signal peptide.


ensembl_gene_id: Turpa_2759
symbol: AFM13398.1
gene_biotype: protein_coding
description:
  Abortive infection protein; PFAM: CAAX amino terminal protease family; InterPro IPR003675; KEGG: xcv:XCV0005 putative membrane protease; PFAM: Abortive infection protein; SPTR: Putative membrane protease.


ensembl_gene_id: Turpa_2760
symbol: queF
gene_biotype: protein_coding
description:
  NADPH-dependent 7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily.


ensembl_gene_id: Turpa_2761
symbol: AFM13400.1
gene_biotype: protein_coding
description:
  PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain; COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090; KEGG: lbj:LBJ_1648 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA dehydrogenase, N-terminal; SPTR: Acyl-CoA dehydrogenase.


ensembl_gene_id: Turpa_2763
symbol: AFM13402.1
gene_biotype: protein_coding
description:
  PFAM: Acyltransferase; InterPro IPR002123; KEGG: lbf:LBF_2623 phosphate acyltransferase; SMART: Phospholipid/glycerol acyltransferase; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2765
symbol: AFM13404.1
gene_biotype: protein_coding
description:
  PFAM: Adenylate and Guanylate cyclase catalytic domain; COGs: COG2114 Adenylate cyclase family 3 (some protein contain HAMP domain); InterPro IPR001054; KEGG: lbf:LBF_0715 adenylate/guanylate cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase; SPTR: Putative adenylate or guanylate cyclase, family 3; putative membrane protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.


ensembl_gene_id: Turpa_2766
symbol: AFM13405.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: MAPEG family; KEGG: gdj:Gdia_0887 hypothetical protein; SPTR: Inner membrane protein.


ensembl_gene_id: Turpa_2767
symbol: AFM13406.1
gene_biotype: protein_coding
description:
  acetyl-CoA acetyltransferase; PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases; COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR002155; KEGG: lbl:LBL_2507 acetyl-CoA acetyltransferase; SPTR: Acetyl-CoA acetyltransferase; TIGRFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.


ensembl_gene_id: Turpa_2770
symbol: AFM13409.1
gene_biotype: protein_coding
description:
  PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; COGs: COG1109 Phosphomannomutase; InterPro IPR005844:IPR005845:IPR005843; KEGG: lic:LIC10446 phosphomannomutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, C-terminal; SPTR: Phosphomannomutase.


ensembl_gene_id: Turpa_2771
symbol: AFM13410.1
gene_biotype: protein_coding
description:
  PFAM: NUDIX domain; InterPro IPR000086; KEGG: emi:Emin_0213 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase.


ensembl_gene_id: Turpa_2772
symbol: gpsA
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; COGs: COG0240 Glycerol-3-phosphate dehydrogenase; HAMAP: Glycerol-3-phosphate dehydrogenase [NAD(P)+]; InterPro IPR011128:IPR006109; KEGG: gem:GM21_0007 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal; NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal; SPTR: Glycerol-3-phosphate dehydrogenase [NAD(P)+]; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: Turpa_2773
symbol: msrB
gene_biotype: protein_coding
description:
  PFAM: SelR domain; TIGRFAM: methionine-R-sulfoxide reductase; COGs: COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase; HAMAP: Peptide methionine sulfoxide reductase msrB; InterPro IPR002579; KEGG: sfu:Sfum_2571 methionine-R-sulfoxide reductase; PFAM: Methionine sulphoxide reductase B; SPTR: Methionine-R-sulfoxide reductase; TIGRFAM: Methionine sulphoxide reductase B.


ensembl_gene_id: Turpa_2774
symbol: AFM13413.1
gene_biotype: protein_coding
description:
  PFAM: Thioredoxin; Cytochrome C biogenesis protein transmembrane region; COGs: COG4232 Thiol:disulfide interchange protein; InterPro IPR003834:IPR013766; KEGG: sur:STAUR_5811 thiol:disulfide interchange protein DsbD; PFAM: Cytochrome c assembly protein, transmembrane region; Thioredoxin domain; SPTR: Thiol:disulfide interchange protein DsbD.


ensembl_gene_id: Turpa_2775
symbol: AFM13414.1
gene_biotype: protein_coding
description:
  PFAM: Adenylate and Guanylate cyclase catalytic domain; 7TM diverse intracellular signalling; COGs: COG2114 Adenylate cyclase family 3 (some protein contain HAMP domain); InterPro IPR011623:IPR001054; KEGG: lil:LB_118 adenylate cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; Diverse 7TM receptor, transmembrane region; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase; SPTR: Adenylate/guanylate cyclase.


ensembl_gene_id: Turpa_2776
symbol: AFM13415.1
gene_biotype: protein_coding
description:
  Carboxylesterase; COGs: COG0657 Esterase/lipase; KEGG: xop:PXO_00397 carboxylesterase; SPTR: Carboxylesterase.


ensembl_gene_id: Turpa_2777
symbol: AFM13416.1
gene_biotype: protein_coding
description:
  Catalytic domain-containing protein of components of various dehydrogenase complexes; PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form; COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterPro IPR000089:IPR004167:IPR001078; KEGG: lil:LA_2008 dihydrolipoamide acetyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; E3 binding; Biotin/lipoyl attachment; SPTR [...]


ensembl_gene_id: Turpa_2779
symbol: AFM13418.1
gene_biotype: protein_coding
description:
  Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase; COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: bra:BRADO3311 3-oxoacyl-[acyl-carrier-protein] reductase; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Turpa_2780
symbol: AFM13419.1
gene_biotype: protein_coding
description:
  PFAM: Competence protein; TIGRFAM: ComEC/Rec2-related protein; COGs: COG0658 membrane metal-binding protein; InterPro IPR004477; KEGG: lbj:LBJ_0679 competence protein; PFAM: ComEC/Rec2-related protein; SPTR: Competence protein; TIGRFAM: ComEC/Rec2-related protein.


ensembl_gene_id: Turpa_2781
symbol: ftsZ
gene_biotype: protein_coding
description:
  Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.


ensembl_gene_id: Turpa_2782
symbol: ftsA
gene_biotype: protein_coding
description:
  Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.


ensembl_gene_id: Turpa_2783
symbol: AFM13422.1
gene_biotype: protein_coding
description:
  PFAM: POTRA domain, FtsQ-type; InterPro IPR013685; PFAM: Polypeptide-transport-associated, FtsQ-type.


ensembl_gene_id: Turpa_2784
symbol: AFM13423.1
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function DUF20; COGs: COG0628 permease; InterPro IPR002549; KEGG: lic:LIC11592 putative permease protein; PFAM: Uncharacterised protein family UPF0118; SPTR: Permease.


ensembl_gene_id: Turpa_2786
symbol: tatA
gene_biotype: protein_coding
description:
  Sec-independent protein translocase protein tatA/E-like protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.


ensembl_gene_id: Turpa_2787
symbol: argB
gene_biotype: protein_coding
description:
  N-acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.


ensembl_gene_id: Turpa_2789
symbol: AFM13428.1
gene_biotype: protein_coding
description:
  PFAM: Sodium/hydrogen exchanger family; COGs: COG0475 Kef-type K+ transport systems membrane components; InterPro IPR006153; KEGG: bth:BT_3638 Na+/H+ anti-porter; PFAM: Cation/H+ exchanger; SPTR: Na+/H+ anti-porter.


ensembl_gene_id: Turpa_2790
symbol: glyQ
gene_biotype: protein_coding
description:
  PFAM: Glycyl-tRNA synthetase alpha subunit; TIGRFAM: glycyl-tRNA synthetase, tetrameric type, alpha subunit; COGs: COG0752 Glycyl-tRNA synthetase alpha subunit; HAMAP: Glycyl-tRNA synthetase, class IIc, alpha subunit; InterPro IPR002310; KEGG: dbr:Deba_1978 glycyl-tRNA synthetase, subunit alpha; PFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit; SPTR: Glycyl-tRNA synthetase alpha subunit; TIGRFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit.


ensembl_gene_id: Turpa_2796
symbol: AFM13435.1
gene_biotype: protein_coding
description:
  PFAM: Peptidase family M23; TIGRFAM: RHS repeat-associated core domain; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR006530:IPR016047; KEGG: lic:LIC10825 cytoplasmic membrane protein; PFAM: Peptidase M23; YD repeat; SPTR: Cytoplasmic membrane protein; TIGRFAM: RHS repeat-associated core domain-containing protein; YD repeat.


ensembl_gene_id: Turpa_2797
symbol: AFM13436.1
gene_biotype: protein_coding
description:
  Integrase family protein; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR004107:IPR002104; KEGG: eca:ECA3389 site-specific tyrosine recombinase XerC; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; SPTR: Tyrosine recombinase xerC 1; Belongs to the 'phage' integrase family.


ensembl_gene_id: Turpa_2798
symbol: AFM13437.1
gene_biotype: protein_coding
description:
  TOPRIM domain-containing protein; PFAM: Toprim domain; DNA primase catalytic core, N-terminal domain; CHC2 zinc finger; TIGRFAM: DNA primase, catalytic core; COGs: COG0358 DNA primase; InterPro IPR002694:IPR013264:IPR006171:IPR006154; KEGG: epy:EpC_31610 DnaG primase-like protein; PFAM: Toprim domain; Zinc finger, CHC2-type; DNA primase, catalytic core, N-terminal; SPTR: Zinc finger CHC2-family protein.


ensembl_gene_id: Turpa_2799
symbol: AFM13438.1
gene_biotype: protein_coding
description:
  Helix-turn-helix domain protein; InterPro IPR001387; KEGG: xbo:XBJ1_1302 putative DNA-binding protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Putative DNA-binding protein.


ensembl_gene_id: Turpa_2804
symbol: AFM13443.1
gene_biotype: protein_coding
description:
  PFAM: Salmonella virulence plasmid 65kDa B protein; TIGRFAM: RHS repeat-associated core domain; InterPro IPR006530; KEGG: lic:LIC10825 cytoplasmic membrane protein; PFAM: YD repeat; SPTR: Cytoplasmic membrane protein; TIGRFAM: RHS repeat-associated core domain-containing protein; YD repeat.


ensembl_gene_id: Turpa_2805
symbol: AFM13444.1
gene_biotype: protein_coding
description:
  Prolyl aminopeptidase; TIGRFAM: proline iminopeptidase, Neisseria-type subfamily; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073:IPR005944; KEGG: bba:Bd3480 proline iminopeptidase; PFAM: Alpha/beta hydrolase fold-1; SPTR: Proline iminopeptidase; TIGRFAM: Peptidase S33, proline iminopeptidase 1; Belongs to the peptidase S33 family.


ensembl_gene_id: Turpa_2806
symbol: AFM13445.1
gene_biotype: protein_coding
description:
  PFAM: Periplasmic binding protein; COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: lic:LIC13403 YvrC; PFAM: Periplasmic binding protein; SPTR: YvrC.


ensembl_gene_id: Turpa_2807
symbol: AFM13446.1
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate--protein phosphotransferase; PFAM: PEP-utilising enzyme, mobile domain; PEP-utilising enzyme, TIM barrel domain; PEP-utilising enzyme, N-terminal; COGs: COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component); InterPro IPR008731:IPR008279:IPR000121; KEGG: dmr:Deima_0541 phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilising enzyme; Phosphotransferase system, PEP-utilising enzyme, N-terminal; PEP-utilising enzyme, mobile region; SPTR: Putative uncharacterized protein; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: Turpa_2809
symbol: AFM13448.1
gene_biotype: protein_coding
description:
  Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.


ensembl_gene_id: Turpa_2811
symbol: AFM13450.1
gene_biotype: protein_coding
description:
  tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.


ensembl_gene_id: Turpa_2812
symbol: AFM13451.1
gene_biotype: protein_coding
description:
  PFAM: ABC transporter; COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439; KEGG: hoh:Hoch_3439 ABC transporter; PFAM: ABC transporter-like; SPTR: ABC transporter related protein.


ensembl_gene_id: Turpa_2813
symbol: AFM13452.1
gene_biotype: protein_coding
description:
  Mammalian cell entry related domain protein; PFAM: mce related protein; COGs: COG1463 ABC-type transport system involved in resistance to organic solvents periplasmic component; InterPro IPR003399; KEGG: geo:Geob_2685 mammalian cell entry related domain protein; PFAM: Mammalian cell entry related; SPTR: Mce family protein.


ensembl_gene_id: Turpa_2815
symbol: AFM13454.1
gene_biotype: protein_coding
description:
  PFAM: Fatty acid desaturase; InterPro IPR005804; KEGG: psb:Psyr_2554 fatty acid desaturase; PFAM: Fatty acid desaturase, type 1; SPTR: Fatty acid desaturase.


ensembl_gene_id: Turpa_2816
symbol: AFM13455.1
gene_biotype: protein_coding
description:
  PFAM: Glycosyl transferase family 2; InterPro IPR001173; KEGG: ctt:CtCNB1_0111 glycosyl transferase, family 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase family protein.


ensembl_gene_id: Turpa_2818
symbol: nth
gene_biotype: protein_coding
description:
  Endonuclease III, DNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.


