# geneInfo

ensembl_gene_id: STRPO_0013
symbol: EGJ26661.1
gene_biotype: protein_coding
description:
  DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF00717; match to protein family HMM PF01381.


ensembl_gene_id: STRPO_0018
symbol: EGJ27904.1
gene_biotype: protein_coding
description:
  HAD hydrolase, family IA, variant 1; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549.


ensembl_gene_id: STRPO_0019
symbol: EGJ27046.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, DeoR family; Identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279.


ensembl_gene_id: STRPO_0020
symbol: glk_1
gene_biotype: protein_coding
description:
  Glucokinase; Identified by match to protein family HMM PF00480; match to protein family HMM TIGR00744.


ensembl_gene_id: STRPO_0021
symbol: lacA_1
gene_biotype: protein_coding
description:
  Galactose-6-phosphate isomerase, LacA subunit; Identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01118.


ensembl_gene_id: STRPO_0022
symbol: lacB_1
gene_biotype: protein_coding
description:
  Galactose-6-phosphate isomerase, LacB subunit; Identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01119.


ensembl_gene_id: STRPO_0023
symbol: lacC_1
gene_biotype: protein_coding
description:
  Tagatose-6-phosphate kinase; Identified by match to protein family HMM PF00294; match to protein family HMM TIGR01231; match to protein family HMM TIGR03168.


ensembl_gene_id: STRPO_0024
symbol: lacD_1
gene_biotype: protein_coding
description:
  Tagatose-bisphosphate aldolase; Identified by match to protein family HMM PF01791; match to protein family HMM TIGR01232; Belongs to the aldolase LacD family.


ensembl_gene_id: STRPO_0025
symbol: lacF
gene_biotype: protein_coding
description:
  Lactose-specific phosphotransferase enzyme IIA component; Identified by match to protein family HMM PF02255; match to protein family HMM TIGR00823.


ensembl_gene_id: STRPO_0026
symbol: lacE
gene_biotype: protein_coding
description:
  PTS system protein, lactose-specific IIC component; Identified by match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00394; match to protein family HMM TIGR00410; match to protein family HMM TIGR00853.


ensembl_gene_id: STRPO_0027
symbol: lacG
gene_biotype: protein_coding
description:
  6-phospho-beta-galactosidase; Identified by match to protein family HMM PF00232; match to protein family HMM TIGR01233; Belongs to the glycosyl hydrolase 1 family.


ensembl_gene_id: STRPO_0031
symbol: EGJ27278.1
gene_biotype: protein_coding
description:
  Resolvase, N-terminal domain protein; Identified by match to protein family HMM PF00239; match to protein family HMM PF07508.


ensembl_gene_id: STRPO_0034
symbol: EGJ26389.1
gene_biotype: protein_coding
description:
  Gram-positive signal peptide protein, YSIRK family; Identified by match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168.


ensembl_gene_id: STRPO_0044
symbol: EGJ28005.1
gene_biotype: protein_coding
description:
  Phage/plasmid primase, P4 family, C-terminal domain protein; Identified by match to protein family HMM PF08706; match to protein family HMM TIGR01613.


ensembl_gene_id: STRPO_0049
symbol: metK_1
gene_biotype: protein_coding
description:
  Methionine adenosyltransferase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00438; match to protein family HMM PF02772; match to protein family HMM PF02773; match to protein family HMM TIGR01034.


ensembl_gene_id: STRPO_0052
symbol: EGJ27150.1
gene_biotype: protein_coding
description:
  DNA (cytosine-5-)-methyltransferase; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195.


ensembl_gene_id: STRPO_0053
symbol: EGJ28244.1
gene_biotype: protein_coding
description:
  Prophage LambdaSa04, methyltransferase, C-5 cytosine-specific family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts.


ensembl_gene_id: STRPO_0054
symbol: EGJ26857.1
gene_biotype: protein_coding
description:
  Modification methylase Rho11sI family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts.


ensembl_gene_id: STRPO_0063
symbol: EGJ26399.1
gene_biotype: protein_coding
description:
  Phage portal protein, HK97 family; Identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537.


ensembl_gene_id: STRPO_0064
symbol: clpP_1
gene_biotype: protein_coding
description:
  ATP-dependent Clp endopeptidase, proteolytic subunit ClpP; Identified by match to protein family HMM PF00574.


ensembl_gene_id: STRPO_0065
symbol: EGJ26582.1
gene_biotype: protein_coding
description:
  Phage major capsid protein, HK97 family; Identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554.


ensembl_gene_id: STRPO_0072
symbol: EGJ27901.1
gene_biotype: protein_coding
description:
  Phage tail tape measure protein, TP901 family; Identified by match to protein family HMM PF05017; match to protein family HMM TIGR01760.


ensembl_gene_id: STRPO_0074
symbol: EGJ28259.1
gene_biotype: protein_coding
description:
  Phage minor structural protein, N-terminal domain protein; Identified by match to protein family HMM TIGR01665.


ensembl_gene_id: STRPO_0075
symbol: EGJ27186.1
gene_biotype: protein_coding
description:
  Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF05895.


ensembl_gene_id: STRPO_0076
symbol: EGJ26509.1
gene_biotype: protein_coding
description:
  Toxin secretion/phage lysis holin; Identified by match to protein family HMM PF05105; match to protein family HMM TIGR01593.


ensembl_gene_id: STRPO_0077
symbol: EGJ27819.1
gene_biotype: protein_coding
description:
  Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF01832.


ensembl_gene_id: STRPO_0078
symbol: EGJ26491.1
gene_biotype: protein_coding
description:
  LysM domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF01476.


ensembl_gene_id: STRPO_0080
symbol: EGJ26824.1
gene_biotype: protein_coding
description:
  Resolvase, N-terminal domain protein; Identified by match to protein family HMM PF00239; match to protein family HMM PF07508; overlaps another CDS with the same product name.


ensembl_gene_id: STRPO_0082
symbol: EGJ27574.1
gene_biotype: protein_coding
description:
  Cadmium resistance transporter family protein; Identified by match to protein family HMM PF03596; match to protein family HMM TIGR00779.


ensembl_gene_id: STRPO_0084
symbol: EGJ26488.1
gene_biotype: protein_coding
description:
  Methyltransferase domain protein; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242.


ensembl_gene_id: STRPO_0086
symbol: EGJ28032.1
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibD C-terminal domain protein; Identified by match to protein family HMM PF01872.


ensembl_gene_id: STRPO_0095
symbol: naiP
gene_biotype: protein_coding
description:
  Transporter, major facilitator family protein; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.


ensembl_gene_id: STRPO_0097
symbol: rluB_1
gene_biotype: protein_coding
description:
  Pseudouridylate synthase; Identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: STRPO_0098
symbol: EGJ27618.1
gene_biotype: protein_coding
description:
  Putative magnesium and cobalt transport protein CorA; Identified by match to protein family HMM PF01544.


ensembl_gene_id: STRPO_0101
symbol: cgtA
gene_biotype: protein_coding
description:
  Obg family GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.


ensembl_gene_id: STRPO_0103
symbol: pnuC
gene_biotype: protein_coding
description:
  Nicotinamide mononucleotide transporter PnuC; Identified by match to protein family HMM PF04973; match to protein family HMM TIGR01528.


ensembl_gene_id: STRPO_0105
symbol: artM_1
gene_biotype: protein_coding
description:
  Arginine ABC transporter, ATP-binding protein ArtM; Identified by match to protein family HMM PF00005.


ensembl_gene_id: STRPO_0106
symbol: glnP_1
gene_biotype: protein_coding
description:
  Lysine-arginine-ornithine-binding periplasmic protein; Identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726.


ensembl_gene_id: STRPO_0107
symbol: uvrB
gene_biotype: protein_coding
description:
  Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]


ensembl_gene_id: STRPO_0109
symbol: dltA
gene_biotype: protein_coding
description:
  D-alanine--poly(phosphoribitol) ligase, subunit 1; Catalyzes the first step in the D-alanylation of lipoteichoic acid (LTA), the activation of D-alanine and its transfer onto the D- alanyl carrier protein (Dcp) DltC. In an ATP-dependent two-step reaction, forms a high energy D-alanyl-AMP intermediate, followed by transfer of the D-alanyl residue as a thiol ester to the phosphopantheinyl prosthetic group of the Dcp. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall. Belongs to [...]


ensembl_gene_id: STRPO_0111
symbol: dltC
gene_biotype: protein_coding
description:
  D-alanine--poly(phosphoribitol) ligase, subunit 2; Carrier protein involved in the D-alanylation of lipoteichoic acid (LTA). The loading of thioester-linked D-alanine onto DltC is catalyzed by D-alanine--D-alanyl carrier protein ligase DltA. The DltC- carried D-alanyl group is further transferred to cell membrane phosphatidylglycerol (PG) by forming an ester bond, probably catalyzed by DltD. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall.


ensembl_gene_id: STRPO_0112
symbol: dltD
gene_biotype: protein_coding
description:
  DltD C-terminal domain protein; Identified by match to protein family HMM PF04914; match to protein family HMM PF04915; match to protein family HMM PF04918.


ensembl_gene_id: STRPO_0116
symbol: malR
gene_biotype: protein_coding
description:
  Transcriptional regulator, LacI family; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532.


ensembl_gene_id: STRPO_0117
symbol: malQ
gene_biotype: protein_coding
description:
  4-alpha-glucanotransferase; Identified by match to protein family HMM PF02446; match to protein family HMM TIGR00217.


ensembl_gene_id: STRPO_0118
symbol: glgP
gene_biotype: protein_coding
description:
  Putative glycogen phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.


ensembl_gene_id: STRPO_0122
symbol: miaA
gene_biotype: protein_coding
description:
  tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.


ensembl_gene_id: STRPO_0123
symbol: hflX
gene_biotype: protein_coding
description:
  GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.


ensembl_gene_id: STRPO_0125
symbol: rnz
gene_biotype: protein_coding
description:
  Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.


ensembl_gene_id: STRPO_0126
symbol: EGJ27535.1
gene_biotype: protein_coding
description:
  Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: STRPO_0127
symbol: recJ
gene_biotype: protein_coding
description:
  single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644.


ensembl_gene_id: STRPO_0128
symbol: apt
gene_biotype: protein_coding
description:
  Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.


ensembl_gene_id: STRPO_0129
symbol: dnaD_3
gene_biotype: protein_coding
description:
  DnaD domain protein; Identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446.


ensembl_gene_id: STRPO_0130
symbol: nth
gene_biotype: protein_coding
description:
  Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.


ensembl_gene_id: STRPO_0132
symbol: EGJ27877.1
gene_biotype: protein_coding
description:
  Dinuclear metal center protein, YbgI family; Identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486.


ensembl_gene_id: STRPO_0135
symbol: rfbA
gene_biotype: protein_coding
description:
  Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.


ensembl_gene_id: STRPO_0137
symbol: rffG
gene_biotype: protein_coding
description:
  dTDP-glucose 4,6-dehydratase; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.


ensembl_gene_id: STRPO_0144
symbol: EGJ27177.1
gene_biotype: protein_coding
description:
  Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.


ensembl_gene_id: STRPO_0145
symbol: alsS
gene_biotype: protein_coding
description:
  Acetolactate synthase, catabolic; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR02418; Belongs to the TPP enzyme family.


ensembl_gene_id: STRPO_0146
symbol: budA
gene_biotype: protein_coding
description:
  Alpha-acetolactate decarboxylase; Identified by match to protein family HMM PF03306; match to protein family HMM TIGR01252; Belongs to the alpha-acetolactate decarboxylase family.


ensembl_gene_id: STRPO_0147
symbol: fbpS
gene_biotype: protein_coding
description:
  Fibronectin-binding protein A, N-terminal domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF05670; match to protein family HMM PF05833.


ensembl_gene_id: STRPO_0149
symbol: EGJ28210.1
gene_biotype: protein_coding
description:
  Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: STRPO_0151
symbol: rnjB
gene_biotype: protein_coding
description:
  Ribonuclease J 2; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.


ensembl_gene_id: STRPO_0155
symbol: acoA
gene_biotype: protein_coding
description:
  TPP-dependent acetoin dehydrogenase complex, E1 component, alpha subunit; Identified by match to protein family HMM PF00676.


ensembl_gene_id: STRPO_0156
symbol: acoB
gene_biotype: protein_coding
description:
  TPP-dependent acetoin dehydrogenase complex, E1 component, beta subunit; Identified by match to protein family HMM PF02779; match to protein family HMM PF02780.


ensembl_gene_id: STRPO_0157
symbol: pdhC-2
gene_biotype: protein_coding
description:
  Putative pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; Identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817.


ensembl_gene_id: STRPO_0158
symbol: lpdA_1
gene_biotype: protein_coding
description:
  Dihydrolipoyl dehydrogenase; Identified by match to protein family HMM PF00070; match to protein family HMM PF00364; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350.


ensembl_gene_id: STRPO_0159
symbol: lplJ
gene_biotype: protein_coding
description:
  Lipoyltransferase and lipoate-protein ligase; Identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545.


ensembl_gene_id: STRPO_0161
symbol: EGJ26949.1
gene_biotype: protein_coding
description:
  LPXTG-motif cell wall anchor domain protein; Identified by match to protein family HMM PF00746; match to protein family HMM PF01391; match to protein family HMM TIGR01167.


ensembl_gene_id: STRPO_0162
symbol: EGJ27801.1
gene_biotype: protein_coding
description:
  CobB/CobQ-like glutamine amidotransferase domain protein; Identified by match to protein family HMM PF07685.


ensembl_gene_id: STRPO_0163
symbol: EGJ26654.1
gene_biotype: protein_coding
description:
  Mur ligase middle domain protein; Identified by match to protein family HMM PF08245; match to protein family HMM PF08353.


ensembl_gene_id: STRPO_0164
symbol: dacA
gene_biotype: protein_coding
description:
  TIGR00159 family protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.


ensembl_gene_id: STRPO_0165
symbol: EGJ28248.1
gene_biotype: protein_coding
description:
  Gram-positive signal peptide protein, YSIRK family; Identified by match to protein family HMM PF07949.


ensembl_gene_id: STRPO_0166
symbol: glmM
gene_biotype: protein_coding
description:
  Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.


ensembl_gene_id: STRPO_0168
symbol: hemN
gene_biotype: protein_coding
description:
  Putative coproporphyrinogen dehydrogenase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: STRPO_0170
symbol: yutF
gene_biotype: protein_coding
description:
  HAD hydrolase, TIGR01457 family; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01457; match to protein family HMM TIGR01460.


ensembl_gene_id: STRPO_0176
symbol: EGJ27225.1
gene_biotype: protein_coding
description:
  CHAP domain protein; Identified by match to protein family HMM PF05257; match to protein family HMM PF08481.


ensembl_gene_id: STRPO_0178
symbol: lepA
gene_biotype: protein_coding
description:
  GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.


ensembl_gene_id: STRPO_0179
symbol: msrB
gene_biotype: protein_coding
description:
  methionine-R-sulfoxide reductase; Identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357.


ensembl_gene_id: STRPO_0188
symbol: iolS
gene_biotype: protein_coding
description:
  Oxidoreductase, aldo/keto reductase family protein; Identified by match to protein family HMM PF00248.


ensembl_gene_id: STRPO_0193
symbol: yfnB_2
gene_biotype: protein_coding
description:
  HAD hydrolase, TIGR02254 family; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR02254.


ensembl_gene_id: STRPO_0194
symbol: gabD1
gene_biotype: protein_coding
description:
  Putative succinate-semialdehyde dehydrogenase (NAD(P)(+)); Identified by match to protein family HMM PF00171.


ensembl_gene_id: STRPO_0195
symbol: EGJ26712.1
gene_biotype: protein_coding
description:
  Cof-like hydrolase; Identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484.


ensembl_gene_id: STRPO_0196
symbol: uvrC
gene_biotype: protein_coding
description:
  Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.


ensembl_gene_id: STRPO_0198
symbol: pepV
gene_biotype: protein_coding
description:
  Dipeptidase PepV; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01886; match to protein family HMM TIGR01887.


ensembl_gene_id: STRPO_0199
symbol: trmE
gene_biotype: protein_coding
description:
  tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.


ensembl_gene_id: STRPO_0200
symbol: rpiA
gene_biotype: protein_coding
description:
  Ribose 5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.


ensembl_gene_id: STRPO_0201
symbol: deoB
gene_biotype: protein_coding
description:
  Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.


ensembl_gene_id: STRPO_0203
symbol: punA
gene_biotype: protein_coding
description:
  Purine nucleoside phosphorylase I, inosine and guanosine-specific; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.


ensembl_gene_id: STRPO_0204
symbol: deoD
gene_biotype: protein_coding
description:
  Purine nucleoside phosphorylase; Identified by match to protein family HMM PF01048; match to protein family HMM TIGR00107.


ensembl_gene_id: STRPO_0206
symbol: cysB
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: STRPO_0207
symbol: wzg
gene_biotype: protein_coding
description:
  Cell envelope-like function transcriptional attenuator common domain protein; Identified by match to protein family HMM PF02916; match to protein family HMM PF03816; match to protein family HMM TIGR00350.


ensembl_gene_id: STRPO_0211
symbol: capD-2
gene_biotype: protein_coding
description:
  Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.


ensembl_gene_id: STRPO_0213
symbol: EGJ26965.1
gene_biotype: protein_coding
description:
  NAD dependent epimerase/dehydratase family protein; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993.


ensembl_gene_id: STRPO_0220
symbol: EGJ26655.1
gene_biotype: protein_coding
description:
  Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01554; match to protein family HMM PF01943.


ensembl_gene_id: STRPO_0221
symbol: capD
gene_biotype: protein_coding
description:
  Capsular polysaccharide biosynthesis protein CapD; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM PF08485.


ensembl_gene_id: STRPO_0222
symbol: EGJ27578.1
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine 2-epimerase; Identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236.


ensembl_gene_id: STRPO_0223
symbol: EGJ26702.1
gene_biotype: protein_coding
description:
  NAD dependent epimerase/dehydratase family protein; Identified by match to protein family HMM PF01370; match to protein family HMM PF07993.


ensembl_gene_id: STRPO_0224
symbol: rfbB
gene_biotype: protein_coding
description:
  NAD dependent epimerase/dehydratase family protein; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.


ensembl_gene_id: STRPO_0225
symbol: hasB2
gene_biotype: protein_coding
description:
  Nucleotide sugar dehydrogenase; Identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026.


ensembl_gene_id: STRPO_0228
symbol: pyrF
gene_biotype: protein_coding
description:
  Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.


ensembl_gene_id: STRPO_0229
symbol: pyrE
gene_biotype: protein_coding
description:
  Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).


ensembl_gene_id: STRPO_0232
symbol: yckB
gene_biotype: protein_coding
description:
  ABC transporter, substrate-binding protein, family 3; Identified by match to protein family HMM PF00497; Belongs to the bacterial solute-binding protein 3 family.


ensembl_gene_id: STRPO_0233
symbol: yecS_3
gene_biotype: protein_coding
description:
  ABC transporter, permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.


ensembl_gene_id: STRPO_0234
symbol: ung
gene_biotype: protein_coding
description:
  uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.


ensembl_gene_id: STRPO_0235
symbol: plsY
gene_biotype: protein_coding
description:
  Acyl-phosphate glycerol 3-phosphate acyltransferase; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.


ensembl_gene_id: STRPO_0236
symbol: parE
gene_biotype: protein_coding
description:
  DNA topoisomerase IV, B subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 2 subfamily.


ensembl_gene_id: STRPO_0238
symbol: parC
gene_biotype: protein_coding
description:
  DNA topoisomerase IV, A subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 2 subfamily.


ensembl_gene_id: STRPO_0239
symbol: ilvE
gene_biotype: protein_coding
description:
  Branched-chain-amino-acid transaminase; Identified by match to protein family HMM PF01063; match to protein family HMM TIGR01123.


ensembl_gene_id: STRPO_0245
symbol: EGJ26888.1
gene_biotype: protein_coding
description:
  Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589.


ensembl_gene_id: STRPO_0259
symbol: EGJ27986.1
gene_biotype: protein_coding
description:
  Bifunctional DNA primase/polymerase, N-terminal domain protein; Identified by match to protein family HMM PF08708; match to protein family HMM PF09250.


