# geneInfo

ensembl_gene_id: DvMF_0001
symbol: dnaA
gene_biotype: protein_coding
description:
  Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.


ensembl_gene_id: DvMF_0002
symbol: DvMF_0002
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: dde:Dde_2318 transcriptional regulator.


ensembl_gene_id: DvMF_0004
symbol: DvMF_0004
gene_biotype: protein_coding
description:
  PFAM: TPR repeat-containing protein; protein of unknown function DUF181; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_2348 hypothetical protein.


ensembl_gene_id: DvMF_0008
symbol: dksA
gene_biotype: protein_coding
description:
  Transcriptional regulator, TraR/DksA family; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.


ensembl_gene_id: DvMF_0009
symbol: DvMF_0009
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: dde:Dde_2344 hypothetical protein.


ensembl_gene_id: DvMF_0010
symbol: DvMF_0010
gene_biotype: protein_coding
description:
  Diguanylate phosphodiesterase; PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; KEGG: dde:Dde_2343 diguanylate phosphodiesterase.


ensembl_gene_id: DvMF_0011
symbol: DvMF_0011
gene_biotype: protein_coding
description:
  PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; KEGG: gvi:glr2358 L-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family.


ensembl_gene_id: DvMF_0012
symbol: DvMF_0012
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_2342 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.


ensembl_gene_id: DvMF_0013
symbol: DvMF_0013
gene_biotype: protein_coding
description:
  Fructose-1,6-bisphosphate aldolase, class II; KEGG: dde:Dde_2341 fructose-bisphosphate aldolase; TIGRFAM: ketose-bisphosphate aldolase; fructose-1,6-bisphosphate aldolase, class II; PFAM: ketose-bisphosphate aldolase class-II.


ensembl_gene_id: DvMF_0014
symbol: DvMF_0014
gene_biotype: protein_coding
description:
  PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; KEGG: glo:Glov_3394 pyruvate phosphate dikinase PEP/pyruvate-binding.


ensembl_gene_id: DvMF_0015
symbol: DvMF_0015
gene_biotype: protein_coding
description:
  Peptidase C26; PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: glo:Glov_3393 peptidase C26.


ensembl_gene_id: DvMF_0021
symbol: surE
gene_biotype: protein_coding
description:
  Stationary-phase survival protein SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.


ensembl_gene_id: DvMF_0022
symbol: DvMF_0022
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_2339 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: nucleic acid binding OB-fold tRNA/helicase-type; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region.


ensembl_gene_id: DvMF_0023
symbol: tmk
gene_biotype: protein_coding
description:
  dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.


ensembl_gene_id: DvMF_0026
symbol: sucD
gene_biotype: protein_coding
description:
  succinyl-CoA synthetase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.


ensembl_gene_id: DvMF_0027
symbol: DvMF_0027
gene_biotype: protein_coding
description:
  TIGRFAM: indolepyruvate/phenylpyruvate decarboxylase; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: dde:Dde_2331 putative phenylpyruvate decarboxylase.


ensembl_gene_id: DvMF_0032
symbol: DvMF_0032
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: har:HEAR1631 hypothetical protein.


ensembl_gene_id: DvMF_0034
symbol: DvMF_0034
gene_biotype: protein_coding
description:
  TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: sfu:Sfum_3923 outer membrane efflux protein.


ensembl_gene_id: DvMF_0035
symbol: DvMF_0035
gene_biotype: protein_coding
description:
  TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sfu:Sfum_3921 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: DvMF_0036
symbol: DvMF_0036
gene_biotype: protein_coding
description:
  TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: sfu:Sfum_3922 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family.


ensembl_gene_id: DvMF_0042
symbol: DvMF_0042
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mca:MCA0504 GGDEF domain-containing protein.


ensembl_gene_id: DvMF_0046
symbol: DvMF_0046
gene_biotype: protein_coding
description:
  Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.


ensembl_gene_id: DvMF_0047
symbol: argG
gene_biotype: protein_coding
description:
  PFAM: argininosuccinate synthase; KEGG: dde:Dde_2531 argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.


ensembl_gene_id: DvMF_0051
symbol: DvMF_0051
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 3; KEGG: cvi:CV_1507 amino acid ABC transporter periplasmic protein.


ensembl_gene_id: DvMF_0055
symbol: ftsH
gene_biotype: protein_coding
description:
  ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family.  In the central section; belongs to the AAA ATPase family.


ensembl_gene_id: DvMF_0056
symbol: DvMF_0056
gene_biotype: protein_coding
description:
  Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.


ensembl_gene_id: DvMF_0057
symbol: dacA
gene_biotype: protein_coding
description:
  Protein of unknown function DUF147; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.


ensembl_gene_id: DvMF_0059
symbol: glmM
gene_biotype: protein_coding
description:
  Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.


ensembl_gene_id: DvMF_0060
symbol: DvMF_0060
gene_biotype: protein_coding
description:
  TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: dde:Dde_1518 UDP-glucose pyrophosphorylase.


ensembl_gene_id: DvMF_0061
symbol: priA
gene_biotype: protein_coding
description:
  Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.


ensembl_gene_id: DvMF_0063
symbol: DvMF_0063
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; KEGG: dde:Dde_1521 response regulator receiver domain-containing protein.


ensembl_gene_id: DvMF_0064
symbol: DvMF_0064
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dde:Dde_1522 histidine kinase.


ensembl_gene_id: DvMF_0065
symbol: DvMF_0065
gene_biotype: protein_coding
description:
  PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: sfu:Sfum_3082 membrane protein involved in aromatic hydrocarbon degradation.


ensembl_gene_id: DvMF_0067
symbol: DvMF_0067
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2274 reductase, iron-sulfur binding subunit, putative.


ensembl_gene_id: DvMF_0070
symbol: DvMF_0070
gene_biotype: protein_coding
description:
  PFAM: Nitrate reductase gamma subunit; KEGG: dde:Dde_2271 nitrate reductase, gamma subunit, putative.


ensembl_gene_id: DvMF_0074
symbol: DvMF_0074
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_2265 sulfate adenylyltransferase; TIGRFAM: sulfate adenylyltransferase; PFAM: ATP-sulfurylase.


ensembl_gene_id: DvMF_0076
symbol: rpsG
gene_biotype: protein_coding
description:
  Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.


ensembl_gene_id: DvMF_0077
symbol: fusA
gene_biotype: protein_coding
description:
  Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]


ensembl_gene_id: DvMF_0078
symbol: rpsJ
gene_biotype: protein_coding
description:
  Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.


ensembl_gene_id: DvMF_0079
symbol: rplC
gene_biotype: protein_coding
description:
  Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.


ensembl_gene_id: DvMF_0080
symbol: rplD
gene_biotype: protein_coding
description:
  Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.


ensembl_gene_id: DvMF_0081
symbol: rplW
gene_biotype: protein_coding
description:
  Ribosomal protein L25/L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.


ensembl_gene_id: DvMF_0082
symbol: rplB
gene_biotype: protein_coding
description:
  Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.


ensembl_gene_id: DvMF_0083
symbol: rpsS
gene_biotype: protein_coding
description:
  Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.


ensembl_gene_id: DvMF_0084
symbol: rplV
gene_biotype: protein_coding
description:
  Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).


ensembl_gene_id: DvMF_0085
symbol: rpsC
gene_biotype: protein_coding
description:
  Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.


ensembl_gene_id: DvMF_0086
symbol: rplP
gene_biotype: protein_coding
description:
  Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.


ensembl_gene_id: DvMF_0087
symbol: rpmC
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein L29; KEGG: dde:Dde_2249 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.


ensembl_gene_id: DvMF_0088
symbol: rpsQ
gene_biotype: protein_coding
description:
  Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.


ensembl_gene_id: DvMF_0089
symbol: rplN
gene_biotype: protein_coding
description:
  Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.


ensembl_gene_id: DvMF_0090
symbol: rplX
gene_biotype: protein_coding
description:
  Ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.


ensembl_gene_id: DvMF_0091
symbol: rplE
gene_biotype: protein_coding
description:
  Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.


ensembl_gene_id: DvMF_0092
symbol: rpsZ
gene_biotype: protein_coding
description:
  Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.


ensembl_gene_id: DvMF_0093
symbol: rpsH
gene_biotype: protein_coding
description:
  Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.


ensembl_gene_id: DvMF_0094
symbol: rplF
gene_biotype: protein_coding
description:
  Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.


ensembl_gene_id: DvMF_0095
symbol: rplR
gene_biotype: protein_coding
description:
  Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.


ensembl_gene_id: DvMF_0096
symbol: rpsE
gene_biotype: protein_coding
description:
  Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.


ensembl_gene_id: DvMF_0098
symbol: rplO
gene_biotype: protein_coding
description:
  Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.


ensembl_gene_id: DvMF_0099
symbol: secY
gene_biotype: protein_coding
description:
  Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.


ensembl_gene_id: DvMF_0100
symbol: map
gene_biotype: protein_coding
description:
  Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.


ensembl_gene_id: DvMF_0101
symbol: rpmJ
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein L36; KEGG: dde:Dde_2235 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.


ensembl_gene_id: DvMF_0102
symbol: rpsM
gene_biotype: protein_coding
description:
  Ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.


ensembl_gene_id: DvMF_0103
symbol: rpsK
gene_biotype: protein_coding
description:
  Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.


ensembl_gene_id: DvMF_0104
symbol: rpsD
gene_biotype: protein_coding
description:
  Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.


ensembl_gene_id: DvMF_0105
symbol: rpoA
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: DvMF_0108
symbol: DvMF_0108
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dde:Dde_2226 LysR family transcriptional regulator.


ensembl_gene_id: DvMF_0109
symbol: tig
gene_biotype: protein_coding
description:
  Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.


ensembl_gene_id: DvMF_0110
symbol: clpP
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.


ensembl_gene_id: DvMF_0111
symbol: clpX
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.


ensembl_gene_id: DvMF_0112
symbol: lon
gene_biotype: protein_coding
description:
  ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.


ensembl_gene_id: DvMF_0116
symbol: DvMF_0116
gene_biotype: protein_coding
description:
  Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: dde:Dde_2211 ferric uptake regulator family protein; Belongs to the Fur family.


ensembl_gene_id: DvMF_0119
symbol: DvMF_0119
gene_biotype: protein_coding
description:
  PFAM: periplasmic solute binding protein; KEGG: dde:Dde_2208 cation ABC transporter, periplasmc-binding protein; Belongs to the bacterial solute-binding protein 9 family.


ensembl_gene_id: DvMF_0120
symbol: ispG
gene_biotype: protein_coding
description:
  1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.


ensembl_gene_id: DvMF_0121
symbol: proS
gene_biotype: protein_coding
description:
  prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...]


ensembl_gene_id: DvMF_0122
symbol: xseA
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.


ensembl_gene_id: DvMF_0124
symbol: xseB
gene_biotype: protein_coding
description:
  Exonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.


ensembl_gene_id: DvMF_0125
symbol: DvMF_0125
gene_biotype: protein_coding
description:
  PFAM: Polyprenyl synthetase; KEGG: dde:Dde_2201 farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: DvMF_0126
symbol: dxs
gene_biotype: protein_coding
description:
  Deoxyxylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.


ensembl_gene_id: DvMF_0127
symbol: DvMF_0127
gene_biotype: protein_coding
description:
  PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-4 domain protein; KEGG: dde:Dde_1665 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: DvMF_0128
symbol: DvMF_0128
gene_biotype: protein_coding
description:
  PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: dde:Dde_2198 multiple antibiotic resistance (MarC)-related proteins.


ensembl_gene_id: DvMF_0129
symbol: DvMF_0129
gene_biotype: protein_coding
description:
  PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: dde:Dde_2197 6-pyruvoyl tetrahydrobiopterin synthase, putative.


ensembl_gene_id: DvMF_0130
symbol: DvMF_0130
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_2196 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein.


ensembl_gene_id: DvMF_0135
symbol: DvMF_0135
gene_biotype: protein_coding
description:
  PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sfu:Sfum_3208 haloacid dehalogenase domain protein hydrolase.


ensembl_gene_id: DvMF_0137
symbol: DvMF_0137
gene_biotype: protein_coding
description:
  TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KR domain protein; KEGG: dde:Dde_2187 UDP-galactose 4-epimerase.


ensembl_gene_id: DvMF_0138
symbol: DvMF_0138
gene_biotype: protein_coding
description:
  lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.


ensembl_gene_id: DvMF_0140
symbol: DvMF_0140
gene_biotype: protein_coding
description:
  dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.


ensembl_gene_id: DvMF_0141
symbol: DvMF_0141
gene_biotype: protein_coding
description:
  TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dde:Dde_2182 dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.


ensembl_gene_id: DvMF_0142
symbol: DvMF_0142
gene_biotype: protein_coding
description:
  Anaerobic cobalt chelatase; Catalyzes the insertion of Co(2+) into sirohydrochlorin. Belongs to the CbiK family.


ensembl_gene_id: DvMF_0144
symbol: tatA
gene_biotype: protein_coding
description:
  Twin-arginine translocation protein, TatA/E family subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.


ensembl_gene_id: DvMF_0145
symbol: DvMF_0145
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SMART: Rhodanese domain protein; KEGG: dde:Dde_2176 rhodanese-like protein.


ensembl_gene_id: DvMF_0148
symbol: DvMF_0148
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dde:Dde_2173 HAD family hydrolase.


ensembl_gene_id: DvMF_0151
symbol: DvMF_0151
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF167; KEGG: dde:Dde_2170 hypothetical protein; Belongs to the UPF0235 family.


ensembl_gene_id: DvMF_0153
symbol: DvMF_0153
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_2168 acetolactate synthase, large subunit; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein.


ensembl_gene_id: DvMF_0154
symbol: DvMF_0154
gene_biotype: protein_coding
description:
  TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; acetolactate synthase small subunit; KEGG: dde:Dde_2167 acetolactate synthase 3 regulatory subunit.


ensembl_gene_id: DvMF_0155
symbol: ilvC
gene_biotype: protein_coding
description:
  Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.


ensembl_gene_id: DvMF_0158
symbol: DvMF_0158
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_2018 HesB-like domain-containing protein; Contains selenocysteine; Belongs to the HesB/IscA family.


ensembl_gene_id: DvMF_0160
symbol: pyrR
gene_biotype: protein_coding
description:
  Phosphoribosyltransferase; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant.


ensembl_gene_id: DvMF_0165
symbol: DvMF_0165
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mta:Moth_0451 4Fe-4S ferredoxin, iron-sulfur binding.


ensembl_gene_id: DvMF_0166
symbol: DvMF_0166
gene_biotype: protein_coding
description:
  Formate dehydrogenase; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mta:Moth_0450 formate dehydrogenase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: DvMF_0167
symbol: DvMF_0167
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: gbm:Gbem_1735 twin-arginine translocation pathway signal; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: DvMF_0169
symbol: tadA
gene_biotype: protein_coding
description:
  CMP/dCMP deaminase zinc-binding; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.


ensembl_gene_id: DvMF_0170
symbol: DvMF_0170
gene_biotype: protein_coding
description:
  PFAM: conserved hypothetical protein; KEGG: dde:Dde_1780 hypothetical protein; Belongs to the LOG family.


ensembl_gene_id: DvMF_0171
symbol: DvMF_0171
gene_biotype: protein_coding
description:
  PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: dde:Dde_1781 metallo-beta-lactamase family protein.


ensembl_gene_id: DvMF_0172
symbol: DvMF_0172
gene_biotype: protein_coding
description:
  TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase putative; KEGG: dde:Dde_1782 hypothetical protein.