ensembl_gene_id: Turpa_2819
symbol: AFM13458.1
gene_biotype: protein_coding
description:
  PFAM: Adenylate and Guanylate cyclase catalytic domain; 7TM diverse intracellular signalling; 7TMR-DISM extracellular 2; COGs: COG2114 Adenylate cyclase family 3 (some protein contain HAMP domain); InterPro IPR011623:IPR001054; KEGG: lil:LA_3843 adenylate/guanylate cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; Diverse 7TM receptor, transmembrane region; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase; SPTR: Adenylate/guanylate cyclase.


ensembl_gene_id: Turpa_2820
symbol: sigA
gene_biotype: protein_coding
description:
  RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.


ensembl_gene_id: Turpa_2821
symbol: AFM13460.1
gene_biotype: protein_coding
description:
  2-octaprenylphenol hydroxylase; PFAM: ABC1 family; COGs: COG0661 unusual protein kinase; InterPro IPR004147; KEGG: srm:SRM_02901 ubiquinone biosynthesis protein UbiB; PFAM: ABC-1; SPTR: Ubiquinone biosynthesis protein ubiB.


ensembl_gene_id: Turpa_2822
symbol: AFM13461.1
gene_biotype: protein_coding
description:
  PFAM: Pirin C-terminal cupin domain; Pirin; COGs: COG1741 Pirin-related protein; InterPro IPR003829:IPR008778; KEGG: mxa:MXAN_2232 pirin family protein; PFAM: Pirin, C-terminal; Pirin, N-terminal; SPTR: Putative uncharacterized protein; Belongs to the pirin family.


ensembl_gene_id: Turpa_2823
symbol: AFM13462.1
gene_biotype: protein_coding
description:
  PFAM: Uncharacterized protein conserved in bacteria (DUF2236); KEGG: npu:Npun_R4287 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2824
symbol: pckG
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate carboxykinase (GTP); Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle; Belongs to the phosphoenolpyruvate carboxykinase [GTP] family.


ensembl_gene_id: Turpa_2825
symbol: AFM13464.1
gene_biotype: protein_coding
description:
  Gamma-glutamyltransferase 1; PFAM: Gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltranspeptidase; COGs: COG0405 Gamma-glutamyltransferase; InterPro IPR000101; KEGG: aeh:Mlg_2514 gamma-glutamyltransferase 1; PFAM: Gamma-glutamyltranspeptidase; SPTR: Gamma-glutamyltransferase 1.


ensembl_gene_id: Turpa_2826
symbol: AFM13465.1
gene_biotype: protein_coding
description:
  PFAM: Sodium:solute symporter family; COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: gvi:glr3452 hypothetical protein; PFAM: Sodium/solute symporter; SPTR: Glr3452 protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: Turpa_2827
symbol: AFM13466.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF179; PFAM: Uncharacterized ACR, COG1678; COGs: COG1678 Putative transcriptional regulator protein; InterPro IPR003774; KEGG: lbl:LBL_2641 transcriptional regulator; PFAM: Protein of unknown function DUF179; SPTR: Transcriptional regulator; Belongs to the UPF0301 (AlgH) family.


ensembl_gene_id: Turpa_2829
symbol: AFM13468.1
gene_biotype: protein_coding
description:
  PFAM: Peptidase family S49; TIGRFAM: signal peptide peptidase SppA, 36K type; COGs: COG0616 Periplasmic serine protease (ClpP class); InterPro IPR002142; KEGG: pbs:Plabr_0403 signal peptide peptidase SppA, 36K type; PFAM: Peptidase S49; SPTR: Signal peptide peptidase SppA, 36K type.


ensembl_gene_id: Turpa_2830
symbol: AFM13469.1
gene_biotype: protein_coding
description:
  PFAM: Peptidase family M23; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: lbl:LBL_0095 metallopeptidase; PFAM: Peptidase M23; SPTR: Metallopeptidase.


ensembl_gene_id: Turpa_2831
symbol: AFM13470.1
gene_biotype: protein_coding
description:
  PFAM: Endonuclease related to archaeal Holliday junction resolvase; COGs: COG4741 secreted endonuclease distantly related to Holliday junction resolvase; InterPro IPR019287; KEGG: tde:TDE2613 hypothetical protein; PFAM: Holliday junction resolvase-like; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2832
symbol: AFM13471.1
gene_biotype: protein_coding
description:
  PFAM: Zinc carboxypeptidase; InterPro IPR000834; KEGG: bba:Bd1776 putative carboxypeptidase; PFAM: Peptidase M14, carboxypeptidase A; SMART: Peptidase M14, carboxypeptidase A; SPTR: Putative carboxypeptidase.


ensembl_gene_id: Turpa_2833
symbol: folD
gene_biotype: protein_coding
description:
  5,10-methylenetetrahydrofolate dehydrogenase (NADP+), methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.


ensembl_gene_id: Turpa_2834
symbol: AFM13473.1
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: lic:LIC11247 cGMP-specific phosphodiesterase; SPTR: cGMP-specific phosphodiesterase.


ensembl_gene_id: Turpa_2836
symbol: AFM13475.1
gene_biotype: protein_coding
description:
  Listeria/Bacterioides repeat-containing protein; PFAM: Beta-propeller repeat; Listeria-Bacteroides repeat domain (List_Bact_rpt); InterPro IPR013378; KEGG: lic:LIC10868 hypothetical protein; PFAM: Listeria/Bacterioides repeat; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2839
symbol: AFM13478.1
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: dol:Dole_1944 aromatic hydrocarbon degradation membrane protein; SPTR: Membrane protein involved in aromatic hydrocarbon degradation.


ensembl_gene_id: Turpa_2843
symbol: pyrG
gene_biotype: protein_coding
description:
  CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.


ensembl_gene_id: Turpa_2844
symbol: AFM13483.1
gene_biotype: protein_coding
description:
  Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1; COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683:IPR003736; KEGG: lbf:LBF_5005 hypothetical protein; PFAM: Thioesterase superfamily; SPTR: Putative uncharacterized protein; TIGRFAM: Phenylacetic acid degradation-related protein.


ensembl_gene_id: Turpa_2845
symbol: murD
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.


ensembl_gene_id: Turpa_2847
symbol: argG
gene_biotype: protein_coding
description:
  PFAM: Arginosuccinate synthase; TIGRFAM: argininosuccinate synthase; COGs: COG0137 Argininosuccinate synthase; HAMAP: Argininosuccinate synthase; InterPro IPR001518; KEGG: lbf:LBF_0087 argininosuccinate synthase; PFAM: Argininosuccinate synthase; SPTR: Argininosuccinate synthase; TIGRFAM: Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.


ensembl_gene_id: Turpa_2848
symbol: AFM13487.1
gene_biotype: protein_coding
description:
  InterPro IPR001258; KEGG: sus:Acid_5863 NHL repeat-containing protein; PFAM: NHL repeat; SPTR: NHL repeat containing protein.


ensembl_gene_id: Turpa_2850
symbol: nuoH
gene_biotype: protein_coding
description:
  NADH dehydrogenase subunit H; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.


ensembl_gene_id: Turpa_2851
symbol: AFM13490.1
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: lbf:LBF_0003 DNA polymerase III subunit gamma and tau; SPTR: DNA polymerase III subunit gamma/tau.


ensembl_gene_id: Turpa_2852
symbol: ilvE
gene_biotype: protein_coding
description:
  Branched chain amino acid aminotransferase apoenzyme; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: Turpa_2853
symbol: AFM13492.1
gene_biotype: protein_coding
description:
  Thioredoxin reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: thioredoxin-disulfide reductase; COGs: COG0492 Thioredoxin reductase; InterPro IPR013027:IPR005982; KEGG: ank:AnaeK_4061 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: Thioredoxin reductase; TIGRFAM: Thioredoxin reductase.


ensembl_gene_id: Turpa_2861
symbol: AFM13500.1
gene_biotype: protein_coding
description:
  Phospholipase D/Transphosphatidylase; COGs: COG1502 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase; InterPro IPR001736; KEGG: cellulosome anchoring protein cohesin subunit; PFAM: Phospholipase D/Transphosphatidylase; SMART: Phospholipase D/Transphosphatidylase; SPTR: Phospholipase D/transphosphatidylase.


ensembl_gene_id: Turpa_2862
symbol: AFM13501.1
gene_biotype: protein_coding
description:
  Ferredoxin-dependent glutamate synthase; PFAM: ATP-grasp domain; FMN-dependent dehydrogenase; COGs: COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenase; InterPro IPR020561:IPR002932; KEGG: lbf:LBF_1288 dehydrogenase; PFAM: Glutamate synthase, central-C; Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; SPTR: Putative oxidase or carboxylase.


ensembl_gene_id: Turpa_2863
symbol: AFM13502.1
gene_biotype: protein_coding
description:
  PFAM: Biotin/lipoate A/B protein ligase family; COGs: COG0095 Lipoate-protein ligase A; InterPro IPR004143; KEGG: lic:LIC12334 lipoate-protein ligase A; PFAM: Biotin/lipoate A/B protein ligase; SPTR: Lipoate protein ligase A.


ensembl_gene_id: Turpa_2864
symbol: AFM13503.1
gene_biotype: protein_coding
description:
  PFAM: Ion transport protein; InterPro IPR005821; KEGG: mac:MA2034 potassium channel protein; PFAM: Ion transport; SPTR: Potassium channel protein.


ensembl_gene_id: Turpa_2865
symbol: AFM13504.1
gene_biotype: protein_coding
description:
  Hypothetical protein; COGs: COG3387 Glucoamylase and related glycosyl hydrolase; KEGG: nhl:Nhal_2547 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2866
symbol: AFM13505.1
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase class II; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.


ensembl_gene_id: Turpa_2867
symbol: ppnP
gene_biotype: protein_coding
description:
  UPF0345 protein yaiE; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.


ensembl_gene_id: Turpa_2871
symbol: AFM13510.1
gene_biotype: protein_coding
description:
  PFAM: Iron-containing alcohol dehydrogenase; COGs: COG1454 Alcohol dehydrogenase class IV; InterPro IPR001670; KEGG: lic:LIC11070 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type; SPTR: Alcohol dehydrogenase.


ensembl_gene_id: Turpa_2872
symbol: AFM13511.1
gene_biotype: protein_coding
description:
  PFAM: Anti-sigma-28 factor, FlgM; TIGRFAM: flagellar biosynthesis anti-sigma factor FlgM; InterPro IPR007412; PFAM: Anti-sigma-28 factor, FlgM; TIGRFAM: flagellar biosynthesis anti-sigma factor protein FlgM.


ensembl_gene_id: Turpa_2874
symbol: AFM13513.1
gene_biotype: protein_coding
description:
  PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; Beta-Casp domain; COGs: COG1236 exonuclease of the beta-lactamase fold involved in RNA processing; InterPro IPR011108; KEGG: maq:Maqu_2652 beta-lactamase domain-containing protein; PFAM: RNA-metabolising metallo-beta-lactamase; SPTR: Predicted exonuclease of the beta-lactamase fold involved in RNA processing.


ensembl_gene_id: Turpa_2875
symbol: AFM13514.1
gene_biotype: protein_coding
description:
  Helicase c2; PFAM: DEAD_2; DEAD/DEAH box helicase; COGs: COG1199 Rad3-related DNA helicase; InterPro IPR014001:IPR006555; KEGG: ssm:Spirs_1712 helicase C2; SMART: Helicase, ATP-dependent, c2 type; DEAD-like helicase, N-terminal; SPTR: Helicase c2.


ensembl_gene_id: Turpa_2876
symbol: AFM13515.1
gene_biotype: protein_coding
description:
  PFAM: RNase H; COGs: COG0328 Ribonuclease HI; InterPro IPR002156; KEGG: lbl:LBL_1762 ribonuclease HI; PFAM: Ribonuclease H; SPTR: Ribonuclease HI.


ensembl_gene_id: Turpa_2877
symbol: AFM13516.1
gene_biotype: protein_coding
description:
  PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; InterPro IPR003439:IPR013563:IPR010066:IPR003593; KEGG: chl:Chy400_1766 oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein; TIGRFAM: Oligopept [...]


ensembl_gene_id: Turpa_2878
symbol: secE
gene_biotype: protein_coding
description:
  Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.


ensembl_gene_id: Turpa_2879
symbol: nusG
gene_biotype: protein_coding
description:
  Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination.


ensembl_gene_id: Turpa_2880
symbol: rplK
gene_biotype: protein_coding
description:
  LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.


ensembl_gene_id: Turpa_2881
symbol: rplA
gene_biotype: protein_coding
description:
  LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.


ensembl_gene_id: Turpa_2882
symbol: rplJ
gene_biotype: protein_coding
description:
  LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.


ensembl_gene_id: Turpa_2883
symbol: rplL
gene_biotype: protein_coding
description:
  LSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.


ensembl_gene_id: Turpa_2884
symbol: rpoB
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: Turpa_2886
symbol: rpsL
gene_biotype: protein_coding
description:
  SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.


ensembl_gene_id: Turpa_2887
symbol: rpsG
gene_biotype: protein_coding
description:
  Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.


ensembl_gene_id: Turpa_2888
symbol: fusA
gene_biotype: protein_coding
description:
  Translation elongation factor 2 (EF-2/EF-G); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. [...]