ensembl_gene_id: STRPO_0295
symbol: EGJ27544.1
gene_biotype: protein_coding
description:
  Putative phage tail component, N-terminal domain protein; Identified by match to protein family HMM PF05709; match to protein family HMM TIGR01633.


ensembl_gene_id: STRPO_0296
symbol: EGJ26424.1
gene_biotype: protein_coding
description:
  Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; Identified by match to protein family HMM PF01832.


ensembl_gene_id: STRPO_0301
symbol: EGJ26477.1
gene_biotype: protein_coding
description:
  Phage holin, LL-H family; Identified by match to protein family HMM PF09682; match to protein family HMM TIGR01673.


ensembl_gene_id: STRPO_0302
symbol: EGJ27175.1
gene_biotype: protein_coding
description:
  Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; Identified by match to protein family HMM PF01832; match to protein family HMM PF05382.


ensembl_gene_id: STRPO_0311
symbol: yvoA_2
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00392.


ensembl_gene_id: STRPO_0312
symbol: dnaE
gene_biotype: protein_coding
description:
  DNA polymerase III, alpha subunit; Identified by match to protein family HMM PF01336; match to protein family HMM PF07733; match to protein family HMM TIGR00594.


ensembl_gene_id: STRPO_0313
symbol: pfkA
gene_biotype: protein_coding
description:
  6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.


ensembl_gene_id: STRPO_0314
symbol: pyk
gene_biotype: protein_coding
description:
  Pyruvate kinase; Identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM PF03328; match to protein family HMM TIGR01064; Belongs to the pyruvate kinase family.


ensembl_gene_id: STRPO_0315
symbol: lepB_1
gene_biotype: protein_coding
description:
  Signal peptidase I; Identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; Belongs to the peptidase S26 family.


ensembl_gene_id: STRPO_0316
symbol: glmS
gene_biotype: protein_coding
description:
  Glutamine-fructose-6-phosphate transaminase (isomerizing); Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.


ensembl_gene_id: STRPO_0317
symbol: mtlA
gene_biotype: protein_coding
description:
  EIICBA-Mtl; Identified by match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00851.


ensembl_gene_id: STRPO_0319
symbol: mtlF
gene_biotype: protein_coding
description:
  Mannitol-specific phosphotransferase enzyme IIA component; Identified by match to protein family HMM PF00359.


ensembl_gene_id: STRPO_0320
symbol: mtlD
gene_biotype: protein_coding
description:
  Mannitol dehydrogenase C-terminal domain protein; Identified by match to protein family HMM PF01232; match to protein family HMM PF08125.


ensembl_gene_id: STRPO_0321
symbol: EGJ28074.1
gene_biotype: protein_coding
description:
  Putative alkylphosphonate utilization operon protein PhnA; Identified by match to protein family HMM PF03831; match to protein family HMM PF08274; match to protein family HMM TIGR00686.


ensembl_gene_id: STRPO_0322
symbol: artQ
gene_biotype: protein_coding
description:
  Putative arginine ABC transporter, permease protein ArtQ; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.


ensembl_gene_id: STRPO_0323
symbol: glnQ_1
gene_biotype: protein_coding
description:
  Glutamine ABC transporter, ATP-binding protein GlnQ; Identified by match to protein family HMM PF00005.


ensembl_gene_id: STRPO_0324
symbol: fliY
gene_biotype: protein_coding
description:
  ABC transporter, substrate-binding protein, family 3; Identified by match to protein family HMM PF00497.


ensembl_gene_id: STRPO_0326
symbol: fieF
gene_biotype: protein_coding
description:
  Cation diffusion facilitator family transporter; Identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.


ensembl_gene_id: STRPO_0327
symbol: pcrA
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase PcrA; Identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073.


ensembl_gene_id: STRPO_0336
symbol: EGJ27911.1
gene_biotype: protein_coding
description:
  TrkA C-terminal domain protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF02080.


ensembl_gene_id: STRPO_0337
symbol: tpx
gene_biotype: protein_coding
description:
  Redoxin family protein; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.


ensembl_gene_id: STRPO_0344
symbol: truB
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.


ensembl_gene_id: STRPO_0345
symbol: ribF
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibF; Identified by match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; Belongs to the ribF family.


ensembl_gene_id: STRPO_0346
symbol: spxA_1
gene_biotype: protein_coding
description:
  Transcriptional regulator Spx; Interferes with activator-stimulated transcription by interaction with the RNA polymerase alpha-CTD. May function to globally reduce transcription of genes involved in growth- and development- promoting processes and to increase transcription of genes involved in thiol homeostasis, during periods of extreme stress. Belongs to the ArsC family. Spx subfamily.


ensembl_gene_id: STRPO_0349
symbol: pstS
gene_biotype: protein_coding
description:
  Phosphate binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR02136.


ensembl_gene_id: STRPO_0350
symbol: pstC_1
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, permease protein PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: STRPO_0351
symbol: pstA_1
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, permease protein PstA; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974.


ensembl_gene_id: STRPO_0352
symbol: pstB_1
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.


ensembl_gene_id: STRPO_0354
symbol: phoU_1
gene_biotype: protein_coding
description:
  Phosphate transport system regulatory protein PhoU; Plays a role in the regulation of phosphate uptake.


ensembl_gene_id: STRPO_0356
symbol: ciaR
gene_biotype: protein_coding
description:
  Putative response regulator ArlR; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.


ensembl_gene_id: STRPO_0357
symbol: ciaH
gene_biotype: protein_coding
description:
  ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.


ensembl_gene_id: STRPO_0359
symbol: coaA
gene_biotype: protein_coding
description:
  Pantothenate kinase; Identified by match to protein family HMM PF00485; match to protein family HMM TIGR00554.


ensembl_gene_id: STRPO_0360
symbol: rsmC
gene_biotype: protein_coding
description:
  Methyltransferase small domain protein; Identified by match to protein family HMM PF01170; match to protein family HMM PF05175.


ensembl_gene_id: STRPO_0361
symbol: deoA
gene_biotype: protein_coding
description:
  Pyrimidine-nucleoside phosphorylase; Identified by match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM PF07831; match to protein family HMM TIGR02644.


ensembl_gene_id: STRPO_0362
symbol: deoC
gene_biotype: protein_coding
description:
  Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.


ensembl_gene_id: STRPO_0363
symbol: cdd
gene_biotype: protein_coding
description:
  Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: STRPO_0368
symbol: scpA_1
gene_biotype: protein_coding
description:
  Putative c5a peptidase; Identified by match to protein family HMM PF00082; match to protein family HMM PF02225; match to protein family HMM PF06280.


ensembl_gene_id: STRPO_0369
symbol: pgcA
gene_biotype: protein_coding
description:
  Phosphoglucomutase; Identified by match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880.


ensembl_gene_id: STRPO_0371
symbol: coaC
gene_biotype: protein_coding
description:
  Phosphopantothenoylcysteine decarboxylase; Identified by match to protein family HMM PF02441; match to protein family HMM TIGR02113.


ensembl_gene_id: STRPO_0372
symbol: coaB
gene_biotype: protein_coding
description:
  Phosphopantothenate--cysteine ligase; Identified by match to protein family HMM PF04127; match to protein family HMM TIGR02114.


ensembl_gene_id: STRPO_0374
symbol: fhs_1
gene_biotype: protein_coding
description:
  Formate--tetrahydrofolate ligase; Identified by match to protein family HMM PF01268; Belongs to the formate--tetrahydrofolate ligase family.


ensembl_gene_id: STRPO_0375
symbol: cls
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF00614; Belongs to the phospholipase D family. Cardiolipin synthase subfamily.


ensembl_gene_id: STRPO_0376
symbol: asd
gene_biotype: protein_coding
description:
  Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.


ensembl_gene_id: STRPO_0382
symbol: dagK_2
gene_biotype: protein_coding
description:
  Lipid kinase, YegS/Rv2252/BmrU family; Identified by match to protein family HMM PF00781; match to protein family HMM TIGR00147.


ensembl_gene_id: STRPO_0383
symbol: yqfA
gene_biotype: protein_coding
description:
  Channel protein, hemolysin III family; Identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065.


ensembl_gene_id: STRPO_0385
symbol: ylqF
gene_biotype: protein_coding
description:
  Ribosome biogenesis GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.


ensembl_gene_id: STRPO_0388
symbol: dprA
gene_biotype: protein_coding
description:
  DNA protecting protein DprA; Identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732.


ensembl_gene_id: STRPO_0389
symbol: topA
gene_biotype: protein_coding
description:
  DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]


ensembl_gene_id: STRPO_0390
symbol: cynR_2
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.


ensembl_gene_id: STRPO_0392
symbol: ldhD
gene_biotype: protein_coding
description:
  Putative D-lactate dehydrogenase; Identified by match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: STRPO_0395
symbol: trmFO
gene_biotype: protein_coding
description:
  tRNA:m(5)U-54 methyltransferase; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily.


ensembl_gene_id: STRPO_0399
symbol: graR
gene_biotype: protein_coding
description:
  Putative response regulator protein GraR; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.


ensembl_gene_id: STRPO_0400
symbol: EGJ27079.1
gene_biotype: protein_coding
description:
  ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF02518.


ensembl_gene_id: STRPO_0401
symbol: EGJ27921.1
gene_biotype: protein_coding
description:
  Sugar-specific transcriptional regulator, TrmB family; Identified by match to protein family HMM PF01978.


ensembl_gene_id: STRPO_0404
symbol: xerS
gene_biotype: protein_coding
description:
  Site-specific tyrosine recombinase XerS; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division.


ensembl_gene_id: STRPO_0408
symbol: EGJ28053.1
gene_biotype: protein_coding
description:
  SIS domain protein; Identified by match to protein family HMM PF01380; match to protein family HMM PF01418.


ensembl_gene_id: STRPO_0411
symbol: yhhX
gene_biotype: protein_coding
description:
  Oxidoreductase, NAD-binding domain protein; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.


ensembl_gene_id: STRPO_0412
symbol: EGJ28104.1
gene_biotype: protein_coding
description:
  Putative HTH-type transcriptional regulator PrtR; Identified by match to protein family HMM PF00717; match to protein family HMM PF01381.


ensembl_gene_id: STRPO_0413
symbol: EGJ27447.1
gene_biotype: protein_coding
description:
  Oxidoreductase NAD-binding domain protein; Identified by match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF08022.


ensembl_gene_id: STRPO_0414
symbol: ffh
gene_biotype: protein_coding
description:
  Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.


ensembl_gene_id: STRPO_0415
symbol: EGJ26905.1
gene_biotype: protein_coding
description:
  Helix-turn-helix protein, YlxM/p13 family; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.


ensembl_gene_id: STRPO_0416
symbol: yvoA_3
gene_biotype: protein_coding
description:
  UbiC transcription regulator-associated domain protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07702.


ensembl_gene_id: STRPO_0417
symbol: guaA
gene_biotype: protein_coding
description:
  GMP synthase (glutamine-hydrolyzing), C-terminal domain protein; Catalyzes the synthesis of GMP from XMP.


ensembl_gene_id: STRPO_0419
symbol: dtpT
gene_biotype: protein_coding
description:
  Amino acid/peptide transporter; Identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924.


ensembl_gene_id: STRPO_0425
symbol: gyrA
gene_biotype: protein_coding
description:
  DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: STRPO_0426
symbol: ldh
gene_biotype: protein_coding
description:
  L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.


ensembl_gene_id: STRPO_0428
symbol: noxE
gene_biotype: protein_coding
description:
  NADH oxidase; Identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992.


ensembl_gene_id: STRPO_0431
symbol: glyA
gene_biotype: protein_coding
description:
  Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.


ensembl_gene_id: STRPO_0432
symbol: rimN
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057; Belongs to the SUA5 family.


ensembl_gene_id: STRPO_0433
symbol: prmC
gene_biotype: protein_coding
description:
  protein-(glutamine-N5) methyltransferase, release factor-specific; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.


ensembl_gene_id: STRPO_0434
symbol: prfA
gene_biotype: protein_coding
description:
  Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.


ensembl_gene_id: STRPO_0436
symbol: xylH
gene_biotype: protein_coding
description:
  4-oxalocrotonate tautomerase family enzyme; Identified by match to protein family HMM PF01361; Belongs to the 4-oxalocrotonate tautomerase family.


ensembl_gene_id: STRPO_0437
symbol: apbE
gene_biotype: protein_coding
description:
  ApbE family protein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.


ensembl_gene_id: STRPO_0438
symbol: pbuX
gene_biotype: protein_coding
description:
  Xanthine permease; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173.


ensembl_gene_id: STRPO_0439
symbol: xpt
gene_biotype: protein_coding
description:
  Xanthine phosphoribosyltransferase; Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis.


ensembl_gene_id: STRPO_0441
symbol: guaC
gene_biotype: protein_coding
description:
  GMP reductase; Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides; Belongs to the IMPDH/GMPR family. GuaC type 2 subfamily.


ensembl_gene_id: STRPO_0442
symbol: opuCC_1
gene_biotype: protein_coding
description:
  ABC transporter, quaternary amine uptake transporter family, substrate-binding protein; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069.


ensembl_gene_id: STRPO_0444
symbol: EGJ27857.1
gene_biotype: protein_coding
description:
  Cof-like hydrolase; Identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484.


ensembl_gene_id: STRPO_0446
symbol: sdh
gene_biotype: protein_coding
description:
  Serine 3-dehydrogenase; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: STRPO_0447
symbol: pta
gene_biotype: protein_coding
description:
  Phosphate acetyltransferase; Identified by match to protein family HMM PF01515; match to protein family HMM TIGR00651.


ensembl_gene_id: STRPO_0448
symbol: rluD_2
gene_biotype: protein_coding
description:
  Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: STRPO_0449
symbol: ppnK
gene_biotype: protein_coding
description:
  NAD(+)/NADH kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.


ensembl_gene_id: STRPO_0452
symbol: prs_1
gene_biotype: protein_coding
description:
  Ribose-phosphate diphosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.


ensembl_gene_id: STRPO_0455
symbol: rex
gene_biotype: protein_coding
description:
  Putative redox-sensing transcriptional repressor rex; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.


ensembl_gene_id: STRPO_0456
symbol: radC
gene_biotype: protein_coding
description:
  DNA repair protein RadC; Identified by match to protein family HMM PF04002; match to protein family HMM TIGR00608; Belongs to the UPF0758 family.


ensembl_gene_id: STRPO_0459
symbol: EGJ28064.1
gene_biotype: protein_coding
description:
  Transporter, auxin efflux carrier family protein; Identified by match to protein family HMM PF03547.


ensembl_gene_id: STRPO_0462
symbol: rob
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF02311.


ensembl_gene_id: STRPO_0463
symbol: clcA
gene_biotype: protein_coding
description:
  Chloride transporter, ClC family; Identified by match to protein family HMM PF00654; match to protein family HMM PF02080.


ensembl_gene_id: STRPO_0465
symbol: maeB
gene_biotype: protein_coding
description:
  NAD-dependent malic enzyme; Identified by match to protein family HMM PF00390; match to protein family HMM PF03949.


ensembl_gene_id: STRPO_0466
symbol: malP
gene_biotype: protein_coding
description:
  Citrate carrier protein, CCS family; Identified by match to protein family HMM PF03390; match to protein family HMM TIGR00783.


ensembl_gene_id: STRPO_0468
symbol: dcuR
gene_biotype: protein_coding
description:
  Putative transcriptional regulatory protein DcuR; Identified by match to protein family HMM PF00072.


ensembl_gene_id: STRPO_0469
symbol: potD
gene_biotype: protein_coding
description:
  Putative spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein PotD; identified by match to protein family HMM PF01547.


ensembl_gene_id: STRPO_0470
symbol: potC
gene_biotype: protein_coding
description:
  Putative spermidine/putrescine ABC transporter, permease protein PotC; Identified by match to protein family HMM PF00528.


ensembl_gene_id: STRPO_0472
symbol: potA_1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.


ensembl_gene_id: STRPO_0474
symbol: folK
gene_biotype: protein_coding
description:
  2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase; Identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498.


ensembl_gene_id: STRPO_0475
symbol: folB
gene_biotype: protein_coding
description:
  Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.


ensembl_gene_id: STRPO_0476
symbol: folP
gene_biotype: protein_coding
description:
  Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.


ensembl_gene_id: STRPO_0477
symbol: folE
gene_biotype: protein_coding
description:
  GTP cyclohydrolase I; Identified by match to protein family HMM PF01227; match to protein family HMM TIGR00063.


ensembl_gene_id: STRPO_0478
symbol: folC
gene_biotype: protein_coding
description:
  Bifunctional protein FolC; Identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499; Belongs to the folylpolyglutamate synthase family.


ensembl_gene_id: STRPO_0479
symbol: thrB
gene_biotype: protein_coding
description:
  Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.


ensembl_gene_id: STRPO_0480
symbol: hom
gene_biotype: protein_coding
description:
  Homoserine dehydrogenase; Identified by match to protein family HMM PF00742; match to protein family HMM PF01842; match to protein family HMM PF03447.


ensembl_gene_id: STRPO_0484
symbol: msbA
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.


ensembl_gene_id: STRPO_0485
symbol: EGJ27392.1
gene_biotype: protein_coding
description:
  Conserved hypothetical integral membrane protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.


ensembl_gene_id: STRPO_0489
symbol: hasB
gene_biotype: protein_coding
description:
  Nucleotide sugar dehydrogenase; Identified by match to protein family HMM PF00984; match to protein family HMM PF01210; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026.


ensembl_gene_id: STRPO_0490
symbol: EGJ27775.1
gene_biotype: protein_coding
description:
  AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550.


ensembl_gene_id: STRPO_0497
symbol: EGJ26575.1
gene_biotype: protein_coding
description:
  Putative shikimate dehydrogenase; Identified by match to protein family HMM PF01488; match to protein family HMM PF08501.


ensembl_gene_id: STRPO_0498
symbol: EGJ26928.1
gene_biotype: protein_coding
description:
  DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381; match to protein family HMM TIGR01716.


ensembl_gene_id: STRPO_0499
symbol: rplL
gene_biotype: protein_coding
description:
  Ribosomal protein L7/L12; Identified by match to protein family HMM PF00542; match to protein family HMM TIGR00855.


ensembl_gene_id: STRPO_0500
symbol: rplJ
gene_biotype: protein_coding
description:
  Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.


ensembl_gene_id: STRPO_0502
symbol: clpC_1
gene_biotype: protein_coding
description:
  Negative regulator of genetic competence ClpC/MecB; Identified by match to protein family HMM PF00004; match to protein family HMM PF07724; match to protein family HMM PF07728; Belongs to the ClpA/ClpB family.


ensembl_gene_id: STRPO_0504
symbol: ysxC
gene_biotype: protein_coding
description:
  Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.


ensembl_gene_id: STRPO_0505
symbol: clpX
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.


ensembl_gene_id: STRPO_0507
symbol: folA
gene_biotype: protein_coding
description:
  Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.


ensembl_gene_id: STRPO_0508
symbol: thyA
gene_biotype: protein_coding
description:
  Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis.


ensembl_gene_id: STRPO_0509
symbol: mvaS
gene_biotype: protein_coding
description:
  hydroxymethylglutaryl-CoA synthase; Identified by match to protein family HMM PF01154; match to protein family HMM PF08540; match to protein family HMM TIGR01835.


ensembl_gene_id: STRPO_0510
symbol: mvaA
gene_biotype: protein_coding
description:
  hydroxymethylglutaryl-CoA reductase, degradative; Identified by match to protein family HMM TIGR00532; Belongs to the HMG-CoA reductase family.


ensembl_gene_id: STRPO_0511
symbol: fni
gene_biotype: protein_coding
description:
  Isopentenyl-diphosphate delta-isomerase, type 2; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).


ensembl_gene_id: STRPO_0512
symbol: mvaK2
gene_biotype: protein_coding
description:
  Phosphomevalonate kinase; Identified by match to protein family HMM PF00288; match to protein family HMM PF08544; match to protein family HMM TIGR01220.