ensembl_gene_id: DvMF_0173
symbol: coaD
gene_biotype: protein_coding
description:
  Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.


ensembl_gene_id: DvMF_0174
symbol: miaA
gene_biotype: protein_coding
description:
  tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.


ensembl_gene_id: DvMF_0175
symbol: DvMF_0175
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: ppd:Ppro_1978 protein of unknown function DUF395, YeeE/YedE.


ensembl_gene_id: DvMF_0176
symbol: DvMF_0176
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: glo:Glov_2970 protein of unknown function DUF395 YeeE/YedE.


ensembl_gene_id: DvMF_0177
symbol: DvMF_0177
gene_biotype: protein_coding
description:
  PFAM: Lytic transglycosylase catalytic; KEGG: dde:Dde_1786 membrane-bound lytic murein transglycosylase C.


ensembl_gene_id: DvMF_0181
symbol: DvMF_0181
gene_biotype: protein_coding
description:
  PFAM: phosphoadenosine phosphosulfate reductase; KEGG: dde:Dde_1789 phosphoadenylylsulfate reductase (thioredoxin).


ensembl_gene_id: DvMF_0184
symbol: DvMF_0184
gene_biotype: protein_coding
description:
  PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: dde:Dde_1792 pyruvate ferredoxin oxidoreductase, alpha subunit.


ensembl_gene_id: DvMF_0185
symbol: DvMF_0185
gene_biotype: protein_coding
description:
  TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: dde:Dde_1793 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate.


ensembl_gene_id: DvMF_0188
symbol: DvMF_0188
gene_biotype: protein_coding
description:
  TIGRFAM: fructose-1,6-bisphosphatase, class II; PFAM: GlpX family protein; KEGG: dde:Dde_1796 fructose 1,6-bisphosphatase II.


ensembl_gene_id: DvMF_0189
symbol: purU
gene_biotype: protein_coding
description:
  Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).


ensembl_gene_id: DvMF_0192
symbol: DvMF_0192
gene_biotype: protein_coding
description:
  ATP-dependent helicase HrpB; KEGG: mag:amb1260 HrpA-like helicase; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; Helicase ATP-dependent domain protein; SMART: DEAD-like helicases.


ensembl_gene_id: DvMF_0196
symbol: infA
gene_biotype: protein_coding
description:
  Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.


ensembl_gene_id: DvMF_0197
symbol: DvMF_0197
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0265 iron-sulfur cluster-binding protein, putative.


ensembl_gene_id: DvMF_0199
symbol: DvMF_0199
gene_biotype: protein_coding
description:
  ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids.


ensembl_gene_id: DvMF_0202
symbol: purM
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine cyclo-ligase; KEGG: dde:Dde_1672 phosphoribosylaminoimidazole synthetase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein.


ensembl_gene_id: DvMF_0203
symbol: DvMF_0203
gene_biotype: protein_coding
description:
  PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dde:Dde_1676 elongator protein 3/MiaB/NifB.


ensembl_gene_id: DvMF_0209
symbol: DvMF_0209
gene_biotype: protein_coding
description:
  PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: dde:Dde_1681 D-isomer specific 2-hydroxyacid dehydrogenase family protein.


ensembl_gene_id: DvMF_0210
symbol: DvMF_0210
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: bja:blr6548 leucine/isoleucine/valine-binding protein precursor.


ensembl_gene_id: DvMF_0211
symbol: DvMF_0211
gene_biotype: protein_coding
description:
  Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: mms:mma_2307 sensory box/GGDEF family protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.


ensembl_gene_id: DvMF_0213
symbol: DvMF_0213
gene_biotype: protein_coding
description:
  Multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_1684 PAS/PAC sensor signal transduction histidine kinase.


ensembl_gene_id: DvMF_0215
symbol: DvMF_0215
gene_biotype: protein_coding
description:
  Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dde:Dde_1685 two component Fis family transcriptional regulator.


ensembl_gene_id: DvMF_0219
symbol: DvMF_0219
gene_biotype: protein_coding
description:
  Peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: aae:aq_486 alkyl hydroperoxide reductase.


ensembl_gene_id: DvMF_0222
symbol: DvMF_0222
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: dde:Dde_1690 dihydrolipoamide dehydrogenase.


ensembl_gene_id: DvMF_0223
symbol: DvMF_0223
gene_biotype: protein_coding
description:
  Glycine dehydrogenase (decarboxylating); PFAM: glycine cleavage system P-protein; KEGG: dde:Dde_1691 glycine dehydrogenase subunit 2.


ensembl_gene_id: DvMF_0224
symbol: gcvPA
gene_biotype: protein_coding
description:
  Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein.


ensembl_gene_id: DvMF_0225
symbol: gcvH
gene_biotype: protein_coding
description:
  Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.


ensembl_gene_id: DvMF_0226
symbol: DvMF_0226
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; KEGG: dde:Dde_1694 response regulator receiver domain-containing protein.


ensembl_gene_id: DvMF_0227
symbol: DvMF_0227
gene_biotype: protein_coding
description:
  TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific; PFAM: phosphoglucomutase/phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: sus:Acid_3937 phosphoglucomutase.


ensembl_gene_id: DvMF_0229
symbol: DvMF_0229
gene_biotype: protein_coding
description:
  PFAM: DNA methylase N-4/N-6 domain protein; KEGG: xcv:XCV1110 site-specific DNA-methyltransferase (cytosine-N(4)-specific); Belongs to the N(4)/N(6)-methyltransferase family.


ensembl_gene_id: DvMF_0230
symbol: DvMF_0230
gene_biotype: protein_coding
description:
  McrBC 5-methylcytosine restriction system component-like protein; KEGG: cno:NT01CX_1426 hypothetical protein.


ensembl_gene_id: DvMF_0231
symbol: DvMF_0231
gene_biotype: protein_coding
description:
  PFAM: ATPase associated with various cellular activities AAA_5; KEGG: cpf:CPF_0992 McrB domain protein.


ensembl_gene_id: DvMF_0234
symbol: ychF
gene_biotype: protein_coding
description:
  GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.


ensembl_gene_id: DvMF_0236
symbol: DvMF_0236
gene_biotype: protein_coding
description:
  PFAM: peptidase M16 domain protein; KEGG: dde:Dde_1699 M16 family peptidase; Belongs to the peptidase M16 family.


ensembl_gene_id: DvMF_0237
symbol: DvMF_0237
gene_biotype: protein_coding
description:
  Putative CheA signal transduction histidine kinase; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Hpt domain protein; KEGG: dde:Dde_1700 CheA signal transduction histidine kinase.


ensembl_gene_id: DvMF_0239
symbol: DvMF_0239
gene_biotype: protein_coding
description:
  PFAM: Radical SAM domain protein; Beta tubulin, autoregulation binding site; SMART: Elongator protein 3/MiaB/NifB; KEGG: dde:Dde_1701 elongator protein 3/MiaB/NifB.


ensembl_gene_id: DvMF_0243
symbol: rnc
gene_biotype: protein_coding
description:
  Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.


ensembl_gene_id: DvMF_0244
symbol: DvMF_0244
gene_biotype: protein_coding
description:
  Flagellin domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.


ensembl_gene_id: DvMF_0246
symbol: DvMF_0246
gene_biotype: protein_coding
description:
  PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: dde:Dde_1711 flagellar hook protein FlgE.


ensembl_gene_id: DvMF_0247
symbol: DvMF_0247
gene_biotype: protein_coding
description:
  Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.


ensembl_gene_id: DvMF_0252
symbol: DvMF_0252
gene_biotype: protein_coding
description:
  Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dde:Dde_1719 anti-anti-sigma regulatory factor, SpoIIAA; Belongs to the anti-sigma-factor antagonist family.


ensembl_gene_id: DvMF_0253
symbol: DvMF_0253
gene_biotype: protein_coding
description:
  Putative signal transduction histidine kinase; KEGG: dde:Dde_1722 putative anti-sigma regulatory factor (serine/threonine protein kinase).


ensembl_gene_id: DvMF_0254
symbol: DvMF_0254
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: dde:Dde_1723 response regulator receiver (CheY-like) modulated serine phosphatase.


ensembl_gene_id: DvMF_0257
symbol: ispDF
gene_biotype: protein_coding
description:
  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D- erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C- methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF).


ensembl_gene_id: DvMF_0259
symbol: DvMF_0259
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF34; KEGG: dde:Dde_1729 hypothetical protein; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.


ensembl_gene_id: DvMF_0260
symbol: DvMF_0260
gene_biotype: protein_coding
description:
  Thioredoxin-disulfide reductase; PFAM: HI0933 family protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_2151 thioredoxin reductase, putative.


ensembl_gene_id: DvMF_0262
symbol: DvMF_0262
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2146 iron-sulfur cluster-binding protein.


ensembl_gene_id: DvMF_0263
symbol: cpoB
gene_biotype: protein_coding
description:
  Tol-pal system protein YbgF; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.


ensembl_gene_id: DvMF_0265
symbol: lspA
gene_biotype: protein_coding
description:
  Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.


ensembl_gene_id: DvMF_0266
symbol: ileS
gene_biotype: protein_coding
description:
  isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily.


ensembl_gene_id: DvMF_0268
symbol: DvMF_0268
gene_biotype: protein_coding
description:
  TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: dde:Dde_2140 hydrogenase assembly chaperone HypC/HupF.


ensembl_gene_id: DvMF_0269
symbol: DvMF_0269
gene_biotype: protein_coding
description:
  TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; PFAM: peptidase M52 hydrogen uptake protein; KEGG: dde:Dde_2139 hydrogenase expression/formation protein.


ensembl_gene_id: DvMF_0270
symbol: hydB
gene_biotype: protein_coding
description:
  Nickel-dependent hydrogenase large subunit; Catalyzes the reversible oxidoreduction of molecular hydrogen, in conjunction with a specific electron acceptor, cytochrome c3.


ensembl_gene_id: DvMF_0271
symbol: hydA
gene_biotype: protein_coding
description:
  Hydrogenase (NiFe) small subunit HydA; Catalyzes the reversible oxidoreduction of molecular hydrogen, in conjunction with a specific electron acceptor, cytochrome c3.


ensembl_gene_id: DvMF_0272
symbol: DvMF_0272
gene_biotype: protein_coding
description:
  TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: dde:Dde_2136 peptidase M52, hydrogen uptake protein.


ensembl_gene_id: DvMF_0273
symbol: DvMF_0273
gene_biotype: protein_coding
description:
  PFAM: nickel-dependent hydrogenase large subunit; KEGG: dde:Dde_2135 periplasmic (NiFeSe) hydrogenase, large subunit, selenocysteine-containing.


ensembl_gene_id: DvMF_0274
symbol: hysA
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_2134 hydrogenase (NiFe) small subunit (HydA); TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit.


ensembl_gene_id: DvMF_0275
symbol: DvMF_0275
gene_biotype: protein_coding
description:
  TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: dde:Dde_2049 alpha-isopropylmalate/homocitrate synthase family transferase; Belongs to the alpha-IPM synthase/homocitrate synthase family.


ensembl_gene_id: DvMF_0276
symbol: DvMF_0276
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_2048 aspartate kinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; Belongs to the aspartokinase family.


ensembl_gene_id: DvMF_0279
symbol: nnrE
gene_biotype: protein_coding
description:
  Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.  Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow t [...]


ensembl_gene_id: DvMF_0280
symbol: acpS
gene_biotype: protein_coding
description:
  Holo-acyl-carrier-protein synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.


ensembl_gene_id: DvMF_0281
symbol: pdxJ
gene_biotype: protein_coding
description:
  Pyridoxal phosphate biosynthetic protein PdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.


ensembl_gene_id: DvMF_0282
symbol: DvMF_0282
gene_biotype: protein_coding
description:
  Nucleotide sugar dehydrogenase; KEGG: dde:Dde_2042 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase.


ensembl_gene_id: DvMF_0285
symbol: mfd
gene_biotype: protein_coding
description:
  Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.


ensembl_gene_id: DvMF_0287
symbol: DvMF_0287
gene_biotype: protein_coding
description:
  SurA domain protein; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: lip:LI0303 parvulin-like peptidyl-prolyl isomerase.


ensembl_gene_id: DvMF_0290
symbol: glyQ
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_2034 glycyl-tRNA synthetase subunit alpha; TIGRFAM: glycyl-tRNA synthetase, alpha subunit; PFAM: glycyl-tRNA synthetase alpha subunit.


ensembl_gene_id: DvMF_0291
symbol: glyS
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_2033 glycyl-tRNA synthetase, beta subunit; TIGRFAM: glycyl-tRNA synthetase, beta subunit.


ensembl_gene_id: DvMF_0293
symbol: adk
gene_biotype: protein_coding
description:
  Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.


ensembl_gene_id: DvMF_0294
symbol: tilS
gene_biotype: protein_coding
description:
  tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.


ensembl_gene_id: DvMF_0296
symbol: hemA
gene_biotype: protein_coding
description:
  glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).


ensembl_gene_id: DvMF_0301
symbol: DvMF_0301
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_1194 amino acid ABC transporter periplasmic protein.


ensembl_gene_id: DvMF_0303
symbol: DvMF_0303
gene_biotype: protein_coding
description:
  PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: DvMF_0306
symbol: argB
gene_biotype: protein_coding
description:
  Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.


ensembl_gene_id: DvMF_0307
symbol: hslU
gene_biotype: protein_coding
description:
  Heat shock protein HslVU, ATPase subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis.


ensembl_gene_id: DvMF_0308
symbol: DvMF_0308
gene_biotype: protein_coding
description:
  Protease Do; KEGG: dde:Dde_2013 peptidase S1C, Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; Belongs to the peptidase S1C family.


ensembl_gene_id: DvMF_0310
symbol: DvMF_0310
gene_biotype: protein_coding
description:
  PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: dde:Dde_2010 peptidyl-prolyl cis-trans isomerase C.


ensembl_gene_id: DvMF_0311
symbol: DvMF_0311
gene_biotype: protein_coding
description:
  PFAM: heat shock protein Hsp20; KEGG: dde:Dde_2008 HSP20 family protein; Belongs to the small heat shock protein (HSP20) family.


ensembl_gene_id: DvMF_0314
symbol: DvMF_0314
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF485; KEGG: afw:Anae109_3835 protein of unknown function DUF485.


ensembl_gene_id: DvMF_0315
symbol: DvMF_0315
gene_biotype: protein_coding
description:
  TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: afw:Anae109_3836 SSS sodium solute transporter superfamily; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.


ensembl_gene_id: DvMF_0316
symbol: DvMF_0316
gene_biotype: protein_coding
description:
  Putative signal transduction protein with CBS domains; PFAM: CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase putative; KEGG: aae:aq_2107 hypothetical protein.


ensembl_gene_id: DvMF_0317
symbol: DvMF_0317
gene_biotype: protein_coding
description:
  Putative signal transduction protein with CBS domains; PFAM: CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase putative; KEGG: cau:Caur_2724 protein of unknown function DUF294 nucleotidyltransferase putative.


ensembl_gene_id: DvMF_0318
symbol: DvMF_0318
gene_biotype: protein_coding
description:
  PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: afw:Anae109_4029 exonuclease RNase T and DNA polymerase III.


ensembl_gene_id: DvMF_0319
symbol: DvMF_0319
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_1075 iron-sulfur cluster-binding protein.