ensembl_gene_id: Turpa_2889
symbol: AFM13528.1
gene_biotype: protein_coding
description:
  Aminopeptidase; PFAM: Predicted aminopeptidase (DUF2265); COGs: COG4324 aminopeptidase; InterPro IPR014553; KEGG: lbf:LBF_0877 aminopeptidase; PFAM: aminopeptidase; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2890
symbol: lepA
gene_biotype: protein_coding
description:
  GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.


ensembl_gene_id: Turpa_2891
symbol: AFM13530.1
gene_biotype: protein_coding
description:
  PFAM: Multi-copper polyphenol oxidoreductase laccase; TIGRFAM: uncharacterized protein, YfiH family; COGs: COG1496 conserved hypothetical protein; InterPro IPR003730; KEGG: bpr:GBP346_A2275 hypothetical protein; PFAM: Multi-copper polyphenol oxidoreductase, laccase; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2894
symbol: nadA
gene_biotype: protein_coding
description:
  Quinolinate synthetase; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.


ensembl_gene_id: Turpa_2896
symbol: AFM13535.1
gene_biotype: protein_coding
description:
  Tetratricopeptide TPR_2 repeat-containing protein; PFAM: Tetratricopeptide repeat; InterPro IPR001440:IPR013105:IPR019734; KEGG: lbf:LBF_2084 hypothetical protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: Putative TPR-repeat-containing protein.


ensembl_gene_id: Turpa_2897
symbol: AFM13536.1
gene_biotype: protein_coding
description:
  Integral membrane sensor hybrid histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661:IPR003594:IPR001789; KEGG: pzu:PHZ_c3240 sensor histidine kinase/response regulator; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; SMART: ATP-binding region, ATPase-like; Signal transduction histi [...]


ensembl_gene_id: Turpa_2899
symbol: AFM13538.1
gene_biotype: protein_coding
description:
  Phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, N domain; Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, C domain; TIGRFAM: phosphoribosylamine--glycine ligase; COGs: COG0151 Phosphoribosylamine-glycine ligase; InterPro IPR020562:IPR020561:IPR020560:IPR000115; KEGG: lbl:LBL_2549 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; SPTR: Phosphoribosylamine--gl [...]


ensembl_gene_id: Turpa_2901
symbol: AFM13540.1
gene_biotype: protein_coding
description:
  PFAM: Adenylate and Guanylate cyclase catalytic domain; COGs: COG2114 Adenylate cyclase family 3 (some protein contain HAMP domain); InterPro IPR001054; KEGG: lic:LIC11343 adenylate/guanylate cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase; SPTR: Adenylate/guanylate cyclase.


ensembl_gene_id: Turpa_2902
symbol: AFM13541.1
gene_biotype: protein_coding
description:
  Lipoprotein; PFAM: Esterase PHB depolymerase; COGs: COG3509 Poly(3-hydroxybutyrate) depolymerase; KEGG: fri:FraEuI1c_4661 lipoprotein; SPTR: Lipoprotein.


ensembl_gene_id: Turpa_2903
symbol: AFM13542.1
gene_biotype: protein_coding
description:
  PFAM: MerC mercury resistance protein; KEGG: bba:Bd1800 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2904
symbol: AFM13543.1
gene_biotype: protein_coding
description:
  PFAM: Ferric uptake regulator family; COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: msv:Mesil_2000 ferric uptake regulator, Fur family; PFAM: Ferric-uptake regulator; SPTR: Ferric uptake regulator, Fur family; Belongs to the Fur family.


ensembl_gene_id: Turpa_2905
symbol: AFM13544.1
gene_biotype: protein_coding
description:
  Uncharacterized protein family UPF0079, ATPase; PFAM: Uncharacterised P-loop hydrolase UPF0079; TIGRFAM: ATPase, YjeE family; COGs: COG0802 ATPase or kinase; InterPro IPR003442; KEGG: ele:Elen_2855 protein of unknown function UPF0079; PFAM: Uncharacterised protein family UPF0079, ATPase bacteria; SPTR: Putative uncharacterized protein; TIGRFAM: Uncharacterised protein family UPF0079, ATPase bacteria.


ensembl_gene_id: Turpa_2907
symbol: AFM13546.1
gene_biotype: protein_coding
description:
  PFAM: RNB domain; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonucleases; COGs: COG0557 Exoribonuclease R; InterPro IPR001900:IPR004476; KEGG: lic:LIC10035 ribonuclease R; PFAM: Ribonuclease II/R; SPTR: Ribonuclease R; TIGRFAM: Ribonuclease II/ribonuclease R, bacteria.


ensembl_gene_id: Turpa_2908
symbol: AFM13547.1
gene_biotype: protein_coding
description:
  Anti-sigma-factor antagonist; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor; COGs: COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); InterPro IPR002645; KEGG: saq:Sare_4413 anti-sigma-factor antagonist; PFAM: Sulphate transporter/antisigma-factor antagonist STAS; SPTR: Anti-sigma factor antagonist.


ensembl_gene_id: Turpa_2910
symbol: AFM13549.1
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: tde:TDE2320 RNA polymerase sigma-24 factor, putative; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase sigma-H factor family protein; TIGRFAM: RNA polymerase sigma-70; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: Turpa_2912
symbol: AFM13551.1
gene_biotype: protein_coding
description:
  1,4-dihydroxy-6-naphthoate synthase; PFAM: Putative periplasminc binding protein (DUF178); COGs: COG2107 periplasmic solute-binding protein; InterPro IPR003794; KEGG: din:Selin_1733 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2914
symbol: AFM13553.1
gene_biotype: protein_coding
description:
  Ribulose-5-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase; COGs: COG0036 Pentose-5-phosphate-3-epimerase; InterPro IPR000056; KEGG: lbf:LBF_1609 pentose-5-phosphate-3-epimerase; PFAM: Ribulose-phosphate 3-epimerase; SPTR: Ribulose-5-phosphate 3-epimerase; TIGRFAM: Ribulose-phosphate 3-epimerase.


ensembl_gene_id: Turpa_2915
symbol: AFM13554.1
gene_biotype: protein_coding
description:
  PASTA domain containing protein; InterPro IPR005543; KEGG: lbl:LBL_1662 hypothetical protein; SMART: PASTA; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2916
symbol: AFM13555.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Creatinine amidohydrolase; KEGG: tmz:Tmz1t_2461 creatininase; SPTR: Creatinine amidohydrolase.


ensembl_gene_id: Turpa_2917
symbol: AFM13556.1
gene_biotype: protein_coding
description:
  PFAM: Hpt domain; InterPro IPR008207; KEGG: bac:BamMC406_1616 multi-sensor hybrid histidine kinase; PFAM: Signal transduction histidine kinase, phosphotransfer (Hpt) region; SPTR: Multi-sensor hybrid histidine kinase.


ensembl_gene_id: Turpa_2918
symbol: AFM13557.1
gene_biotype: protein_coding
description:
  Penicillin-binding protein, 1A family; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; TIGRFAM: penicillin-binding protein, 1A family; COGs: COG5009 Membrane carboxypeptidase/penicillin-binding protein; InterPro IPR001264:IPR001460:IPR011816; KEGG: lic:LIC12620 membrane carboxypeptidase; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; SPTR: Membrane carboxypeptidase/penicillin-binding protein; TIGRFAM: Penicillin-binding protein 1A.


ensembl_gene_id: Turpa_2919
symbol: dnaX
gene_biotype: protein_coding
description:
  DNA polymerase III, tau subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.


ensembl_gene_id: Turpa_2920
symbol: AFM13559.1
gene_biotype: protein_coding
description:
  Ankyrin; COGs: COG0666 FOG: Ankyrin repeat; InterPro IPR002110; KEGG: spu:765451 similar to ankyrin 2,3/unc44; PFAM: Ankyrin repeat; SPTR: NACHT and Ankyrin domain protein.


ensembl_gene_id: Turpa_2922
symbol: AFM13561.1
gene_biotype: protein_coding
description:
  tRNA s(2)C-32 sulfurtransferase; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system. Belongs to the TtcA family.


ensembl_gene_id: Turpa_2923
symbol: AFM13562.1
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide pyrophosphorylase (carboxylating); PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; FCD domain; Quinolinate phosphoribosyl transferase, N-terminal domain; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; COGs: COG0157 Nicotinate-nucleotide pyrophosphorylase; InterPro IPR002638:IPR004393; KEGG: drm:Dred_0165 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; SPTR: Nicotinate-nucleotide pyrophosphorylase (Carboxylating); TIGRFAM: Nicotinate-nucleotide pyrophosphorylase.


ensembl_gene_id: Turpa_2924
symbol: AFM13563.1
gene_biotype: protein_coding
description:
  Hypothetical protein; COGs: COG1452 Organic solvent tolerance protein OstA; KEGG: lbl:LBL_1882 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2925
symbol: AFM13564.1
gene_biotype: protein_coding
description:
  Ribosomal large subunit pseudouridine synthase D; PFAM: RNA pseudouridylate synthase; COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006145; KEGG: din:Selin_2320 pseudouridine synthase; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; SPTR: Putative uncharacterized protein; manually curated.


ensembl_gene_id: Turpa_2926
symbol: rsmG
gene_biotype: protein_coding
description:
  Ribosomal RNA small subunit methyltransferase G; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.


ensembl_gene_id: Turpa_2927
symbol: AFM13566.1
gene_biotype: protein_coding
description:
  Methyltransferase type 12; PFAM: Methyltransferase domain; COGs: COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1 4-benzoquinol methylase; InterPro IPR013217; KEGG: lbf:LBF_1213 methyltransferase/methylase; PFAM: Methyltransferase type 12; SPTR: Putative 3-demethylubiquinone-9 3-O-methyltransferase.


ensembl_gene_id: Turpa_2928
symbol: AFM13567.1
gene_biotype: protein_coding
description:
  PFAM: Aldehyde dehydrogenase family; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: lbl:LBL_2614 NAD-dependent aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; SPTR: Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.


ensembl_gene_id: Turpa_2929
symbol: AFM13568.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: pla:Plav_0665 helix-turn-helix domain-containing protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family.


ensembl_gene_id: Turpa_2930
symbol: AFM13569.1
gene_biotype: protein_coding
description:
  Tetratricopeptide TPR_2 repeat-containing protein; PFAM: Tetratricopeptide repeat; InterPro IPR001440:IPR013105:IPR019734; KEGG: bpo:BP951000_2271 TPR domain-containing protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SPTR: TPR domain protein.


ensembl_gene_id: Turpa_2931
symbol: surE
gene_biotype: protein_coding
description:
  5'-nucleotidase, exopolyphosphatase, 3'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.


ensembl_gene_id: Turpa_2932
symbol: AFM13571.1
gene_biotype: protein_coding
description:
  PFAM: Tetratricopeptide repeat; COGs: COG1729 conserved hypothetical protein; InterPro IPR001440:IPR013105:IPR011717:IPR019734; KEGG: sru:SRU_1584 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR2; Tetratricopeptide TPR-4; SPTR: Tetratricopeptide repeat family.


ensembl_gene_id: Turpa_2933
symbol: AFM13572.1
gene_biotype: protein_coding
description:
  Heat shock protein HslVU, ATPase subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity.


ensembl_gene_id: Turpa_2934
symbol: AFM13573.1
gene_biotype: protein_coding
description:
  PFAM: Enoyl-CoA hydratase/isomerase family; COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: lbf:LBF_0052 enoyl-CoA hydratase; PFAM: Crotonase, core; SPTR: Putative enoyl-CoA hydratase.


ensembl_gene_id: Turpa_2935
symbol: AFM13574.1
gene_biotype: protein_coding
description:
  Protein of unknown function methylase putative; PFAM: Conserved hypothetical protein 95; COGs: COG0742 N6-adenine-specific methylase; InterPro IPR016065; KEGG: lgs:LEGAS_1315 methyltransferase; PFAM: Protein of unknown function methylase putative; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2936
symbol: AFM13575.1
gene_biotype: protein_coding
description:
  Sigma54 specific transcriptional regulator, Fis family; PFAM: Bacterial regulatory protein, Fis family; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR002197; KEGG: dak:DaAHT2_1382 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: Helix-turn-helix, Fis-type; SPTR: Two component, sigma54 specific, transcriptional regulator, Fis family.


ensembl_gene_id: Turpa_2937
symbol: aroK
gene_biotype: protein_coding
description:
  Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.


ensembl_gene_id: Turpa_2938
symbol: aroE
gene_biotype: protein_coding
description:
  Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).


ensembl_gene_id: Turpa_2940
symbol: AFM13579.1
gene_biotype: protein_coding
description:
  PFAM: DSBA-like thioredoxin domain; Vitamin K epoxide reductase family; COGs: COG1651 Protein-disulfide isomerase; InterPro IPR012932:IPR001853; KEGG: lbl:LBL_0031 protein-disulfide isomerase; PFAM: Vitamin K epoxide reductase; DSBA oxidoreductase; SMART: Vitamin K epoxide reductase; SPTR: Protein-disulfide isomerase.


ensembl_gene_id: Turpa_2943
symbol: AFM13582.1
gene_biotype: protein_coding
description:
  PFAM: UvrD/REP helicase; COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: afl:Aflv_0246 ATP-dependent DNA helicase PcrA; PFAM: DNA helicase, UvrD/REP type; SPTR: ATP-dependent DNA helicase PcrA.