ensembl_gene_id: STRPO_0513
symbol: mvaD
gene_biotype: protein_coding
description:
  Diphosphomevalonate decarboxylase; Identified by match to protein family HMM PF00288; match to protein family HMM PF08544; match to protein family HMM TIGR01240.


ensembl_gene_id: STRPO_0514
symbol: mvk
gene_biotype: protein_coding
description:
  Mevalonate kinase; Identified by match to protein family HMM PF00288; match to protein family HMM PF08544; match to protein family HMM TIGR00549.


ensembl_gene_id: STRPO_0517
symbol: yhcR_1
gene_biotype: protein_coding
description:
  LPXTG-motif cell wall anchor domain protein; Identified by match to protein family HMM PF00149; match to protein family HMM PF00746; match to protein family HMM PF02872; match to protein family HMM TIGR01167; Belongs to the 5'-nucleotidase family.


ensembl_gene_id: STRPO_0518
symbol: def_1
gene_biotype: protein_coding
description:
  Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins; Belongs to the polypeptide deformylase family.


ensembl_gene_id: STRPO_0519
symbol: gdhA
gene_biotype: protein_coding
description:
  NAD(P)-specific glutamate dehydrogenase; Identified by match to protein family HMM PF00208; match to protein family HMM PF02812; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.


ensembl_gene_id: STRPO_0521
symbol: cca
gene_biotype: protein_coding
description:
  Putative tRNA adenylyltransferase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate.


ensembl_gene_id: STRPO_0522
symbol: degV_1
gene_biotype: protein_coding
description:
  EDD domain protein, DegV family; Identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762.


ensembl_gene_id: STRPO_0527
symbol: fruA
gene_biotype: protein_coding
description:
  PTS system protein fructose-specific EIIABC component; Identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427.


ensembl_gene_id: STRPO_0528
symbol: pfkB
gene_biotype: protein_coding
description:
  1-phosphofructokinase; Identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168; match to protein family HMM TIGR03828; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.


ensembl_gene_id: STRPO_0529
symbol: lacR_1
gene_biotype: protein_coding
description:
  Putative HTH-type transcriptional regulator IolR; Identified by match to protein family HMM PF00455; match to protein family HMM PF08220.


ensembl_gene_id: STRPO_0530
symbol: apbA
gene_biotype: protein_coding
description:
  2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.


ensembl_gene_id: STRPO_0532
symbol: yumC
gene_biotype: protein_coding
description:
  Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992.


ensembl_gene_id: STRPO_0533
symbol: trmD
gene_biotype: protein_coding
description:
  tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.


ensembl_gene_id: STRPO_0534
symbol: rimM
gene_biotype: protein_coding
description:
  16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.


ensembl_gene_id: STRPO_0535
symbol: EGJ27676.1
gene_biotype: protein_coding
description:
  LPXTG-motif cell wall anchor domain protein; Identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167.


ensembl_gene_id: STRPO_0537
symbol: rpsP
gene_biotype: protein_coding
description:
  Ribosomal protein S16; Identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family.


ensembl_gene_id: STRPO_0539
symbol: macB_2
gene_biotype: protein_coding
description:
  Putative macrolide export ATP-binding/permease protein MacB; Identified by match to protein family HMM PF02687.


ensembl_gene_id: STRPO_0542
symbol: pyrP
gene_biotype: protein_coding
description:
  Uracil permease; Identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801.


ensembl_gene_id: STRPO_0543
symbol: pyrR
gene_biotype: protein_coding
description:
  Pyrimidine operon regulatory protein/uracil phosphoribosyltransferase PyrR; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant; Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrR subfamily.


ensembl_gene_id: STRPO_0546
symbol: lspA
gene_biotype: protein_coding
description:
  Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.


ensembl_gene_id: STRPO_0548
symbol: rpmA
gene_biotype: protein_coding
description:
  Ribosomal protein L27; Identified by match to protein family HMM PF01016; match to protein family HMM TIGR00062; Belongs to the bacterial ribosomal protein bL27 family.


ensembl_gene_id: STRPO_0550
symbol: rplU
gene_biotype: protein_coding
description:
  Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.


ensembl_gene_id: STRPO_0553
symbol: thiI
gene_biotype: protein_coding
description:
  Thiamine biosynthesis/tRNA modification protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.


ensembl_gene_id: STRPO_0554
symbol: iscS_1
gene_biotype: protein_coding
description:
  Putative cysteine desulfurase; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212.


ensembl_gene_id: STRPO_0556
symbol: gor
gene_biotype: protein_coding
description:
  Glutathione-disulfide reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01421.


ensembl_gene_id: STRPO_0558
symbol: aroC
gene_biotype: protein_coding
description:
  Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.


ensembl_gene_id: STRPO_0559
symbol: aroD_1
gene_biotype: protein_coding
description:
  3-dehydroquinate dehydratase, type I; Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis- dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3-dehydroshikimate. Belongs to the type-I 3-dehydroquinase family.


ensembl_gene_id: STRPO_0561
symbol: ltaS
gene_biotype: protein_coding
description:
  Glycerol phosphate lipoteichoic acid synthase 2; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00884.


ensembl_gene_id: STRPO_0563
symbol: rplT
gene_biotype: protein_coding
description:
  Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.


ensembl_gene_id: STRPO_0564
symbol: rpmI
gene_biotype: protein_coding
description:
  Ribosomal protein L35; Identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; Belongs to the bacterial ribosomal protein bL35 family.


ensembl_gene_id: STRPO_0565
symbol: infC
gene_biotype: protein_coding
description:
  Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.


ensembl_gene_id: STRPO_0567
symbol: cmk
gene_biotype: protein_coding
description:
  Cytidylate kinase; Identified by match to protein family HMM PF02224; match to protein family HMM TIGR00017.


ensembl_gene_id: STRPO_0571
symbol: pepT
gene_biotype: protein_coding
description:
  Peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.


ensembl_gene_id: STRPO_0572
symbol: lytC
gene_biotype: protein_coding
description:
  N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01520; match to protein family HMM PF07538.


ensembl_gene_id: STRPO_0575
symbol: EGJ28106.1
gene_biotype: protein_coding
description:
  Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943; match to protein family HMM PF03023.


ensembl_gene_id: STRPO_0579
symbol: EGJ26633.1
gene_biotype: protein_coding
description:
  NAD dependent epimerase/dehydratase family protein; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993.


ensembl_gene_id: STRPO_0580
symbol: EGJ26997.1
gene_biotype: protein_coding
description:
  Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Identified by match to protein family HMM PF01128.


ensembl_gene_id: STRPO_0587
symbol: rfbD
gene_biotype: protein_coding
description:
  dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.


ensembl_gene_id: STRPO_0589
symbol: rpoD
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.


ensembl_gene_id: STRPO_0590
symbol: dnaG
gene_biotype: protein_coding
description:
  DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.


ensembl_gene_id: STRPO_0591
symbol: mscL
gene_biotype: protein_coding
description:
  Large conductance mechanosensitive channel protein; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.


ensembl_gene_id: STRPO_0592
symbol: rpsU
gene_biotype: protein_coding
description:
  Ribosomal protein S21; Identified by match to protein family HMM PF01165; match to protein family HMM TIGR00030; Belongs to the bacterial ribosomal protein bS21 family.


ensembl_gene_id: STRPO_0597
symbol: pheT
gene_biotype: protein_coding
description:
  phenylalanine--tRNA ligase, beta subunit; Identified by match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.


ensembl_gene_id: STRPO_0598
symbol: paiA_2
gene_biotype: protein_coding
description:
  Putative protease synthase and sporulation negative regulatory protein PAI 1; Identified by match to protein family HMM PF00583.


ensembl_gene_id: STRPO_0599
symbol: pheS
gene_biotype: protein_coding
description:
  phenylalanine--tRNA ligase, alpha subunit; Identified by match to protein family HMM PF01409; match to protein family HMM PF02912; match to protein family HMM TIGR00468; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.


ensembl_gene_id: STRPO_0602
symbol: murA_1
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.


ensembl_gene_id: STRPO_0604
symbol: atpC
gene_biotype: protein_coding
description:
  ATP synthase F1, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.


ensembl_gene_id: STRPO_0605
symbol: atpD
gene_biotype: protein_coding
description:
  ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.


ensembl_gene_id: STRPO_0606
symbol: atpG
gene_biotype: protein_coding
description:
  ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.


ensembl_gene_id: STRPO_0607
symbol: atpA
gene_biotype: protein_coding
description:
  ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.


ensembl_gene_id: STRPO_0608
symbol: atpH
gene_biotype: protein_coding
description:
  ATP synthase F1, delta subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: STRPO_0609
symbol: atpF
gene_biotype: protein_coding
description:
  ATP synthase F0, B subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.


ensembl_gene_id: STRPO_0610
symbol: atpB
gene_biotype: protein_coding
description:
  ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.


ensembl_gene_id: STRPO_0611
symbol: atpE
gene_biotype: protein_coding
description:
  ATP synthase subunit C; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: STRPO_0613
symbol: glgD
gene_biotype: protein_coding
description:
  Glucose-1-phosphate adenylyltransferase, GlgD subunit; Identified by match to protein family HMM TIGR02092.


ensembl_gene_id: STRPO_0614
symbol: glgC
gene_biotype: protein_coding
description:
  Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.


ensembl_gene_id: STRPO_0615
symbol: glgB
gene_biotype: protein_coding
description:
  1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.


ensembl_gene_id: STRPO_0616
symbol: pulA
gene_biotype: protein_coding
description:
  Pullulanase, type I; Identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02104; Belongs to the glycosyl hydrolase 13 family.


ensembl_gene_id: STRPO_0618
symbol: ligA
gene_biotype: protein_coding
description:
  DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily.


ensembl_gene_id: STRPO_0621
symbol: eno
gene_biotype: protein_coding
description:
  Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.


ensembl_gene_id: STRPO_0624
symbol: serB
gene_biotype: protein_coding
description:
  Phosphoserine phosphatase SerB; Identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488.


ensembl_gene_id: STRPO_0625
symbol: ezrA
gene_biotype: protein_coding
description:
  Septation ring formation regulator EzrA; Negative regulator of FtsZ ring formation; modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization; Belongs to the EzrA family.


ensembl_gene_id: STRPO_0626
symbol: gyrB
gene_biotype: protein_coding
description:
  DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: STRPO_0628
symbol: rodA
gene_biotype: protein_coding
description:
  Cell cycle protein, FtsW/RodA/SpoVE family; Identified by match to protein family HMM PF01098; Belongs to the SEDS family.


ensembl_gene_id: STRPO_0631
symbol: rplS
gene_biotype: protein_coding
description:
  Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.


ensembl_gene_id: STRPO_0633
symbol: aroH
gene_biotype: protein_coding
description:
  Chorismate mutase; Identified by match to protein family HMM PF01817; match to protein family HMM TIGR01805.


ensembl_gene_id: STRPO_0634
symbol: EGJ27745.1
gene_biotype: protein_coding
description:
  Flavodoxin; Identified by match to protein family HMM PF00258; match to protein family HMM PF07972; match to protein family HMM TIGR01753.


ensembl_gene_id: STRPO_0635
symbol: yghU
gene_biotype: protein_coding
description:
  Glutathione S-transferase, C-terminal domain protein; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798; Belongs to the GST superfamily.


ensembl_gene_id: STRPO_0637
symbol: nrnA
gene_biotype: protein_coding
description:
  DHHA1 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272.


ensembl_gene_id: STRPO_0638
symbol: rpmE
gene_biotype: protein_coding
description:
  Ribosomal protein L31; Identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105.


ensembl_gene_id: STRPO_0640
symbol: manZ-2
gene_biotype: protein_coding
description:
  PTS system protein mannose/fructose/sorbose family IID component; Identified by match to protein family HMM PF03613.


ensembl_gene_id: STRPO_0641
symbol: manY-2
gene_biotype: protein_coding
description:
  PTS system protein sorbose-specific iic component; Identified by match to protein family HMM PF03609.


ensembl_gene_id: STRPO_0642
symbol: levE
gene_biotype: protein_coding
description:
  PTS system protein sorbose subfamily IIB component; Identified by match to protein family HMM PF03830.


ensembl_gene_id: STRPO_0643
symbol: frlR
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392; match to protein family HMM PF07702.


ensembl_gene_id: STRPO_0644
symbol: lacD
gene_biotype: protein_coding
description:
  Tagatose-bisphosphate aldolase; Identified by match to protein family HMM PF01791; match to protein family HMM TIGR01232.


ensembl_gene_id: STRPO_0647
symbol: adcA_1
gene_biotype: protein_coding
description:
  ABC transporter, substrate-binding protein; Identified by match to protein family HMM PF01297; match to protein family HMM PF09223; Belongs to the bacterial solute-binding protein 9 family.


ensembl_gene_id: STRPO_0651
symbol: EGJ26736.1
gene_biotype: protein_coding
description:
  Hypothetical protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.


ensembl_gene_id: STRPO_0654
symbol: asnS
gene_biotype: protein_coding
description:
  asparagine--tRNA ligase; Identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00457.


ensembl_gene_id: STRPO_0659
symbol: ftsX
gene_biotype: protein_coding
description:
  Putative cell division protein FtsX; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.


ensembl_gene_id: STRPO_0660
symbol: ftsE
gene_biotype: protein_coding
description:
  Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.


ensembl_gene_id: STRPO_0661
symbol: prfB
gene_biotype: protein_coding
description:
  Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.


ensembl_gene_id: STRPO_0662
symbol: queG
gene_biotype: protein_coding
description:
  Putative iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF08331; match to protein family HMM TIGR00276.


ensembl_gene_id: STRPO_0664
symbol: EGJ27209.1
gene_biotype: protein_coding
description:
  HAD hydrolase, family IA, variant 3; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549.


ensembl_gene_id: STRPO_0665
symbol: EGJ28194.1
gene_biotype: protein_coding
description:
  Putative phosphoesterase; Identified by match to protein family HMM PF00149; match to protein family HMM TIGR03729.


ensembl_gene_id: STRPO_0667
symbol: ugpQ_2
gene_biotype: protein_coding
description:
  Putative glycerophosphodiester phosphodiesterase; Identified by match to protein family HMM PF03009.


ensembl_gene_id: STRPO_0669
symbol: EGJ27368.1
gene_biotype: protein_coding
description:
  Putative potassium/sodium efflux P-type ATPase, fungal-type; Identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494.


ensembl_gene_id: STRPO_0673
symbol: EGJ26564.1
gene_biotype: protein_coding
description:
  Cof-like hydrolase; Identified by match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484.


ensembl_gene_id: STRPO_0676
symbol: tpiA_1
gene_biotype: protein_coding
description:
  Triose-phosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.


ensembl_gene_id: STRPO_0677
symbol: tuf
gene_biotype: protein_coding
description:
  Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.


ensembl_gene_id: STRPO_0678
symbol: ftsW
gene_biotype: protein_coding
description:
  Putative stage V sporulation protein E; Identified by match to protein family HMM PF01098; Belongs to the SEDS family.


ensembl_gene_id: STRPO_0679
symbol: ppc
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family.


ensembl_gene_id: STRPO_0680
symbol: pepF_1
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181.


ensembl_gene_id: STRPO_0685
symbol: thiT
gene_biotype: protein_coding
description:
  Putative proton-coupled thiamine transporter YuaJ; Identified by match to protein family HMM PF09515; match to protein family HMM TIGR02357.


ensembl_gene_id: STRPO_0686
symbol: ybaK
gene_biotype: protein_coding
description:
  Putative YbaK/EbsC protein; Identified by match to protein family HMM PF04073; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.


ensembl_gene_id: STRPO_0698
symbol: lysS
gene_biotype: protein_coding
description:
  lysine--tRNA ligase; Identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499; Belongs to the class-II aminoacyl-tRNA synthetase family.


ensembl_gene_id: STRPO_0700
symbol: hutG
gene_biotype: protein_coding
description:
  Formimidoylglutamase; Catalyzes the conversion of N-formimidoyl-L-glutamate to L- glutamate and formamide; Belongs to the arginase family.


ensembl_gene_id: STRPO_0701
symbol: hutH
gene_biotype: protein_coding
description:
  Histidine ammonia-lyase; Identified by match to protein family HMM PF00221; match to protein family HMM TIGR01225.


ensembl_gene_id: STRPO_0705
symbol: fchA
gene_biotype: protein_coding
description:
  Putative methenyltetrahydrofolate cyclohydrolase; Identified by match to protein family HMM PF04961.


ensembl_gene_id: STRPO_0706
symbol: ftcD
gene_biotype: protein_coding
description:
  Glutamate formimidoyltransferase; Identified by match to protein family HMM PF02971; match to protein family HMM PF07837; match to protein family HMM TIGR02024.


ensembl_gene_id: STRPO_0707
symbol: hutU
gene_biotype: protein_coding
description:
  Urocanate hydratase; Identified by match to protein family HMM PF01175; match to protein family HMM TIGR01228.


ensembl_gene_id: STRPO_0708
symbol: hutI
gene_biotype: protein_coding
description:
  Imidazolonepropionase; Identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR01224.


ensembl_gene_id: STRPO_0719
symbol: lgt
gene_biotype: protein_coding
description:
  Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.


ensembl_gene_id: STRPO_0720
symbol: hprK
gene_biotype: protein_coding
description:
  HPr(Ser) kinase/phosphatase; Catalyzes the ATP- as well as the pyrophosphate-dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK/P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P-Ser-HPr). The two antagonistic activities of HprK/P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable car [...]


ensembl_gene_id: STRPO_0722
symbol: EGJ27811.1
gene_biotype: protein_coding
description:
  Metallopeptidase, SprT family; Identified by match to protein family HMM PF03926; Belongs to the SprT family.


ensembl_gene_id: STRPO_0723
symbol: yhgF
gene_biotype: protein_coding
description:
  Tex-like protein N-terminal domain protein; Identified by match to protein family HMM PF00575; match to protein family HMM PF09371.


ensembl_gene_id: STRPO_0729
symbol: pstS_1
gene_biotype: protein_coding
description:
  Putative Phosphate-binding protein PstS 2; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.


ensembl_gene_id: STRPO_0730
symbol: EGJ26685.1
gene_biotype: protein_coding
description:
  Putative lipoprotein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.


ensembl_gene_id: STRPO_0732
symbol: phoP
gene_biotype: protein_coding
description:
  Alkaline phosphatase synthesis transcriptional regulatory protein PhoP; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.


ensembl_gene_id: STRPO_0742
symbol: ftsY
gene_biotype: protein_coding
description:
  Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).


ensembl_gene_id: STRPO_0743
symbol: yidA_4
gene_biotype: protein_coding
description:
  Cof-like hydrolase; Identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; overlaps another CDS with the same product name.


ensembl_gene_id: STRPO_0745
symbol: smc
gene_biotype: protein_coding
description:
  Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.


ensembl_gene_id: STRPO_0746
symbol: rnc
gene_biotype: protein_coding
description:
  Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.


ensembl_gene_id: STRPO_0748
symbol: yycG
gene_biotype: protein_coding
description:
  PAS domain S-box protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.


ensembl_gene_id: STRPO_0749
symbol: walR
gene_biotype: protein_coding
description:
  Transcriptional regulatory protein WalR; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.


ensembl_gene_id: STRPO_0753
symbol: yecS_1
gene_biotype: protein_coding
description:
  Putative glutamate/glutamine/aspartate/asparagine transport system permease protein BztB; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.


ensembl_gene_id: STRPO_0755
symbol: glpF2
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861; Belongs to the MIP/aquaporin (TC 1.A.8) family.


ensembl_gene_id: STRPO_0756
symbol: dhaM
gene_biotype: protein_coding
description:
  Dihydroxyacetone kinase, phosphotransfer subunit; Identified by match to protein family HMM PF03610; match to protein family HMM TIGR02364.


ensembl_gene_id: STRPO_0757
symbol: dhaL
gene_biotype: protein_coding
description:
  Dihydroxyacetone kinase, L subunit; Identified by match to protein family HMM PF02734; match to protein family HMM TIGR02365.


ensembl_gene_id: STRPO_0758
symbol: dhaK
gene_biotype: protein_coding
description:
  Dihydroxyacetone kinase, DhaK subunit; Identified by match to protein family HMM PF02733; match to protein family HMM TIGR02363.