ensembl_gene_id: DvMF_0320
symbol: DvMF_0320
gene_biotype: protein_coding
description:
  Formate dehydrogenase; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: dde:Dde_1076 thiosulfate reductase, putative; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: DvMF_0321
symbol: DvMF_0321
gene_biotype: protein_coding
description:
  PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_3523 alcohol dehydrogenase, iron-containing.


ensembl_gene_id: DvMF_0323
symbol: DvMF_0323
gene_biotype: protein_coding
description:
  CoB--CoM heterodisulfide reductase; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_1208 succinate dehydrogenase subunit C.


ensembl_gene_id: DvMF_0324
symbol: DvMF_0324
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_3526 heterodisulfide reductase, A subunit.


ensembl_gene_id: DvMF_0325
symbol: DvMF_0325
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; methyl-viologen-reducing hydrogenase delta subunit; KEGG: dde:Dde_3528 hydrogenase, iron-sulfur cluster-binding subunit, putative.


ensembl_gene_id: DvMF_0327
symbol: DvMF_0327
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: dde:Dde_1213 hydrogenase, putative.


ensembl_gene_id: DvMF_0330
symbol: DvMF_0330
gene_biotype: protein_coding
description:
  PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_3534 alcohol dehydrogenase, iron-containing.


ensembl_gene_id: DvMF_0331
symbol: DvMF_0331
gene_biotype: protein_coding
description:
  PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_3535 histidine kinase.


ensembl_gene_id: DvMF_0332
symbol: DvMF_0332
gene_biotype: protein_coding
description:
  Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dde:Dde_3536 two component Fis family transcriptional regulator.


ensembl_gene_id: DvMF_0334
symbol: gluQ
gene_biotype: protein_coding
description:
  Glutamate--tRNA ligase; Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2- cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon; Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily.


ensembl_gene_id: DvMF_0337
symbol: DvMF_0337
gene_biotype: protein_coding
description:
  PFAM: phospholipid/glycerol acyltransferase; KEGG: dde:Dde_2001 phospholipid/glycerol acyltransferase.


ensembl_gene_id: DvMF_0339
symbol: DvMF_0339
gene_biotype: protein_coding
description:
  PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: dde:Dde_1998 recombination factor protein RarA.


ensembl_gene_id: DvMF_0340
symbol: DvMF_0340
gene_biotype: protein_coding
description:
  Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.


ensembl_gene_id: DvMF_0341
symbol: DvMF_0341
gene_biotype: protein_coding
description:
  TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: dde:Dde_1996 glycine cleavage system T protein.


ensembl_gene_id: DvMF_0344
symbol: DvMF_0344
gene_biotype: protein_coding
description:
  TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; KEGG: dde:Dde_1993 rod shape-determining protein MreB.


ensembl_gene_id: DvMF_0347
symbol: DvMF_0347
gene_biotype: protein_coding
description:
  TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: dde:Dde_1990 SSU ribosomal protein S18P alanine acetyltransferase.


ensembl_gene_id: DvMF_0348
symbol: tpiA
gene_biotype: protein_coding
description:
  Triose-phosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.


ensembl_gene_id: DvMF_0349
symbol: DvMF_0349
gene_biotype: protein_coding
description:
  Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.


ensembl_gene_id: DvMF_0352
symbol: DvMF_0352
gene_biotype: protein_coding
description:
  Putative phage repressor; PFAM: CI repressor; peptidase S24 and S26 domain protein; KEGG: dde:Dde_1980 transcriptional regulator, putative.


ensembl_gene_id: DvMF_0353
symbol: lysA
gene_biotype: protein_coding
description:
  Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.


ensembl_gene_id: DvMF_0355
symbol: mutS
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.


ensembl_gene_id: DvMF_0358
symbol: DvMF_0358
gene_biotype: protein_coding
description:
  PFAM: CBS domain containing protein; phosphoesterase RecJ domain protein; Polynucleotide adenylyltransferase region; phosphoesterase DHHA1; KEGG: dde:Dde_1972 CBS; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.


ensembl_gene_id: DvMF_0359
symbol: xerC
gene_biotype: protein_coding
description:
  Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: DvMF_0360
symbol: DvMF_0360
gene_biotype: protein_coding
description:
  PFAM: chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: DvMF_0361
symbol: dapL
gene_biotype: protein_coding
description:
  Aminotransferase class I and II; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate.


ensembl_gene_id: DvMF_0362
symbol: DvMF_0362
gene_biotype: protein_coding
description:
  TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; KEGG: lip:LI0240 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase.


ensembl_gene_id: DvMF_0364
symbol: DvMF_0364
gene_biotype: protein_coding
description:
  Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.


ensembl_gene_id: DvMF_0367
symbol: msbA
gene_biotype: protein_coding
description:
  ABC transporter related; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.


ensembl_gene_id: DvMF_0369
symbol: DvMF_0369
gene_biotype: protein_coding
description:
  Pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: dde:Dde_1958 pseudouridine synthase, Rsu; Belongs to the pseudouridine synthase RsuA family.


ensembl_gene_id: DvMF_0370
symbol: DvMF_0370
gene_biotype: protein_coding
description:
  Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).


ensembl_gene_id: DvMF_0372
symbol: efp
gene_biotype: protein_coding
description:
  Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.


ensembl_gene_id: DvMF_0373
symbol: aroQ
gene_biotype: protein_coding
description:
  3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.


ensembl_gene_id: DvMF_0374
symbol: engB
gene_biotype: protein_coding
description:
  Small GTP-binding protein; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.


ensembl_gene_id: DvMF_0378
symbol: uppP
gene_biotype: protein_coding
description:
  Undecaprenol kinase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.


ensembl_gene_id: DvMF_0379
symbol: DvMF_0379
gene_biotype: protein_coding
description:
  PFAM: natural resistance-associated macrophage protein; KEGG: tpd:Teth39_1570 natural resistance-associated macrophage protein.


ensembl_gene_id: DvMF_0381
symbol: DvMF_0381
gene_biotype: protein_coding
description:
  L-lactate transport; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.


ensembl_gene_id: DvMF_0383
symbol: greA
gene_biotype: protein_coding
description:
  Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.


ensembl_gene_id: DvMF_0387
symbol: DvMF_0387
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 3; KEGG: hch:HCH_06937 amino acid ABC transporter periplasmic protein.


ensembl_gene_id: DvMF_0389
symbol: DvMF_0389
gene_biotype: protein_coding
description:
  Beta-lactamase; PFAM: penicillin-binding protein transpeptidase; KEGG: rfe:RF_1275 beta-lactamase class D.


ensembl_gene_id: DvMF_0391
symbol: DvMF_0391
gene_biotype: protein_coding
description:
  Carbonate dehydratase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.


ensembl_gene_id: DvMF_0392
symbol: DvMF_0392
gene_biotype: protein_coding
description:
  Integral membrane sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dar:Daro_3821 cache sensor hybrid histidine kinase.


ensembl_gene_id: DvMF_0393
symbol: DvMF_0393
gene_biotype: protein_coding
description:
  TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: aba:Acid345_2245 cation diffusion facilitator family transporter; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.


ensembl_gene_id: DvMF_0396
symbol: DvMF_0396
gene_biotype: protein_coding
description:
  TIGRFAM: iron-sulfur cluster binding protein; PFAM: protein of unknown function DUF162; KEGG: dde:Dde_1843 iron-sulfur cluster binding protein.


ensembl_gene_id: DvMF_0397
symbol: DvMF_0397
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_1842 hypothetical protein.


ensembl_gene_id: DvMF_0398
symbol: DvMF_0398
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dde:Dde_1841 short chain dehydrogenase/reductase family oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: DvMF_0399
symbol: DvMF_0399
gene_biotype: protein_coding
description:
  PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: dde:Dde_1840 multiple antibiotic resistance (MarC)-related proteins.


ensembl_gene_id: DvMF_0400
symbol: bamD
gene_biotype: protein_coding
description:
  Putative lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.


ensembl_gene_id: DvMF_0401
symbol: DvMF_0401
gene_biotype: protein_coding
description:
  Thioredoxin-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_2066 thioredoxin reductase (NADPH).


ensembl_gene_id: DvMF_0402
symbol: DvMF_0402
gene_biotype: protein_coding
description:
  TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: dde:Dde_2067 thioredoxin; Belongs to the thioredoxin family.


ensembl_gene_id: DvMF_0403
symbol: tsaD
gene_biotype: protein_coding
description:
  Metalloendopeptidase, glycoprotease family; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.


ensembl_gene_id: DvMF_0404
symbol: fbp
gene_biotype: protein_coding
description:
  PFAM: Inositol phosphatase/fructose-16-bisphosphatase; KEGG: dde:Dde_2069 fructose-1,6-bisphosphatase.


ensembl_gene_id: DvMF_0406
symbol: DvMF_0406
gene_biotype: protein_coding
description:
  PFAM: Tetratricopeptide TPR_4; KEGG: dde:Dde_2071 response regulator receiver/SARP domain-containing protein.


ensembl_gene_id: DvMF_0407
symbol: DvMF_0407
gene_biotype: protein_coding
description:
  Septum formation initiator; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.


ensembl_gene_id: DvMF_0409
symbol: DvMF_0409
gene_biotype: protein_coding
description:
  TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: dde:Dde_2074 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: DvMF_0410
symbol: DvMF_0410
gene_biotype: protein_coding
description:
  Mrp protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.


ensembl_gene_id: DvMF_0412
symbol: pcm
gene_biotype: protein_coding
description:
  protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.


ensembl_gene_id: DvMF_0413
symbol: DvMF_0413
gene_biotype: protein_coding
description:
  Putative signal transduction protein with CBS domains; PFAM: CBS domain containing protein; KEGG: dde:Dde_2078 CBS.


ensembl_gene_id: DvMF_0416
symbol: DvMF_0416
gene_biotype: protein_coding
description:
  PFAM: PEP-utilizing protein; pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: dde:Dde_2080 phosphoenolpyruvate synthase.


ensembl_gene_id: DvMF_0417
symbol: DvMF_0417
gene_biotype: protein_coding
description:
  Carbamoyl-phosphate synthase L chain ATP-binding protein; PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; pyruvate carboxyltransferase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: dde:Dde_2081 pyruvate carboxylase.


ensembl_gene_id: DvMF_0418
symbol: DvMF_0418
gene_biotype: protein_coding
description:
  TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; KEGG: dde:Dde_2082 biotin--acetyl-CoA-carboxylase ligase.


ensembl_gene_id: DvMF_0419
symbol: DvMF_0419
gene_biotype: protein_coding
description:
  Metal dependent phosphohydrolase; KEGG: dde:Dde_2083 tRNA nucleotidyltransferase, putative; PFAM: Polynucleotide adenylyltransferase region; SMART: metal-dependent phosphohydrolase HD region; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.


ensembl_gene_id: DvMF_0420
symbol: DvMF_0420
gene_biotype: protein_coding
description:
  Inorganic diphosphatase; PFAM: phosphoesterase RecJ domain protein; DHHA2 domain protein; KEGG: dde:Dde_1778 putative manganese-dependent inorganic pyrophosphatase.


ensembl_gene_id: DvMF_0425
symbol: DvMF_0425
gene_biotype: protein_coding
description:
  Putative PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: dde:Dde_1773 putative PTS IIA-like nitrogen-regulatory protein PtsN.


ensembl_gene_id: DvMF_0426
symbol: hpf
gene_biotype: protein_coding
description:
  Sigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.


ensembl_gene_id: DvMF_0427
symbol: DvMF_0427
gene_biotype: protein_coding
description:
  RNA polymerase, sigma 54 subunit, RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: DvMF_0431
symbol: DvMF_0431
gene_biotype: protein_coding
description:
  TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: dde:Dde_1767 phosphatase KdsC.


ensembl_gene_id: DvMF_0432
symbol: kdsA
gene_biotype: protein_coding
description:
  TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: dde:Dde_1766 2-dehydro-3-deoxyphosphooctonate aldolase.


ensembl_gene_id: DvMF_0433
symbol: pyrG
gene_biotype: protein_coding
description:
  CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.


ensembl_gene_id: DvMF_0437
symbol: DvMF_0437
gene_biotype: protein_coding
description:
  TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; magnesium-translocating P-type ATPase; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: bph:Bphy_1097 magnesium-translocating P-type ATPase.


ensembl_gene_id: DvMF_0439
symbol: gpmI
gene_biotype: protein_coding
description:
  Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.


ensembl_gene_id: DvMF_0440
symbol: rsfS
gene_biotype: protein_coding
description:
  Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.


ensembl_gene_id: DvMF_0442
symbol: DvMF_0442
gene_biotype: protein_coding
description:
  Phenylacetate--CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).


ensembl_gene_id: DvMF_0445
symbol: DvMF_0445
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2085 iron-sulfur cluster-binding protein.


ensembl_gene_id: DvMF_0446
symbol: DvMF_0446
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_2086 putative glutamate synthase subunit beta.


ensembl_gene_id: DvMF_0448
symbol: DvMF_0448
gene_biotype: protein_coding
description:
  PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sfu:Sfum_3195 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: DvMF_0449
symbol: nadE
gene_biotype: protein_coding
description:
  NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.


ensembl_gene_id: DvMF_0450
symbol: dapB
gene_biotype: protein_coding
description:
  Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.


ensembl_gene_id: DvMF_0451
symbol: ligA
gene_biotype: protein_coding
description:
  DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.


ensembl_gene_id: DvMF_0453
symbol: DvMF_0453
gene_biotype: protein_coding
description:
  PFAM: TrkA-N domain protein; TrkA-C domain protein; Ion transport 2 domain protein; KEGG: dde:Dde_2095 TrkA family potassium uptake protein.


ensembl_gene_id: DvMF_0454
symbol: uvrB
gene_biotype: protein_coding
description:
  Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]


ensembl_gene_id: DvMF_0457
symbol: aat
gene_biotype: protein_coding
description:
  leucyl/phenylalanyl-tRNA/protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.


ensembl_gene_id: DvMF_0458
symbol: DvMF_0458
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_2099 ATPase; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; ATP-dependent Clp protease ATP-binding subunit clpA; SMART: AAA ATPase; Belongs to the ClpA/ClpB family.


ensembl_gene_id: DvMF_0459
symbol: clpS
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.


ensembl_gene_id: DvMF_0461
symbol: crcB
gene_biotype: protein_coding
description:
  Camphor resistance CrcB protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.


ensembl_gene_id: DvMF_0464
symbol: DvMF_0464
gene_biotype: protein_coding
description:
  Nitrite and sulphite reductase 4Fe-4S region; PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: mem:Memar_1210 nitrite and sulphite reductase 4Fe-4S region.


ensembl_gene_id: DvMF_0465
symbol: cheB
gene_biotype: protein_coding
description:
  Response regulator receiver modulated CheB methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.


ensembl_gene_id: DvMF_0466
symbol: DvMF_0466
gene_biotype: protein_coding
description:
  MCP methyltransferase, CheR-type; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.


ensembl_gene_id: DvMF_0467
symbol: DvMF_0467
gene_biotype: protein_coding
description:
  CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: dde:Dde_2106 CheA signal transduction histidine kinase.


ensembl_gene_id: DvMF_0468
symbol: DvMF_0468
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; KEGG: dde:Dde_2107 response regulator receiver domain-containing protein.


ensembl_gene_id: DvMF_0470
symbol: DvMF_0470
gene_biotype: protein_coding
description:
  TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; Heme NO binding domain protein; KEGG: dde:Dde_1752 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: DvMF_0471
symbol: radA
gene_biotype: protein_coding
description:
  DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.