ensembl_gene_id: Turpa_2944
symbol: AFM13583.1
gene_biotype: protein_coding
description:
  Carbonic anhydrase; PFAM: Sulfate transporter family; Carbonic anhydrase; COGs: COG0659 Sulfate permease and related transporter (MFS superfamily); InterPro IPR011547:IPR001765; KEGG: lbl:LBL_2497 bifunctional permease/carbonic anhydrase; PFAM: Carbonic anhydrase; Sulphate transporter; SPTR: Bifunctional permease/carbonic anhydrase.


ensembl_gene_id: Turpa_2947
symbol: gatB
gene_biotype: protein_coding
description:
  aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.


ensembl_gene_id: Turpa_2949
symbol: AFM13588.1
gene_biotype: protein_coding
description:
  Hypothetical protein; COGs: COG1647 Esterase/lipase; KEGG: drt:Dret_1708 putative carboxylesterase; SPTR: Putative carboxylesterase.


ensembl_gene_id: Turpa_2950
symbol: AFM13589.1
gene_biotype: protein_coding
description:
  Ribosomal RNA methyltransferase RrmJ/FtsJ; PFAM: FtsJ-like methyltransferase; InterPro IPR002877; KEGG: dde:Dde_0307 hypothetical protein; PFAM: Ribosomal RNA methyltransferase RrmJ/FtsJ; SPTR: Putative RNA 2'-O-ribose methyltransferase MtfA.


ensembl_gene_id: Turpa_2954
symbol: AFM13593.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function, DUF547; InterPro IPR006869; KEGG: hch:HCH_01043 hypothetical protein; PFAM: Protein of unknown function DUF547; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2955
symbol: AFM13594.1
gene_biotype: protein_coding
description:
  PFAM: Pyridine nucleotide-disulphide oxidoreductase; COGs: COG1251 NAD(P)H-nitrite reductase; InterPro IPR013027; KEGG: Ferredoxin--NAD(+) reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: Pyridine nucleotide-disulphide oxidoreductase domain protein.


ensembl_gene_id: Turpa_2956
symbol: AFM13595.1
gene_biotype: protein_coding
description:
  PFAM: Radical SAM superfamily; Protein of unknown function (DUF3641); TIGRFAM: radical SAM/Cys-rich domain protein; COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197; KEGG: lbf:LBF_0330 Fe-S oxidoreductase; PFAM: Radical SAM; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2958
symbol: AFM13597.1
gene_biotype: protein_coding
description:
  Glycine dehydrogenase (decarboxylating) alpha subunit; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein.


ensembl_gene_id: Turpa_2959
symbol: gcvH
gene_biotype: protein_coding
description:
  Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.


ensembl_gene_id: Turpa_2962
symbol: AFM13601.1
gene_biotype: protein_coding
description:
  PFAM: Glutathione S-transferase, N-terminal domain; COGs: COG0625 Glutathione S-transferase; InterPro IPR004045; KEGG: lbl:LBL_1855 glutathione transferase; PFAM: Glutathione S-transferase, N-terminal; SPTR: Glutathione transferase.


ensembl_gene_id: Turpa_2963
symbol: AFM13602.1
gene_biotype: protein_coding
description:
  Alpha/beta hydrolase fold containing protein; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: lbf:LBF_4017 hydrolase or acetyltransferase; PFAM: Alpha/beta hydrolase fold-1; SPTR: Putative hydrolase.


ensembl_gene_id: Turpa_2964
symbol: panC
gene_biotype: protein_coding
description:
  Pantothenate synthetase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.


ensembl_gene_id: Turpa_2965
symbol: AFM13604.1
gene_biotype: protein_coding
description:
  Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase; COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: dal:Dalk_2039 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: Turpa_2967
symbol: AFM13606.1
gene_biotype: protein_coding
description:
  Peptidase M30, hyicolysin; PFAM: Peptidase M30; InterPro IPR019501; KEGG: lbf:LBF_4114 putative lipoprotein; PFAM: Peptidase M30, hyicolysin; SPTR: Conserved hypothetical lipoprotein.


ensembl_gene_id: Turpa_2968
symbol: AFM13607.1
gene_biotype: protein_coding
description:
  Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Carbon-nitrogen hydrolase; COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: ter:Tery_1632 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.


ensembl_gene_id: Turpa_2970
symbol: AFM13609.1
gene_biotype: protein_coding
description:
  Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.


ensembl_gene_id: Turpa_2971
symbol: rpsR
gene_biotype: protein_coding
description:
  30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.


ensembl_gene_id: Turpa_2974
symbol: priA
gene_biotype: protein_coding
description:
  Replication restart DNA helicase PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.


ensembl_gene_id: Turpa_2975
symbol: AFM13614.1
gene_biotype: protein_coding
description:
  SSU ribosomal protein S12P methylthiotransferase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.


ensembl_gene_id: Turpa_2976
symbol: AFM13615.1
gene_biotype: protein_coding
description:
  COGs: COG1426 conserved hypothetical protein; KEGG: lbl:LBL_2154 transcriptional regulator; SPTR: Transcriptional regulator.


ensembl_gene_id: Turpa_2977
symbol: AFM13616.1
gene_biotype: protein_coding
description:
  PFAM: Outer membrane lipoprotein carrier protein LolA; COGs: COG2834 Outer membrane lipoprotein-sorting protein; InterPro IPR004564; KEGG: lic:LIC12545 outer membrane lipoprotein carrier protein; PFAM: Outer membrane lipoprotein carrier protein LolA; SPTR: Outer membrane lipoprotein-sorting protein.


ensembl_gene_id: Turpa_2978
symbol: AFM13617.1
gene_biotype: protein_coding
description:
  C-terminal processing peptidase-3; PFAM: Peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc); COGs: COG0793 Periplasmic protease; InterPro IPR001478:IPR005151:IPR004447; KEGG: lbl:LBL_1069 C-terminal processing periplasmic-protease-3; PFAM: Peptidase S41; PDZ/DHR/GLGF; SMART: Peptidase S41; PDZ/DHR/GLGF; SPTR: C-terminal processing periplasmic-protease-3; TIGRFAM: Peptidase S41A, C-terminal protease; Belongs to the peptidase S41A family.


ensembl_gene_id: Turpa_2979
symbol: AFM13618.1
gene_biotype: protein_coding
description:
  Anti-sigma-factor antagonist; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor; COGs: COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); InterPro IPR002645:IPR003658; KEGG: lbf:LBF_2261 anti-sigma factor antagonist; PFAM: Sulphate transporter/antisigma-factor antagonist STAS; SPTR: Anti-sigma factor antagonist; TIGRFAM: Anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family.


ensembl_gene_id: Turpa_2980
symbol: AFM13619.1
gene_biotype: protein_coding
description:
  InterPro IPR018392; KEGG: lbf:LBF_2260 LipL71 lipoprotein; PFAM: Peptidoglycan-binding lysin domain; SPTR: Putative ATPase.


ensembl_gene_id: Turpa_2981
symbol: rho
gene_biotype: protein_coding
description:
  Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.


ensembl_gene_id: Turpa_2984
symbol: AFM13623.1
gene_biotype: protein_coding
description:
  ATPase AAA-2 domain protein; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent chaperone ClpB; COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterPro IPR004176:IPR003959:IPR013093:IPR019489:IPR003593; KEGG: lic:LIC12017 ATP-dependent protease; PFAM: ATPase associated with various cellular activities, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: Chaperone pro [...]


ensembl_gene_id: Turpa_2985
symbol: AFM13624.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial capsule synthesis protein PGA_cap; COGs: COG2843 Putative protein of poly-gamma-glutamate biosynthesis (capsule formation); InterPro IPR019079; KEGG: lbl:LBL_0858 poly-gamma-glutamate biosynthesis protein; PFAM: Capsule synthesis protein, CapA; SPTR: Poly-gamma-glutamate biosynthesis protein.


ensembl_gene_id: Turpa_2987
symbol: AFM13626.1
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: sur:STAUR_4559 surface antigen variable number repeat protein; SPTR: Surface antigen variable number repeat domain protein.


ensembl_gene_id: Turpa_2988
symbol: AFM13627.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Glycosyl transferases group 1; KEGG: nis:NIS_1404 glycosyl transferase; SPTR: Putative glycosyltransferase.


ensembl_gene_id: Turpa_2989
symbol: AFM13628.1
gene_biotype: protein_coding
description:
  PFAM: Citrate synthase; COGs: COG0372 Citrate synthase; InterPro IPR002020; KEGG: lsp:Bsph_2971 citrate synthase 3; PFAM: Citrate synthase-like; SPTR: Type II citrate synthase; Belongs to the citrate synthase family.


ensembl_gene_id: Turpa_2990
symbol: AFM13629.1
gene_biotype: protein_coding
description:
  PFAM: Sodium Bile acid symporter family; TIGRFAM: bile acid transporter; COGs: COG0385 Na+-dependent transporter; InterPro IPR002657; KEGG: ote:Oter_4097 bile acid:sodium symporter; PFAM: Bile acid:sodium symporter; SPTR: Bile acid:sodium symporter; manually curated.


ensembl_gene_id: Turpa_2991
symbol: AFM13630.1
gene_biotype: protein_coding
description:
  UPF0176 protein yceA; PFAM: Rhodanese-like domain; COGs: COG1054 sulfurtransferase; HAMAP: UPF0176 protein yceA; InterPro IPR001763; KEGG: lbf:LBF_1849 sulfurtransferase; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: UPF0176 protein LEPBI_I1904; Belongs to the UPF0176 family.


ensembl_gene_id: Turpa_2993
symbol: AFM13632.1
gene_biotype: protein_coding
description:
  PFAM: BFD-like [2Fe-2S] binding domain; InterPro IPR007419; KEGG: bph:Bphy_1944 BFD/(2Fe-2S)-binding domain-containing protein; PFAM: BFD-like [2Fe-2S]-binding region; SPTR: BFD domain protein (2Fe-2S)-binding domain protein.


ensembl_gene_id: Turpa_2994
symbol: AFM13633.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial transferase hexapeptide (three repeats); COGs: COG0663 Carbonic anhydrase/acetyltransferase isoleucine patch superfamily; InterPro IPR001451; KEGG: rru:Rru_A2420 hexapaptide repeat-containing transferase; PFAM: Bacterial transferase hexapeptide repeat; SPTR: Transferase hexapeptide repeat.


ensembl_gene_id: Turpa_2995
symbol: AFM13634.1
gene_biotype: protein_coding
description:
  COGs: COG4276 conserved hypothetical protein; KEGG: hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_2996
symbol: AFM13635.1
gene_biotype: protein_coding
description:
  Phage SPO1 DNA polymerase-related protein; PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase, family 4; COGs: COG1573 Uracil-DNA glycosylase; InterPro IPR005122:IPR005273; KEGG: lbl:LBL_0362 uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase-like; SPTR: Uracil-DNA glycosylase; TIGRFAM: Phage SPO1 DNA polymerase-related protein.


ensembl_gene_id: Turpa_2999
symbol: AFM13638.1
gene_biotype: protein_coding
description:
  Tetratricopeptide TPR_2 repeat-containing protein; PFAM: Tetratricopeptide repeat; InterPro IPR013105:IPR001440:IPR019734; KEGG: lic:LIC11670 hypothetical protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_3000
symbol: AFM13639.1
gene_biotype: protein_coding
description:
  PFAM: Polysaccharide deacetylase; InterPro IPR002509; KEGG: sti:Sthe_0329 polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; SPTR: Polysaccharide deacetylase.


ensembl_gene_id: Turpa_3001
symbol: AFM13640.1
gene_biotype: protein_coding
description:
  PFAM: FecR protein; InterPro IPR006860; KEGG: lbf:LBF_1407 lipoprotein lipL45; PFAM: FecR protein; SPTR: LipL45 protein.


ensembl_gene_id: Turpa_3002
symbol: AFM13641.1
gene_biotype: protein_coding
description:
  PFAM: chorismate binding enzyme; COGs: COG0147 Anthranilate/para-aminobenzoate synthase component I; InterPro IPR015890; KEGG: hiq:CGSHiGG_09550 para-aminobenzoate synthase component I; PFAM: Chorismate binding, C-terminal; SPTR: Aminodeoxychorismate synthase, component I.


ensembl_gene_id: Turpa_3003
symbol: AFM13642.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Aminotransferase class IV; KEGG: dfe:Dfer_3376 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_3004
symbol: AFM13643.1
gene_biotype: protein_coding
description:
  2,3-di-O-geranylgeranylglyceryl phosphate reductase; PFAM: FAD dependent oxidoreductase; COGs: COG0644 Dehydrogenase (flavoprotein); InterPro IPR006076; KEGG: vmo:VMUT_1675 geranylgeranyl reductase; PFAM: FAD dependent oxidoreductase; SPTR: Geranylgeranyl reductase.


ensembl_gene_id: Turpa_3005
symbol: AFM13644.1
gene_biotype: protein_coding
description:
  RmuC-domain protein; PFAM: RmuC family; COGs: COG1322 conserved hypothetical protein; InterPro IPR003798; KEGG: aas:Aasi_1321 hypothetical protein; PFAM: RmuC; SPTR: DNA recombination protein rmuC.