ensembl_gene_id: STRPO_0760
symbol: dhaQ
gene_biotype: protein_coding
description:
  Putative dihydroxyacetone kinase DhaK1b subunit; Identified by match to protein family HMM PF02733; match to protein family HMM TIGR02362.


ensembl_gene_id: STRPO_0764
symbol: thrS
gene_biotype: protein_coding
description:
  threonine--tRNA ligase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).


ensembl_gene_id: STRPO_0769
symbol: ccpA
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF00356; match to protein family HMM PF00532; match to protein family HMM TIGR01481.


ensembl_gene_id: STRPO_0770
symbol: pepQ
gene_biotype: protein_coding
description:
  Xaa-Pro dipeptidase; Identified by match to protein family HMM PF00557; match to protein family HMM PF01321; Belongs to the peptidase M24B family.


ensembl_gene_id: STRPO_0772
symbol: celD
gene_biotype: protein_coding
description:
  Cellobiose PTS family porter IIC component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.


ensembl_gene_id: STRPO_0775
symbol: licR_3
gene_biotype: protein_coding
description:
  PRD domain protein; Identified by match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279.


ensembl_gene_id: STRPO_0777
symbol: celA
gene_biotype: protein_coding
description:
  6-phospho-beta-glucosidase; Identified by match to protein family HMM PF00232; Belongs to the glycosyl hydrolase 1 family.


ensembl_gene_id: STRPO_0780
symbol: smpB
gene_biotype: protein_coding
description:
  SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]


ensembl_gene_id: STRPO_0781
symbol: rnr
gene_biotype: protein_coding
description:
  Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.


ensembl_gene_id: STRPO_0782
symbol: secG
gene_biotype: protein_coding
description:
  Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.


ensembl_gene_id: STRPO_0785
symbol: coaE
gene_biotype: protein_coding
description:
  dephospho-CoA kinase; Identified by match to protein family HMM PF01121; match to protein family HMM TIGR00152.


ensembl_gene_id: STRPO_0786
symbol: mutM
gene_biotype: protein_coding
description:
  DNA-formamidopyrimidine glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.


ensembl_gene_id: STRPO_0794
symbol: era
gene_biotype: protein_coding
description:
  Ribosome biogenesis GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.


ensembl_gene_id: STRPO_0796
symbol: ybeY
gene_biotype: protein_coding
description:
  Translation metalloprotein YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.


ensembl_gene_id: STRPO_0802
symbol: msrA
gene_biotype: protein_coding
description:
  Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.


ensembl_gene_id: STRPO_0804
symbol: frr
gene_biotype: protein_coding
description:
  Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.


ensembl_gene_id: STRPO_0806
symbol: rplA
gene_biotype: protein_coding
description:
  Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.


ensembl_gene_id: STRPO_0807
symbol: rplK
gene_biotype: protein_coding
description:
  Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.


ensembl_gene_id: STRPO_0810
symbol: spoIIIE
gene_biotype: protein_coding
description:
  Stage III sporulation protein E; Identified by match to protein family HMM PF01580; match to protein family HMM PF09397; Belongs to the FtsK/SpoIIIE/SftA family.


ensembl_gene_id: STRPO_0811
symbol: cypB
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.


ensembl_gene_id: STRPO_0813
symbol: mtsB
gene_biotype: protein_coding
description:
  Putative manganese transport system ATP-binding protein MntA; Identified by match to protein family HMM PF00005.


ensembl_gene_id: STRPO_0814
symbol: mtsA
gene_biotype: protein_coding
description:
  Metal ABC transporter substrate-binding lipoprotein; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.


ensembl_gene_id: STRPO_0815
symbol: ideR
gene_biotype: protein_coding
description:
  Iron dependent repressor, N-terminal DNA binding domain protein; Identified by match to protein family HMM PF01047; match to protein family HMM PF01325; match to protein family HMM PF02742; match to protein family HMM PF04023.


ensembl_gene_id: STRPO_0816
symbol: mtnN
gene_biotype: protein_coding
description:
  MTA/SAH nucleosidase; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily.


ensembl_gene_id: STRPO_0819
symbol: glmU
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain.


ensembl_gene_id: STRPO_0820
symbol: ydgJ
gene_biotype: protein_coding
description:
  Oxidoreductase, NAD-binding domain protein; Identified by match to protein family HMM PF01118; match to protein family HMM PF01408.


ensembl_gene_id: STRPO_0822
symbol: fabG_2
gene_biotype: protein_coding
description:
  Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106.


ensembl_gene_id: STRPO_0826
symbol: brnQ
gene_biotype: protein_coding
description:
  Branched-chain amino acid transport system II carrier protein; Component of the transport system for branched-chain amino acids.


ensembl_gene_id: STRPO_0827
symbol: mprF
gene_biotype: protein_coding
description:
  Putative membrane protein; Identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331.


ensembl_gene_id: STRPO_0828
symbol: metG
gene_biotype: protein_coding
description:
  methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.


ensembl_gene_id: STRPO_0831
symbol: scpA_4
gene_biotype: protein_coding
description:
  Putative c5a peptidase; Identified by match to protein family HMM PF00082; match to protein family HMM PF02225; match to protein family HMM PF04650; match to protein family HMM PF06280; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168.


ensembl_gene_id: STRPO_0832
symbol: lctO
gene_biotype: protein_coding
description:
  L-lactate oxidase; Identified by match to protein family HMM PF01070; match to protein family HMM TIGR02708.


ensembl_gene_id: STRPO_0833
symbol: glcA
gene_biotype: protein_coding
description:
  Transporter, lactate permease family; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.


ensembl_gene_id: STRPO_0834
symbol: xth
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease III; Identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633.


ensembl_gene_id: STRPO_0837
symbol: EGJ27526.1
gene_biotype: protein_coding
description:
  Sugar-binding domain protein; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532.


ensembl_gene_id: STRPO_0840
symbol: spxA_2-2
gene_biotype: protein_coding
description:
  Transcriptional regulator, Spx/MgsR family; Identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617; Belongs to the ArsC family.


ensembl_gene_id: STRPO_0841
symbol: ogt
gene_biotype: protein_coding
description:
  6-O-methylguanine DNA methyltransferase, DNA binding domain protein; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.


ensembl_gene_id: STRPO_0842
symbol: pdxB
gene_biotype: protein_coding
description:
  4-phosphoerythronate dehydrogenase; Identified by match to protein family HMM PF00389; match to protein family HMM PF01842; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: STRPO_0844
symbol: serC
gene_biotype: protein_coding
description:
  Phosphoserine transaminase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.


ensembl_gene_id: STRPO_0847
symbol: rsmI
gene_biotype: protein_coding
description:
  S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.


ensembl_gene_id: STRPO_0848
symbol: yabA
gene_biotype: protein_coding
description:
  Hypothetical protein; Involved in initiation control of chromosome replication. Belongs to the YabA family.


ensembl_gene_id: STRPO_0851
symbol: tmk
gene_biotype: protein_coding
description:
  dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.


ensembl_gene_id: STRPO_0852
symbol: EGJ27865.1
gene_biotype: protein_coding
description:
  CBS domain protein; Identified by match to protein family HMM PF00571; match to protein family HMM PF01842.


ensembl_gene_id: STRPO_0853
symbol: livF
gene_biotype: protein_coding
description:
  High-affinity branched-chain amino acid ABC transporter, ATP-binding protein LivF; Identified by match to protein family HMM PF00005.


ensembl_gene_id: STRPO_0860
symbol: clpP_2
gene_biotype: protein_coding
description:
  ATP-dependent Clp endopeptidase, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.


ensembl_gene_id: STRPO_0861
symbol: upp
gene_biotype: protein_coding
description:
  Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.


ensembl_gene_id: STRPO_0863
symbol: murE
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase; Catalyzes the addition of L-lysine to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan; Belongs to the MurCDEF family. MurE subfamily.


ensembl_gene_id: STRPO_0864
symbol: fhuC
gene_biotype: protein_coding
description:
  Ferrichrome ABC transporter, ATP-binding protein FhuC; Identified by match to protein family HMM PF00005.


ensembl_gene_id: STRPO_0866
symbol: EGJ28181.1
gene_biotype: protein_coding
description:
  Putative iron(3+)-hydroxamate import system permease protein FhuB; Identified by match to protein family HMM PF01032.


ensembl_gene_id: STRPO_0867
symbol: EGJ27118.1
gene_biotype: protein_coding
description:
  Iron chelate uptake ABC transporter, FeCT family, permease protein; Identified by match to protein family HMM PF01032.


ensembl_gene_id: STRPO_0870
symbol: ppaC
gene_biotype: protein_coding
description:
  Inorganic pyrophosphatase PpaC; Identified by match to protein family HMM PF01368; match to protein family HMM PF02833.


ensembl_gene_id: STRPO_0871
symbol: pflA
gene_biotype: protein_coding
description:
  Pyruvate formate-lyase 1-activating enzyme; Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine; Belongs to the organic radical-activating enzymes family.


ensembl_gene_id: STRPO_0872
symbol: EGJ27936.1
gene_biotype: protein_coding
description:
  Putative phage tail component, N-terminal domain protein; Identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471.


ensembl_gene_id: STRPO_0873
symbol: EGJ27085.1
gene_biotype: protein_coding
description:
  Putative rRNA methylase; Identified by match to protein family HMM PF06962; match to protein family HMM PF08241.


ensembl_gene_id: STRPO_0875
symbol: ybhF
gene_biotype: protein_coding
description:
  Putative bacitracin ABC transporter, ATP-binding protein BcrA; Identified by match to protein family HMM PF00005.


ensembl_gene_id: STRPO_0876
symbol: EGJ27164.1
gene_biotype: protein_coding
description:
  Radical SAM protein, TIGR01212 family; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212.


ensembl_gene_id: STRPO_0878
symbol: ribU
gene_biotype: protein_coding
description:
  Hypothetical protein; Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins; Belongs to the prokaryotic riboflavin transporter (P-RFT) (TC 2.A.87) family.


ensembl_gene_id: STRPO_0881
symbol: EGJ27640.1
gene_biotype: protein_coding
description:
  Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.


ensembl_gene_id: STRPO_0882
symbol: rafA
gene_biotype: protein_coding
description:
  Alpha-galactosidase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF02065.


ensembl_gene_id: STRPO_0887
symbol: trmL
gene_biotype: protein_coding
description:
  RNA methyltransferase, TrmH family, group 2; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.


ensembl_gene_id: STRPO_0888
symbol: yidD
gene_biotype: protein_coding
description:
  Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.


ensembl_gene_id: STRPO_0889
symbol: rluB
gene_biotype: protein_coding
description:
  Pseudouridine synthase B, ribosomal large subunit; Identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: STRPO_0890
symbol: scpB
gene_biotype: protein_coding
description:
  Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: STRPO_0891
symbol: scpA_6
gene_biotype: protein_coding
description:
  ScpA/B protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.


ensembl_gene_id: STRPO_0892
symbol: xerD
gene_biotype: protein_coding
description:
  Site-specific tyrosine recombinase XerD-like protein; Putative tyrosine recombinase. Not involved in the cutting and rejoining of the recombining DNA molecules on dif(SL) site. Belongs to the 'phage' integrase family. XerD-like subfamily.


ensembl_gene_id: STRPO_0895
symbol: rdgB
gene_biotype: protein_coding
description:
  Non-canonical purine NTP pyrophosphatase RdgB; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.


ensembl_gene_id: STRPO_0898
symbol: ybhL
gene_biotype: protein_coding
description:
  Putative membrane protein; Identified by match to protein family HMM PF01027; Belongs to the BI1 family.


ensembl_gene_id: STRPO_0900
symbol: yfjD
gene_biotype: protein_coding
description:
  RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: STRPO_0902
symbol: misCB_2
gene_biotype: protein_coding
description:
  Membrane protein insertase, YidC/Oxa1 family; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins; Belongs to the OXA1/ALB3/YidC family. Type 2 subfamily.


ensembl_gene_id: STRPO_0903
symbol: greA
gene_biotype: protein_coding
description:
  Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.


ensembl_gene_id: STRPO_0904
symbol: yceG
gene_biotype: protein_coding
description:
  YceG family protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.


ensembl_gene_id: STRPO_0908
symbol: EGJ27530.1
gene_biotype: protein_coding
description:
  SNF2 family N-terminal domain protein; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF08455.


ensembl_gene_id: STRPO_0909
symbol: der
gene_biotype: protein_coding
description:
  Ribosome biogenesis GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.


ensembl_gene_id: STRPO_0911
symbol: dnaB-2
gene_biotype: protein_coding
description:
  Replication initiation and membrane attachment protein, DnaB/DnaD family; Identified by match to protein family HMM PF07261.


ensembl_gene_id: STRPO_0912
symbol: nrdR
gene_biotype: protein_coding
description:
  Transcriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.


ensembl_gene_id: STRPO_0913
symbol: csrS
gene_biotype: protein_coding
description:
  ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.


ensembl_gene_id: STRPO_0914
symbol: arlR
gene_biotype: protein_coding
description:
  Response regulator ArlR; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.


ensembl_gene_id: STRPO_0916
symbol: htpX
gene_biotype: protein_coding
description:
  Peptidase, M48 family; Identified by match to protein family HMM PF01435; Belongs to the peptidase M48B family.


ensembl_gene_id: STRPO_0918
symbol: rmsG
gene_biotype: protein_coding
description:
  16S rRNA (guanine(527)-N(7))-methyltransferase; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.


ensembl_gene_id: STRPO_0921
symbol: metI
gene_biotype: protein_coding
description:
  D-methionine transport system permease protein MetI; Identified by match to protein family HMM PF00528.


ensembl_gene_id: STRPO_0922
symbol: atmD
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Methionine importer (TC 3.A.1.24) family.


ensembl_gene_id: STRPO_0923
symbol: dapE_2
gene_biotype: protein_coding
description:
  Peptidase dimerization domain protein; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687.


ensembl_gene_id: STRPO_0924
symbol: metQ
gene_biotype: protein_coding
description:
  Putative D-methionine-binding lipoprotein MetQ; Identified by match to protein family HMM PF03180; Belongs to the nlpA lipoprotein family.


ensembl_gene_id: STRPO_0926
symbol: yeeN
gene_biotype: protein_coding
description:
  DNA-binding regulatory protein, YebC/PmpR family; Identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033.


ensembl_gene_id: STRPO_0929
symbol: EGJ28136.1
gene_biotype: protein_coding
description:
  TipAS antibiotic-recognition domain protein; Identified by match to protein family HMM PF00376; match to protein family HMM PF07739.


ensembl_gene_id: STRPO_0930
symbol: tmcAL
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of elongator tRNA(Met), using acetate and ATP as substrates. First activates an acetate ion to form acetyladenylate (Ac- AMP) and then transfers the acetyl group to tRNA to form ac(4)C34.


ensembl_gene_id: STRPO_0933
symbol: ybeB
gene_biotype: protein_coding
description:
  Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.


ensembl_gene_id: STRPO_0934
symbol: EGJ26458.1
gene_biotype: protein_coding
description:
  Hydrolase, HD family; Identified by match to protein family HMM PF01966; match to protein family HMM TIGR00488.


ensembl_gene_id: STRPO_0935
symbol: nadD
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).


ensembl_gene_id: STRPO_0936
symbol: EGJ27158.1
gene_biotype: protein_coding
description:
  RNA-binding protein, YhbY family; Identified by match to protein family HMM PF01985; match to protein family HMM TIGR00253.


ensembl_gene_id: STRPO_0937
symbol: yqeH
gene_biotype: protein_coding
description:
  Ribosome biogenesis GTPase YqeH; Identified by match to protein family HMM PF01926; match to protein family HMM TIGR03597.


ensembl_gene_id: STRPO_0938
symbol: EGJ28294.1
gene_biotype: protein_coding
description:
  HAD phosphatase, family IIIA; Identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01668.


ensembl_gene_id: STRPO_0946
symbol: raiA
gene_biotype: protein_coding
description:
  Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.


ensembl_gene_id: STRPO_0950
symbol: cysK
gene_biotype: protein_coding
description:
  Cysteine synthase A; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; Belongs to the cysteine synthase/cystathionine beta- synthase family.


ensembl_gene_id: STRPO_0952
symbol: EGJ28283.1
gene_biotype: protein_coding
description:
  Cof-like hydrolase; Identified by match to protein family HMM PF00160; match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484.


ensembl_gene_id: STRPO_0953
symbol: vraR
gene_biotype: protein_coding
description:
  Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281.


ensembl_gene_id: STRPO_0954
symbol: vraS
gene_biotype: protein_coding
description:
  Histidine kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730.


ensembl_gene_id: STRPO_0956
symbol: stk1
gene_biotype: protein_coding
description:
  Putative serine/threonine-protein kinase PrkC; Identified by match to protein family HMM PF00069; match to protein family HMM PF01163; match to protein family HMM PF03793.


ensembl_gene_id: STRPO_0958
symbol: sun
gene_biotype: protein_coding
description:
  Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.


ensembl_gene_id: STRPO_0959
symbol: fmt
gene_biotype: protein_coding
description:
  methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.


ensembl_gene_id: STRPO_0960
symbol: priA
gene_biotype: protein_coding
description:
  Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.


ensembl_gene_id: STRPO_0961
symbol: rpoZ
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.


ensembl_gene_id: STRPO_0964
symbol: luxS
gene_biotype: protein_coding
description:
  S-ribosylhomocysteinase LuxS; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family.


ensembl_gene_id: STRPO_0965
symbol: mapZ
gene_biotype: protein_coding
description:
  Hypothetical protein; Early cell division protein that marks the future cell division site and supports proper FtsZ ring positioning.


ensembl_gene_id: STRPO_0968
symbol: gpsB
gene_biotype: protein_coding
description:
  DivIVA domain protein; Divisome component that associates with the complex late in its assembly, after the Z-ring is formed, and is dependent on DivIC and PBP2B for its recruitment to the divisome. Together with EzrA, is a key component of the system that regulates PBP1 localization during cell cycle progression. Its main role could be the removal of PBP1 from the cell pole after pole maturation is completed. Also contributes to the recruitment of PBP1 to the division complex. Not essential for septum formation.


ensembl_gene_id: STRPO_0970
symbol: recU
gene_biotype: protein_coding
description:
  Recombination protein U; Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation; Belongs to the RecU family.


ensembl_gene_id: STRPO_0971
symbol: ponA
gene_biotype: protein_coding
description:
  Penicillin-binding protein 1A; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.


ensembl_gene_id: STRPO_0973
symbol: nadE
gene_biotype: protein_coding
description:
  NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family.


ensembl_gene_id: STRPO_0974
symbol: pncB
gene_biotype: protein_coding
description:
  Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.


ensembl_gene_id: STRPO_0976
symbol: trxB
gene_biotype: protein_coding
description:
  Thioredoxin-disulfide reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292.


ensembl_gene_id: STRPO_0981
symbol: cshB
gene_biotype: protein_coding
description:
  DEAD-box ATP-dependent RNA helicase CshB; Probable DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures.


ensembl_gene_id: STRPO_0982
symbol: mraY
gene_biotype: protein_coding
description:
  phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.


ensembl_gene_id: STRPO_0983
symbol: pbpX
gene_biotype: protein_coding
description:
  Penicillin-binding protein 2X; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793.


ensembl_gene_id: STRPO_0985
symbol: mraW
gene_biotype: protein_coding
description:
  S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.


ensembl_gene_id: STRPO_0986
symbol: proA
gene_biotype: protein_coding
description:
  Glutamate-5-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.


ensembl_gene_id: STRPO_0987
symbol: proB
gene_biotype: protein_coding
description:
  Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.


ensembl_gene_id: STRPO_0988
symbol: EGJ26602.1
gene_biotype: protein_coding
description:
  Putative membrane protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.


ensembl_gene_id: STRPO_0991
symbol: tkt
gene_biotype: protein_coding
description:
  Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.


ensembl_gene_id: STRPO_0992
symbol: fsa
gene_biotype: protein_coding
description:
  Fructose-6-phosphate aldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.