ensembl_gene_id: DvMF_0473
symbol: DvMF_0473
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_2112 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.


ensembl_gene_id: DvMF_0474
symbol: DvMF_0474
gene_biotype: protein_coding
description:
  PFAM: GCN5-related N-acetyltransferase; KEGG: dde:Dde_2113 acetyltransferase; Belongs to the acetyltransferase family.


ensembl_gene_id: DvMF_0475
symbol: DvMF_0475
gene_biotype: protein_coding
description:
  PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: dde:Dde_2114 thioredoxin family protein.


ensembl_gene_id: DvMF_0476
symbol: DvMF_0476
gene_biotype: protein_coding
description:
  PFAM: dihydropteroate synthase DHPS; homocysteine S-methyltransferase; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: dde:Dde_2115 methionine synthase (B12-dependent).


ensembl_gene_id: DvMF_0477
symbol: DvMF_0477
gene_biotype: protein_coding
description:
  Putative RNA polymerase, sigma 70 family subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: DvMF_0478
symbol: DvMF_0478
gene_biotype: protein_coding
description:
  PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_2117 TPR repeat-containing protein.


ensembl_gene_id: DvMF_0481
symbol: DvMF_0481
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_2120 ribose-5-phosphate isomerase; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase.


ensembl_gene_id: DvMF_0482
symbol: cysS
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_2121 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M); Cysteinyl-tRNA synthetase class Ia; Belongs to the class-I aminoacyl-tRNA synthetase family.


ensembl_gene_id: DvMF_0483
symbol: DvMF_0483
gene_biotype: protein_coding
description:
  Peptidase M48 Ste24p; PFAM: TPR repeat-containing protein; peptidase M48 Ste24p; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_2122 TPR repeat-containing protein.


ensembl_gene_id: DvMF_0485
symbol: hslV
gene_biotype: protein_coding
description:
  20S proteasome A and B subunits; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.


ensembl_gene_id: DvMF_0486
symbol: ispE
gene_biotype: protein_coding
description:
  4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.


ensembl_gene_id: DvMF_0487
symbol: prs
gene_biotype: protein_coding
description:
  Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.


ensembl_gene_id: DvMF_0488
symbol: rplY
gene_biotype: protein_coding
description:
  Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.


ensembl_gene_id: DvMF_0489
symbol: pth
gene_biotype: protein_coding
description:
  Aminoacyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.


ensembl_gene_id: DvMF_0491
symbol: rho
gene_biotype: protein_coding
description:
  Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.


ensembl_gene_id: DvMF_0492
symbol: DvMF_0492
gene_biotype: protein_coding
description:
  PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: pna:Pnap_4517 bilirubin oxidase.


ensembl_gene_id: DvMF_0493
symbol: DvMF_0493
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_2050 diguanylate cyclase.


ensembl_gene_id: DvMF_0494
symbol: rpoD
gene_biotype: protein_coding
description:
  RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.


ensembl_gene_id: DvMF_0495
symbol: dnaG
gene_biotype: protein_coding
description:
  DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.


ensembl_gene_id: DvMF_0496
symbol: mutS2
gene_biotype: protein_coding
description:
  Smr protein/MutS2; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.


ensembl_gene_id: DvMF_0498
symbol: rpsU
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein S21; KEGG: dde:Dde_2056 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.


ensembl_gene_id: DvMF_0500
symbol: DvMF_0500
gene_biotype: protein_coding
description:
  Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.


ensembl_gene_id: DvMF_0501
symbol: rsmA
gene_biotype: protein_coding
description:
  Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.


ensembl_gene_id: DvMF_0503
symbol: DvMF_0503
gene_biotype: protein_coding
description:
  TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: dde:Dde_2063 elongation factor G.


ensembl_gene_id: DvMF_0506
symbol: DvMF_0506
gene_biotype: protein_coding
description:
  PFAM: PGAP1 family protein; KEGG: dde:Dde_1837 acetyltransferase and hydrolase with the alpha/beta hydrolase fold-like.


ensembl_gene_id: DvMF_0507
symbol: DvMF_0507
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1836 glycosyl transferase, group 1 family protein.


ensembl_gene_id: DvMF_0508
symbol: DvMF_0508
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1835 glycosyl transferase, group 1 family protein.


ensembl_gene_id: DvMF_0509
symbol: DvMF_0509
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_1834 diguanylate cyclase.


ensembl_gene_id: DvMF_0511
symbol: DvMF_0511
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sfu:Sfum_1907 transcriptional regulator, LysR family.


ensembl_gene_id: DvMF_0512
symbol: DvMF_0512
gene_biotype: protein_coding
description:
  Conserved integral membrane protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.


ensembl_gene_id: DvMF_0513
symbol: DvMF_0513
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: bce:BC4053 GntR family transcriptional regulator.


ensembl_gene_id: DvMF_0514
symbol: phnX
gene_biotype: protein_coding
description:
  Phosphonoacetaldehyde hydrolase; Involved in phosphonate degradation; Belongs to the HAD-like hydrolase superfamily. PhnX family.


ensembl_gene_id: DvMF_0515
symbol: DvMF_0515
gene_biotype: protein_coding
description:
  TIGRFAM: sulfoacetaldehyde acetyltransferase; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: dsy:DSY4746 sulfoacetaldehyde acetyltransferase; Belongs to the TPP enzyme family.


ensembl_gene_id: DvMF_0516
symbol: DvMF_0516
gene_biotype: protein_coding
description:
  PFAM: aminotransferase class-III; KEGG: dps:DP0541 aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: DvMF_0517
symbol: DvMF_0517
gene_biotype: protein_coding
description:
  TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; KEGG: dde:Dde_1553 L-alanine dehydrogenase; Belongs to the AlaDH/PNT family.


ensembl_gene_id: DvMF_0518
symbol: DvMF_0518
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mja:MJ0412 nitrate transporter protein (NrtC) homolog (CmpC).


ensembl_gene_id: DvMF_0519
symbol: DvMF_0519
gene_biotype: protein_coding
description:
  KEGG: vei:Veis_0768 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein.


ensembl_gene_id: DvMF_0520
symbol: DvMF_0520
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpt:Rpal_4641 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: DvMF_0521
symbol: DvMF_0521
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_1108 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: DvMF_0524
symbol: DvMF_0524
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_1831 nicotinate-nucleotide pyrophosphorylase [carboxylating]; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; Belongs to the NadC/ModD family.


ensembl_gene_id: DvMF_0525
symbol: DvMF_0525
gene_biotype: protein_coding
description:
  Quinolinate synthetase complex, A subunit; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.


ensembl_gene_id: DvMF_0527
symbol: DvMF_0527
gene_biotype: protein_coding
description:
  PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: wsu:WS0137 NCAIR mutase (PurE)-related protein.


ensembl_gene_id: DvMF_0528
symbol: DvMF_0528
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF111; KEGG: cbe:Cbei_0559 hypothetical protein; Belongs to the LarC family.


ensembl_gene_id: DvMF_0530
symbol: DvMF_0530
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: dps:DP1867 transcription regulator (AraC-type).


ensembl_gene_id: DvMF_0533
symbol: DvMF_0533
gene_biotype: protein_coding
description:
  Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).


ensembl_gene_id: DvMF_0536
symbol: DvMF_0536
gene_biotype: protein_coding
description:
  Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.


ensembl_gene_id: DvMF_0540
symbol: secF
gene_biotype: protein_coding
description:
  Protein-export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: DvMF_0541
symbol: secD
gene_biotype: protein_coding
description:
  Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.


ensembl_gene_id: DvMF_0542
symbol: yajC
gene_biotype: protein_coding
description:
  Preprotein translocase, YajC subunit; The SecYEG-SecDF-YajC-YidC holo-translocon (HTL) protein secretase/insertase is a supercomplex required for protein secretion, insertion of proteins into membranes, and assembly of membrane protein complexes. While the SecYEG complex is essential for assembly of a number of proteins and complexes, the SecDF-YajC-YidC subcomplex facilitates these functions.


ensembl_gene_id: DvMF_0543
symbol: DvMF_0543
gene_biotype: protein_coding
description:
  PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: amu:Amuc_0711 sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.


ensembl_gene_id: DvMF_0544
symbol: DvMF_0544
gene_biotype: protein_coding
description:
  PFAM: glutamate synthase alpha subunit domain protein; KEGG: dde:Dde_1816 glutamate synthase (NADPH) GltB3 subunit.


ensembl_gene_id: DvMF_0545
symbol: DvMF_0545
gene_biotype: protein_coding
description:
  PFAM: glutamine amidotransferase class-II; KEGG: dde:Dde_1815 glutamate synthase (NADPH) GltB1 subunit.


ensembl_gene_id: DvMF_0546
symbol: DvMF_0546
gene_biotype: protein_coding
description:
  Glutamate synthase (NADPH); PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; ferredoxin-dependent glutamate synthase; KEGG: dde:Dde_1814 glutamate synthase (NADPH) GltB2 subunit; Belongs to the glutamate synthase family.


ensembl_gene_id: DvMF_0548
symbol: mtaD
gene_biotype: protein_coding
description:
  Guanine deaminase; Catalyzes the deamination of 5-methylthioadenosine and S- adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine. Belongs to the metallo-dependent hydrolases superfamily. MTA/SAH deaminase family.


ensembl_gene_id: DvMF_0550
symbol: DvMF_0550
gene_biotype: protein_coding
description:
  PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: dde:Dde_1810 succinyl-diaminopimelate desuccinylase.


ensembl_gene_id: DvMF_0551
symbol: mnmG
gene_biotype: protein_coding
description:
  Glucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.


ensembl_gene_id: DvMF_0554
symbol: lnt
gene_biotype: protein_coding
description:
  Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.


ensembl_gene_id: DvMF_0555
symbol: prfB
gene_biotype: protein_coding
description:
  Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.


ensembl_gene_id: DvMF_0556
symbol: DvMF_0556
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_1801 diguanylate cyclase.


ensembl_gene_id: DvMF_0558
symbol: DvMF_0558
gene_biotype: protein_coding
description:
  PFAM: histone family protein DNA-binding protein; KEGG: dde:Dde_1799 histone-like DNA-binding protein; Belongs to the bacterial histone-like protein family.


ensembl_gene_id: DvMF_0561
symbol: dapF
gene_biotype: protein_coding
description:
  Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.


ensembl_gene_id: DvMF_0562
symbol: dapA
gene_biotype: protein_coding
description:
  Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).


ensembl_gene_id: DvMF_0563
symbol: DvMF_0563
gene_biotype: protein_coding
description:
  TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-4 domain protein; KEGG: dde:Dde_1665 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: DvMF_0566
symbol: DvMF_0566
gene_biotype: protein_coding
description:
  Peptidyl-prolyl cis-trans isomerase cyclophilin type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.


ensembl_gene_id: DvMF_0567
symbol: clpB
gene_biotype: protein_coding
description:
  ATP-dependent chaperone ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.


ensembl_gene_id: DvMF_0569
symbol: DvMF_0569
gene_biotype: protein_coding
description:
  PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: dde:Dde_1659 heat shock protein DnaJ-like.


ensembl_gene_id: DvMF_0571
symbol: DvMF_0571
gene_biotype: protein_coding
description:
  TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: bav:BAV1572 autotransporter.


ensembl_gene_id: DvMF_0572
symbol: DvMF_0572
gene_biotype: protein_coding
description:
  Threonine aldolase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: dde:Dde_1657 L-threonine aldolase.


ensembl_gene_id: DvMF_0573
symbol: DvMF_0573
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1656 glycosyl transferase, group 1 family protein.


ensembl_gene_id: DvMF_0576
symbol: DvMF_0576
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_1652 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region.


ensembl_gene_id: DvMF_0577
symbol: ybeY
gene_biotype: protein_coding
description:
  Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.


ensembl_gene_id: DvMF_0578
symbol: gatB
gene_biotype: protein_coding
description:
  glutamyl-tRNA(Gln) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.


ensembl_gene_id: DvMF_0581
symbol: nadK
gene_biotype: protein_coding
description:
  ATP-NAD/AcoX kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.


ensembl_gene_id: DvMF_0582
symbol: gmhA
gene_biotype: protein_coding
description:
  Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.


ensembl_gene_id: DvMF_0583
symbol: DvMF_0583
gene_biotype: protein_coding
description:
  TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: dde:Dde_2620 hypothetical protein.


ensembl_gene_id: DvMF_0584
symbol: hemC
gene_biotype: protein_coding
description:
  Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.


ensembl_gene_id: DvMF_0585
symbol: DvMF_0585
gene_biotype: protein_coding
description:
  PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: lip:LIC103 methyl-accepting chemotaxis protein.


ensembl_gene_id: DvMF_0586
symbol: DvMF_0586
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: fra:Francci3_0908 transcriptional regulator, XRE family.


ensembl_gene_id: DvMF_0592
symbol: DvMF_0592
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: dde:Dde_1647 major facilitator superfamily protein.


ensembl_gene_id: DvMF_0593
symbol: DvMF_0593
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cbe:Cbei_4835 4Fe-4S ferredoxin, iron-sulfur binding domain protein.


ensembl_gene_id: DvMF_0594
symbol: DvMF_0594
gene_biotype: protein_coding
description:
  TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: dde:Dde_1646 peptidase C56, PfpI.


ensembl_gene_id: DvMF_0595
symbol: DvMF_0595
gene_biotype: protein_coding
description:
  TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_3724 phosphonate ABC transporter permease.


ensembl_gene_id: DvMF_0596
symbol: DvMF_0596
gene_biotype: protein_coding
description:
  TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_3725 phosphonate ABC transporter inner membrane protein.


ensembl_gene_id: DvMF_0597
symbol: phnC
gene_biotype: protein_coding
description:
  Phosphonate ABC transporter, ATPase subunit; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.


ensembl_gene_id: DvMF_0598
symbol: DvMF_0598
gene_biotype: protein_coding
description:
  TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: dde:Dde_3730 phosphonate-binding periplasmic protein.


ensembl_gene_id: DvMF_0599
symbol: DvMF_0599
gene_biotype: protein_coding
description:
  TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dde:Dde_3732 HAD family hydrolase.


ensembl_gene_id: DvMF_0600
symbol: DvMF_0600
gene_biotype: protein_coding
description:
  TIGRFAM: degV family protein; PFAM: DegV family protein; Dak phosphatase; KEGG: dde:Dde_1644 DegV family protein.


ensembl_gene_id: DvMF_0603
symbol: DvMF_0603
gene_biotype: protein_coding
description:
  PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: dde:Dde_1639 2-oxoglutarate ferredoxin oxidoreductase subunit alpha.


ensembl_gene_id: DvMF_0604
symbol: DvMF_0604
gene_biotype: protein_coding
description:
  PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: dde:Dde_1638 2-oxoglutarate ferredoxin oxidoreductase subunit beta.


ensembl_gene_id: DvMF_0605
symbol: DvMF_0605
gene_biotype: protein_coding
description:
  PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: dde:Dde_1637 2-oxoglutarate ferredoxin oxidoreductase, gamma subunit.


ensembl_gene_id: DvMF_0608
symbol: DvMF_0608
gene_biotype: protein_coding
description:
  Transcriptional regulator, NifA subfamily, Fis Family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: dde:Dde_1635 Fis family transcriptional regulator.


ensembl_gene_id: DvMF_0609
symbol: DvMF_0609
gene_biotype: protein_coding
description:
  PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: sfu:Sfum_4076 pyruvate ferredoxin/flavodoxin oxidoreductase.