ensembl_gene_id: Turpa_3006
symbol: AFM13645.1
gene_biotype: protein_coding
description:
  Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PFAM: EAL domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain; COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterPro IPR013655:IPR000160:IPR001633:IPR000014:IPR001610; KEGG: slt:Slit_2811 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS fold-3; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAC motif; S [...]


ensembl_gene_id: Turpa_3007
symbol: AFM13646.1
gene_biotype: protein_coding
description:
  AAA ATPase central domain protein; PFAM: ATPase family associated with various cellular activities (AAA); COGs: COG0464 ATPase of the AAA+ class; InterPro IPR003959:IPR003593; KEGG: lic:LIC11847 AAA ATPase family protein; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; SPTR: AAA family ATPase.


ensembl_gene_id: Turpa_3008
symbol: nnrE
gene_biotype: protein_coding
description:
  YjeF-related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.  Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epi [...]


ensembl_gene_id: Turpa_3009
symbol: AFM13648.1
gene_biotype: protein_coding
description:
  PFAM: 2Fe-2S iron-sulfur cluster binding domain; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; COGs: COG0479 Succinate dehydrogenase/fumarate reductase Fe-S protein subunit; InterPro IPR001041:IPR004489; KEGG: lbf:LBF_1647 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; PFAM: Ferredoxin; SPTR: Succinate dehydrogenase iron-sulfur subunit SdhB; TIGRFAM: Succinate dehydrogenase/fumarate reductase iron-sulphur protein.


ensembl_gene_id: Turpa_3010
symbol: AFM13649.1
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase cyclophilin type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.


ensembl_gene_id: Turpa_3011
symbol: argC
gene_biotype: protein_coding
description:
  N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.


ensembl_gene_id: Turpa_3012
symbol: AFM13651.1
gene_biotype: protein_coding
description:
  PFAM: Phosphoglycerate mutase family; TIGRFAM: phosphohistidine phosphatase SixA; COGs: COG2062 Phosphohistidine phosphatase SixA; InterPro IPR013078; KEGG: atm:ANT_21950 hypothetical protein; PFAM: Phosphoglycerate mutase; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_3013
symbol: AFM13652.1
gene_biotype: protein_coding
description:
  RDD domain containing protein; PFAM: RDD family; InterPro IPR010432; KEGG: tgr:Tgr7_1788 RDD domain containing protein; PFAM: RDD; SPTR: RDD domain containing protein.


ensembl_gene_id: Turpa_3014
symbol: AFM13653.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF1731; PFAM: NAD dependent epimerase/dehydratase family; Domain of unknown function (DUF1731); TIGRFAM: TIGR01777 family protein; COGs: COG1090 nucleoside-diphosphate sugar epimerase; InterPro IPR001509:IPR013549:IPR010099; KEGG: tmr:Tmar_1443 hypothetical protein; PFAM: Domain of unknown function DUF1731, C-terminal; NAD-dependent epimerase/dehydratase; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_3015
symbol: AFM13654.1
gene_biotype: protein_coding
description:
  PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661:IPR003594; KEGG: bth:BT_4111 two-component system sensor histidine kinase/response regulator; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; SPTR: Signal transduction histidine kinase-like protein.


ensembl_gene_id: Turpa_3016
symbol: mfd
gene_biotype: protein_coding
description:
  Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.


ensembl_gene_id: Turpa_3017
symbol: AFM13656.1
gene_biotype: protein_coding
description:
  tRNA/rRNA methyltransferase (SpoU); Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.


ensembl_gene_id: Turpa_3018
symbol: AFM13657.1
gene_biotype: protein_coding
description:
  Thiamine-phosphate kinase; PFAM: AIR synthase related protein, N-terminal domain; COGs: COG0611 Thiamine monophosphate kinase; InterPro IPR000728; KEGG: rah:Rahaq_3375 thiamine-monophosphate kinase; PFAM: AIR synthase related protein; SPTR: Thiamine-monophosphate kinase.


ensembl_gene_id: Turpa_3019
symbol: proC
gene_biotype: protein_coding
description:
  Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.


ensembl_gene_id: Turpa_3020
symbol: psd
gene_biotype: protein_coding
description:
  Phosphatidylserine decarboxylase proenzyme; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).


ensembl_gene_id: Turpa_3021
symbol: AFM13660.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Metallopeptidase family M24; KEGG: sen:SACE_3553 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_3022
symbol: AFM13661.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Predicted metal-dependent hydrolase; COGs: COG3687 metal-dependent hydrolase; InterPro IPR016516; KEGG: pmy:Pmen_3653 metal-dependent hydrolase-like protein; PFAM: Uncharacterised conserved protein UCP07580; SPTR: Metal-dependent hydrolase-like protein.


ensembl_gene_id: Turpa_3023
symbol: AFM13662.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function (DUF989); COGs: COG3748 membrane protein; KEGG: lbl:LBL_0081 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_3025
symbol: secA
gene_biotype: protein_coding
description:
  Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.


ensembl_gene_id: Turpa_3026
symbol: AFM13665.1
gene_biotype: protein_coding
description:
  PFAM: Polyketide cyclase / dehydrase and lipid transport; InterPro IPR019587; KEGG: pfs:PFLU3359 hypothetical protein; PFAM: Polyketide cyclase/dehydrase; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_3028
symbol: AFM13667.1
gene_biotype: protein_coding
description:
  Exonuclease RNase T and DNA polymerase III; PFAM: Exonuclease; COGs: COG5018 Inhibitor of the KinA pathway to sporulation predicted exonuclease; InterPro IPR006055:IPR013520; KEGG: hch:HCH_00811 inhibitor of the KinA pathway to sporulation, exonuclease; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease; SPTR: Inhibitor of the KinA pathway to sporulation, predicted exonuclease.


ensembl_gene_id: Turpa_3029
symbol: AFM13668.1
gene_biotype: protein_coding
description:
  PFAM: Plasmid stabilisation system protein; InterPro IPR007712; KEGG: npu:Npun_R2795 plasmid stabilization system protein; PFAM: Plasmid stabilisation system; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_3030
symbol: AFM13669.1
gene_biotype: protein_coding
description:
  PFAM: Putative addiction module component; TIGRFAM: putative addiction module component, TIGR02574 family; InterPro IPR013406; KEGG: npu:Npun_R2796 addiction module component; PFAM: Addiction module component, CHP02574; SPTR: Putative addiction module component, TIGR02574 family; TIGRFAM: Addiction module component, CHP02574.


ensembl_gene_id: Turpa_3033
symbol: AFM13672.1
gene_biotype: protein_coding
description:
  PFAM: Putative modulator of DNA gyrase; COGs: COG0312 Zn-dependent protease and their inactivated homologs; KEGG: peptidase U62 modulator of DNA gyrase; SPTR: Peptidase U62 modulator of DNA gyrase.


ensembl_gene_id: Turpa_3035
symbol: AFM13674.1
gene_biotype: protein_coding
description:
  Uncharacterized protein family UPF0310; PFAM: Protein of unknown function DUF55; COGs: COG2947 conserved hypothetical protein; InterPro IPR002740; KEGG: kko:Kkor_2472 hypothetical protein; PFAM: Uncharacterised protein family UPF0310; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_3037
symbol: AFM13676.1
gene_biotype: protein_coding
description:
  PFAM: MarR family; COGs: COG1846 Transcriptional regulators; InterPro IPR000835; KEGG: ddr:Deide_14980 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Putative Transcriptional regulator, MarR family.


ensembl_gene_id: Turpa_3038
symbol: AFM13677.1
gene_biotype: protein_coding
description:
  AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme; COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR000873; KEGG: kko:Kkor_1563 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; SPTR: AMP-dependent synthetase and ligase.


ensembl_gene_id: Turpa_3039
symbol: AFM13678.1
gene_biotype: protein_coding
description:
  PFAM: HpcH/HpaI aldolase/citrate lyase family; COGs: COG2301 Citrate lyase beta subunit; InterPro IPR005000; KEGG: gca:Galf_0008 HpcH/HpaI aldolase; PFAM: HpcH/HpaI aldolase; SPTR: HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.


ensembl_gene_id: Turpa_3041
symbol: AFM13680.1
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: pag:PLES_00261 putative peptidyl-prolyl isomerase; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_3042
symbol: AFM13681.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Zinc dependent phospholipase C; KEGG: gpb:HDN1F_34050 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_3045
symbol: AFM13684.1
gene_biotype: protein_coding
description:
  NLP/P60 protein; PFAM: NlpC/P60 family; InterPro IPR000064; KEGG: sgy:Sgly_1971 NLP/P60 protein; PFAM: NLP/P60; SPTR: NLP/P60 protein.


ensembl_gene_id: Turpa_3047
symbol: AFM13686.1
gene_biotype: protein_coding
description:
  NLP/P60 protein; PFAM: NlpC/P60 family; COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR000064; KEGG: dno:DNO_1067 hypothetical protein; PFAM: NLP/P60; SPTR: Exported protein.


ensembl_gene_id: Turpa_3051
symbol: miaA
gene_biotype: protein_coding
description:
  tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.


ensembl_gene_id: Turpa_3052
symbol: hfq
gene_biotype: protein_coding
description:
  RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.


ensembl_gene_id: Turpa_3054
symbol: AFM13693.1
gene_biotype: protein_coding
description:
  PFAM: Nucleotidyl transferase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; COGs: COG0836 Mannose-1-phosphate guanylyltransferase; InterPro IPR005835; KEGG: lbl:LBL_1919 mannose-1-phosphate guanylyltransferase (GDP); PFAM: Nucleotidyl transferase; SPTR: Mannose-1-phosphate guanylyltransferase (GDP).


ensembl_gene_id: Turpa_3055
symbol: AFM13694.1
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: sml:Smlt2004 RNA polymerase sigma factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70.


ensembl_gene_id: Turpa_3056
symbol: AFM13695.1
gene_biotype: protein_coding
description:
  PFAM: Peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; COGs: COG0193 Peptidyl-tRNA hydrolase; InterPro IPR001328; KEGG: gbr:Gbro_1538 peptidyl-tRNA hydrolase; PFAM: Peptidyl-tRNA hydrolase; SPTR: Peptidyl-tRNA hydrolase.


ensembl_gene_id: Turpa_3057
symbol: AFM13696.1
gene_biotype: protein_coding
description:
  PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit; COGs: COG1593 TRAP-type C4-dicarboxylate transport system large permease component; InterPro IPR004681:IPR010656; KEGG: lbf:LBF_1421 TRAP-type C4-dicarboxylate transport system large permease protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; SPTR: Putative transport system; putative membrane protein; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit.


ensembl_gene_id: Turpa_3058
symbol: AFM13697.1
gene_biotype: protein_coding
description:
  PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component; COGs: COG3090 TRAP-type C4-dicarboxylate transport system small permease component; InterPro IPR007387; KEGG: lbf:LBF_1422 TRAP-type C4-dicarboxylate transport system small permease protein; PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; SPTR: ABC-type transport system, permease; putative membrane protein.


ensembl_gene_id: Turpa_3059
symbol: AFM13698.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial extracellular solute-binding protein, family 7; COGs: COG1638 TRAP-type C4-dicarboxylate transport system periplasmic component; InterPro IPR018389; KEGG: lbf:LBF_1423 TRAP-type C4-dicarboxylate transport system periplasmic protein; PFAM: Extracellular solute-binding protein, family 7, bacteria; SPTR: ABC-type transport system, periplasmic binding protein.


ensembl_gene_id: Turpa_3062
symbol: AFM13701.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF2147; PFAM: Uncharacterized protein conserved in bacteria (DUF2147); COGs: COG4731 conserved hypothetical protein; InterPro IPR019223; KEGG: mxa:MXAN_2208 hypothetical protein; PFAM: Protein of unknown function DUF2147; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_3063
symbol: AFM13702.1
gene_biotype: protein_coding
description:
  Flagellar hook-associated 2 domain-containing protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.


ensembl_gene_id: Turpa_3064
symbol: AFM13703.1
gene_biotype: protein_coding
description:
  PFAM: Glycosyl transferase family 2; COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: mmg:MTBMA_c12790 glycosyltransferase; PFAM: Glycosyl transferase, family 2; SPTR: Predicted glycosyltransferase.


ensembl_gene_id: Turpa_3065
symbol: AFM13704.1
gene_biotype: protein_coding
description:
  Beta-galactosidase; PFAM: Glycosyl hydrolase family 1; TIGRFAM: beta-galactosidase; COGs: COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase; InterPro IPR017736:IPR001360; KEGG: mrb:Mrub_1082 beta-galactosidase; PFAM: Glycoside hydrolase, family 1; SPTR: Beta-galactosidase; TIGRFAM: Glycoside hydrolase, family 1, beta-glucosidase.