ensembl_gene_id: STRPO_0995
symbol: glpF1
gene_biotype: protein_coding
description:
  Putative glycerol facilitator-aquaporin; Identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861; Belongs to the MIP/aquaporin (TC 1.A.8) family.


ensembl_gene_id: STRPO_0997
symbol: glpK
gene_biotype: protein_coding
description:
  Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.


ensembl_gene_id: STRPO_0999
symbol: glyS
gene_biotype: protein_coding
description:
  glycine--tRNA ligase, beta subunit; Identified by match to protein family HMM PF02092; match to protein family HMM PF05746; match to protein family HMM TIGR00211.


ensembl_gene_id: STRPO_1000
symbol: glyQ
gene_biotype: protein_coding
description:
  glycine--tRNA ligase, alpha subunit; Identified by match to protein family HMM PF02091; match to protein family HMM TIGR00388.


ensembl_gene_id: STRPO_1001
symbol: EGJ27256.1
gene_biotype: protein_coding
description:
  Isoprenylcysteine carboxyl methyltransferase family protein; Identified by match to protein family HMM PF04140.


ensembl_gene_id: STRPO_1005
symbol: chbC
gene_biotype: protein_coding
description:
  PTS system protein, lactose/cellobiose family IIC component; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.


ensembl_gene_id: STRPO_1006
symbol: nagA
gene_biotype: protein_coding
description:
  N-acetylglucosamine-6-phosphate deacetylase; Identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221.


ensembl_gene_id: STRPO_1012
symbol: lacC_2
gene_biotype: protein_coding
description:
  Tagatose-6-phosphate kinase; Identified by match to protein family HMM PF00294; match to protein family HMM TIGR01231; match to protein family HMM TIGR03168; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.


ensembl_gene_id: STRPO_1015
symbol: gatC_4
gene_biotype: protein_coding
description:
  PTS system protein Galactitol-specific IIC component; Identified by match to protein family HMM PF03611.


ensembl_gene_id: STRPO_1020
symbol: copA
gene_biotype: protein_coding
description:
  Copper-exporting ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.


ensembl_gene_id: STRPO_1021
symbol: copY
gene_biotype: protein_coding
description:
  Copper transport repressor, CopY/TcrY family; Identified by match to protein family HMM PF03965; match to protein family HMM TIGR02698.


ensembl_gene_id: STRPO_1022
symbol: rbfA
gene_biotype: protein_coding
description:
  Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.


ensembl_gene_id: STRPO_1023
symbol: infB
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.


ensembl_gene_id: STRPO_1026
symbol: nusA
gene_biotype: protein_coding
description:
  Transcription termination factor NusA; Participates in both transcription termination and antitermination.


ensembl_gene_id: STRPO_1027
symbol: rimP
gene_biotype: protein_coding
description:
  Hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.


ensembl_gene_id: STRPO_1029
symbol: trmB
gene_biotype: protein_coding
description:
  tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.


ensembl_gene_id: STRPO_1038
symbol: ydiB
gene_biotype: protein_coding
description:
  Hydrolase, P-loop family; Identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150.


ensembl_gene_id: STRPO_1041
symbol: manX
gene_biotype: protein_coding
description:
  PTS system protein mannose-specific EIIAB component; Identified by match to protein family HMM PF03610; match to protein family HMM PF03830.


ensembl_gene_id: STRPO_1043
symbol: manZ
gene_biotype: protein_coding
description:
  Mannose permease IID component; Identified by match to protein family HMM PF03613; match to protein family HMM TIGR00828.


ensembl_gene_id: STRPO_1047
symbol: serS
gene_biotype: protein_coding
description:
  serine--tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).


ensembl_gene_id: STRPO_1048
symbol: accA
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.


ensembl_gene_id: STRPO_1049
symbol: accD
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.


ensembl_gene_id: STRPO_1050
symbol: accC
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, biotin carboxylase subunit; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: STRPO_1051
symbol: fabZ
gene_biotype: protein_coding
description:
  Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs.


ensembl_gene_id: STRPO_1052
symbol: fabE
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.


ensembl_gene_id: STRPO_1053
symbol: fabF
gene_biotype: protein_coding
description:
  Beta-ketoacyl-acyl-carrier-protein synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.


ensembl_gene_id: STRPO_1054
symbol: fabG
gene_biotype: protein_coding
description:
  3-oxoacyl-[acyl-carrier-protein] reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: STRPO_1055
symbol: fabD
gene_biotype: protein_coding
description:
  [acyl-carrier-protein] S-malonyltransferase; Identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128.


ensembl_gene_id: STRPO_1056
symbol: fabK
gene_biotype: protein_coding
description:
  Putative enoyl-[acyl-carrier-protein] reductase II; Identified by match to protein family HMM PF03060; match to protein family HMM TIGR03151.


ensembl_gene_id: STRPO_1057
symbol: acpB
gene_biotype: protein_coding
description:
  Putative acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.


ensembl_gene_id: STRPO_1058
symbol: fabH
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl carrier protein) synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.


ensembl_gene_id: STRPO_1059
symbol: marR_1
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047; match to protein family HMM PF03965.


ensembl_gene_id: STRPO_1061
symbol: dnaJ
gene_biotype: protein_coding
description:
  Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]


ensembl_gene_id: STRPO_1063
symbol: grpE
gene_biotype: protein_coding
description:
  Co-chaperone GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-depend [...]


ensembl_gene_id: STRPO_1064
symbol: hrcA
gene_biotype: protein_coding
description:
  Heat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons.


ensembl_gene_id: STRPO_1073
symbol: gatB
gene_biotype: protein_coding
description:
  aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.


ensembl_gene_id: STRPO_1074
symbol: gatA
gene_biotype: protein_coding
description:
  aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).


ensembl_gene_id: STRPO_1075
symbol: gatC
gene_biotype: protein_coding
description:
  aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.


ensembl_gene_id: STRPO_1076
symbol: ppdK
gene_biotype: protein_coding
description:
  Pyruvate, phosphate dikinase; Identified by match to protein family HMM PF00391; match to protein family HMM PF01326; match to protein family HMM PF02896; match to protein family HMM TIGR01828; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: STRPO_1077
symbol: yqfL
gene_biotype: protein_coding
description:
  Hypothetical protein; Bifunctional serine/threonine kinase and phosphorylase involved in the regulation of the pyruvate, phosphate dikinase (PPDK) by catalyzing its phosphorylation/dephosphorylation.


ensembl_gene_id: STRPO_1078
symbol: ccpN
gene_biotype: protein_coding
description:
  Transcriptional repressor CcpN; Identified by match to protein family HMM PF00571; match to protein family HMM PF08279.


ensembl_gene_id: STRPO_1079
symbol: paaH
gene_biotype: protein_coding
description:
  Putative 3-hydroxybutyryl-CoA dehydrogenase; Identified by match to protein family HMM PF00725; match to protein family HMM PF01210; match to protein family HMM PF02737.


ensembl_gene_id: STRPO_1083
symbol: codY
gene_biotype: protein_coding
description:
  GTP-sensing transcriptional pleiotropic repressor CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; Belongs to the CodY family.


ensembl_gene_id: STRPO_1084
symbol: EGJ27812.1
gene_biotype: protein_coding
description:
  Putative aminotransferase AlaT; Identified by match to protein family HMM PF00155; match to protein family HMM PF01212.


ensembl_gene_id: STRPO_1089
symbol: recG
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.


ensembl_gene_id: STRPO_1090
symbol: alr
gene_biotype: protein_coding
description:
  Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.


ensembl_gene_id: STRPO_1091
symbol: acpS
gene_biotype: protein_coding
description:
  Holo-[acyl-carrier-protein] synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.


ensembl_gene_id: STRPO_1092
symbol: secA
gene_biotype: protein_coding
description:
  Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family.


ensembl_gene_id: STRPO_1093
symbol: manA
gene_biotype: protein_coding
description:
  Mannose-6-phosphate isomerase, class I; Identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218; Belongs to the mannose-6-phosphate isomerase type 1 family.


ensembl_gene_id: STRPO_1094
symbol: gmuE
gene_biotype: protein_coding
description:
  Fructokinase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00480.


ensembl_gene_id: STRPO_1095
symbol: EGJ27130.1
gene_biotype: protein_coding
description:
  Fructokinase domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.


ensembl_gene_id: STRPO_1096
symbol: sacX
gene_biotype: protein_coding
description:
  PTS system protein sucrose-specific IIBC component; Identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR01996.


ensembl_gene_id: STRPO_1097
symbol: scrB
gene_biotype: protein_coding
description:
  Sucrose-6-phosphate hydrolase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.


ensembl_gene_id: STRPO_1099
symbol: nusB
gene_biotype: protein_coding
description:
  Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.


ensembl_gene_id: STRPO_1101
symbol: efp
gene_biotype: protein_coding
description:
  Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.


ensembl_gene_id: STRPO_1103
symbol: EGJ27049.1
gene_biotype: protein_coding
description:
  Putative Xaa-Pro dipeptidase; Identified by match to protein family HMM PF00557; match to protein family HMM PF01321; Belongs to the peptidase M24B family.


ensembl_gene_id: STRPO_1106
symbol: uvrA
gene_biotype: protein_coding
description:
  Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.


ensembl_gene_id: STRPO_1109
symbol: rpsR
gene_biotype: protein_coding
description:
  Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.


ensembl_gene_id: STRPO_1110
symbol: ssb_1
gene_biotype: protein_coding
description:
  Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.


ensembl_gene_id: STRPO_1113
symbol: trxA
gene_biotype: protein_coding
description:
  Thioredoxin; Identified by match to protein family HMM PF00085; match to protein family HMM PF08534; match to protein family HMM TIGR01068; Belongs to the thioredoxin family.


ensembl_gene_id: STRPO_1114
symbol: mutS2
gene_biotype: protein_coding
description:
  MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.


ensembl_gene_id: STRPO_1119
symbol: recD
gene_biotype: protein_coding
description:
  Helicase, RecD/TraA family; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.


ensembl_gene_id: STRPO_1121
symbol: dinB
gene_biotype: protein_coding
description:
  Putative DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.


ensembl_gene_id: STRPO_1122
symbol: pflB
gene_biotype: protein_coding
description:
  Formate C-acetyltransferase; Identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255.


ensembl_gene_id: STRPO_1127
symbol: gla
gene_biotype: protein_coding
description:
  Glycerol facilitator-aquaporin; Identified by match to protein family HMM PF00230; Belongs to the MIP/aquaporin (TC 1.A.8) family.


ensembl_gene_id: STRPO_1128
symbol: pepX
gene_biotype: protein_coding
description:
  Xaa-Pro dipeptidyl-peptidase; Removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline; Belongs to the peptidase S15 family.


ensembl_gene_id: STRPO_1133
symbol: EGJ27267.1
gene_biotype: protein_coding
description:
  methylmalonyl-CoA carboxyltransferase 5S subunit; Identified by match to protein family HMM PF00682; match to protein family HMM PF02436.


ensembl_gene_id: STRPO_1134
symbol: citX
gene_biotype: protein_coding
description:
  holo-ACP synthase CitX; Identified by match to protein family HMM PF03802; match to protein family HMM TIGR03124.


ensembl_gene_id: STRPO_1135
symbol: citF_1
gene_biotype: protein_coding
description:
  Citrate lyase, alpha subunit; Identified by match to protein family HMM PF04223; match to protein family HMM TIGR01584.


ensembl_gene_id: STRPO_1136
symbol: citE
gene_biotype: protein_coding
description:
  Citrate (pro-3S)-lyase, beta subunit; Identified by match to protein family HMM PF03328; match to protein family HMM TIGR01588; Belongs to the HpcH/HpaI aldolase family.


ensembl_gene_id: STRPO_1139
symbol: oadB
gene_biotype: protein_coding
description:
  Sodium ion-translocating decarboxylase, beta subunit; Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD).


ensembl_gene_id: STRPO_1142
symbol: citN
gene_biotype: protein_coding
description:
  Citrate transporter; Identified by match to protein family HMM PF03600; match to protein family HMM TIGR00784.


ensembl_gene_id: STRPO_1143
symbol: ydfH
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.


ensembl_gene_id: STRPO_1144
symbol: citG
gene_biotype: protein_coding
description:
  triphosphoribosyl-dephospho-CoA synthase CitG; Identified by match to protein family HMM PF01874; match to protein family HMM TIGR03125.


ensembl_gene_id: STRPO_1147
symbol: citE_1
gene_biotype: protein_coding
description:
  Putative citrate (pro-3S)-lyase, beta subunit; Identified by match to protein family HMM PF03328; Belongs to the HpcH/HpaI aldolase family.


ensembl_gene_id: STRPO_1149
symbol: EGJ26996.1
gene_biotype: protein_coding
description:
  LysR substrate binding domain protein; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466.


ensembl_gene_id: STRPO_1150
symbol: citC
gene_biotype: protein_coding
description:
  [citrate (pro-3S)-lyase] ligase; Acetylation of prosthetic group (2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A) of the gamma subunit of citrate lyase.


ensembl_gene_id: STRPO_1154
symbol: EGJ27795.1
gene_biotype: protein_coding
description:
  Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.


ensembl_gene_id: STRPO_1155
symbol: EGJ27588.1
gene_biotype: protein_coding
description:
  Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative.


ensembl_gene_id: STRPO_1157
symbol: EGJ27030.1
gene_biotype: protein_coding
description:
  Phenazine biosynthesis protein, PhzF family; Identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654.


ensembl_gene_id: STRPO_1170
symbol: EGJ27404.1
gene_biotype: protein_coding
description:
  DNA-binding protein, YbaB/EbfC family; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.


ensembl_gene_id: STRPO_1172
symbol: EGJ27330.1
gene_biotype: protein_coding
description:
  Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF04394.


ensembl_gene_id: STRPO_1173
symbol: EGJ27961.1
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF00890; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275.


ensembl_gene_id: STRPO_1174
symbol: rpsN_1
gene_biotype: protein_coding
description:
  Ribosomal protein S14p/S29e; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.


ensembl_gene_id: STRPO_1177
symbol: gcp
gene_biotype: protein_coding
description:
  Putative glycoprotease GCP; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.


ensembl_gene_id: STRPO_1178
symbol: rimI
gene_biotype: protein_coding
description:
  Ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18.


ensembl_gene_id: STRPO_1179
symbol: yeaZ
gene_biotype: protein_coding
description:
  Universal bacterial protein YeaZ; Identified by match to protein family HMM PF00814; match to protein family HMM TIGR03725.


ensembl_gene_id: STRPO_1181
symbol: rnjA
gene_biotype: protein_coding
description:
  Ribonuclease J 1; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.


ensembl_gene_id: STRPO_1182
symbol: oppF_1
gene_biotype: protein_coding
description:
  Oligopeptide ABC transporter, ATP-binding protein OppF; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; Belongs to the ABC transporter superfamily.


ensembl_gene_id: STRPO_1183
symbol: oppD
gene_biotype: protein_coding
description:
  Oligopeptide ABC transporter, ATP-binding protein OppD; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727.


ensembl_gene_id: STRPO_1184
symbol: dppC
gene_biotype: protein_coding
description:
  Putative oligopeptide ABC transporter, permease protein OppC; Identified by match to protein family HMM PF00528.


ensembl_gene_id: STRPO_1185
symbol: oppB
gene_biotype: protein_coding
description:
  Putative oligopeptide ABC transporter, permease protein AppB; Identified by match to protein family HMM PF00528.


ensembl_gene_id: STRPO_1186
symbol: dppA_1
gene_biotype: protein_coding
description:
  ABC transporter, substrate-binding protein, family 5; Identified by match to protein family HMM PF00496.


ensembl_gene_id: STRPO_1187
symbol: glnA
gene_biotype: protein_coding
description:
  Glutamine synthetase, type I; Identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; Belongs to the glutamine synthetase family.


ensembl_gene_id: STRPO_1190
symbol: pgk
gene_biotype: protein_coding
description:
  Phosphoglycerate kinase; Identified by match to protein family HMM PF00162; Belongs to the phosphoglycerate kinase family.


ensembl_gene_id: STRPO_1191
symbol: hel
gene_biotype: protein_coding
description:
  5'-nucleotidase, lipoprotein e(P4) family; Identified by match to protein family HMM PF03767; match to protein family HMM TIGR01533.


ensembl_gene_id: STRPO_1192
symbol: gap
gene_biotype: protein_coding
description:
  Glyceraldehyde-3-phosphate dehydrogenase, type I; Identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.


ensembl_gene_id: STRPO_1193
symbol: fusA
gene_biotype: protein_coding
description:
  Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]


ensembl_gene_id: STRPO_1194
symbol: rpsG
gene_biotype: protein_coding
description:
  Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.


ensembl_gene_id: STRPO_1195
symbol: rpsL
gene_biotype: protein_coding
description:
  Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.


ensembl_gene_id: STRPO_1197
symbol: purR
gene_biotype: protein_coding
description:
  Pur operon repressor PurR; Identified by match to protein family HMM PF00156; match to protein family HMM PF09182; match to protein family HMM TIGR01743.


ensembl_gene_id: STRPO_1198
symbol: cbf
gene_biotype: protein_coding
description:
  HD domain protein; Identified by match to protein family HMM PF01336; match to protein family HMM PF01966.


ensembl_gene_id: STRPO_1200
symbol: thiN
gene_biotype: protein_coding
description:
  Thiamine diphosphokinase; Identified by match to protein family HMM PF04263; match to protein family HMM PF04265; match to protein family HMM TIGR01378.


ensembl_gene_id: STRPO_1201
symbol: rpe
gene_biotype: protein_coding
description:
  Ribulose-phosphate 3-epimerase; Identified by match to protein family HMM PF00215; match to protein family HMM PF00834; match to protein family HMM TIGR01163; Belongs to the ribulose-phosphate 3-epimerase family.


ensembl_gene_id: STRPO_1202
symbol: rsgA
gene_biotype: protein_coding
description:
  Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.


ensembl_gene_id: STRPO_1203
symbol: emrB
gene_biotype: protein_coding
description:
  Drug resistance MFS transporter, drug:H+ antiporter-2 family; Identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; Belongs to the major facilitator superfamily.


ensembl_gene_id: STRPO_1205
symbol: EGJ27838.1
gene_biotype: protein_coding
description:
  Integrase core domain protein; Identified by match to protein family HMM PF00665; overlaps another CDS with the same product name.


ensembl_gene_id: STRPO_1206
symbol: EGJ26493.1
gene_biotype: protein_coding
description:
  IS861, transposase OrfA; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.


ensembl_gene_id: STRPO_1208
symbol: EGJ26557.1
gene_biotype: protein_coding
description:
  C4-dicarboxylate anaerobic carrier; Identified by match to protein family HMM PF03600; match to protein family HMM PF03606.


ensembl_gene_id: STRPO_1209
symbol: arcC_1
gene_biotype: protein_coding
description:
  Carbamate kinase; Identified by match to protein family HMM PF00696; match to protein family HMM TIGR00746; Belongs to the carbamate kinase family.


ensembl_gene_id: STRPO_1210
symbol: argF_1
gene_biotype: protein_coding
description:
  Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.


ensembl_gene_id: STRPO_1212
symbol: glnG
gene_biotype: protein_coding
description:
  YcbB domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF08664.


ensembl_gene_id: STRPO_1213
symbol: ksgA
gene_biotype: protein_coding
description:
  Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.


ensembl_gene_id: STRPO_1214
symbol: rnmV
gene_biotype: protein_coding
description:
  Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step.


ensembl_gene_id: STRPO_1215
symbol: ycfH
gene_biotype: protein_coding
description:
  Hydrolase, TatD family; Identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010.


ensembl_gene_id: STRPO_1222
symbol: nanE
gene_biotype: protein_coding
description:
  Putative N-acetylmannosamine-6-phosphate epimerase; Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N- acetylglucosamine-6-phosphate (GlcNAc-6-P).


ensembl_gene_id: STRPO_1223
symbol: rpmH
gene_biotype: protein_coding
description:
  Ribosomal protein L34; Identified by match to protein family HMM PF00468; match to protein family HMM TIGR01030; Belongs to the bacterial ribosomal protein bL34 family.


ensembl_gene_id: STRPO_1225
symbol: misCB_1
gene_biotype: protein_coding
description:
  Putative stage III sporulation protein J; Identified by match to protein family HMM PF02096; match to protein family HMM TIGR03592.