ensembl_gene_id: DvMF_0610
symbol: DvMF_0610
gene_biotype: protein_coding
description:
  Indolepyruvate ferredoxin oxidoreductase, alpha subunit; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.


ensembl_gene_id: DvMF_0612
symbol: proA
gene_biotype: protein_coding
description:
  Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.


ensembl_gene_id: DvMF_0613
symbol: nadD
gene_biotype: protein_coding
description:
  Nicotinate (nicotinamide) nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).


ensembl_gene_id: DvMF_0616
symbol: DvMF_0616
gene_biotype: protein_coding
description:
  Signal transduction histidine kinase, nitrogen specific, NtrB; KEGG: dde:Dde_1165 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Cache type 2 domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: DvMF_0617
symbol: DvMF_0617
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CBS domain containing protein; EAL domain protein; KEGG: dde:Dde_1628 diguanylate cyclase/phosphodiesterase.


ensembl_gene_id: DvMF_0619
symbol: DvMF_0619
gene_biotype: protein_coding
description:
  CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: dol:Dole_0871 CheA signal transduction histidine kinase.


ensembl_gene_id: DvMF_0621
symbol: DvMF_0621
gene_biotype: protein_coding
description:
  PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_1627 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: DvMF_0622
symbol: DvMF_0622
gene_biotype: protein_coding
description:
  TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: dde:Dde_0235 BadM/Rrf2 family transcriptional regulator.


ensembl_gene_id: DvMF_0623
symbol: DvMF_0623
gene_biotype: protein_coding
description:
  TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: dde:Dde_0224 BadM/Rrf2 family transcriptional regulator.


ensembl_gene_id: DvMF_0624
symbol: DvMF_0624
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_0223 oxidoreductase, putative.


ensembl_gene_id: DvMF_0626
symbol: DvMF_0626
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; KEGG: dde:Dde_0221 response regulator receiver domain-containing protein.


ensembl_gene_id: DvMF_0627
symbol: DvMF_0627
gene_biotype: protein_coding
description:
  PFAM: Sel1 domain protein repeat-containing protein; KEGG: dde:Dde_0220 Sel1 repeat-containing protein.


ensembl_gene_id: DvMF_0630
symbol: DvMF_0630
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU1162 ABC transporter, ATP-binding protein.


ensembl_gene_id: DvMF_0631
symbol: DvMF_0631
gene_biotype: protein_coding
description:
  TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: gsu:GSU1161 RND family efflux transporter MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: DvMF_0634
symbol: DvMF_0634
gene_biotype: protein_coding
description:
  PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: gur:Gura_1006 metal dependent phosphohydrolase.


ensembl_gene_id: DvMF_0635
symbol: DvMF_0635
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF182; KEGG: pth:PTH_0686 xanthine and CO dehydrogenases maturation factor.


ensembl_gene_id: DvMF_0639
symbol: DvMF_0639
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: gur:Gura_1001 methyltransferase type 11.


ensembl_gene_id: DvMF_0640
symbol: DvMF_0640
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: gur:Gura_0999 4Fe-4S ferredoxin, iron-sulfur binding domain protein.


ensembl_gene_id: DvMF_0641
symbol: DvMF_0641
gene_biotype: protein_coding
description:
  PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: dde:Dde_3539 aldehyde dehydrogenase, molybdenum-binding subunit apoprotein.


ensembl_gene_id: DvMF_0642
symbol: DvMF_0642
gene_biotype: protein_coding
description:
  Molybdopterin binding domain protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.


ensembl_gene_id: DvMF_0643
symbol: DvMF_0643
gene_biotype: protein_coding
description:
  Contains selenocysteine; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sfu:Sfum_3510 formate dehydrogenase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: DvMF_0645
symbol: DvMF_0645
gene_biotype: protein_coding
description:
  Formate dehydrogenase accessory protein; Necessary for formate dehydrogenase activity. Belongs to the FdhE family.


ensembl_gene_id: DvMF_0646
symbol: DvMF_0646
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_3513 formate dehydrogenase alpha subunit; TIGRFAM: formate dehydrogenase, alpha subunit; Contains selenocysteine; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region.


ensembl_gene_id: DvMF_0652
symbol: DvMF_0652
gene_biotype: protein_coding
description:
  Agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: hmo:HM1_2344 agmatine deiminase putative; Belongs to the agmatine deiminase family.


ensembl_gene_id: DvMF_0653
symbol: DvMF_0653
gene_biotype: protein_coding
description:
  TIGRFAM: N-carbamoylputrescine amidase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: ypb:YPTS_3343 N-carbamoylputrescine amidase.


ensembl_gene_id: DvMF_0655
symbol: DvMF_0655
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: lip:LI0076 sugar ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.


ensembl_gene_id: DvMF_0656
symbol: DvMF_0656
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 1; KEGG: lip:LI0077 probable extracellular solute-binding protein.


ensembl_gene_id: DvMF_0657
symbol: DvMF_0657
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lip:LI0078 inner membrane component of binding-protein-dependent transport system.


ensembl_gene_id: DvMF_0658
symbol: DvMF_0658
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_3304 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: DvMF_0661
symbol: DvMF_0661
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; TIGRFAM: PEP-CTERM system histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: dde:Dde_0849 periplasmic sensor signal transduction histidine kinase.


ensembl_gene_id: DvMF_0662
symbol: DvMF_0662
gene_biotype: protein_coding
description:
  Coenzyme F390 synthetase-like protein; KEGG: neu:NE0796 capsular polysaccharide biosynthesis protein CapK.


ensembl_gene_id: DvMF_0663
symbol: DvMF_0663
gene_biotype: protein_coding
description:
  Uncharacterized protein involved in methicillin resistance-like protein; KEGG: rci:RCIX258 hypothetical protein.


ensembl_gene_id: DvMF_0670
symbol: DvMF_0670
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_0850 two component Fis family transcriptional regulator; TIGRFAM: PEP-CTERM system response regulator; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase.


ensembl_gene_id: DvMF_0672
symbol: DvMF_0672
gene_biotype: protein_coding
description:
  TIGRFAM: eight transmembrane protein EpsH; PFAM: Eight transmembrane protein EpsH; KEGG: dde:Dde_0847 hypothetical protein.


ensembl_gene_id: DvMF_0675
symbol: DvMF_0675
gene_biotype: protein_coding
description:
  Acetyltransferase (isoleucine patch superfamily)-like protein; KEGG: scl:sce6563 hypothetical protein.


ensembl_gene_id: DvMF_0676
symbol: DvMF_0676
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0838 glycosyl transferase, group 1 family protein.


ensembl_gene_id: DvMF_0678
symbol: DvMF_0678
gene_biotype: protein_coding
description:
  PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: rru:Rru_A3093 membrane protein involved in the export of O-antigen and teichoic acid-like.


ensembl_gene_id: DvMF_0682
symbol: DvMF_0682
gene_biotype: protein_coding
description:
  PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: gur:Gura_2343 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: DvMF_0683
symbol: DvMF_0683
gene_biotype: protein_coding
description:
  TIGRFAM: FemAB-related protein, PEP-CTERM system-associated; KEGG: ppd:Ppro_2469 hypothetical protein.


ensembl_gene_id: DvMF_0684
symbol: DvMF_0684
gene_biotype: protein_coding
description:
  TIGRFAM: polysaccharide deactylase family protein, PEP-CTERM locus subfamily; PFAM: polysaccharide deacetylase; KEGG: ppd:Ppro_2470 polysaccharide deacetylase.


ensembl_gene_id: DvMF_0687
symbol: DvMF_0687
gene_biotype: protein_coding
description:
  TIGRFAM: capsular exopolysaccharide family; exopolysaccharide/PEPCTERM locus tyrosine autokinase; KEGG: dde:Dde_0832 protein-tyrosine kinase.


ensembl_gene_id: DvMF_0688
symbol: DvMF_0688
gene_biotype: protein_coding
description:
  TIGRFAM: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; PFAM: lipopolysaccharide biosynthesis protein; KEGG: dde:Dde_0831 chain length determinant family protein.


ensembl_gene_id: DvMF_0689
symbol: DvMF_0689
gene_biotype: protein_coding
description:
  TIGRFAM: polysaccharide export protein, PEP-CTERM sytem-associated; PFAM: polysaccharide export protein; KEGG: dde:Dde_0830 capsular polysaccharide transport protein.


ensembl_gene_id: DvMF_0690
symbol: DvMF_0690
gene_biotype: protein_coding
description:
  TIGRFAM: sugar transferase, PEP-CTERM system associated; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: dde:Dde_0829 sugar transferase involved in lipopolysaccharide synthesis-like.


ensembl_gene_id: DvMF_0691
symbol: DvMF_0691
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_0828 TPR repeat-containing protein; TIGRFAM: PEP-CTERM system TPR-repeat lipoprotein; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.


ensembl_gene_id: DvMF_0695
symbol: DvMF_0695
gene_biotype: protein_coding
description:
  TIGRFAM: CAAX prenyl protease-related protein; PFAM: Abortive infection protein; KEGG: dde:Dde_0824 CAAX amino terminal protease family protein.


ensembl_gene_id: DvMF_0698
symbol: DvMF_0698
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF214; KEGG: dde:Dde_0827 ABC transporter, permease protein, putative.


ensembl_gene_id: DvMF_0699
symbol: DvMF_0699
gene_biotype: protein_coding
description:
  Putative two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dde:Dde_0820 two component Fis family transcriptional regulator.


ensembl_gene_id: DvMF_0700
symbol: DvMF_0700
gene_biotype: protein_coding
description:
  Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dol:Dole_2401 two component, sigma54 specific, Fis family transcriptional regulator.


ensembl_gene_id: DvMF_0701
symbol: DvMF_0701
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dol:Dole_2392 histidine kinase.


ensembl_gene_id: DvMF_0705
symbol: DvMF_0705
gene_biotype: protein_coding
description:
  Pyruvate, water dikinase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: sfu:Sfum_0630 pyruvate, water dikinase.


ensembl_gene_id: DvMF_0708
symbol: DvMF_0708
gene_biotype: protein_coding
description:
  Pyruvate, water dikinase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; KEGG: sfu:Sfum_2666 pyruvate, water dikinase.


ensembl_gene_id: DvMF_0710
symbol: DvMF_0710
gene_biotype: protein_coding
description:
  Putative phage repressor; PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; KEGG: lip:LI0836 predicted transcriptional regulator.


ensembl_gene_id: DvMF_0713
symbol: DvMF_0713
gene_biotype: protein_coding
description:
  PFAM: Transposase-like Mu; KEGG: bvi:Bcep1808_1328 MuA-transposase/repressor protein CI, DNA-binding.


ensembl_gene_id: DvMF_0723
symbol: DvMF_0723
gene_biotype: protein_coding
description:
  PFAM: Lytic transglycosylase catalytic; KEGG: lip:LIC036 putative lytic murein transglycosylase precursor.


ensembl_gene_id: DvMF_0730
symbol: DvMF_0730
gene_biotype: protein_coding
description:
  TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: putative head morphogenesis protein SPP1 gp7; KEGG: cvi:CV_2138 hypothetical protein.


ensembl_gene_id: DvMF_0731
symbol: DvMF_0731
gene_biotype: protein_coding
description:
  TIGRFAM: phage virion morphogenesis protein; PFAM: virion morphogenesis (putative tail completion) protein; KEGG: rsq:Rsph17025_2099 phage virion morphogenesis protein.


ensembl_gene_id: DvMF_0746
symbol: DvMF_0746
gene_biotype: protein_coding
description:
  TIGRFAM: phage baseplate assembly protein V; PFAM: Mu Gp45 domain protein; KEGG: cvi:CV_0345 bacteriophage base plate protein.


ensembl_gene_id: DvMF_0756
symbol: DvMF_0756
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1596 glycosyl transferase, group 2 family protein.


ensembl_gene_id: DvMF_0757
symbol: DvMF_0757
gene_biotype: protein_coding
description:
  KEGG: cre:CHLREDRAFT_149841 hypothetical protein Pfam: Extensin_2 PROSITE: ALA_RICH GLN_RICH HIS_RICH PRO_RICH.


ensembl_gene_id: DvMF_0759
symbol: metG
gene_biotype: protein_coding
description:
  methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.


ensembl_gene_id: DvMF_0761
symbol: DvMF_0761
gene_biotype: protein_coding
description:
  TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dde:Dde_1591 hypothetical protein.


ensembl_gene_id: DvMF_0762
symbol: DvMF_0762
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1590 glycosyl transferase, group 2 family protein.


ensembl_gene_id: DvMF_0763
symbol: pfkA
gene_biotype: protein_coding
description:
  Diphosphate--fructose-6-phosphate 1-phosphotransferase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. PPi-dependent PFK group II subfamily. Atypical ATP-dependent clade 'X' sub-subfamily.


ensembl_gene_id: DvMF_0766
symbol: DvMF_0766
gene_biotype: protein_coding
description:
  PFAM: 2-nitropropane dioxygenase NPD; KEGG: lip:LI1075 dioxygenases related to 2-nitropropane dioxygenase.


ensembl_gene_id: DvMF_0767
symbol: xerC-2
gene_biotype: protein_coding
description:
  Integrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.


ensembl_gene_id: DvMF_0768
symbol: DvMF_0768
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_1584 response regulator receiver modulated diguanylate cyclase.


ensembl_gene_id: DvMF_0769
symbol: DvMF_0769
gene_biotype: protein_coding
description:
  TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; KEGG: dde:Dde_1583 putative signal transduction protein.


ensembl_gene_id: DvMF_0771
symbol: DvMF_0771
gene_biotype: protein_coding
description:
  TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: dde:Dde_1581 DNA processing protein DprA, putative.


ensembl_gene_id: DvMF_0774
symbol: DvMF_0774
gene_biotype: protein_coding
description:
  CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: dde:Dde_1577 CheA signal transduction histidine kinase.


ensembl_gene_id: DvMF_0775
symbol: DvMF_0775
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; KEGG: dde:Dde_1576 response regulator receiver domain-containing protein.


ensembl_gene_id: DvMF_0779
symbol: DvMF_0779
gene_biotype: protein_coding
description:
  PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; KEGG: dde:Dde_1572 heat repeat-containing PBS lyase.


ensembl_gene_id: DvMF_0783
symbol: DvMF_0783
gene_biotype: protein_coding
description:
  Glucose/sorbosone dehydrogenase-like protein; KEGG: tbd:Tbd_1726 L-sorbosone dehydrogenase, putative.


ensembl_gene_id: DvMF_0787
symbol: DvMF_0787
gene_biotype: protein_coding
description:
  (p)ppGpp synthetase I, SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.


ensembl_gene_id: DvMF_0788
symbol: DvMF_0788
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: lip:LI0169 ABC-type dipeptide transport system, periplasmic component.


ensembl_gene_id: DvMF_0789
symbol: DvMF_0789
gene_biotype: protein_coding
description:
  Non-specific serine/threonine protein kinase; KEGG: dde:Dde_1564 DEAD/DEAH box helicase-like; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases.


ensembl_gene_id: DvMF_0794
symbol: DvMF_0794
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: ote:Oter_3445 transcriptional regulator, XRE family.


ensembl_gene_id: DvMF_0797
symbol: thiE
gene_biotype: protein_coding
description:
  Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.