ensembl_gene_id: Turpa_3066
symbol: AFM13705.1
gene_biotype: protein_coding
description:
  PFAM: Diacylglycerol kinase catalytic domain; InterPro IPR001206; KEGG: hoh:Hoch_0315 hypothetical protein; PFAM: Diacylglycerol kinase, catalytic region; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_3067
symbol: AFM13706.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function (DUF2505); InterPro IPR019639; KEGG: lic:LIC20240 hypothetical protein; PFAM: Protein of unknown function DUF2505; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_3068
symbol: AFM13707.1
gene_biotype: protein_coding
description:
  PFAM: Response regulator receiver domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain; COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR001789:IPR000160; KEGG: cth:Cthe_1805 response regulator receiver modulated diguanylate cyclase; PFAM: Signal transduction response regulator, receiver region; Diguanylate cyclase, predicted; SMART: Signal transduction response regulator, receiver region; Diguanylate cyclase, predicted; SPTR: Response regulator receiver modulated diguanylate cyclase.


ensembl_gene_id: Turpa_3071
symbol: ispH
gene_biotype: protein_coding
description:
  4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.


ensembl_gene_id: Turpa_3072
symbol: AFM13711.1
gene_biotype: protein_coding
description:
  Tetratricopeptide TPR_1 repeat-containing protein; InterPro IPR019734:IPR001440; KEGG: acm:AciX9_4307 serine/threonine protein kinase; PFAM: Tetratricopeptide TPR-1; SPTR: Serine/threonine protein kinase.


ensembl_gene_id: Turpa_3074
symbol: AFM13713.1
gene_biotype: protein_coding
description:
  DNA-O6-methylguanine--protein-cysteine S-methyltransferase, Transcriptional regulator Ada; PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase; COGs: COG0350 Methylated DNA-protein cysteine methyltransferase; InterPro IPR014048:IPR018060; KEGG: net:Neut_1346 transcriptional regulator, AraC family protein; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; SMART: Helix-turn-helix, AraC domain; SPTR: ADA regulatory protein; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding.


ensembl_gene_id: Turpa_3075
symbol: gyrA
gene_biotype: protein_coding
description:
  DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: Turpa_3077
symbol: AFM13716.1
gene_biotype: protein_coding
description:
  Fructosamine/Ketosamine-3-kinase; PFAM: Fructosamine kinase; COGs: COG3001 conserved hypothetical protein; InterPro IPR016477; KEGG: msv:Mesil_0775 fructosamine/ketosamine-3-kinase; PFAM: Fructosamine/Ketosamine-3-kinase; SPTR: Fructosamine/Ketosamine-3-kinase.


ensembl_gene_id: Turpa_3078
symbol: AFM13717.1
gene_biotype: protein_coding
description:
  PFAM: Glycerophosphoryl diester phosphodiesterase family; COGs: COG0584 Glycerophosphoryl diester phosphodiesterase; InterPro IPR004129; KEGG: gtn:GTNG_2314 glycerophosphoryl diester phosphodiesterase; PFAM: Glycerophosphoryl diester phosphodiesterase; SPTR: Glycerophosphoryl diester phosphodiesterase.


ensembl_gene_id: Turpa_3079
symbol: AFM13718.1
gene_biotype: protein_coding
description:
  PFAM: Phosphoglucose isomerase; COGs: COG0166 Glucose-6-phosphate isomerase; InterPro IPR001672; KEGG: dte:Dester_0262 phosphoglucose isomerase (PGI); PFAM: Phosphoglucose isomerase (PGI); SPTR: Glucose-6-phosphate isomerase.


ensembl_gene_id: Turpa_3080
symbol: AFM13719.1
gene_biotype: protein_coding
description:
  Alpha/beta hydrolase fold containing protein; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: lbl:LBL_1404 hydrolase or acyltransferase; PFAM: Alpha/beta hydrolase fold-1; SPTR: Hydrolase or acyltransferase.


ensembl_gene_id: Turpa_3081
symbol: AFM13720.1
gene_biotype: protein_coding
description:
  Beta-barrel assembly machine subunit BamA; PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein; COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR016474:IPR010827:IPR000184; KEGG: lbf:LBF_1583 Oma87-like outer membrane protein; PFAM: Bacterial surface antigen (D15); Surface antigen variable number; SPTR: Putative outer membrane protein; putative signal peptide; TIGRFAM: Outer membrane assembly protein, YaeT.


ensembl_gene_id: Turpa_3082
symbol: AFM13721.1
gene_biotype: protein_coding
description:
  Phosphoserine phosphatase SerB; TIGRFAM: Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like; phosphoserine phosphatase SerB; COGs: COG0560 Phosphoserine phosphatase; InterPro IPR004469:IPR006383:IPR005834; KEGG: abo:ABO_2442 phosphoserine phosphatase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: Phosphoserine phosphatase SerB, putative; TIGRFAM: Phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB, PSPase-like.


ensembl_gene_id: Turpa_3083
symbol: AFM13722.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function DUF115; COGs: COG2604 conserved hypothetical protein; InterPro IPR002826; KEGG: lbf:LBF_0249 hypothetical protein; PFAM: Protein of unknown function DUF115; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_3084
symbol: AFM13723.1
gene_biotype: protein_coding
description:
  PFAM: PEGA domain; Curli production assembly/transport component CsgG; InterPro IPR013229; KEGG: tga:TGAM_0690 amylopullulanase, putative (Apu); PFAM: PEGA; SPTR: Amylopullulanase, putative (Apu).


ensembl_gene_id: Turpa_3086
symbol: mqo
gene_biotype: protein_coding
description:
  PFAM: Malate:quinone oxidoreductase (Mqo); TIGRFAM: malate:quinone-oxidoreductase; COGs: COG0579 dehydrogenase; HAMAP: Malate:quinone-oxidoreductase; InterPro IPR006231; KEGG: lbf:LBF_1037 malate:quinone oxidoreductase; PFAM: Malate:quinone-oxidoreductase; SPTR: Probable malate:quinone oxidoreductase; TIGRFAM: Malate:quinone-oxidoreductase.


ensembl_gene_id: Turpa_3087
symbol: AFM13726.1
gene_biotype: protein_coding
description:
  PAS sensor protein; PFAM: PAS fold; TIGRFAM: PAS domain S-box; InterPro IPR000014:IPR013767; KEGG: lbl:LBL_1852 hypothetical protein; PFAM: PAS fold; SMART: PAS; SPTR: Putative uncharacterized protein; TIGRFAM: PAS.


ensembl_gene_id: Turpa_3088
symbol: AFM13727.1
gene_biotype: protein_coding
description:
  PFAM: Sodium:neurotransmitter symporter family; COGs: COG0733 Na+-dependent transporter of the SNF family; InterPro IPR000175; KEGG: pbs:Plabr_3346 sodium:neurotransmitter symporter; PFAM: Sodium:neurotransmitter symporter; SPTR: Sodium:neurotransmitter symporter.


ensembl_gene_id: Turpa_3092
symbol: AFM13731.1
gene_biotype: protein_coding
description:
  PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase; COGs: COG1524 Uncharacterized protein of the AP superfamily; InterPro IPR002591; KEGG: lbf:LBF_1560 type I phosphodiesterase / nucleotide pyrophosphatase; PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; SPTR: Putative hydrolase; putative signal peptide.


ensembl_gene_id: Turpa_3094
symbol: xerC-2
gene_biotype: protein_coding
description:
  Tyrosine recombinase XerD subunit; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: Turpa_3095
symbol: AFM13734.1
gene_biotype: protein_coding
description:
  PFAM: Magnesium chelatase, subunit ChlI; TIGRFAM: Mg chelatase-related protein; COGs: COG0606 ATPase with chaperone activity; InterPro IPR004482:IPR000523; KEGG: tsc:TSC_c02140 putative Mg chelatase-like protein; PFAM: Magnesium chelatase, ChlI subunit; SPTR: Putative Mg chelatase-like protein; TIGRFAM: Mg chelatase-related protein.


ensembl_gene_id: Turpa_3096
symbol: AFM13735.1
gene_biotype: protein_coding
description:
  2-methylaconitate cis-trans isomerase; PFAM: PrpF protein; TIGRFAM: probable AcnD-accessory protein PrpF; COGs: COG2828 conserved hypothetical protein; InterPro IPR012709:IPR007400; KEGG: maq:Maqu_1663 putative AcnD-accessory protein PrpF; PFAM: PrpF protein; SPTR: 2-methylaconitate cis-trans isomerase; TIGRFAM: PrpF, AcnD-accessory.


ensembl_gene_id: Turpa_3098
symbol: AFM13737.1
gene_biotype: protein_coding
description:
  PFAM: NmrA-like family; COGs: COG0702 nucleoside-diphosphate-sugar epimerase; InterPro IPR008030; KEGG: lbf:LBF_2893 nucleoside-diphosphate-sugar epimerase; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_3099
symbol: AFM13738.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; COGs: COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; InterPro IPR018060:IPR000005; KEGG: lbf:LBF_2892 AraC-like transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Putative AraC-type transcriptional regulator.


ensembl_gene_id: Turpa_3102
symbol: AFM13741.1
gene_biotype: protein_coding
description:
  Nuclear protein SET; PFAM: SET domain; COGs: COG2940 Proteins containing SET domain; InterPro IPR001214; KEGG: ote:Oter_4528 nuclear protein SET; PFAM: SET; SMART: SET; SPTR: Nuclear protein SET.


ensembl_gene_id: Turpa_3103
symbol: AFM13742.1
gene_biotype: protein_coding
description:
  2-methylisocitrate dehydratase, Fe/S-dependent; PFAM: Aconitase C-terminal domain; Aconitase family (aconitate hydratase); TIGRFAM: 2-methylisocitrate dehydratase, Fe/S-dependent; aconitate hydratase 1; COGs: COG1048 Aconitase A; InterPro IPR012708:IPR001030:IPR000573; KEGG: aconitate hydratase; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel; SPTR: 2-methylisocitrate dehydratase, Fe/S-dependent; TIGRFAM: 2-methylisocitrate dehydratase AcnD, Fe/S-dependent.


ensembl_gene_id: Turpa_3106
symbol: ilvD
gene_biotype: protein_coding
description:
  PFAM: Dehydratase family; TIGRFAM: dihydroxy-acid dehydratase; COGs: COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; HAMAP: Dihydroxy-acid dehydratase; InterPro IPR004404:IPR000581; KEGG: cja:CJA_0477 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; SPTR: Dihydroxy-acid dehydratase; TIGRFAM: Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.


ensembl_gene_id: Turpa_3107
symbol: AFM13746.1
gene_biotype: protein_coding
description:
  PFAM: Exonuclease; COGs: COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonuclease; InterPro IPR006055:IPR013520; KEGG: sku:Sulku_0684 exonuclease RNAase T and DNA polymerase III; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease; SPTR: Exonuclease RNase T and DNA polymerase III.


ensembl_gene_id: Turpa_3108
symbol: AFM13747.1
gene_biotype: protein_coding
description:
  PFAM: Cobalamin adenosyltransferase; TIGRFAM: ATP:cob(I)alamin adenosyltransferase; COGs: COG2096 conserved hypothetical protein; InterPro IPR017858:IPR002779; KEGG: rmr:Rmar_1592 ATP/cobalamin adenosyltransferase; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, EutT/PduO type; SPTR: ATP/cobalamin adenosyltransferase; TIGRFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, PduO-type, N-terminal.


ensembl_gene_id: Turpa_3109
symbol: AFM13748.1
gene_biotype: protein_coding
description:
  PFAM: Pyruvate kinase, barrel domain; Pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase; COGs: COG0469 Pyruvate kinase; InterPro IPR001697:IPR015793:IPR015794; KEGG: lbl:LBL_4267 pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, alpha/beta; SPTR: Pyruvate kinase; TIGRFAM: Pyruvate kinase; Belongs to the pyruvate kinase family.


ensembl_gene_id: Turpa_3111
symbol: AFM13750.1
gene_biotype: protein_coding
description:
  Anti-sigma-factor antagonist; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor; COGs: COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); InterPro IPR003658:IPR002645; KEGG: dpr:Despr_3175 anti-anti-sigma regulatory factor, SpoIIAA; PFAM: Sulphate transporter/antisigma-factor antagonist STAS; SPTR: Anti-sigma factor antagonist; TIGRFAM: Anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family.


ensembl_gene_id: Turpa_3112
symbol: AFM13751.1
gene_biotype: protein_coding
description:
  ATP-binding region ATPase domain protein; InterPro IPR003594; KEGG: pru:PRU_2624 serine-protein kinase; PFAM: ATP-binding region, ATPase-like; SPTR: Putative serine phosphatase RsbU.


ensembl_gene_id: Turpa_3113
symbol: AFM13752.1
gene_biotype: protein_coding
description:
  Protein serine/threonine phosphatase with extracellular sensor; PFAM: HAMP domain; Stage II sporulation protein E (SpoIIE); COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR003660:IPR001932:IPR010822; KEGG: rmr:Rmar_0288 protein serine phosphatase with GAF(s) sensor(s); PFAM: Sporulation stage II, protein E C-terminal; HAMP linker domain; SMART: Protein phosphatase 2C-related; HAMP linker domain; SPTR: Protein serine phosphatase with GAF(S) sensor(S).