ensembl_gene_id: STRPO_1226
symbol: rnpA
gene_biotype: protein_coding
description:
  Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.


ensembl_gene_id: STRPO_1227
symbol: fasA
gene_biotype: protein_coding
description:
  LytTr DNA-binding domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.


ensembl_gene_id: STRPO_1230
symbol: gltX
gene_biotype: protein_coding
description:
  glutamate--tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.


ensembl_gene_id: STRPO_1232
symbol: radA
gene_biotype: protein_coding
description:
  DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.


ensembl_gene_id: STRPO_1233
symbol: dut
gene_biotype: protein_coding
description:
  dUTP diphosphatase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA.


ensembl_gene_id: STRPO_1237
symbol: queH
gene_biotype: protein_coding
description:
  Hypothetical protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr).


ensembl_gene_id: STRPO_1241
symbol: gpsA
gene_biotype: protein_coding
description:
  Glycerol-3-phosphate dehydrogenase [NAD(P)+]; Identified by match to protein family HMM PF01210; match to protein family HMM PF02558; match to protein family HMM PF03721; match to protein family HMM PF03807; match to protein family HMM PF07479; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: STRPO_1242
symbol: galU
gene_biotype: protein_coding
description:
  UTP--glucose-1-phosphate uridylyltransferase; Identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099.


ensembl_gene_id: STRPO_1244
symbol: yqgN
gene_biotype: protein_coding
description:
  5-formyltetrahydrofolate cyclo-ligase; Identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.


ensembl_gene_id: STRPO_1245
symbol: EGJ26544.1
gene_biotype: protein_coding
description:
  Putative PTS system protein, glucitol/sorbitol-specific, IIA component; Identified by match to protein family HMM PF03829.


ensembl_gene_id: STRPO_1246
symbol: srlE
gene_biotype: protein_coding
description:
  PTS system protein, glucitol/sorbitol-specific, IIBC component; Identified by match to protein family HMM PF03612; match to protein family HMM PF07663; match to protein family HMM TIGR00825.


ensembl_gene_id: STRPO_1247
symbol: srlA
gene_biotype: protein_coding
description:
  PTS system protein, glucitol/sorbitol-specific, IIC component; Identified by match to protein family HMM PF03608; match to protein family HMM TIGR00821.


ensembl_gene_id: STRPO_1249
symbol: licR_2
gene_biotype: protein_coding
description:
  HTH domain protein; Identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279.


ensembl_gene_id: STRPO_1250
symbol: sorD
gene_biotype: protein_coding
description:
  Putative L-iditol 2-dehydrogenase; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: STRPO_1251
symbol: pgi
gene_biotype: protein_coding
description:
  Glucose-6-phosphate isomerase; Identified by match to protein family HMM PF00342; Belongs to the GPI family.


ensembl_gene_id: STRPO_1253
symbol: tadA
gene_biotype: protein_coding
description:
  Cytidine and deoxycytidylate deaminase zinc-binding region; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: STRPO_1257
symbol: tgt
gene_biotype: protein_coding
description:
  tRNA-guanine transglycosylase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the [...]


ensembl_gene_id: STRPO_1260
symbol: perR
gene_biotype: protein_coding
description:
  Peroxide operon regulator; Identified by match to protein family HMM PF01475; Belongs to the Fur family.


ensembl_gene_id: STRPO_1262
symbol: polA_2
gene_biotype: protein_coding
description:
  DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.


ensembl_gene_id: STRPO_1264
symbol: proV
gene_biotype: protein_coding
description:
  Glycine betaine/L-proline ABC transporter, ATP-binding protein ProV; Identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186.


ensembl_gene_id: STRPO_1267
symbol: licR_1
gene_biotype: protein_coding
description:
  PRD domain protein; Identified by match to protein family HMM PF00874; match to protein family HMM PF08279.


ensembl_gene_id: STRPO_1269
symbol: lyx
gene_biotype: protein_coding
description:
  Carbohydrate kinase, FGGY family protein; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782; Belongs to the FGGY kinase family.


ensembl_gene_id: STRPO_1272
symbol: EGJ27127.1
gene_biotype: protein_coding
description:
  Putative glyoxylate reductase; Identified by match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.


ensembl_gene_id: STRPO_1276
symbol: ulaD_2
gene_biotype: protein_coding
description:
  Putative hexulose-6-phosphate isomerase; Identified by match to protein family HMM PF01261; match to protein family HMM TIGR00542.


ensembl_gene_id: STRPO_1278
symbol: ulaC_1
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate-dependent sugar PTS family porter, EIIA 2; Identified by match to protein family HMM PF00359.


ensembl_gene_id: STRPO_1279
symbol: ulaB_1
gene_biotype: protein_coding
description:
  PTS system protein, Lactose/Cellobiose specific IIB subunit; Identified by match to protein family HMM PF02302.


ensembl_gene_id: STRPO_1281
symbol: leuS
gene_biotype: protein_coding
description:
  leucine--tRNA ligase; Identified by match to protein family HMM PF00133; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00396; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: STRPO_1282
symbol: EGJ27340.1
gene_biotype: protein_coding
description:
  Gram-positive signal peptide protein, YSIRK family; Identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168.


ensembl_gene_id: STRPO_1283
symbol: nusG
gene_biotype: protein_coding
description:
  Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination.


ensembl_gene_id: STRPO_1284
symbol: secE
gene_biotype: protein_coding
description:
  Preprotein translocase, SecE subunit; Identified by match to protein family HMM TIGR00964; Belongs to the SecE/SEC61-gamma family.


ensembl_gene_id: STRPO_1285
symbol: pbp2A
gene_biotype: protein_coding
description:
  Penicillin-binding protein, 1A family; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.


ensembl_gene_id: STRPO_1292
symbol: groL
gene_biotype: protein_coding
description:
  Chaperonin GroL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.


ensembl_gene_id: STRPO_1293
symbol: groS
gene_biotype: protein_coding
description:
  Chaperonin GroS; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.


ensembl_gene_id: STRPO_1294
symbol: clpC_2
gene_biotype: protein_coding
description:
  Negative regulator of genetic competence ClpC/MecB; Identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; Belongs to the ClpA/ClpB family.


ensembl_gene_id: STRPO_1295
symbol: ctsR
gene_biotype: protein_coding
description:
  Transcriptional regulator CtsR; Identified by match to protein family HMM PF05848; Belongs to the CtsR family.


ensembl_gene_id: STRPO_1304
symbol: ahpC
gene_biotype: protein_coding
description:
  Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.


ensembl_gene_id: STRPO_1305
symbol: ahpF
gene_biotype: protein_coding
description:
  Alkyl hydroperoxide reductase, F subunit; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR03140.


ensembl_gene_id: STRPO_1307
symbol: rpsB
gene_biotype: protein_coding
description:
  Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family.


ensembl_gene_id: STRPO_1308
symbol: tsf
gene_biotype: protein_coding
description:
  Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.


ensembl_gene_id: STRPO_1310
symbol: treC
gene_biotype: protein_coding
description:
  Alpha,alpha-phosphotrehalase; Identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403.


ensembl_gene_id: STRPO_1311
symbol: treP
gene_biotype: protein_coding
description:
  PTS system protein trehalose-specific IIBC component; Identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR01992.


ensembl_gene_id: STRPO_1312
symbol: treR
gene_biotype: protein_coding
description:
  Trehalose operon repressor; Identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02404.


ensembl_gene_id: STRPO_1313
symbol: EGJ26751.1
gene_biotype: protein_coding
description:
  Glyoxalase family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.


ensembl_gene_id: STRPO_1315
symbol: nrdG
gene_biotype: protein_coding
description:
  Anaerobic ribonucleoside-triphosphate reductase activating protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.


ensembl_gene_id: STRPO_1319
symbol: nrdD
gene_biotype: protein_coding
description:
  Anaerobic ribonucleoside-triphosphate reductase; Identified by match to protein family HMM PF01228; match to protein family HMM PF03477; match to protein family HMM TIGR02487.


ensembl_gene_id: STRPO_1322
symbol: yrrK
gene_biotype: protein_coding
description:
  RNAse H domain protein, YqgF family; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.


ensembl_gene_id: STRPO_1324
symbol: spxA_2
gene_biotype: protein_coding
description:
  Transcriptional regulator Spx; Identified by match to protein family HMM PF03960; Belongs to the ArsC family.


ensembl_gene_id: STRPO_1325
symbol: recA
gene_biotype: protein_coding
description:
  RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.


ensembl_gene_id: STRPO_1326
symbol: cinA
gene_biotype: protein_coding
description:
  Competence/damage-inducible protein CinA N-terminal domain protein; Identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; Belongs to the CinA family.


ensembl_gene_id: STRPO_1328
symbol: ruvA
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.


ensembl_gene_id: STRPO_1330
symbol: mutL
gene_biotype: protein_coding
description:
  DNA mismatch repair protein, C-terminal domain protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.


ensembl_gene_id: STRPO_1332
symbol: EGJ28014.1
gene_biotype: protein_coding
description:
  Gram-positive signal peptide protein, YSIRK family; Identified by match to protein family HMM PF00746; match to protein family HMM PF02986; match to protein family HMM PF07501; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168.


ensembl_gene_id: STRPO_1333
symbol: mutS
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.


ensembl_gene_id: STRPO_1336
symbol: argS
gene_biotype: protein_coding
description:
  arginine--tRNA ligase; Identified by match to protein family HMM PF00750; match to protein family HMM PF03485; match to protein family HMM PF05746; match to protein family HMM TIGR00456.


ensembl_gene_id: STRPO_1340
symbol: aspS
gene_biotype: protein_coding
description:
  aspartate--tRNA ligase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.


ensembl_gene_id: STRPO_1341
symbol: hisS
gene_biotype: protein_coding
description:
  histidine--tRNA ligase; Identified by match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00442.


ensembl_gene_id: STRPO_1342
symbol: rpmF
gene_biotype: protein_coding
description:
  Ribosomal protein L32; Identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031; Belongs to the bacterial ribosomal protein bL32 family.


ensembl_gene_id: STRPO_1343
symbol: rpmG
gene_biotype: protein_coding
description:
  Ribosomal protein L33; Identified by match to protein family HMM PF00471; match to protein family HMM TIGR01023; Belongs to the bacterial ribosomal protein bL33 family.


ensembl_gene_id: STRPO_1352
symbol: EGJ27400.1
gene_biotype: protein_coding
description:
  Putative flagellar protein FliS; Identified by match to protein family HMM TIGR03061; match to protein family HMM TIGR03062.


ensembl_gene_id: STRPO_1355
symbol: rpsD
gene_biotype: protein_coding
description:
  Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.


ensembl_gene_id: STRPO_1357
symbol: dnaB
gene_biotype: protein_coding
description:
  Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.


ensembl_gene_id: STRPO_1359
symbol: EGJ28257.1
gene_biotype: protein_coding
description:
  DHHA1 domain protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family.


ensembl_gene_id: STRPO_1360
symbol: gidA
gene_biotype: protein_coding
description:
  tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.


ensembl_gene_id: STRPO_1362
symbol: marC
gene_biotype: protein_coding
description:
  Membrane protein, MarC family; Identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427.


ensembl_gene_id: STRPO_1363
symbol: trmU
gene_biotype: protein_coding
description:
  tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.


ensembl_gene_id: STRPO_1364
symbol: sdaAB
gene_biotype: protein_coding
description:
  L-serine dehydratase, iron-sulfur-dependent, beta subunit; Identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719; Belongs to the iron-sulfur dependent L-serine dehydratase family.


ensembl_gene_id: STRPO_1365
symbol: sdaAA
gene_biotype: protein_coding
description:
  L-serine dehydratase, iron-sulfur-dependent, alpha subunit; Identified by match to protein family HMM PF03313; match to protein family HMM TIGR00718; Belongs to the iron-sulfur dependent L-serine dehydratase family.


ensembl_gene_id: STRPO_1368
symbol: ecfT_2
gene_biotype: protein_coding
description:
  Cobalt transport protein; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.


ensembl_gene_id: STRPO_1369
symbol: cbiO_1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.


ensembl_gene_id: STRPO_1371
symbol: pgsA
gene_biotype: protein_coding
description:
  CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: STRPO_1373
symbol: EGJ27757.1
gene_biotype: protein_coding
description:
  Peptidase M16 inactive domain protein; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193; overlaps another CDS with the same product name.


ensembl_gene_id: STRPO_1374
symbol: EGJ26603.1
gene_biotype: protein_coding
description:
  Peptidase M16 inactive domain protein; Identified by match to protein family HMM PF05193; overlaps another CDS with the same product name.


ensembl_gene_id: STRPO_1376
symbol: recF
gene_biotype: protein_coding
description:
  DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.


ensembl_gene_id: STRPO_1377
symbol: EGJ27039.1
gene_biotype: protein_coding
description:
  Putative glucose uptake protein GlcU; Identified by match to protein family HMM PF00892; match to protein family HMM PF06800.


ensembl_gene_id: STRPO_1378
symbol: guaB
gene_biotype: protein_coding
description:
  Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.


ensembl_gene_id: STRPO_1379
symbol: trpS
gene_biotype: protein_coding
description:
  tryptophan--tRNA ligase; Identified by match to protein family HMM PF00579; match to protein family HMM TIGR00233; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: STRPO_1387
symbol: rlmH
gene_biotype: protein_coding
description:
  rRNA large subunit m3Psi methyltransferase RlmH; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.


ensembl_gene_id: STRPO_1389
symbol: spo0J
gene_biotype: protein_coding
description:
  Stage 0 sporulation protein J; Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family.


ensembl_gene_id: STRPO_1390
symbol: dnaA
gene_biotype: protein_coding
description:
  Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.


ensembl_gene_id: STRPO_1391
symbol: dnaN
gene_biotype: protein_coding
description:
  DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]


ensembl_gene_id: STRPO_1393
symbol: EGJ26396.1
gene_biotype: protein_coding
description:
  DNA-binding helix-turn-helix protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01381.


ensembl_gene_id: STRPO_1394
symbol: ychF
gene_biotype: protein_coding
description:
  GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.


ensembl_gene_id: STRPO_1395
symbol: pth
gene_biotype: protein_coding
description:
  aminoacyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.


ensembl_gene_id: STRPO_1396
symbol: mfd
gene_biotype: protein_coding
description:
  Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.


ensembl_gene_id: STRPO_1402
symbol: tilS
gene_biotype: protein_coding
description:
  tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine.


ensembl_gene_id: STRPO_1403
symbol: hpt
gene_biotype: protein_coding
description:
  Hypoxanthine phosphoribosyltransferase; Identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203; Belongs to the purine/pyrimidine phosphoribosyltransferase family.


ensembl_gene_id: STRPO_1404
symbol: hflB
gene_biotype: protein_coding
description:
  ATP-dependent metallopeptidase HflB; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family.  In the central section; belongs to the AAA ATPase family.


ensembl_gene_id: STRPO_1433
symbol: plsX
gene_biotype: protein_coding
description:
  Fatty acid/phospholipid synthesis protein PlsX; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.


ensembl_gene_id: STRPO_1436
symbol: EGJ27076.1
gene_biotype: protein_coding
description:
  CHAP domain protein; Identified by match to protein family HMM PF05257; match to protein family HMM PF08460.


ensembl_gene_id: STRPO_1439
symbol: purB
gene_biotype: protein_coding
description:
  Adenylosuccinate lyase; Identified by match to protein family HMM PF00206; match to protein family HMM TIGR00928; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.


ensembl_gene_id: STRPO_1441
symbol: ruvB
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.


ensembl_gene_id: STRPO_1442
symbol: EGJ27979.1
gene_biotype: protein_coding
description:
  Low molecular weight protein-tyrosine-phosphatase PtpA domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.


ensembl_gene_id: STRPO_1443
symbol: yfkJ
gene_biotype: protein_coding
description:
  Putative low molecular weight protein-tyrosine-phosphatase PtpA; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.


ensembl_gene_id: STRPO_1446
symbol: adh
gene_biotype: protein_coding
description:
  Aldehyde-alcohol dehydrogenase 2; Identified by match to protein family HMM PF00465; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.


ensembl_gene_id: STRPO_1447
symbol: thrC
gene_biotype: protein_coding
description:
  Threonine synthase; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR00260.


ensembl_gene_id: STRPO_1449
symbol: rpsJ
gene_biotype: protein_coding
description:
  Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.


ensembl_gene_id: STRPO_1450
symbol: rplC
gene_biotype: protein_coding
description:
  50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.


ensembl_gene_id: STRPO_1452
symbol: rplW
gene_biotype: protein_coding
description:
  Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.


ensembl_gene_id: STRPO_1453
symbol: rplB
gene_biotype: protein_coding
description:
  Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.


ensembl_gene_id: STRPO_1454
symbol: rpsS
gene_biotype: protein_coding
description:
  Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.


ensembl_gene_id: STRPO_1455
symbol: rplV
gene_biotype: protein_coding
description:
  Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.


ensembl_gene_id: STRPO_1456
symbol: rpsC
gene_biotype: protein_coding
description:
  Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.


ensembl_gene_id: STRPO_1457
symbol: rplP
gene_biotype: protein_coding
description:
  Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.


ensembl_gene_id: STRPO_1458
symbol: rpmC
gene_biotype: protein_coding
description:
  Ribosomal protein L29; Identified by match to protein family HMM PF00831; match to protein family HMM TIGR00012; Belongs to the universal ribosomal protein uL29 family.


ensembl_gene_id: STRPO_1459
symbol: rpsQ
gene_biotype: protein_coding
description:
  30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.


ensembl_gene_id: STRPO_1460
symbol: rplN
gene_biotype: protein_coding
description:
  Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.


ensembl_gene_id: STRPO_1461
symbol: rplX
gene_biotype: protein_coding
description:
  Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.


ensembl_gene_id: STRPO_1462
symbol: rplE
gene_biotype: protein_coding
description:
  Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.


ensembl_gene_id: STRPO_1463
symbol: rpsN_2
gene_biotype: protein_coding
description:
  Ribosomal protein S14p/S29e; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.


ensembl_gene_id: STRPO_1464
symbol: rpsH
gene_biotype: protein_coding
description:
  Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.


ensembl_gene_id: STRPO_1465
symbol: rplF
gene_biotype: protein_coding
description:
  Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.


ensembl_gene_id: STRPO_1466
symbol: rplR
gene_biotype: protein_coding
description:
  Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.


ensembl_gene_id: STRPO_1467
symbol: rpsE
gene_biotype: protein_coding
description:
  Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.


ensembl_gene_id: STRPO_1468
symbol: rpmD
gene_biotype: protein_coding
description:
  Ribosomal protein L30; Identified by match to protein family HMM PF00327; match to protein family HMM TIGR01308.


ensembl_gene_id: STRPO_1469
symbol: rplO
gene_biotype: protein_coding
description:
  Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.


ensembl_gene_id: STRPO_1470
symbol: secY
gene_biotype: protein_coding
description:
  Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.


ensembl_gene_id: STRPO_1471
symbol: adk
gene_biotype: protein_coding
description:
  Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.


ensembl_gene_id: STRPO_1472
symbol: infA
gene_biotype: protein_coding
description:
  Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.


ensembl_gene_id: STRPO_1473
symbol: rpsM
gene_biotype: protein_coding
description:
  30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.


ensembl_gene_id: STRPO_1474
symbol: rpsK
gene_biotype: protein_coding
description:
  30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.


ensembl_gene_id: STRPO_1475
symbol: rpoA
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: STRPO_1476
symbol: rplQ
gene_biotype: protein_coding
description:
  Ribosomal protein L17; Identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059.


ensembl_gene_id: STRPO_1493
symbol: EGJ27897.1
gene_biotype: protein_coding
description:
  MazG nucleotide pyrophosphohydrolase domain protein; Identified by match to protein family HMM PF03819.


ensembl_gene_id: STRPO_1496
symbol: EGJ27346.1
gene_biotype: protein_coding
description:
  Pyridoxamine 5'-phosphate oxidase family protein; Identified by match to protein family HMM PF01243.