ensembl_gene_id: DvMF_0798
symbol: DvMF_0798
gene_biotype: protein_coding
description:
  TIGRFAM: thiamine biosynthesis protein ThiF; PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dde:Dde_1557 thiamine biosynthesis protein ThiF.


ensembl_gene_id: DvMF_0799
symbol: DvMF_0799
gene_biotype: protein_coding
description:
  TIGRFAM: thiazole biosynthesis protein ThiH; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; KEGG: dde:Dde_1556 thiamine biosynthesis protein ThiH.


ensembl_gene_id: DvMF_0800
symbol: thiG
gene_biotype: protein_coding
description:
  Thiazole biosynthesis family protein; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.


ensembl_gene_id: DvMF_0801
symbol: DvMF_0801
gene_biotype: protein_coding
description:
  TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: dde:Dde_1554 thiamine biosynthesis protein ThiS.


ensembl_gene_id: DvMF_0803
symbol: DvMF_0803
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_4593 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: DvMF_0806
symbol: DvMF_0806
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pau:PA14_21720 AraC family transcriptional regulator.


ensembl_gene_id: DvMF_0808
symbol: DvMF_0808
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: psb:Psyr_0649 helix-turn-helix, AraC type:AraC protein, arabinose-binding/dimerisation.


ensembl_gene_id: DvMF_0809
symbol: glpK
gene_biotype: protein_coding
description:
  Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.


ensembl_gene_id: DvMF_0810
symbol: DvMF_0810
gene_biotype: protein_coding
description:
  PFAM: major intrinsic protein; KEGG: dde:Dde_0409 glycerol uptake facilitator protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.


ensembl_gene_id: DvMF_0811
symbol: DvMF_0811
gene_biotype: protein_coding
description:
  PFAM: FAD dependent oxidoreductase; KEGG: dde:Dde_0408 glycerol-3-phosphate dehydrogenase, FAD-dependent; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.


ensembl_gene_id: DvMF_0812
symbol: DvMF_0812
gene_biotype: protein_coding
description:
  Transcriptional regulator, DeoR family; PFAM: putative sugar-binding domain protein; KEGG: dde:Dde_0407 transcriptional regulator, putative.


ensembl_gene_id: DvMF_0813
symbol: DvMF_0813
gene_biotype: protein_coding
description:
  TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: dde:Dde_1545 single-strand binding protein.


ensembl_gene_id: DvMF_0817
symbol: DvMF_0817
gene_biotype: protein_coding
description:
  Biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: dde:Dde_1541 pyruvate carboxylase.


ensembl_gene_id: DvMF_0821
symbol: DvMF_0821
gene_biotype: protein_coding
description:
  Purine nucleoside phosphorylase I, inosine and guanosine-specific; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.


ensembl_gene_id: DvMF_0822
symbol: DvMF_0822
gene_biotype: protein_coding
description:
  TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: lip:LI0145 GTP-binding protein LepA.


ensembl_gene_id: DvMF_0823
symbol: DvMF_0823
gene_biotype: protein_coding
description:
  Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dol:Dole_0427 two component, sigma54 specific, Fis family transcriptional regulator.


ensembl_gene_id: DvMF_0824
symbol: DvMF_0824
gene_biotype: protein_coding
description:
  Signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: dol:Dole_0426 signal transduction histidine kinase, nitrogen specific, NtrB.


ensembl_gene_id: DvMF_0827
symbol: DvMF_0827
gene_biotype: protein_coding
description:
  PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_1473 TPR repeat-containing protein.


ensembl_gene_id: DvMF_0831
symbol: DvMF_0831
gene_biotype: protein_coding
description:
  PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: ana:alr5216 probable hemolysin.


ensembl_gene_id: DvMF_0832
symbol: DvMF_0832
gene_biotype: protein_coding
description:
  Transcriptional regulator, TraR/DksA family; PFAM: zinc finger DksA/TraR C4-type; KEGG: sew:SeSA_A0973 C4-type zinc finger protein, DksA/TraR family.


ensembl_gene_id: DvMF_0833
symbol: cobD
gene_biotype: protein_coding
description:
  Cobalamin biosynthesis protein CbiB; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.


ensembl_gene_id: DvMF_0834
symbol: trmL
gene_biotype: protein_coding
description:
  tRNA/rRNA methyltransferase (SpoU); Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide.


ensembl_gene_id: DvMF_0835
symbol: DvMF_0835
gene_biotype: protein_coding
description:
  Beta-N-acetylhexosaminidase; PFAM: glycoside hydrolase family 3 domain protein; KEGG: dde:Dde_2559 beta-N-acetylhexosaminidase.


ensembl_gene_id: DvMF_0836
symbol: DvMF_0836
gene_biotype: protein_coding
description:
  PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: dde:Dde_2282 hydantoinase/oxoprolinase family protein.


ensembl_gene_id: DvMF_0837
symbol: DvMF_0837
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_2283 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; Belongs to the PdxA family.


ensembl_gene_id: DvMF_0840
symbol: glgB
gene_biotype: protein_coding
description:
  1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.


ensembl_gene_id: DvMF_0842
symbol: DvMF_0842
gene_biotype: protein_coding
description:
  PFAM: NUDIX hydrolase; KEGG: dde:Dde_2287 MutT/NUDIX family protein; Belongs to the Nudix hydrolase family.


ensembl_gene_id: DvMF_0844
symbol: DvMF_0844
gene_biotype: protein_coding
description:
  TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: dde:Dde_2289 translation factor SUA5; Belongs to the SUA5 family.


ensembl_gene_id: DvMF_0845
symbol: rlmH
gene_biotype: protein_coding
description:
  Protein of unknown function DUF163; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.


ensembl_gene_id: DvMF_0848
symbol: rsmG
gene_biotype: protein_coding
description:
  Glucose inhibited division protein; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.


ensembl_gene_id: DvMF_0854
symbol: DvMF_0854
gene_biotype: protein_coding
description:
  PFAM: Mammalian cell entry related domain protein; KEGG: dde:Dde_2299 putative ABC transport system substrate-binding protein.


ensembl_gene_id: DvMF_0855
symbol: DvMF_0855
gene_biotype: protein_coding
description:
  PFAM: toluene tolerance family protein; KEGG: lip:LI0234 ABC-type transport system involved in resistance to organic solvents, auxiliary component.


ensembl_gene_id: DvMF_0860
symbol: DvMF_0860
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: dde:Dde_2306 extracellular solute-binding protein.


ensembl_gene_id: DvMF_0861
symbol: DvMF_0861
gene_biotype: protein_coding
description:
  TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_2307 amino acid ABC transporter permease.


ensembl_gene_id: DvMF_0864
symbol: glnD
gene_biotype: protein_coding
description:
  UTP-GlnB uridylyltransferase, GlnD; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism.


ensembl_gene_id: DvMF_0865
symbol: DvMF_0865
gene_biotype: protein_coding
description:
  PFAM: nitrogen regulatory protein P-II; KEGG: dde:Dde_2310 nitrogen regulatory protein P-II (GlnB, GlnK); Belongs to the P(II) protein family.


ensembl_gene_id: DvMF_0866
symbol: DvMF_0866
gene_biotype: protein_coding
description:
  TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: dde:Dde_2311 ammonium transporter.


ensembl_gene_id: DvMF_0867
symbol: tpx
gene_biotype: protein_coding
description:
  Redoxin domain protein; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.


ensembl_gene_id: DvMF_0870
symbol: DvMF_0870
gene_biotype: protein_coding
description:
  PFAM: RNA binding S1 domain protein; SMART: Helix-hairpin-helix DNA-binding class 1; Resolvase RNase H domain protein fold; KEGG: dde:Dde_2316 RNA-binding domain-containing protein.


ensembl_gene_id: DvMF_0874
symbol: DvMF_0874
gene_biotype: protein_coding
description:
  PFAM: sodium:neurotransmitter symporter; KEGG: dde:Dde_2371 sodium-dependent symporter family protein.


ensembl_gene_id: DvMF_0876
symbol: recA
gene_biotype: protein_coding
description:
  recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.


ensembl_gene_id: DvMF_0877
symbol: alaS
gene_biotype: protein_coding
description:
  alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.


ensembl_gene_id: DvMF_0878
symbol: DvMF_0878
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function UPF0052 and CofD; KEGG: sit:TM1040_2627 protein of unknown function UPF0052 and CofD.


ensembl_gene_id: DvMF_0881
symbol: pstB
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, ATPase subunit; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.


ensembl_gene_id: DvMF_0882
symbol: DvMF_0882
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dde:Dde_2387 two component transcriptional regulator.


ensembl_gene_id: DvMF_0885
symbol: DvMF_0885
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: dde:Dde_2390 dissimilatory sulfite reductase (desulfoviridin) alpha and beta subunits-like.


ensembl_gene_id: DvMF_0886
symbol: mnmE
gene_biotype: protein_coding
description:
  tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.


ensembl_gene_id: DvMF_0887
symbol: DvMF_0887
gene_biotype: protein_coding
description:
  PFAM: single-stranded nucleic acid binding R3H domain protein; KEGG: dde:Dde_2393 single-stranded nucleic acid binding R3H.


ensembl_gene_id: DvMF_0888
symbol: yidC
gene_biotype: protein_coding
description:
  60 kDa inner membrane insertion protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.


ensembl_gene_id: DvMF_0889
symbol: DvMF_0889
gene_biotype: protein_coding
description:
  Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.


ensembl_gene_id: DvMF_0890
symbol: rnpA
gene_biotype: protein_coding
description:
  Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.


ensembl_gene_id: DvMF_0891
symbol: rpmH
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein L34; KEGG: pca:Pcar_3146 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.


ensembl_gene_id: DvMF_0897
symbol: nfo
gene_biotype: protein_coding
description:
  Apurinic endonuclease Apn1; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.


ensembl_gene_id: DvMF_0898
symbol: DvMF_0898
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: dde:Dde_1463 mercuric reductase, putative.


ensembl_gene_id: DvMF_0904
symbol: DvMF_0904
gene_biotype: protein_coding
description:
  2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.


ensembl_gene_id: DvMF_0907
symbol: DvMF_0907
gene_biotype: protein_coding
description:
  NADH dehydrogenase (ubiquinone); PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_0642 NADH dehydrogenase.


ensembl_gene_id: DvMF_0908
symbol: hisC
gene_biotype: protein_coding
description:
  TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: dde:Dde_1453 histidinol phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.


ensembl_gene_id: DvMF_0910
symbol: DvMF_0910
gene_biotype: protein_coding
description:
  TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: drm:Dred_1317 uracil-xanthine permease.


ensembl_gene_id: DvMF_0911
symbol: upp
gene_biotype: protein_coding
description:
  Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.


ensembl_gene_id: DvMF_0912
symbol: coaE
gene_biotype: protein_coding
description:
  Pseudouridine synthase, RluA family; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.


ensembl_gene_id: DvMF_0917
symbol: DvMF_0917
gene_biotype: protein_coding
description:
  PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: dde:Dde_3246 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: DvMF_0920
symbol: DvMF_0920
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_2593 oligopeptide ABC transporter, permease protein.


ensembl_gene_id: DvMF_0921
symbol: DvMF_0921
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_2594 oligopeptide ABC transporter, permease protein.


ensembl_gene_id: DvMF_0925
symbol: rnr
gene_biotype: protein_coding
description:
  Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.


ensembl_gene_id: DvMF_0926
symbol: lpxK
gene_biotype: protein_coding
description:
  Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).


ensembl_gene_id: DvMF_0927
symbol: DvMF_0927
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function UPF0005; KEGG: dde:Dde_2601 membrane protein, putaive; Belongs to the BI1 family.


ensembl_gene_id: DvMF_0929
symbol: DvMF_0929
gene_biotype: protein_coding
description:
  Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; KEGG: pca:Pcar_0664 putative response regulator protein.


ensembl_gene_id: DvMF_0931
symbol: DvMF_0931
gene_biotype: protein_coding
description:
  PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sea:SeAg_B0650 molybdopterin-containing oxidoreductase catalytic subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: DvMF_0932
symbol: DvMF_0932
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: stm:STM0612 putative hydrogenase protein.


ensembl_gene_id: DvMF_0937
symbol: DvMF_0937
gene_biotype: protein_coding
description:
  PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: dde:Dde_3636 ferredoxin--NADP(+) reductase subunit alpha.


ensembl_gene_id: DvMF_0938
symbol: DvMF_0938
gene_biotype: protein_coding
description:
  TIGRFAM: glutamate synthase (NADPH), homotetrameric; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_1250 putative oxidoreductase.


ensembl_gene_id: DvMF_0940
symbol: DvMF_0940
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_1057 histidinol-phosphate phosphatase; TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; Belongs to the PHP hydrolase family. HisK subfamily.


ensembl_gene_id: DvMF_0942
symbol: trpF
gene_biotype: protein_coding
description:
  PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: dde:Dde_1054 phosphoribosylanthranilate isomerase; Belongs to the TrpF family.


ensembl_gene_id: DvMF_0944
symbol: DvMF_0944
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF6 transmembrane; KEGG: pmy:Pmen_3089 protein of unknown function DUF6, transmembrane.


ensembl_gene_id: DvMF_0945
symbol: DvMF_0945
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_1052 iron-sulfur cluster-binding protein.


ensembl_gene_id: DvMF_0946
symbol: htpX
gene_biotype: protein_coding
description:
  PFAM: peptidase M48 Ste24p; KEGG: dde:Dde_1051 HtpX-2 peptidase; Belongs to the peptidase M48B family.


ensembl_gene_id: DvMF_0947
symbol: DvMF_0947
gene_biotype: protein_coding
description:
  PFAM: thioesterase superfamily protein; KEGG: dde:Dde_1049 phenylacetic acid degradation-related protein.


ensembl_gene_id: DvMF_0951
symbol: ftsZ
gene_biotype: protein_coding
description:
  Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.


ensembl_gene_id: DvMF_0952
symbol: ftsA
gene_biotype: protein_coding
description:
  Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.


ensembl_gene_id: DvMF_0956
symbol: murG
gene_biotype: protein_coding
description:
  Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.


ensembl_gene_id: DvMF_0957
symbol: DvMF_0957
gene_biotype: protein_coding
description:
  TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: dde:Dde_1041 cell cycle protein FtsW; Belongs to the SEDS family.


ensembl_gene_id: DvMF_0958
symbol: murD
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoylalanine/D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.


ensembl_gene_id: DvMF_0959
symbol: mraY
gene_biotype: protein_coding
description:
  phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.


ensembl_gene_id: DvMF_0960
symbol: murE
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramyl-tripeptide synthetase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.


ensembl_gene_id: DvMF_0961
symbol: DvMF_0961
gene_biotype: protein_coding
description:
  Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein; KEGG: dde:Dde_1036 peptidoglycan glycosyltransferase.


ensembl_gene_id: DvMF_0963
symbol: rsmH
gene_biotype: protein_coding
description:
  S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.


ensembl_gene_id: DvMF_0964
symbol: mraZ
gene_biotype: protein_coding
description:
  TIGRFAM: MraZ protein; PFAM: protein of unknown function UPF0040; KEGG: dde:Dde_1033 cell division protein MraZ; Belongs to the MraZ family.


ensembl_gene_id: DvMF_0965
symbol: DvMF_0965
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_1032 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: HpcH/HpaI aldolase; Pyruvate kinase barrel; Pyruvate kinase alpha/beta; Belongs to the pyruvate kinase family.


ensembl_gene_id: DvMF_0966
symbol: DvMF_0966
gene_biotype: protein_coding
description:
  PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_1031 metal dependent phosphohydrolase.