ensembl_gene_id: Turpa_3116
symbol: AFM13755.1
gene_biotype: protein_coding
description:
  Acriflavin resistance protein; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: bba:Bd1145 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: Turpa_3117
symbol: AFM13756.1
gene_biotype: protein_coding
description:
  PFAM: Major Facilitator Superfamily; COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: pjd:Pjdr2_1885 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Tetracycline resistence protein TETA(L)/TETK.


ensembl_gene_id: Turpa_3118
symbol: AFM13757.1
gene_biotype: protein_coding
description:
  PFAM: Iron-containing alcohol dehydrogenase; COGs: COG1454 Alcohol dehydrogenase class IV; InterPro IPR001670; KEGG: dal:Dalk_4478 iron-containing alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type; SPTR: Iron-containing alcohol dehydrogenase.


ensembl_gene_id: Turpa_3119
symbol: argH
gene_biotype: protein_coding
description:
  PFAM: Lyase; TIGRFAM: argininosuccinate lyase; COGs: COG0165 Argininosuccinate lyase; HAMAP: Argininosuccinate lyase; InterPro IPR009049:IPR000362; KEGG: lic:LIC11840 argininosuccinate lyase; PFAM: Fumarate lyase; SPTR: Argininosuccinate lyase; TIGRFAM: Argininosuccinate lyase.


ensembl_gene_id: Turpa_3121
symbol: AFM13760.1
gene_biotype: protein_coding
description:
  KpsF/GutQ family protein; PFAM: CBS domain; SIS domain; TIGRFAM: KpsF/GutQ family protein; COGs: COG0794 sugar phosphate isomerase involved in capsule formation; InterPro IPR004800:IPR001347:IPR000644; KEGG: aar:Acear_2183 KpsF/GutQ family protein; PFAM: Sugar isomerase (SIS); Cystathionine beta-synthase, core; SPTR: KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ; Belongs to the SIS family. GutQ/KpsF subfamily.


ensembl_gene_id: Turpa_3122
symbol: xseB
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.


ensembl_gene_id: Turpa_3124
symbol: AFM13763.1
gene_biotype: protein_coding
description:
  PFAM: Glycosyl transferase family 2; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dba:Dbac_1763 glycosyl transferase family 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase family 2; manually curated.


ensembl_gene_id: Turpa_3125
symbol: AFM13764.1
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; InterPro IPR004360; KEGG: pzu:PHZ_c1932 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase.


ensembl_gene_id: Turpa_3126
symbol: tyrS
gene_biotype: protein_coding
description:
  tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily.


ensembl_gene_id: Turpa_3127
symbol: AFM13766.1
gene_biotype: protein_coding
description:
  PFAM: Major Facilitator Superfamily; InterPro IPR011701; KEGG: phe:Phep_2161 major facilitator superfamily protein; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1.


ensembl_gene_id: Turpa_3128
symbol: AFM13767.1
gene_biotype: protein_coding
description:
  Ankyrin; COGs: COG0666 FOG: Ankyrin repeat; InterPro IPR002110; KEGG: tva:TVAG_313850 ankyrin repeat protein; SMART: Ankyrin repeat; SPTR: Ankyrin repeat protein, putative.


ensembl_gene_id: Turpa_3129
symbol: nadE
gene_biotype: protein_coding
description:
  NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family.


ensembl_gene_id: Turpa_3130
symbol: AFM13769.1
gene_biotype: protein_coding
description:
  FAD dependent oxidoreductase; PFAM: Flavin containing amine oxidoreductase; COGs: COG1232 Protoporphyrinogen oxidase; InterPro IPR006076; KEGG: lbl:LBL_3022 amino oxidase; PFAM: FAD dependent oxidoreductase; SPTR: Amino oxidase.


ensembl_gene_id: Turpa_3132
symbol: AFM13771.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: PQ loop repeat; COGs: COG4095 conserved hypothetical protein; KEGG: geo:Geob_3136 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_3134
symbol: AFM13773.1
gene_biotype: protein_coding
description:
  PFAM: Sulfatase; COGs: COG1368 Phosphoglycerol transferase and related protein alkaline phosphatase superfamily; InterPro IPR000917; KEGG: rxy:Rxyl_0662 sulfatase; PFAM: Sulfatase; SPTR: Sulfatase.


ensembl_gene_id: Turpa_3135
symbol: AFM13774.1
gene_biotype: protein_coding
description:
  PFAM: Glycosyl hydrolase family 3 N terminal domain; COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR001764; KEGG: lbf:LBF_0927 beta-glucosidase-like glycosidase; PFAM: Glycoside hydrolase, family 3, N-terminal; SPTR: Putative beta-N-acetylhexosaminidase; putative signal peptide.


ensembl_gene_id: Turpa_3138
symbol: leuD
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.


ensembl_gene_id: Turpa_3139
symbol: leuC
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.


ensembl_gene_id: Turpa_3140
symbol: AFM13779.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119; KEGG: lbf:LBF_1179 LysR family transcriptional regulator; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; SPTR: Putative transcriptional regulator, LysR family.


ensembl_gene_id: Turpa_3141
symbol: AFM13780.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, TraR/DksA family; PFAM: Prokaryotic dksA/traR C4-type zinc finger; TIGRFAM: RNA polymerase-binding protein DksA; COGs: COG1734 DnaK suppressor protein; KEGG: brm:Bmur_0973 TraR/DksA family transcriptional regulator; SPTR: Transcriptional regulator, TraR/DksA family.


ensembl_gene_id: Turpa_3144
symbol: AFM13783.1
gene_biotype: protein_coding
description:
  RNP-1 like RNA-binding protein; PFAM: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); COGs: COG0724 RNA-binding protein (RRM domain); InterPro IPR000504; KEGG: rba:RB10458 RNA-binding protein; PFAM: RNA recognition motif, RNP-1; SMART: RNA recognition motif, RNP-1; SPTR: RNA-binding protein.


ensembl_gene_id: Turpa_3145
symbol: mutL
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.


ensembl_gene_id: Turpa_3146
symbol: AFM13785.1
gene_biotype: protein_coding
description:
  Bifunctional deaminase-reductase domain protein; PFAM: RibD C-terminal domain; COGs: COG1985 Pyrimidine reductase riboflavin biosynthesis; InterPro IPR002734; KEGG: lbf:LBF_0637 pyrimidine reductase; PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; SPTR: Putative riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase.


ensembl_gene_id: Turpa_3149
symbol: AFM13788.1
gene_biotype: protein_coding
description:
  Cell division and transport-associated protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; COGs: COG0848 Biopolymer transport protein; InterPro IPR003400; KEGG: pna:Pnap_3787 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Biopolymer transport protein ExbD/TolR; TC 2.C.1.2.1.


ensembl_gene_id: Turpa_3150
symbol: AFM13789.1
gene_biotype: protein_coding
description:
  PFAM: MotA/TolQ/ExbB proton channel family; COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: bba:Bd0477 TolQ protein; PFAM: MotA/TolQ/ExbB proton channel; SPTR: TolQ protein; TC 2.C.1.1.1.


ensembl_gene_id: Turpa_3151
symbol: AFM13790.1
gene_biotype: protein_coding
description:
  Fibronectin type III domain protein; InterPro IPR003961; KEGG: bba:Bd2579 hypothetical protein; PFAM: Fibronectin, type III; SMART: Fibronectin, type III; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_3152
symbol: AFM13791.1
gene_biotype: protein_coding
description:
  OmpA/MotB domain protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659:IPR006665; KEGG: chu:CHU_3735 outer membrane protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: Outer membrane protein.


ensembl_gene_id: Turpa_3153
symbol: rpmG
gene_biotype: protein_coding
description:
  PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type; HAMAP: Ribosomal protein L33; InterPro IPR001705; KEGG: app:CAP2UW1_2770 50S ribosomal protein L33; PFAM: Ribosomal protein L33; SPTR: 50S ribosomal protein L33; TIGRFAM: Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.


ensembl_gene_id: Turpa_3154
symbol: efp
gene_biotype: protein_coding
description:
  Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.


ensembl_gene_id: Turpa_3160
symbol: AFM13799.1
gene_biotype: protein_coding
description:
  PFAM: NHL repeat; InterPro IPR001258; KEGG: sur:STAUR_1411 hypothetical protein; PFAM: NHL repeat; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_3161
symbol: AFM13800.1
gene_biotype: protein_coding
description:
  PFAM: Fatty acid desaturase; COGs: COG1398 Fatty-acid desaturase; InterPro IPR005804; KEGG: lbf:LBF_2803 fatty-acid desaturase; PFAM: Fatty acid desaturase, type 1; SPTR: Fatty acid desaturase, family 1; putative membrane protein.


ensembl_gene_id: Turpa_3162
symbol: AFM13801.1
gene_biotype: protein_coding
description:
  PFAM: Aminotransferase class I and II; COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: ckn:Calkro_1296 aminotransferase class I and II; PFAM: Aminotransferase, class I/II; SPTR: Aminotransferase, class I and II.


ensembl_gene_id: Turpa_3163
symbol: pgk
gene_biotype: protein_coding
description:
  PFAM: Phosphoglycerate kinase; COGs: COG0126 3-phosphoglycerate kinase; HAMAP: Phosphoglycerate kinase; InterPro IPR001576; KEGG: lil:LA_1703 phosphoglycerate kinase; PFAM: Phosphoglycerate kinase; SPTR: Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.


ensembl_gene_id: Turpa_3164
symbol: AFM13803.1
gene_biotype: protein_coding
description:
  KEGG: app:CAP2UW1_0240 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated.


ensembl_gene_id: Turpa_3167
symbol: AFM13806.1
gene_biotype: protein_coding
description:
  PFAM: Domain of Unknown Function (DUF350); InterPro IPR007140; KEGG: vpe:Varpa_5988 hypothetical protein; PFAM: Protein of unknown function DUF350; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_3168
symbol: AFM13807.1
gene_biotype: protein_coding
description:
  AsmA family protein; InterPro IPR007844; KEGG: spl:Spea_2409 AsmA family protein; PFAM: AsmA; SPTR: AsmA family protein.


ensembl_gene_id: Turpa_3169
symbol: AFM13808.1
gene_biotype: protein_coding
description:
  Major facilitator superfamily MFS_1; PFAM: Bacterial protein of unknown function (DUF894); InterPro IPR011701; KEGG: mei:Msip34_2767 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1.


ensembl_gene_id: Turpa_3171
symbol: AFM13810.1
gene_biotype: protein_coding
description:
  PFAM: Glycosyltransferase family 28 N-terminal domain; Glycosyltransferase family 28 C-terminal domain; COGs: COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; InterPro IPR004276:IPR007235; KEGG: lbf:LBF_1704 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; PFAM: Glycosyl transferase, family 28, C-terminal; Glycosyl transferase, family 28; SPTR: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase.


ensembl_gene_id: Turpa_3172
symbol: AFM13811.1
gene_biotype: protein_coding
description:
  PFAM: HD domain; InterPro IPR003607:IPR006674; KEGG: tde:TDE1033 polyA polymerase family protein; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SMART: Metal-dependent phosphohydrolase, HD region; SPTR: PolyA polymerase family protein.


ensembl_gene_id: Turpa_3173
symbol: AFM13812.1
gene_biotype: protein_coding
description:
  Methyltransferase type 12; PFAM: Methyltransferase domain; InterPro IPR013217; KEGG: lic:LIC10737 3-demethylubiquinone-9 3-methyltransferase; PFAM: Methyltransferase type 12; SPTR: 3-demethylubiquinone-9 3-methyltransferase.


ensembl_gene_id: Turpa_3174
symbol: AFM13813.1
gene_biotype: protein_coding
description:
  Alpha-2-macroglobulin domain protein; PFAM: Alpha-macro-globulin thiol-ester bond-forming region; MG2 domain; Alpha-2-macroglobulin family; Alpha-2-macroglobulin family N-terminal region; COGs: COG2373 Large extracellular alpha-helical protein; InterPro IPR002890:IPR011625:IPR001599:IPR019565; KEGG: sus:Acid_2300 alpha-2-macroglobulin domain-containing protein; PFAM: Alpha-2-macroglobulin, N-terminal; Alpha-2-macroglobulin, N-terminal 2; Alpha-2-macroglobulin; Alpha-2-macroglobulin, thiol-ester bond-forming; SPTR: Alpha-2-macroglobulin domain protein.