ensembl_gene_id: STRPO_1498
symbol: dapE_1
gene_biotype: protein_coding
description:
  Peptidase, ArgE/DapE family; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01910.


ensembl_gene_id: STRPO_1499
symbol: adhP
gene_biotype: protein_coding
description:
  Alcohol dehydrogenase, propanol-preferring; Identified by match to protein family HMM PF00107; match to protein family HMM PF08240.


ensembl_gene_id: STRPO_1501
symbol: EGJ27100.1
gene_biotype: protein_coding
description:
  Putative 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Identified by match to protein family HMM PF01040.


ensembl_gene_id: STRPO_1504
symbol: cydB
gene_biotype: protein_coding
description:
  Cytochrome d ubiquinol oxidase, subunit II; Identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203.


ensembl_gene_id: STRPO_1505
symbol: cydD
gene_biotype: protein_coding
description:
  Thiol reductant ABC exporter, CydD subunit; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02857.


ensembl_gene_id: STRPO_1506
symbol: cydC
gene_biotype: protein_coding
description:
  Thiol reductant ABC exporter, CydC subunit; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR02868.


ensembl_gene_id: STRPO_1507
symbol: hepT
gene_biotype: protein_coding
description:
  Polyprenyl synthetase; Identified by match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: STRPO_1508
symbol: ispE
gene_biotype: protein_coding
description:
  4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol; Belongs to the GHMP kinase family. IspE subfamily.


ensembl_gene_id: STRPO_1509
symbol: adcR
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01022; match to protein family HMM PF01047.


ensembl_gene_id: STRPO_1512
symbol: tyrS
gene_biotype: protein_coding
description:
  tyrosine--tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.


ensembl_gene_id: STRPO_1513
symbol: pbp1B
gene_biotype: protein_coding
description:
  Transglycosylase; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912.


ensembl_gene_id: STRPO_1514
symbol: rpoB
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: STRPO_1515
symbol: rpoC
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: STRPO_1518
symbol: EGJ27475.1
gene_biotype: protein_coding
description:
  Type II secretion system protein F domain protein; Identified by match to protein family HMM PF00482.


ensembl_gene_id: STRPO_1522
symbol: EGJ26563.1
gene_biotype: protein_coding
description:
  Prepilin-type cleavage/methylation N-terminal domain protein; Identified by match to protein family HMM TIGR02532.


ensembl_gene_id: STRPO_1525
symbol: ackA
gene_biotype: protein_coding
description:
  Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.


ensembl_gene_id: STRPO_1530
symbol: proC
gene_biotype: protein_coding
description:
  Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.


ensembl_gene_id: STRPO_1531
symbol: pepA
gene_biotype: protein_coding
description:
  Glutamyl aminopeptidase; Identified by match to protein family HMM PF05343; match to protein family HMM TIGR03107.


ensembl_gene_id: STRPO_1534
symbol: pheT_1
gene_biotype: protein_coding
description:
  tRNA binding domain protein; Identified by match to protein family HMM PF01588; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.


ensembl_gene_id: STRPO_1535
symbol: ssb_2
gene_biotype: protein_coding
description:
  Single-stranded DNA-binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621.


ensembl_gene_id: STRPO_1539
symbol: EGJ26909.1
gene_biotype: protein_coding
description:
  Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653.


ensembl_gene_id: STRPO_1542
symbol: dus
gene_biotype: protein_coding
description:
  Putative tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.


ensembl_gene_id: STRPO_1543
symbol: hslO
gene_biotype: protein_coding
description:
  Chaperonin HslO; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress.


ensembl_gene_id: STRPO_1544
symbol: EGJ26597.1
gene_biotype: protein_coding
description:
  M protein trans-acting positive regulator; Identified by match to protein family HMM PF05043; match to protein family HMM PF08270.


ensembl_gene_id: STRPO_1546
symbol: gshAB
gene_biotype: protein_coding
description:
  Glutamate--cysteine ligase/gamma-glutamylcysteine synthetase; Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine; In the N-terminal section; belongs to the glutamate--cysteine ligase type 1 family. Type 2 subfamily.


ensembl_gene_id: STRPO_1549
symbol: purA
gene_biotype: protein_coding
description:
  Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.


ensembl_gene_id: STRPO_1553
symbol: tdcF
gene_biotype: protein_coding
description:
  Putative endoribonuclease L-PSP; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.


ensembl_gene_id: STRPO_1555
symbol: dsdA
gene_biotype: protein_coding
description:
  D-serine ammonia-lyase; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR02035; Belongs to the serine/threonine dehydratase family. DsdA subfamily.


ensembl_gene_id: STRPO_1558
symbol: ntpK
gene_biotype: protein_coding
description:
  V-type sodium ATPase, K subunit; Identified by match to protein family HMM PF00137; Belongs to the V-ATPase proteolipid subunit family.


ensembl_gene_id: STRPO_1562
symbol: ntpA
gene_biotype: protein_coding
description:
  ATP synthase alpha/beta chain, C-terminal domain protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.


ensembl_gene_id: STRPO_1563
symbol: ntpB
gene_biotype: protein_coding
description:
  ATP synthase alpha/beta chain, C-terminal domain protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit.


ensembl_gene_id: STRPO_1564
symbol: ntpD
gene_biotype: protein_coding
description:
  V-type ATPase, D subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.


ensembl_gene_id: STRPO_1565
symbol: csdA
gene_biotype: protein_coding
description:
  Glycyl-radical enzyme activating protein; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR02494.


ensembl_gene_id: STRPO_1568
symbol: chbA
gene_biotype: protein_coding
description:
  Putative N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIA component; Identified by match to protein family HMM PF02255.


ensembl_gene_id: STRPO_1570
symbol: gmuC_2
gene_biotype: protein_coding
description:
  Putative PTS system protein, cellobiose-specific IIC component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.


ensembl_gene_id: STRPO_1571
symbol: hpdB
gene_biotype: protein_coding
description:
  Formate C-acetyltransferase; Identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01774.


ensembl_gene_id: STRPO_1573
symbol: gldA
gene_biotype: protein_coding
description:
  Glycerol dehydrogenase; Identified by match to protein family HMM PF00465; match to protein family HMM PF01761.


ensembl_gene_id: STRPO_1576
symbol: hssR
gene_biotype: protein_coding
description:
  Putative heme response regulator HssR; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.


ensembl_gene_id: STRPO_1581
symbol: rlmA
gene_biotype: protein_coding
description:
  Ribosomal RNA large subunit methyltransferase A family protein; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242.


ensembl_gene_id: STRPO_1582
symbol: licR_6
gene_biotype: protein_coding
description:
  PRD domain protein; Identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279.


ensembl_gene_id: STRPO_1587
symbol: tpiA_2
gene_biotype: protein_coding
description:
  Triose-phosphate isomerase; Identified by match to protein family HMM PF00121; match to protein family HMM TIGR00419.


ensembl_gene_id: STRPO_1591
symbol: sigV
gene_biotype: protein_coding
description:
  Sigma-70 region 2; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: STRPO_1596
symbol: nreC
gene_biotype: protein_coding
description:
  Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.


ensembl_gene_id: STRPO_1599
symbol: EGJ26963.1
gene_biotype: protein_coding
description:
  Putative galactitol-specific phosphotransferase enzyme IIB component; Identified by match to protein family HMM PF02302.


ensembl_gene_id: STRPO_1602
symbol: EGJ26480.1
gene_biotype: protein_coding
description:
  Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370.


ensembl_gene_id: STRPO_1612
symbol: srrA
gene_biotype: protein_coding
description:
  Putative transcriptional regulatory protein ResD; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.


ensembl_gene_id: STRPO_1617
symbol: EGJ28108.1
gene_biotype: protein_coding
description:
  Glutathione S-transferase, C-terminal domain protein; Identified by match to protein family HMM PF00043.


ensembl_gene_id: STRPO_1620
symbol: lepB_3
gene_biotype: protein_coding
description:
  Signal peptidase I; Identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227.


ensembl_gene_id: STRPO_1621
symbol: EGJ27837.1
gene_biotype: protein_coding
description:
  Repeat protein; Identified by match to protein family HMM PF05738; match to protein family HMM PF09479; match to protein family HMM TIGR01167; match to protein family HMM TIGR02543.


ensembl_gene_id: STRPO_1622
symbol: EGJ28229.1
gene_biotype: protein_coding
description:
  LPXTG-motif cell wall anchor domain protein; Identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167.


ensembl_gene_id: STRPO_1625
symbol: feoB
gene_biotype: protein_coding
description:
  Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.


ensembl_gene_id: STRPO_1627
symbol: mntH
gene_biotype: protein_coding
description:
  Manganese transport protein MntH; Identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197.


ensembl_gene_id: STRPO_1628
symbol: lpd
gene_biotype: protein_coding
description:
  Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992.


ensembl_gene_id: STRPO_1630
symbol: saeR
gene_biotype: protein_coding
description:
  Response regulator SaeR; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.


ensembl_gene_id: STRPO_1635
symbol: rgg
gene_biotype: protein_coding
description:
  Transcriptional activator, Rgg/GadR/MutR family, C-terminal domain protein; Identified by match to protein family HMM TIGR01716.


ensembl_gene_id: STRPO_1636
symbol: adcA_2
gene_biotype: protein_coding
description:
  Lysis protein; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.


ensembl_gene_id: STRPO_1637
symbol: EGJ28070.1
gene_biotype: protein_coding
description:
  Histidine triad protein; Identified by match to protein family HMM PF04270; match to protein family HMM TIGR01363.


ensembl_gene_id: STRPO_1643
symbol: sagC
gene_biotype: protein_coding
description:
  Bacteriocin biosynthesis cyclodehydratase, SagC; Identified by match to protein family HMM TIGR03603.


ensembl_gene_id: STRPO_1644
symbol: EGJ28166.1
gene_biotype: protein_coding
description:
  YcaO-like family; Identified by match to protein family HMM PF02624; match to protein family HMM TIGR03604.


ensembl_gene_id: STRPO_1650
symbol: yvdD
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730; Belongs to the LOG family.


ensembl_gene_id: STRPO_1657
symbol: EGJ26761.1
gene_biotype: protein_coding
description:
  Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.


ensembl_gene_id: STRPO_1663
symbol: EGJ26768.1
gene_biotype: protein_coding
description:
  Site-specific recombinase, phage integrase family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.


ensembl_gene_id: STRPO_1670
symbol: rarA
gene_biotype: protein_coding
description:
  Recombination factor protein RarA; Identified by match to protein family HMM PF00004; match to protein family HMM PF07728.


ensembl_gene_id: STRPO_1671
symbol: pabA
gene_biotype: protein_coding
description:
  Glutamine amidotransferase, class I; Identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566.


ensembl_gene_id: STRPO_1672
symbol: pabB
gene_biotype: protein_coding
description:
  Aminodeoxychorismate synthase, component I; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00553.


ensembl_gene_id: STRPO_1675
symbol: prmA
gene_biotype: protein_coding
description:
  Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.


ensembl_gene_id: STRPO_1676
symbol: rsmE
gene_biotype: protein_coding
description:
  RNA methyltransferase, RsmE family; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.


ensembl_gene_id: STRPO_1677
symbol: ptsG
gene_biotype: protein_coding
description:
  PTS system protein IIBC component; Identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR02003.


ensembl_gene_id: STRPO_1681
symbol: nrdI
gene_biotype: protein_coding
description:
  Putative nrdI protein; Identified by match to protein family HMM PF07972; Belongs to the NrdI family.


ensembl_gene_id: STRPO_1682
symbol: yfkN_2
gene_biotype: protein_coding
description:
  Bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase protein; Identified by match to protein family HMM PF00149; match to protein family HMM PF00746; match to protein family HMM PF02872; match to protein family HMM TIGR01167.


ensembl_gene_id: STRPO_1683
symbol: relA
gene_biotype: protein_coding
description:
  GTP diphosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.


ensembl_gene_id: STRPO_1684
symbol: dtd
gene_biotype: protein_coding
description:
  D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family.


ensembl_gene_id: STRPO_1686
symbol: msmK
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.


ensembl_gene_id: STRPO_1688
symbol: pulA-2
gene_biotype: protein_coding
description:
  Pullulanase, extracellular; Identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM PF03714; match to protein family HMM PF04650; match to protein family HMM TIGR01168; match to protein family HMM TIGR02102.


ensembl_gene_id: STRPO_1691
symbol: galK
gene_biotype: protein_coding
description:
  Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.


ensembl_gene_id: STRPO_1692
symbol: galT
gene_biotype: protein_coding
description:
  UTP--hexose-1-phosphate uridylyltransferase; Identified by match to protein family HMM PF01087; match to protein family HMM PF02744; match to protein family HMM TIGR01239.


ensembl_gene_id: STRPO_1693
symbol: galE
gene_biotype: protein_coding
description:
  UDP-glucose 4-epimerase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; Belongs to the NAD(P)-dependent epimerase/dehydratase family.


ensembl_gene_id: STRPO_1695
symbol: yajC
gene_biotype: protein_coding
description:
  Preprotein translocase, YajC subunit; Identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739.


ensembl_gene_id: STRPO_1696
symbol: uppS
gene_biotype: protein_coding
description:
  Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.


ensembl_gene_id: STRPO_1697
symbol: cdsA
gene_biotype: protein_coding
description:
  Phosphatidate cytidylyltransferase; Identified by match to protein family HMM PF01148; Belongs to the CDS family.


ensembl_gene_id: STRPO_1698
symbol: rseP
gene_biotype: protein_coding
description:
  RIP metalloprotease RseP; Identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054.


ensembl_gene_id: STRPO_1699
symbol: proS
gene_biotype: protein_coding
description:
  proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacy [...]


ensembl_gene_id: STRPO_1700
symbol: opuCD
gene_biotype: protein_coding
description:
  Glycine betaine/carnitine/choline transport system permease protein opuCD; Identified by match to protein family HMM PF00528.


ensembl_gene_id: STRPO_1701
symbol: opuCC
gene_biotype: protein_coding
description:
  Glycine betaine/carnitine/choline-binding protein; Identified by match to protein family HMM PF04069.


ensembl_gene_id: STRPO_1703
symbol: opuBA
gene_biotype: protein_coding
description:
  Choline ABC transporter, ATP-binding protein OpuBA; Identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186.


ensembl_gene_id: STRPO_1704
symbol: polC
gene_biotype: protein_coding
description:
  DNA polymerase III, alpha subunit, Gram-positive type; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.


ensembl_gene_id: STRPO_1706
symbol: EGJ27437.1
gene_biotype: protein_coding
description:
  Flavin reductase; Identified by match to protein family HMM PF02525; match to protein family HMM PF03358.


ensembl_gene_id: STRPO_1707
symbol: def_2
gene_biotype: protein_coding
description:
  Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.


ensembl_gene_id: STRPO_1710
symbol: EGJ28329.1
gene_biotype: protein_coding
description:
  Cyclic nucleotide-binding domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.


ensembl_gene_id: STRPO_1711
symbol: yeiL
gene_biotype: protein_coding
description:
  Cyclic nucleotide-binding domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00027.


ensembl_gene_id: STRPO_1713
symbol: rpsO
gene_biotype: protein_coding
description:
  Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.


ensembl_gene_id: STRPO_1715
symbol: ulaC_2
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate-dependent sugar PTS family porter, EIIA 2; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF00359; match to protein family HMM PF00874.


ensembl_gene_id: STRPO_1718
symbol: tal_2
gene_biotype: protein_coding
description:
  Transaldolase; Identified by match to protein family HMM PF00923; match to protein family HMM TIGR02134.


ensembl_gene_id: STRPO_1720
symbol: pnp
gene_biotype: protein_coding
description:
  Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.


ensembl_gene_id: STRPO_1723
symbol: cysS
gene_biotype: protein_coding
description:
  cysteine--tRNA ligase; Identified by match to protein family HMM PF01406; match to protein family HMM PF09190; match to protein family HMM PF09334; match to protein family HMM TIGR00435; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: STRPO_1724
symbol: mrnC
gene_biotype: protein_coding
description:
  RNase3 domain protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family.


ensembl_gene_id: STRPO_1726
symbol: EGJ27230.1
gene_biotype: protein_coding
description:
  RNA methyltransferase, TrmH family, group 3; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: STRPO_1730
symbol: rplM
gene_biotype: protein_coding
description:
  Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.


ensembl_gene_id: STRPO_1731
symbol: rpsI
gene_biotype: protein_coding
description:
  Ribosomal protein S9; Identified by match to protein family HMM PF00380; Belongs to the universal ribosomal protein uS9 family.


ensembl_gene_id: STRPO_1733
symbol: EGJ26382.1
gene_biotype: protein_coding
description:
  DNA binding domain protein, excisionase family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM TIGR01764.


ensembl_gene_id: STRPO_1735
symbol: EGJ26704.1
gene_biotype: protein_coding
description:
  Replication initiation factor family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.


ensembl_gene_id: STRPO_1741
symbol: bmrA
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00005.


ensembl_gene_id: STRPO_1743
symbol: EGJ28130.1
gene_biotype: protein_coding
description:
  Acetyltransferase, GNAT family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.


ensembl_gene_id: STRPO_1747
symbol: EGJ26866.1
gene_biotype: protein_coding
description:
  Peptidase C26; Identified by match to protein family HMM PF00117; match to protein family HMM PF07722.


ensembl_gene_id: STRPO_1758
symbol: thrA
gene_biotype: protein_coding
description:
  Aspartate kinase; Identified by match to protein family HMM PF00696; match to protein family HMM PF01842; match to protein family HMM TIGR00657; Belongs to the aspartokinase family.


ensembl_gene_id: STRPO_1759
symbol: truA
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.


ensembl_gene_id: STRPO_1762
symbol: EGJ26600.1
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF04260; match to protein family HMM TIGR01440; Belongs to the UPF0340 family.


ensembl_gene_id: STRPO_1763
symbol: mscS
gene_biotype: protein_coding
description:
  Transporter, small conductance mechanosensitive ion channel MscS family protein; Identified by match to protein family HMM PF00924.


ensembl_gene_id: STRPO_1764
symbol: tig
gene_biotype: protein_coding
description:
  Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.


ensembl_gene_id: STRPO_1765
symbol: EGJ26936.1
gene_biotype: protein_coding
description:
  HAD hydrolase, family IA, variant 3; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549.


ensembl_gene_id: STRPO_1766
symbol: rpoE
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, delta subunit; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family.


ensembl_gene_id: STRPO_1767
symbol: pyrG
gene_biotype: protein_coding
description:
  CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.


ensembl_gene_id: STRPO_1768
symbol: yehU
gene_biotype: protein_coding
description:
  LytS/YhcK-type transmembrane receptor domain protein; Identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF06580; match to protein family HMM PF07694.


ensembl_gene_id: STRPO_1769
symbol: lytT
gene_biotype: protein_coding
description:
  Sensory transduction protein LytT; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.


ensembl_gene_id: STRPO_1774
symbol: fba
gene_biotype: protein_coding
description:
  Fructose-1,6-bisphosphate aldolase, class II; Identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167; match to protein family HMM TIGR01859.


ensembl_gene_id: STRPO_1775
symbol: pdhA
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase E1 component subunit alpha; Identified by match to protein family HMM PF00676.


ensembl_gene_id: STRPO_1776
symbol: pdhB
gene_biotype: protein_coding
description:
  Pyruvate dehydrogenase E1 component subunit beta; Identified by match to protein family HMM PF02779; match to protein family HMM PF02780.


ensembl_gene_id: STRPO_1777
symbol: pdhC
gene_biotype: protein_coding
description:
  Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex; Identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817.


ensembl_gene_id: STRPO_1778
symbol: lpdA_2
gene_biotype: protein_coding
description:
  Dihydrolipoyl dehydrogenase; Identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350.


ensembl_gene_id: STRPO_1781
symbol: buk
gene_biotype: protein_coding
description:
  Butyrate kinase; Identified by match to protein family HMM PF00871; match to protein family HMM TIGR02707; Belongs to the acetokinase family.


ensembl_gene_id: STRPO_1782
symbol: EGJ26790.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466.


ensembl_gene_id: STRPO_1785
symbol: rpmB
gene_biotype: protein_coding
description:
  Ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.