ensembl_gene_id: DvMF_0967
symbol: DvMF_0967
gene_biotype: protein_coding
description:
  Putative transcriptional regulator, XRE family; PFAM: CBS domain containing protein; KEGG: dde:Dde_2604 CBS domain-containing protein.


ensembl_gene_id: DvMF_0969
symbol: rplM
gene_biotype: protein_coding
description:
  Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.


ensembl_gene_id: DvMF_0970
symbol: rpsI
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein S9; KEGG: dde:Dde_2608 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.


ensembl_gene_id: DvMF_0971
symbol: aroK
gene_biotype: protein_coding
description:
  Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.


ensembl_gene_id: DvMF_0975
symbol: pgk
gene_biotype: protein_coding
description:
  PFAM: phosphoglycerate kinase; KEGG: aeh:Mlg_2842 phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.


ensembl_gene_id: DvMF_0976
symbol: DvMF_0976
gene_biotype: protein_coding
description:
  Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.


ensembl_gene_id: DvMF_0977
symbol: DvMF_0977
gene_biotype: protein_coding
description:
  PFAM: ribulose-phosphate 3-epimerase; KEGG: dde:Dde_2632 ribulose-5-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.


ensembl_gene_id: DvMF_0979
symbol: pheT
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_2634 phenylalanyl-tRNA synthetase beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.


ensembl_gene_id: DvMF_0980
symbol: pheS
gene_biotype: protein_coding
description:
  TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; KEGG: dde:Dde_2635 phenylalanyl-tRNA synthetase, alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.


ensembl_gene_id: DvMF_0981
symbol: rplT
gene_biotype: protein_coding
description:
  Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.


ensembl_gene_id: DvMF_0982
symbol: rpmI
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein L35; KEGG: dde:Dde_2637 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.


ensembl_gene_id: DvMF_0983
symbol: infC
gene_biotype: protein_coding
description:
  Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.


ensembl_gene_id: DvMF_0984
symbol: thrS
gene_biotype: protein_coding
description:
  threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). Also edits incorrectly charged L-seryl-tRNA(Thr).


ensembl_gene_id: DvMF_0985
symbol: kup
gene_biotype: protein_coding
description:
  K potassium transporter; Transport of potassium into the cell; Belongs to the HAK/KUP transporter (TC 2.A.72) family.


ensembl_gene_id: DvMF_0986
symbol: DvMF_0986
gene_biotype: protein_coding
description:
  PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: gbm:Gbem_2040 2-hydroxyglutaryl-CoA dehydratase D-component.


ensembl_gene_id: DvMF_0987
symbol: DvMF_0987
gene_biotype: protein_coding
description:
  TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: gsu:GSU2520 (R)-2-hydroxyglutaryl-CoA dehydratase activator.


ensembl_gene_id: DvMF_0989
symbol: DvMF_0989
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2642 iron-sulfur cluster-binding protein.


ensembl_gene_id: DvMF_0990
symbol: DvMF_0990
gene_biotype: protein_coding
description:
  PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_1164 alcohol dehydrogenase, iron-containing.


ensembl_gene_id: DvMF_0991
symbol: DvMF_0991
gene_biotype: protein_coding
description:
  Signal transduction histidine kinase, nitrogen specific, NtrB; KEGG: dde:Dde_0558 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: DvMF_0993
symbol: DvMF_0993
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: dde:Dde_2644 Crp/FNR family transcriptional regulator.


ensembl_gene_id: DvMF_0995
symbol: DvMF_0995
gene_biotype: protein_coding
description:
  PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: pth:PTH_0998 HD-GYP domain.


ensembl_gene_id: DvMF_0996
symbol: gltX
gene_biotype: protein_coding
description:
  glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).


ensembl_gene_id: DvMF_0999
symbol: DvMF_0999
gene_biotype: protein_coding
description:
  TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: dde:Dde_2651 MATE efflux family protein.


ensembl_gene_id: DvMF_1000
symbol: birA
gene_biotype: protein_coding
description:
  biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.


ensembl_gene_id: DvMF_1001
symbol: bioB
gene_biotype: protein_coding
description:
  Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.


ensembl_gene_id: DvMF_1002
symbol: bioA
gene_biotype: protein_coding
description:
  Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily.


ensembl_gene_id: DvMF_1004
symbol: DvMF_1004
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dde:Dde_2658 short chain dehydrogenase/reductase family oxidoreductase.


ensembl_gene_id: DvMF_1006
symbol: DvMF_1006
gene_biotype: protein_coding
description:
  PFAM: Beta-ketoacyl synthase; KEGG: dde:Dde_2660 beta-ketoacyl synthase, putative; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.


ensembl_gene_id: DvMF_1009
symbol: bioD
gene_biotype: protein_coding
description:
  Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.


ensembl_gene_id: DvMF_1012
symbol: DvMF_1012
gene_biotype: protein_coding
description:
  Amidohydrolase; KEGG: dde:Dde_2667 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein.


ensembl_gene_id: DvMF_1013
symbol: DvMF_1013
gene_biotype: protein_coding
description:
  PFAM: peptidylprolyl isomerase FKBP-type; KEGG: dde:Dde_2668 peptidyl-prolyl cis-trans isomerase, FKBP-type.


ensembl_gene_id: DvMF_1014
symbol: DvMF_1014
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: dde:Dde_0886 diguanylate cyclase.


ensembl_gene_id: DvMF_1015
symbol: DvMF_1015
gene_biotype: protein_coding
description:
  Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.


ensembl_gene_id: DvMF_1019
symbol: DvMF_1019
gene_biotype: protein_coding
description:
  PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: dde:Dde_1186 M20/M25/M40 family peptidase.


ensembl_gene_id: DvMF_1020
symbol: DvMF_1020
gene_biotype: protein_coding
description:
  KEGG: mxa:MXAN_4665 oligopeptide/dipeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: DvMF_1021
symbol: DvMF_1021
gene_biotype: protein_coding
description:
  PFAM: regulatory protein LuxR; response regulator receiver; KEGG: dde:Dde_2674 two component LuxR family transcriptional regulator.


ensembl_gene_id: DvMF_1027
symbol: DvMF_1027
gene_biotype: protein_coding
description:
  PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: dol:Dole_1406 type II and III secretion system protein.


ensembl_gene_id: DvMF_1028
symbol: DvMF_1028
gene_biotype: protein_coding
description:
  PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: dol:Dole_1408 type II secretion system protein E.


ensembl_gene_id: DvMF_1031
symbol: DvMF_1031
gene_biotype: protein_coding
description:
  KEGG: csc:Csac_1061 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase.


ensembl_gene_id: DvMF_1037
symbol: DvMF_1037
gene_biotype: protein_coding
description:
  Peptidase A24A domain protein; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.


ensembl_gene_id: DvMF_1038
symbol: DvMF_1038
gene_biotype: protein_coding
description:
  Twitching motility protein; KEGG: sat:SYN_00125 pili retraction protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase.


ensembl_gene_id: DvMF_1040
symbol: DvMF_1040
gene_biotype: protein_coding
description:
  PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: dde:Dde_1059 PhoH-related protein.


ensembl_gene_id: DvMF_1041
symbol: mtgA
gene_biotype: protein_coding
description:
  Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.


ensembl_gene_id: DvMF_1043
symbol: DvMF_1043
gene_biotype: protein_coding
description:
  PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dde:Dde_0675 glycine/betaine/L-proline ABC transporter, periplasmic-binding protein.


ensembl_gene_id: DvMF_1044
symbol: DvMF_1044
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0674 glycine/betaine/L-proline ABC transporter, permease protein.


ensembl_gene_id: DvMF_1045
symbol: DvMF_1045
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_0673 glycine betaine/L-proline transport ATP binding subunit; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: DvMF_1046
symbol: DvMF_1046
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: afu:AF2409 iron-sulfur cluster binding protein.


ensembl_gene_id: DvMF_1049
symbol: DvMF_1049
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: scl:sce4660 permease of the major facilitator superfamily.


ensembl_gene_id: DvMF_1051
symbol: DvMF_1051
gene_biotype: protein_coding
description:
  PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_1288 TPR repeat-containing protein.


ensembl_gene_id: DvMF_1052
symbol: DvMF_1052
gene_biotype: protein_coding
description:
  Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; KEGG: lip:LI0552 signal transduction histidine kinase.


ensembl_gene_id: DvMF_1057
symbol: DvMF_1057
gene_biotype: protein_coding
description:
  PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: glo:Glov_0461 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: DvMF_1058
symbol: DvMF_1058
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1281 putative ABC transporter ATP-binding protein.


ensembl_gene_id: DvMF_1059
symbol: DvMF_1059
gene_biotype: protein_coding
description:
  Putative PAS/PAC sensor protein; PFAM: Hemerythrin HHE cation binding domain protein; PAS fold-4 domain protein; Domain of unknown function DUF1858; KEGG: afw:Anae109_1669 hemerythrin HHE cation binding domain protein.


ensembl_gene_id: DvMF_1060
symbol: DvMF_1060
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_1322 methyl-accepting chemotaxis sensory transducer; TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: DvMF_1083
symbol: DvMF_1083
gene_biotype: protein_coding
description:
  PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_1168 TPR repeat-containing protein.


ensembl_gene_id: DvMF_1088
symbol: DvMF_1088
gene_biotype: protein_coding
description:
  Signal transduction histidine kinase, nitrogen specific, NtrB; KEGG: dde:Dde_1071 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: DvMF_1089
symbol: DvMF_1089
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_1071 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: DvMF_1091
symbol: DvMF_1091
gene_biotype: protein_coding
description:
  PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: dde:Dde_1155 hypothetical protein.


ensembl_gene_id: DvMF_1094
symbol: DvMF_1094
gene_biotype: protein_coding
description:
  Putative phage repressor; PFAM: peptidase S24 and S26 domain protein; KEGG: dde:Dde_1158 transcriptional regulator, putative.


ensembl_gene_id: DvMF_1096
symbol: DvMF_1096
gene_biotype: protein_coding
description:
  Multi-sensor hybrid histidine kinase; KEGG: mag:amb1841 hypothetical protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.


ensembl_gene_id: DvMF_1097
symbol: DvMF_1097
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: mag:amb4144 response regulator.


ensembl_gene_id: DvMF_1099
symbol: DvMF_1099
gene_biotype: protein_coding
description:
  TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: gur:Gura_2706 drug resistance transporter, EmrB/QacA subfamily.


ensembl_gene_id: DvMF_1100
symbol: DvMF_1100
gene_biotype: protein_coding
description:
  PFAM: secretion protein HlyD family protein; KEGG: gbe:GbCGDNIH1_1724 multidrug resistance protein A.


ensembl_gene_id: DvMF_1101
symbol: DvMF_1101
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_0241 extracellular solute-binding protein.


ensembl_gene_id: DvMF_1102
symbol: DvMF_1102
gene_biotype: protein_coding
description:
  Putative PAS/PAC sensor protein; KEGG: gme:Gmet_0701 cache sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; Cache type 2 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.


ensembl_gene_id: DvMF_1103
symbol: DvMF_1103
gene_biotype: protein_coding
description:
  PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sat:SYN_01301 fog:tpr repeat protein.


ensembl_gene_id: DvMF_1109
symbol: DvMF_1109
gene_biotype: protein_coding
description:
  PFAM: sodium/calcium exchanger membrane region; KEGG: cak:Caul_2287 sodium/calcium exchanger membrane region.


ensembl_gene_id: DvMF_1114
symbol: DvMF_1114
gene_biotype: protein_coding
description:
  PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Nitrate and nitrite sensing domain protein; KEGG: lip:LIC103 methyl-accepting chemotaxis protein.


ensembl_gene_id: DvMF_1115
symbol: DvMF_1115
gene_biotype: protein_coding
description:
  PFAM: thioesterase superfamily protein; KEGG: dde:Dde_2647 phenylacetic acid degradation-related protein.


ensembl_gene_id: DvMF_1118
symbol: DvMF_1118
gene_biotype: protein_coding
description:
  PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_1650 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: DvMF_1119
symbol: DvMF_1119
gene_biotype: protein_coding
description:
  Sodium/hydrogen exchanger; PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: dol:Dole_0855 sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.


ensembl_gene_id: DvMF_1122
symbol: DvMF_1122
gene_biotype: protein_coding
description:
  Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: sfu:Sfum_4061 peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Belongs to the peptidase S11 family.


ensembl_gene_id: DvMF_1123
symbol: DvMF_1123
gene_biotype: protein_coding
description:
  TIGRFAM: queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: mxa:MXAN_6868 putative 6-pyruvoyl tetrahydrobiopterin synthase.


ensembl_gene_id: DvMF_1124
symbol: queE
gene_biotype: protein_coding
description:
  Radical SAM domain protein; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.


ensembl_gene_id: DvMF_1125
symbol: queC
gene_biotype: protein_coding
description:
  exsB protein; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.


ensembl_gene_id: DvMF_1127
symbol: DvMF_1127
gene_biotype: protein_coding
description:
  TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tpe:Tpen_1126 succinate dehydrogenase and fumarate reductase iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.


ensembl_gene_id: DvMF_1128
symbol: DvMF_1128
gene_biotype: protein_coding
description:
  PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: gbm:Gbem_1948 YbaK/prolyl-tRNA synthetase associated region.


ensembl_gene_id: DvMF_1129
symbol: DvMF_1129
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: dde:Dde_0977 two component LuxR family transcriptional regulator.


ensembl_gene_id: DvMF_1131
symbol: DvMF_1131
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ote:Oter_3856 response regulator receiver sensor signal transduction histidine kinase.


ensembl_gene_id: DvMF_1134
symbol: DvMF_1134
gene_biotype: protein_coding
description:
  TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: dde:Dde_2715 single-stranded-DNA-specific exonuclease RecJ.


ensembl_gene_id: DvMF_1135
symbol: DvMF_1135
gene_biotype: protein_coding
description:
  PFAM: metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; KEGG: dde:Dde_2716 putative signal transduction protein.


ensembl_gene_id: DvMF_1137
symbol: pyrF
gene_biotype: protein_coding
description:
  Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.


ensembl_gene_id: DvMF_1139
symbol: DvMF_1139
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF370; KEGG: dde:Dde_2720 hypothetical protein; Belongs to the RemA family.


ensembl_gene_id: DvMF_1140
symbol: DvMF_1140
gene_biotype: protein_coding
description:
  PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: dde:Dde_2721 hypothetical protein.


ensembl_gene_id: DvMF_1141
symbol: DvMF_1141
gene_biotype: protein_coding
description:
  KEGG: mag:amb1956 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: DvMF_1143
symbol: DvMF_1143
gene_biotype: protein_coding
description:
  Flavodoxin; Low-potential electron donor to a number of redox enzymes; Belongs to the flavodoxin family.


ensembl_gene_id: DvMF_1147
symbol: DvMF_1147
gene_biotype: protein_coding
description:
  L-lactate permease family protein, putative; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.


ensembl_gene_id: DvMF_1148
symbol: DvMF_1148
gene_biotype: protein_coding
description:
  PFAM: TrkA-N domain protein; TrkA-C domain protein; Ion transport 2 domain protein; KEGG: dol:Dole_0161 TrkA domain-containing protein.


ensembl_gene_id: DvMF_1150
symbol: DvMF_1150
gene_biotype: protein_coding
description:
  Alkylhydroperoxidase like protein, AhpD family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.