ensembl_gene_id: Turpa_3176
symbol: AFM13815.1
gene_biotype: protein_coding
description:
  Protein of unknown function DUF2126; PFAM: Transglutaminase-like superfamily; Bacterial transglutaminase-like N-terminal region; Putative amidoligase enzyme (DUF2126); COGs: COG4196 conserved hypothetical protein; InterPro IPR002931:IPR013589:IPR018667; KEGG: lbf:LBF_3258 hypothetical protein; PFAM: Protein of unknown function DUF2126; Bacterial transglutaminase-like, N-terminal; Transglutaminase-like; SMART: Transglutaminase-like; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_3177
symbol: AFM13816.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial domain of unknown function (DUF403); Domain of unknown function (DUF407); Domain of unknown function (DUF404); COGs: COG2308 conserved hypothetical protein; InterPro IPR007297:IPR007302:IPR007296; KEGG: lbf:LBF_3257 hypothetical protein; PFAM: Protein of unknown function DUF404, bacteria N-terminal; Protein of unknown function DUF407; Protein of unknown function DUF403, bacteria; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_3178
symbol: AFM13817.1
gene_biotype: protein_coding
description:
  Transglutaminase domain-containing protein; PFAM: Transglutaminase-like superfamily; Bacterial transglutaminase-like N-terminal region; COGs: COG1305 Transglutaminase-like protein; InterPro IPR002931:IPR013589; KEGG: lbf:LBF_3256 cysteine protease; PFAM: Transglutaminase-like; Bacterial transglutaminase-like, N-terminal; SMART: Transglutaminase-like; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_3179
symbol: AFM13818.1
gene_biotype: protein_coding
description:
  PFAM: Domain of unknown function (DUF407); Domain of unknown function (DUF404); COGs: COG2308 conserved hypothetical protein; InterPro IPR007297:IPR007302; KEGG: lbf:LBF_3260 hypothetical protein; PFAM: Protein of unknown function DUF404, bacteria N-terminal; Protein of unknown function DUF407; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_3180
symbol: AFM13819.1
gene_biotype: protein_coding
description:
  PFAM: Bacterial domain of unknown function (DUF403); COGs: COG2307 conserved hypothetical protein; InterPro IPR007296; KEGG: lbf:LBF_3259 hypothetical protein; PFAM: Protein of unknown function DUF403, bacteria; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_3181
symbol: AFM13820.1
gene_biotype: protein_coding
description:
  Diguanylate phosphodiesterase; PFAM: EAL domain; EAL-domain associated signalling protein domain; COGs: COG2200 FOG: EAL domain; InterPro IPR001633:IPR018842; KEGG: hmo:HM1_1507 eal domain protein, putative; PFAM: Diguanylate phosphodiesterase, predicted; EAL C-terminal; SMART: Diguanylate phosphodiesterase, predicted; SPTR: C-di-GMP phosphodiesterase type 1.


ensembl_gene_id: Turpa_3182
symbol: AFM13821.1
gene_biotype: protein_coding
description:
  Phospholipase; COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold; KEGG: abo:ABO_0101 phospholipase; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_3183
symbol: AFM13822.1
gene_biotype: protein_coding
description:
  Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.


ensembl_gene_id: Turpa_3184
symbol: AFM13823.1
gene_biotype: protein_coding
description:
  PFAM: Phosphoribosyl transferase domain; TIGRFAM: hypoxanthine phosphoribosyltransferase; COGs: COG0634 Hypoxanthine-guanine phosphoribosyltransferase; InterPro IPR005904:IPR000836; KEGG: drm:Dred_2376 hypoxanthine phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; SPTR: Hypoxanthine phosphoribosyltransferase; TIGRFAM: Hypoxanthine phosphoribosyl transferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.


ensembl_gene_id: Turpa_3185
symbol: AFM13824.1
gene_biotype: protein_coding
description:
  PFAM: CBS domain; InterPro IPR000644; KEGG: CBS domain-containing protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core; SPTR: Putative signal transduction protein with CBS domains.


ensembl_gene_id: Turpa_3186
symbol: AFM13825.1
gene_biotype: protein_coding
description:
  PFAM: Acyltransferase; COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: bba:Bd2719 hypothetical protein; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_3187
symbol: AFM13826.1
gene_biotype: protein_coding
description:
  Protein serine/threonine phosphatase; PFAM: Stage II sporulation protein E (SpoIIE); COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR001932:IPR010822; KEGG: lbi:LEPBI_I1458 putative protein phosphatase; PFAM: Sporulation stage II, protein E C-terminal; SMART: Protein phosphatase 2C-related; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_3188
symbol: AFM13827.1
gene_biotype: protein_coding
description:
  PFAM: Sulfatase; COGs: COG1368 Phosphoglycerol transferase and related protein alkaline phosphatase superfamily; InterPro IPR000917; KEGG: abo:ABO_2265 hypothetical protein; PFAM: Sulfatase; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_3189
symbol: AFM13828.1
gene_biotype: protein_coding
description:
  2-oxoglutarate dehydrogenase E2 component; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).


ensembl_gene_id: Turpa_3190
symbol: glyA
gene_biotype: protein_coding
description:
  Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.


ensembl_gene_id: Turpa_3192
symbol: AFM13831.1
gene_biotype: protein_coding
description:
  PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type; InterPro IPR000223:IPR019759; KEGG: lbf:LBF_0764 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; SPTR: Signal peptidase I; TIGRFAM: Peptidase S26A, signal peptidase I; Belongs to the peptidase S26 family.


ensembl_gene_id: Turpa_3193
symbol: AFM13832.1
gene_biotype: protein_coding
description:
  PFAM: von Willebrand factor type A domain; FHA domain; InterPro IPR002035:IPR000253; KEGG: lil:LA_2094 FHA domain-containing protein; PFAM: von Willebrand factor, type A; Forkhead-associated; SMART: von Willebrand factor, type A; Forkhead-associated; SPTR: FHA domain-containing protein.


ensembl_gene_id: Turpa_3194
symbol: AFM13833.1
gene_biotype: protein_coding
description:
  PFAM: TraB family; TIGRFAM: pheromone shutdown-related protein TraB; COGs: COG1916 Uncharacterized homolog of PrgY (pheromone shutdown protein); InterPro IPR005230:IPR002816; KEGG: lil:LB_126 pheromone shutdown protein; PFAM: Pheromone shutdown-related, TraB; SPTR: Pheromone shutdown protein; TIGRFAM: Pheromone shutdown, TraB.


ensembl_gene_id: Turpa_3195
symbol: AFM13834.1
gene_biotype: protein_coding
description:
  PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase; UDP-N-acetylmuramate--alanine ligase; COGs: COG0773 UDP-N-acetylmuramate-alanine ligase; InterPro IPR000713:IPR013221:IPR004101; KEGG: cpb:Cphamn1_0858 Mur ligase middle domain-containing protein; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; SPTR: UDP-N-acetylmuramate.


ensembl_gene_id: Turpa_3196
symbol: AFM13835.1
gene_biotype: protein_coding
description:
  Adenylate/guanylate cyclase with integral membrane sensor; PFAM: Adenylate and Guanylate cyclase catalytic domain; HAMP domain; COGs: COG2114 Adenylate cyclase family 3 (some protein contain HAMP domain); InterPro IPR001054:IPR003660; KEGG: sfu:Sfum_2802 adenylate/guanylate cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; HAMP linker domain; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase; SPTR: Adenylate/guanylate cyclase.


ensembl_gene_id: Turpa_3197
symbol: AFM13836.1
gene_biotype: protein_coding
description:
  PFAM: DNA recombination-mediator protein A; TIGRFAM: DNA protecting protein DprA; COGs: COG0758 Rossmann fold nucleotide-binding protein involved in DNA uptake; InterPro IPR003488; KEGG: ppm:PPSC2_c2080 DNA protecting protein dpra; PFAM: DNA recombination-mediator protein A; SPTR: DNA protecting protein DprA; TIGRFAM: DNA recombination-mediator protein A.


ensembl_gene_id: Turpa_3198
symbol: AFM13837.1
gene_biotype: protein_coding
description:
  PFAM: Polysaccharide deacetylase; COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: scb:SCAB_59111 polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; SPTR: Polysaccharide deacetylase; manually curated.


ensembl_gene_id: Turpa_3199
symbol: AFM13838.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Smr domain; KEGG: lbl:LBL_1504 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated.


ensembl_gene_id: Turpa_3200
symbol: AFM13839.1
gene_biotype: protein_coding
description:
  PFAM: Lumazine binding domain; TIGRFAM: riboflavin synthase, alpha subunit; COGs: COG0307 Riboflavin synthase alpha chain; InterPro IPR001783; KEGG: pth:PTH_1760 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein; SPTR: Riboflavin synthase alpha chain; TIGRFAM: Lumazine-binding protein.


ensembl_gene_id: Turpa_3201
symbol: AFM13840.1
gene_biotype: protein_coding
description:
  Quinol:cytochrome c oxidoreductase quinone-binding subunit 2; KEGG: lbl:LBL_2274 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_3202
symbol: AFM13841.1
gene_biotype: protein_coding
description:
  Quinol:cytochrome c oxidoreductase monoheme cytochrome subunit; PFAM: Cytochrome c; KEGG: lbf:LBF_1319 hypothetical protein; SPTR: Putative cytochrome c_like protein.


ensembl_gene_id: Turpa_3203
symbol: AFM13842.1
gene_biotype: protein_coding
description:
  PFAM: Protein of unknown function (DUF3341); KEGG: lic:LIC10876 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_3204
symbol: AFM13843.1
gene_biotype: protein_coding
description:
  Quinol:cytochrome c oxidoreductase quinone-binding subunit 1; PFAM: Polysulphide reductase, NrfD; COGs: COG5557 Polysulphide reductase; InterPro IPR005614; KEGG: lic:LIC10875 molybdopterin oxidoredutase membrane subunit; PFAM: Polysulphide reductase, NrfD; SPTR: Molybdopterin oxidoredutase membrane subunit.


ensembl_gene_id: Turpa_3205
symbol: AFM13844.1
gene_biotype: protein_coding
description:
  Quinol:cytochrome c oxidoreductase iron-sulfur protein precursor; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterPro IPR006657; KEGG: bba:Bd1608 molybdopterin oxidoreductase, iron-sulfur binding subunit; PFAM: Molydopterin dinucleotide-binding region; SPTR: Molybdopterin oxidoreductase.


ensembl_gene_id: Turpa_3206
symbol: AFM13845.1
gene_biotype: protein_coding
description:
  Quinol:cytochrome c oxidoreductase pentaheme cytochrome subunit; PFAM: Class III cytochrome C family; KEGG: lbl:LBL_2279 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_3207
symbol: AFM13846.1
gene_biotype: protein_coding
description:
  PFAM: Cytochrome c; InterPro IPR003088; KEGG: lbf:LBF_2612 putative lipoprotein; PFAM: Cytochrome c, class I; SPTR: Putative cytochrome c; putative signal peptide.


ensembl_gene_id: Turpa_3208
symbol: AFM13847.1
gene_biotype: protein_coding
description:
  Sulfate transporter/antisigma-factor antagonist STAS; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor; InterPro IPR002645; PFAM: Sulphate transporter/antisigma-factor antagonist STAS.


ensembl_gene_id: Turpa_3209
symbol: ileS
gene_biotype: protein_coding
description:
  Isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily.


ensembl_gene_id: Turpa_3210
symbol: AFM13849.1
gene_biotype: protein_coding
description:
  PFAM: Cytidylyltransferase; TIGRFAM: cytidyltransferase-related domain; glycerol-3-phosphate cytidylyltransferase; COGs: COG0615 Cytidylyltransferase; InterPro IPR004821:IPR004820; KEGG: ssp:SSP2078 teichoic acid biosynthesis protein; PFAM: Cytidylyltransferase; SPTR: GNAT family protein; TIGRFAM: Cytidyltransferase-related.


ensembl_gene_id: Turpa_3213
symbol: metG
gene_biotype: protein_coding
description:
  methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.


ensembl_gene_id: Turpa_3214
symbol: AFM13853.1
gene_biotype: protein_coding
description:
  Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.


ensembl_gene_id: Turpa_3218
symbol: AFM13857.1
gene_biotype: protein_coding
description:
  PFAM: Adenylate and Guanylate cyclase catalytic domain; COGs: COG2114 Adenylate cyclase family 3 (some protein contain HAMP domain); InterPro IPR001054; KEGG: ter:Tery_3999 adenylate/guanylate cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase; SPTR: Adenylate and Guanylate cyclase catalytic domain protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.


ensembl_gene_id: Turpa_3221
symbol: AFM13860.1
gene_biotype: protein_coding
description:
  PFAM: UvrD/REP helicase; COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: lbf:LBF_2310 DNA helicase-like protein; PFAM: DNA helicase, UvrD/REP type; SPTR: ATP-dependent DNA helicase PcrA.


ensembl_gene_id: Turpa_3222
symbol: AFM13861.1
gene_biotype: protein_coding
description:
  SSU ribosomal protein S6P modification protein; PFAM: RimK-like ATP-grasp domain; TIGRFAM: alpha-L-glutamate ligases, RimK family; COGs: COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); InterPro IPR004666:IPR013651; KEGG: zpr:ZPR_0182 ribosomal protein S6 modification protein; PFAM: ATP-grasp fold, RimK-type; SPTR: Ribosomal protein S6 modification protein; TIGRFAM: S6 modification enzyme RimK; Belongs to the RimK family.


ensembl_gene_id: Turpa_3223
symbol: AFM13862.1
gene_biotype: protein_coding
description:
  Hypothetical protein; PFAM: Acetoacetate decarboxylase (ADC); KEGG: scl:sce0117 hypothetical protein; SPTR: Putative uncharacterized protein.


ensembl_gene_id: Turpa_3224
symbol: AFM13863.1
gene_biotype: protein_coding
description:
  PFAM: ROK family; COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: geb:GM18_1183 ROK family protein; PFAM: ROK; SPTR: Glucokinase.


ensembl_gene_id: Turpa_3227
symbol: AFM13866.1
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154:IPR013149; KEGG: stp:Strop_2630 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like; SPTR: Alcohol dehydrogenase.