ensembl_gene_id: STRPO_1787
symbol: EGJ27059.1
gene_biotype: protein_coding
description:
  DAK2 domain fusion protein YloV; Identified by match to protein family HMM PF02734; match to protein family HMM TIGR03599.


ensembl_gene_id: STRPO_1791
symbol: glnP_2
gene_biotype: protein_coding
description:
  ABC transporter, permease protein; Identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726.


ensembl_gene_id: STRPO_1793
symbol: uppP
gene_biotype: protein_coding
description:
  Putative undecaprenyl-diphosphatase UppP; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.


ensembl_gene_id: STRPO_1794
symbol: mecA
gene_biotype: protein_coding
description:
  Negative regulator of genetic competence (MecA); Enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis.


ensembl_gene_id: STRPO_1796
symbol: sufC
gene_biotype: protein_coding
description:
  FeS assembly ATPase SufC; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978.


ensembl_gene_id: STRPO_1797
symbol: sufD
gene_biotype: protein_coding
description:
  FeS assembly protein SufD; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981.


ensembl_gene_id: STRPO_1798
symbol: sufS
gene_biotype: protein_coding
description:
  Cysteine desulfurase, SufS family; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.


ensembl_gene_id: STRPO_1799
symbol: iscU
gene_biotype: protein_coding
description:
  SUF system FeS assembly protein, NifU family; Identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994.


ensembl_gene_id: STRPO_1800
symbol: sufB
gene_biotype: protein_coding
description:
  FeS assembly protein SufB; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980.


ensembl_gene_id: STRPO_1801
symbol: secY2
gene_biotype: protein_coding
description:
  Accessory Sec system translocase SecY2; Part of the accessory SecA2/SecY2 system specifically required for export of possible cell wall proteins. The central subunit of a protein translocation channel.


ensembl_gene_id: STRPO_1805
symbol: secA2
gene_biotype: protein_coding
description:
  SecA cross-linking domain protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.


ensembl_gene_id: STRPO_1806
symbol: EGJ28289.1
gene_biotype: protein_coding
description:
  SecA wing/scaffold domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF07516.


ensembl_gene_id: STRPO_1807
symbol: gtfA
gene_biotype: protein_coding
description:
  Accessory Sec system glycosylation protein GtfA; Identified by match to protein family HMM PF00534; match to protein family HMM PF09318; match to protein family HMM TIGR02918.


ensembl_gene_id: STRPO_1809
symbol: EGJ26556.1
gene_biotype: protein_coding
description:
  Putative serine-aspartate repeat protein F; Identified by match to protein family HMM PF05738; match to protein family HMM TIGR01167; match to protein family HMM TIGR03715.


ensembl_gene_id: STRPO_1810
symbol: dacA_3
gene_biotype: protein_coding
description:
  Putative phage DNA packaging protein; Identified by match to protein family HMM PF00768; Belongs to the peptidase S11 family.


ensembl_gene_id: STRPO_1811
symbol: dacA_2
gene_biotype: protein_coding
description:
  Serine-type D-Ala-D-Ala carboxypeptidase; Identified by match to protein family HMM PF00768; overlaps another CDS with the same product name; Belongs to the peptidase S11 family.


ensembl_gene_id: STRPO_1812
symbol: dacA_1
gene_biotype: protein_coding
description:
  Serine-type D-Ala-D-Ala carboxypeptidase; Identified by match to protein family HMM PF00768; match to protein family HMM PF07943; overlaps another CDS with the same product name; Belongs to the peptidase S11 family.


ensembl_gene_id: STRPO_1816
symbol: dppD
gene_biotype: protein_coding
description:
  Dipeptide ABC transporter, ATP-binding protein DppD; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.


ensembl_gene_id: STRPO_1832
symbol: rumA_1
gene_biotype: protein_coding
description:
  23S rRNA (uracil-5-)-methyltransferase RumA; Identified by match to protein family HMM PF01938; match to protein family HMM PF05958; match to protein family HMM TIGR00479.


ensembl_gene_id: STRPO_1834
symbol: EGJ27466.1
gene_biotype: protein_coding
description:
  M protein trans-acting positive regulator; Identified by match to protein family HMM PF05043; match to protein family HMM PF08270; match to protein family HMM PF08280.


ensembl_gene_id: STRPO_1835
symbol: EGJ27860.1
gene_biotype: protein_coding
description:
  Gram-positive signal peptide protein, YSIRK family; Identified by match to protein family HMM PF02986; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168.


ensembl_gene_id: STRPO_1843
symbol: aroE
gene_biotype: protein_coding
description:
  Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).


ensembl_gene_id: STRPO_1844
symbol: aroD_2
gene_biotype: protein_coding
description:
  3-dehydroquinate dehydratase, type I; Identified by match to protein family HMM PF01487; match to protein family HMM TIGR01093.


ensembl_gene_id: STRPO_1845
symbol: EGJ27907.1
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF00724; match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF04205; match to protein family HMM PF07992.


ensembl_gene_id: STRPO_1847
symbol: EGJ28134.1
gene_biotype: protein_coding
description:
  YbaK/proline--tRNA ligase associated domain protein; Identified by match to protein family HMM PF04073.


ensembl_gene_id: STRPO_1851
symbol: EGJ26799.1
gene_biotype: protein_coding
description:
  Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.


ensembl_gene_id: STRPO_1860
symbol: valS
gene_biotype: protein_coding
description:
  valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.


ensembl_gene_id: STRPO_1869
symbol: EGJ26554.1
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl carrier protein) synthase III; Identified by match to protein family HMM PF08541; match to protein family HMM PF08545.


ensembl_gene_id: STRPO_1873
symbol: EGJ27592.1
gene_biotype: protein_coding
description:
  Helicase C-terminal domain protein; Identified by match to protein family HMM PF00271; match to protein family HMM PF04851.


ensembl_gene_id: STRPO_1876
symbol: EGJ26586.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165.


ensembl_gene_id: STRPO_1878
symbol: malK
gene_biotype: protein_coding
description:
  Putative lactose ABC transporter, ATP-binding protein LacK; Identified by match to protein family HMM PF00005; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.


ensembl_gene_id: STRPO_1886
symbol: ntcA
gene_biotype: protein_coding
description:
  Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027; match to protein family HMM PF00325.


ensembl_gene_id: STRPO_1887
symbol: arcA
gene_biotype: protein_coding
description:
  Arginine deiminase; Identified by match to protein family HMM PF02274; match to protein family HMM TIGR01078.


ensembl_gene_id: STRPO_1890
symbol: arcT
gene_biotype: protein_coding
description:
  Putative dipeptidase; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01887.


ensembl_gene_id: STRPO_1892
symbol: asnA
gene_biotype: protein_coding
description:
  Aspartate--ammonia ligase; Identified by match to protein family HMM PF03590; match to protein family HMM TIGR00669.


ensembl_gene_id: STRPO_1893
symbol: rsmD
gene_biotype: protein_coding
description:
  RNA methyltransferase, RsmD family; Identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095.


ensembl_gene_id: STRPO_1894
symbol: coaD
gene_biotype: protein_coding
description:
  Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.


ensembl_gene_id: STRPO_1901
symbol: rbsR
gene_biotype: protein_coding
description:
  Putative ribose operon repressor; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532.


ensembl_gene_id: STRPO_1902
symbol: rbsK
gene_biotype: protein_coding
description:
  Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.


ensembl_gene_id: STRPO_1904
symbol: rbsA
gene_biotype: protein_coding
description:
  Ribose transport, ATP-binding protein RbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.


ensembl_gene_id: STRPO_1905
symbol: rbsC
gene_biotype: protein_coding
description:
  Ribose transport system permease protein RbsC; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: STRPO_1909
symbol: rlmN
gene_biotype: protein_coding
description:
  23S rRNA m2A2503 methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.


ensembl_gene_id: STRPO_1913
symbol: outO
gene_biotype: protein_coding
description:
  Bacterial peptidase A24, N-terminal domain protein; Identified by match to protein family HMM PF01478; match to protein family HMM PF06750.


ensembl_gene_id: STRPO_1917
symbol: typA
gene_biotype: protein_coding
description:
  GTP-binding protein TypA; Identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394.


ensembl_gene_id: STRPO_1919
symbol: murD
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.


ensembl_gene_id: STRPO_1920
symbol: murG
gene_biotype: protein_coding
description:
  Glycosyltransferase family 28 N-terminal domain protein; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.


ensembl_gene_id: STRPO_1921
symbol: divIB
gene_biotype: protein_coding
description:
  Cell division protein FtsQ; Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex; Belongs to the FtsQ/DivIB family. DivIB subfamily.


ensembl_gene_id: STRPO_1922
symbol: ftsA
gene_biotype: protein_coding
description:
  Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.


ensembl_gene_id: STRPO_1923
symbol: ftsZ
gene_biotype: protein_coding
description:
  Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.


ensembl_gene_id: STRPO_1924
symbol: EGJ26873.1
gene_biotype: protein_coding
description:
  Pyridoxal phosphate enzyme, YggS family; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.


ensembl_gene_id: STRPO_1925
symbol: sepF
gene_biotype: protein_coding
description:
  Hypothetical protein; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA.


ensembl_gene_id: STRPO_1929
symbol: ileS
gene_biotype: protein_coding
description:
  isoleucine--tRNA ligase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile).


ensembl_gene_id: STRPO_1931
symbol: EGJ26982.1
gene_biotype: protein_coding
description:
  Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293; Belongs to the Nudix hydrolase family.


ensembl_gene_id: STRPO_1932
symbol: clpC_3
gene_biotype: protein_coding
description:
  Negative regulator of genetic competence ClpC/MecB; Identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF07724; match to protein family HMM PF07728; Belongs to the ClpA/ClpB family.


ensembl_gene_id: STRPO_1934
symbol: folD
gene_biotype: protein_coding
description:
  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.


ensembl_gene_id: STRPO_1935
symbol: nnrD
gene_biotype: protein_coding
description:
  YjeF C-terminal domain protein; Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S-and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.


ensembl_gene_id: STRPO_1936
symbol: xseA
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.


ensembl_gene_id: STRPO_1937
symbol: xseB
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.


ensembl_gene_id: STRPO_1938
symbol: fps
gene_biotype: protein_coding
description:
  Geranyltranstransferase; Identified by match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: STRPO_1939
symbol: rrmJ
gene_biotype: protein_coding
description:
  Ribosomal RNA large subunit methyltransferase J; Identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478.


ensembl_gene_id: STRPO_1945
symbol: hupB
gene_biotype: protein_coding
description:
  DNA-binding protein HU-beta; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.


ensembl_gene_id: STRPO_1946
symbol: aphA
gene_biotype: protein_coding
description:
  HAD phosphatase, family IIIB; Identified by match to protein family HMM PF03767; match to protein family HMM TIGR01672.


ensembl_gene_id: STRPO_1948
symbol: cadA
gene_biotype: protein_coding
description:
  Cadmium-exporting ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525.


ensembl_gene_id: STRPO_1950
symbol: gpmA_2
gene_biotype: protein_coding
description:
  Phosphoglycerate mutase 1 family; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.


ensembl_gene_id: STRPO_1951
symbol: niaR
gene_biotype: protein_coding
description:
  3H domain protein; Identified by match to protein family HMM PF02829; match to protein family HMM PF08279.


ensembl_gene_id: STRPO_1954
symbol: penA
gene_biotype: protein_coding
description:
  Penicillin-binding protein, transpeptidase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717.


ensembl_gene_id: STRPO_1955
symbol: recR
gene_biotype: protein_coding
description:
  Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.


ensembl_gene_id: STRPO_1956
symbol: ddlA
gene_biotype: protein_coding
description:
  D-ala D-ala ligase N-terminal domain protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.


ensembl_gene_id: STRPO_1957
symbol: murF
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.


ensembl_gene_id: STRPO_1959
symbol: prfC
gene_biotype: protein_coding
description:
  Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.


ensembl_gene_id: STRPO_1962
symbol: cshA
gene_biotype: protein_coding
description:
  DEAD-box ATP-dependent RNA helicase CshA; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity; Belongs to the DEAD box helicase family. CshA subfamily.


ensembl_gene_id: STRPO_1963
symbol: kup
gene_biotype: protein_coding
description:
  Potassium transporter; Transport of potassium into the cell; Belongs to the HAK/KUP transporter (TC 2.A.72) family.


ensembl_gene_id: STRPO_1967
symbol: EGJ28295.1
gene_biotype: protein_coding
description:
  Methyltransferase small domain protein; Identified by match to protein family HMM PF05175; Belongs to the methyltransferase superfamily.


ensembl_gene_id: STRPO_1968
symbol: plsC
gene_biotype: protein_coding
description:
  Acyltransferase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01553.


ensembl_gene_id: STRPO_1969
symbol: comEA
gene_biotype: protein_coding
description:
  ComE operon protein 1; Identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426.


ensembl_gene_id: STRPO_1970
symbol: EGJ27632.1
gene_biotype: protein_coding
description:
  DNA internalization competence protein ComEC/Rec2-like protein; Identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.


ensembl_gene_id: STRPO_1971
symbol: holA
gene_biotype: protein_coding
description:
  DNA polymerase III, delta subunit; Identified by match to protein family HMM PF06144; match to protein family HMM TIGR01128.


ensembl_gene_id: STRPO_1972
symbol: sodA
gene_biotype: protein_coding
description:
  Superoxide dismutase, Mn; Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems.


ensembl_gene_id: STRPO_1974
symbol: queA
gene_biotype: protein_coding
description:
  S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).


ensembl_gene_id: STRPO_1975
symbol: nagB
gene_biotype: protein_coding
description:
  Glucosamine-6-phosphate deaminase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion.


ensembl_gene_id: STRPO_1976
symbol: rsuA
gene_biotype: protein_coding
description:
  Putative 16S pseudouridylate 516 synthase; Identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: STRPO_1980
symbol: EGJ27478.1
gene_biotype: protein_coding
description:
  HAD hydrolase, family IA, variant 3; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509.


ensembl_gene_id: STRPO_1981
symbol: EGJ28163.1
gene_biotype: protein_coding
description:
  Methyltransferase domain protein; Identified by match to protein family HMM PF01596; match to protein family HMM PF08241.


ensembl_gene_id: STRPO_1982
symbol: prsA1
gene_biotype: protein_coding
description:
  Putative foldase protein PrsA; Plays a major role in protein secretion by helping the post- translocational extracellular folding of several secreted proteins.


ensembl_gene_id: STRPO_1983
symbol: alaS
gene_biotype: protein_coding
description:
  alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.


ensembl_gene_id: STRPO_1985
symbol: nrdF1
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase, beta subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family.


ensembl_gene_id: STRPO_1986
symbol: nrdE.2
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.


ensembl_gene_id: STRPO_1987
symbol: nrdH
gene_biotype: protein_coding
description:
  Glutaredoxin-like protein NrdH; Identified by match to protein family HMM PF00462; match to protein family HMM TIGR02194.


ensembl_gene_id: STRPO_1988
symbol: ptsH
gene_biotype: protein_coding
description:
  Phosphocarrier protein HPr; Identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003.


ensembl_gene_id: STRPO_1989
symbol: ptsP
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate-protein phosphotransferase; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).


ensembl_gene_id: STRPO_1990
symbol: gapN
gene_biotype: protein_coding
description:
  Glyceraldehyde-3-phosphate dehydrogenase (NADP+); Identified by match to protein family HMM PF00171.


ensembl_gene_id: STRPO_1992
symbol: EGJ28203.1
gene_biotype: protein_coding
description:
  DEAD/DEAH box helicase; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271.


ensembl_gene_id: STRPO_1993
symbol: udk
gene_biotype: protein_coding
description:
  Uridine kinase; Identified by match to protein family HMM PF00485; match to protein family HMM TIGR00235.


ensembl_gene_id: STRPO_1995
symbol: dnaX
gene_biotype: protein_coding
description:
  DNA polymerase III, subunit gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.


ensembl_gene_id: STRPO_1997
symbol: birA
gene_biotype: protein_coding
description:
  biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.


ensembl_gene_id: STRPO_1998
symbol: inlA
gene_biotype: protein_coding
description:
  Leucine rich repeat protein; Identified by match to protein family HMM PF00560; match to protein family HMM PF04270.


ensembl_gene_id: STRPO_1999
symbol: metK_2
gene_biotype: protein_coding
description:
  Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.


ensembl_gene_id: STRPO_2003
symbol: uidA_2
gene_biotype: protein_coding
description:
  Glycosyl hydrolase family 2, TIM barrel domain protein; Identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; Belongs to the glycosyl hydrolase 2 family.


ensembl_gene_id: STRPO_2004
symbol: pdhR
gene_biotype: protein_coding
description:
  FCD domain protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.


ensembl_gene_id: STRPO_2005
symbol: eda
gene_biotype: protein_coding
description:
  2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; Identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182.


ensembl_gene_id: STRPO_2008
symbol: EGJ26423.1
gene_biotype: protein_coding
description:
  Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: STRPO_2010
symbol: nag3
gene_biotype: protein_coding
description:
  Putative beta-N-acetylglucosaminidase/beta-glucosidase; Identified by match to protein family HMM PF00933.


ensembl_gene_id: STRPO_2012
symbol: EGJ27120.1
gene_biotype: protein_coding
description:
  DRTGG domain protein; Identified by match to protein family HMM PF00571; match to protein family HMM PF07085.


ensembl_gene_id: STRPO_2013
symbol: map
gene_biotype: protein_coding
description:
  Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.


ensembl_gene_id: STRPO_2015
symbol: aroA
gene_biotype: protein_coding
description:
  3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.


ensembl_gene_id: STRPO_2016
symbol: aroK
gene_biotype: protein_coding
description:
  Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.


ensembl_gene_id: STRPO_2017
symbol: msrR
gene_biotype: protein_coding
description:
  Cell envelope-like function transcriptional attenuator common domain protein; Identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350.


ensembl_gene_id: STRPO_2018
symbol: rumA_2
gene_biotype: protein_coding
description:
  23S rRNA (uracil-5-)-methyltransferase RumA; Identified by match to protein family HMM PF01938; match to protein family HMM PF05958; match to protein family HMM TIGR00479; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.


ensembl_gene_id: STRPO_2020
symbol: EGJ27871.1
gene_biotype: protein_coding
description:
  Replication initiator protein A, N-terminal domain protein; Identified by match to protein family HMM PF06970.


ensembl_gene_id: STRPO_2021
symbol: hpaIIM
gene_biotype: protein_coding
description:
  Modification methylase HpaII; Identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675.


ensembl_gene_id: STRPO_2032
symbol: EGJ26422.1
gene_biotype: protein_coding
description:
  CHAP domain protein; Identified by match to protein family HMM PF01551; match to protein family HMM PF05257.


ensembl_gene_id: STRPO_2034
symbol: EGJ26871.1
gene_biotype: protein_coding
description:
  Putative cross-wall-targeting lipoprotein signal; Identified by match to protein family HMM PF00746; match to protein family HMM PF08363; match to protein family HMM TIGR01167; match to protein family HMM TIGR03726.


ensembl_gene_id: STRPO_2037
symbol: EGJ27258.1
gene_biotype: protein_coding
description:
  Type III restriction enzyme, res subunit; Identified by match to protein family HMM PF00176; match to protein family HMM PF02384; match to protein family HMM PF04851.


ensembl_gene_id: STRPO_2039
symbol: EGJ26992.1
gene_biotype: protein_coding
description:
  Putative translation elongation factor G; Identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF03764; match to protein family HMM TIGR00231.


ensembl_gene_id: STRPO_2040
symbol: EGJ28066.1
gene_biotype: protein_coding
description:
  Sigma-70, region 4; Identified by match to protein family HMM PF04545; match to protein family HMM PF08281.


ensembl_gene_id: STRPO_2046
symbol: EGJ27527.1
gene_biotype: protein_coding
description:
  Putative TnpX site-specific recombinase; Identified by match to protein family HMM PF00239; match to protein family HMM PF07508.


ensembl_gene_id: STRPO_2050
symbol: EGJ26908.1
gene_biotype: protein_coding
description:
  Phage integrase, N-terminal SAM domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00589; match to protein family HMM PF02899.