ensembl_gene_id: DvMF_1152
symbol: DvMF_1152
gene_biotype: protein_coding
description:
  PFAM: Domain of unkown function DUF1786 putative pyruvate format-lyase activating enzyme; KEGG: dde:Dde_0971 hypothetical protein.


ensembl_gene_id: DvMF_1155
symbol: trmJ
gene_biotype: protein_coding
description:
  RNA methyltransferase, TrmH family, group 1; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA.


ensembl_gene_id: DvMF_1156
symbol: DvMF_1156
gene_biotype: protein_coding
description:
  PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-4 domain protein; PAS fold domain protein; KEGG: dde:Dde_2411 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: DvMF_1157
symbol: DvMF_1157
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_1421 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: metal-dependent phosphohydrolase HD sub domain; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: DvMF_1158
symbol: DvMF_1158
gene_biotype: protein_coding
description:
  PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: dde:Dde_1420 hypothetical protein.


ensembl_gene_id: DvMF_1159
symbol: DvMF_1159
gene_biotype: protein_coding
description:
  TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: dde:Dde_1419 type I secretion membrane fusion protein, HlyD.


ensembl_gene_id: DvMF_1160
symbol: DvMF_1160
gene_biotype: protein_coding
description:
  Cyclic nucleotide-binding protein; KEGG: dde:Dde_1418 ATPase; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase.


ensembl_gene_id: DvMF_1161
symbol: DvMF_1161
gene_biotype: protein_coding
description:
  PFAM: Hemolysin-type calcium-binding region; KEGG: rso:RS05070 putative hemagglutinin/hemolysin-related protein.


ensembl_gene_id: DvMF_1164
symbol: DvMF_1164
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: sfu:Sfum_3103 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: DvMF_1165
symbol: DvMF_1165
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: sfu:Sfum_3104 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: DvMF_1166
symbol: DvMF_1166
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: sfu:Sfum_3105 extracellular ligand-binding receptor.


ensembl_gene_id: DvMF_1170
symbol: DvMF_1170
gene_biotype: protein_coding
description:
  PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mag:amb4555 NADPH:quinone reductase and related Zn-dependent oxidoreductase.


ensembl_gene_id: DvMF_1174
symbol: cbiD
gene_biotype: protein_coding
description:
  Cobalamin (vitamin B12) biosynthesis CbiD protein; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.


ensembl_gene_id: DvMF_1175
symbol: DvMF_1175
gene_biotype: protein_coding
description:
  TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Protein of unknown function methylase putative; KEGG: dde:Dde_0803 precorrin-6Y C5,15-methyltransferase (decarboxylating).


ensembl_gene_id: DvMF_1176
symbol: DvMF_1176
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 3; KEGG: hch:HCH_04060 amino acid ABC transporter periplasmic protein.


ensembl_gene_id: DvMF_1177
symbol: DvMF_1177
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_0801 precorrin-4 C11-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.


ensembl_gene_id: DvMF_1181
symbol: glmU
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine pyrophosphorylase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. In the C-terminal section; belongs to the transferase hexapeptide repeat family.


ensembl_gene_id: DvMF_1184
symbol: rny
gene_biotype: protein_coding
description:
  RNA binding metal dependent phosphohydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.


ensembl_gene_id: DvMF_1187
symbol: mqnD
gene_biotype: protein_coding
description:
  Protein of unknown function DUF191; Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2); Belongs to the MqnA/MqnD family. MqnD subfamily.


ensembl_gene_id: DvMF_1188
symbol: mqnE
gene_biotype: protein_coding
description:
  Radical SAM domain protein; Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3-[(1-carboxyvinyl)oxy]benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate.


ensembl_gene_id: DvMF_1189
symbol: mqnC
gene_biotype: protein_coding
description:
  Radical SAM domain protein; Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2).


ensembl_gene_id: DvMF_1190
symbol: mqnA
gene_biotype: protein_coding
description:
  Protein of unknown function DUF178; Catalyzes the dehydration of chorismate into 3-[(1- carboxyvinyl)oxy]benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2).


ensembl_gene_id: DvMF_1194
symbol: grpE
gene_biotype: protein_coding
description:
  GrpE protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent i [...]


ensembl_gene_id: DvMF_1195
symbol: hrcA
gene_biotype: protein_coding
description:
  Heat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons.


ensembl_gene_id: DvMF_1196
symbol: DvMF_1196
gene_biotype: protein_coding
description:
  TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; KEGG: dde:Dde_0762 dissimilatory sulfite reductase, gamma subunit.


ensembl_gene_id: DvMF_1200
symbol: DvMF_1200
gene_biotype: protein_coding
description:
  PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dde:Dde_0754 TRAP-type C4-dicarboxylate transport system periplasmic component-like.


ensembl_gene_id: DvMF_1204
symbol: DvMF_1204
gene_biotype: protein_coding
description:
  PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: dde:Dde_0750 FMN-dependent family dehydrogenase.


ensembl_gene_id: DvMF_1205
symbol: DvMF_1205
gene_biotype: protein_coding
description:
  PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: dde:Dde_0749 GntR family transcriptional regulator.


ensembl_gene_id: DvMF_1209
symbol: DvMF_1209
gene_biotype: protein_coding
description:
  PFAM: chemotaxis sensory transducer; KEGG: mgm:Mmc1_3308 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: DvMF_1213
symbol: DvMF_1213
gene_biotype: protein_coding
description:
  Sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold-4 domain protein; SMART: AAA ATPase; KEGG: dde:Dde_0318 Fis family transcriptional regulator.


ensembl_gene_id: DvMF_1214
symbol: DvMF_1214
gene_biotype: protein_coding
description:
  PFAM: chemotaxis sensory transducer; KEGG: dde:Dde_0218 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: DvMF_1215
symbol: DvMF_1215
gene_biotype: protein_coding
description:
  TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; Fe-S cluster domain protein; KEGG: dde:Dde_0719 molybdopterin-guanine dinucleotide biosynthesis protein-like.


ensembl_gene_id: DvMF_1217
symbol: DvMF_1217
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_0813 formate dehydrogenase alpha subunit; TIGRFAM: formate dehydrogenase, alpha subunit; Contains selenocysteine; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: DvMF_1220
symbol: DvMF_1220
gene_biotype: protein_coding
description:
  PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: dde:Dde_0713 hypothetical protein.


ensembl_gene_id: DvMF_1222
symbol: DvMF_1222
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_0711 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: DvMF_1223
symbol: DvMF_1223
gene_biotype: protein_coding
description:
  Anti-sigma-factor antagonist; PFAM: response regulator receiver; Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dde:Dde_0710 response regulator receiver domain-containing protein.


ensembl_gene_id: DvMF_1224
symbol: DvMF_1224
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: dde:Dde_0161 LytR/AlgR family transcriptional regulator.


ensembl_gene_id: DvMF_1225
symbol: DvMF_1225
gene_biotype: protein_coding
description:
  Signal transduction histidine kinase, LytS; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type transmembrane region; KEGG: dde:Dde_0160 ATP-binding region, ATPase-like.


ensembl_gene_id: DvMF_1230
symbol: moaA
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.


ensembl_gene_id: DvMF_1231
symbol: mobA
gene_biotype: protein_coding
description:
  Molybdopterin-guanine dinucleotide biosynthesis protein A-like protein; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor; Belongs to the MobA family.


ensembl_gene_id: DvMF_1234
symbol: msrB
gene_biotype: protein_coding
description:
  TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: rca:Rcas_3054 methionine-R-sulfoxide reductase.


ensembl_gene_id: DvMF_1239
symbol: DvMF_1239
gene_biotype: protein_coding
description:
  PFAM: zinc finger DksA/TraR C4-type; KEGG: glo:Glov_0401 transcriptional regulator, TraR/DksA family.


ensembl_gene_id: DvMF_1241
symbol: DvMF_1241
gene_biotype: protein_coding
description:
  Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: sfu:Sfum_1722 ferric uptake regulator, Fur family; Belongs to the Fur family.


ensembl_gene_id: DvMF_1242
symbol: katA
gene_biotype: protein_coding
description:
  Catalase; Decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide.


ensembl_gene_id: DvMF_1243
symbol: DvMF_1243
gene_biotype: protein_coding
description:
  Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_1071 multi-sensor signal transduction histidine kinase.


ensembl_gene_id: DvMF_1245
symbol: DvMF_1245
gene_biotype: protein_coding
description:
  PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mth:MTH1567 catalytic subunit of nitrate reductase (flp); Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: DvMF_1246
symbol: ddl
gene_biotype: protein_coding
description:
  D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.


ensembl_gene_id: DvMF_1247
symbol: DvMF_1247
gene_biotype: protein_coding
description:
  PFAM: alpha/beta hydrolase fold; KEGG: tte:TTE2547 predicted hydrolase or acyltransferase (alpha/beta hydrolase superfamily).


ensembl_gene_id: DvMF_1248
symbol: DvMF_1248
gene_biotype: protein_coding
description:
  PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: tme:Tmel_0488 Mur ligase middle domain-containing protein.


ensembl_gene_id: DvMF_1249
symbol: DvMF_1249
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: gdi:GDI3707 GGDEF family signaling protein.


ensembl_gene_id: DvMF_1251
symbol: DvMF_1251
gene_biotype: protein_coding
description:
  KEGG: glo:Glov_0558 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: DvMF_1252
symbol: DvMF_1252
gene_biotype: protein_coding
description:
  PFAM: Ethanolamine ammonia-lyase light chain; KEGG: pen:PSEEN0631 ethanolamine ammonia-lyase small subunit; Belongs to the EutC family.


ensembl_gene_id: DvMF_1253
symbol: DvMF_1253
gene_biotype: protein_coding
description:
  PFAM: Ethanolamine ammonia lyase large subunit; KEGG: psa:PST_3681 ethanolamine ammonia-lyase large subunit.


ensembl_gene_id: DvMF_1258
symbol: DvMF_1258
gene_biotype: protein_coding
description:
  TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: glo:Glov_1153 phosphonate ABC transporter, periplasmic phosphonate-binding protein.


ensembl_gene_id: DvMF_1259
symbol: DvMF_1259
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: gur:Gura_3624 integral membrane sensor signal transduction histidine kinase.


ensembl_gene_id: DvMF_1260
symbol: DvMF_1260
gene_biotype: protein_coding
description:
  Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: gme:Gmet_2453 two component, sigma54 specific, transcriptional regulator, Fis family.


ensembl_gene_id: DvMF_1261
symbol: DvMF_1261
gene_biotype: protein_coding
description:
  Putative phage repressor; PFAM: CI repressor; peptidase S24 and S26 domain protein; KEGG: lip:LI0836 predicted transcriptional regulator.


ensembl_gene_id: DvMF_1276
symbol: DvMF_1276
gene_biotype: protein_coding
description:
  PFAM: Lytic transglycosylase catalytic; KEGG: bbr:BB3638 putative lytic murein transglycosylase precursor.


ensembl_gene_id: DvMF_1285
symbol: DvMF_1285
gene_biotype: protein_coding
description:
  TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: putative head morphogenesis protein SPP1 gp7; KEGG: dde:Dde_3374 phage putative head morphogenesis protein, SPP1 gp7.


ensembl_gene_id: DvMF_1290
symbol: DvMF_1290
gene_biotype: protein_coding
description:
  TIGRFAM: phage virion morphogenesis protein; PFAM: virion morphogenesis (putative tail completion) protein; KEGG: dde:Dde_3379 phage virion morphogenesis (putative tail completion) protein.


ensembl_gene_id: DvMF_1298
symbol: DvMF_1298
gene_biotype: protein_coding
description:
  TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: tail tape measure protein TP901 core region; KEGG: sew:SeSA_A4475 tail protein.


ensembl_gene_id: DvMF_1308
symbol: DvMF_1308
gene_biotype: protein_coding
description:
  PFAM: DNA methylase N-4/N-6 domain protein; KEGG: dde:Dde_1300 adenine specific DNA methyltransferase, putative; Belongs to the N(4)/N(6)-methyltransferase family.


ensembl_gene_id: DvMF_1310
symbol: DvMF_1310
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_3058 FolC bifunctional protein; TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein.


ensembl_gene_id: DvMF_1311
symbol: selA
gene_biotype: protein_coding
description:
  L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.


ensembl_gene_id: DvMF_1312
symbol: DvMF_1312
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dde:Dde_3060 NAD-dependent epimerase/dehydratase family protein.


ensembl_gene_id: DvMF_1315
symbol: DvMF_1315
gene_biotype: protein_coding
description:
  PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_3062 alcohol dehydrogenase, iron-containing.


ensembl_gene_id: DvMF_1320
symbol: DvMF_1320
gene_biotype: protein_coding
description:
  Putative transcriptional regulator, CopG family; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family.


ensembl_gene_id: DvMF_1322
symbol: DvMF_1322
gene_biotype: protein_coding
description:
  PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_2958 flagellar basal-body rod protein, putative; Belongs to the flagella basal body rod proteins family.


ensembl_gene_id: DvMF_1324
symbol: DvMF_1324
gene_biotype: protein_coding
description:
  Sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: dde:Dde_2959 Fis family transcriptional regulator.


ensembl_gene_id: DvMF_1325
symbol: DvMF_1325
gene_biotype: protein_coding
description:
  PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_2960 TPR repeat-containing protein.


ensembl_gene_id: DvMF_1326
symbol: DvMF_1326
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF52; KEGG: dde:Dde_2961 hypothetical protein; Belongs to the MEMO1 family.


ensembl_gene_id: DvMF_1330
symbol: miaB
gene_biotype: protein_coding
description:
  RNA modification enzyme, MiaB family; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.


ensembl_gene_id: DvMF_1332
symbol: DvMF_1332
gene_biotype: protein_coding
description:
  PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: pca:Pcar_1215 hypothetical protein.


ensembl_gene_id: DvMF_1334
symbol: DvMF_1334
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; KEGG: dde:Dde_2384 response regulator receiver domain-containing protein.


ensembl_gene_id: DvMF_1335
symbol: DvMF_1335
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF615; KEGG: dde:Dde_1395 hypothetical protein; Belongs to the UPF0307 family.


ensembl_gene_id: DvMF_1337
symbol: DvMF_1337
gene_biotype: protein_coding
description:
  TIGRFAM: 4-hydroxybenzoate polyprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: dde:Dde_1392 4-hydroxybenzoate octaprenyltransferase; Belongs to the UbiA prenyltransferase family.


ensembl_gene_id: DvMF_1338
symbol: DvMF_1338
gene_biotype: protein_coding
description:
  PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_1391 metal dependent phosphohydrolase.


ensembl_gene_id: DvMF_1339
symbol: DvMF_1339
gene_biotype: protein_coding
description:
  TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: dde:Dde_1390 molybdopterin binding domain-containing protein.


ensembl_gene_id: DvMF_1343
symbol: DvMF_1343
gene_biotype: protein_coding
description:
  TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_1386 amino acid ABC transporter permease.


ensembl_gene_id: DvMF_1344
symbol: DvMF_1344
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: dde:Dde_1385 extracellular solute-binding protein.


ensembl_gene_id: DvMF_1347
symbol: queF
gene_biotype: protein_coding
description:
  7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily.


ensembl_gene_id: DvMF_1348
symbol: lptD
gene_biotype: protein_coding
description:
  Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.


ensembl_gene_id: DvMF_1349
symbol: alr
gene_biotype: protein_coding
description:
  Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.


ensembl_gene_id: DvMF_1351
symbol: rpsR
gene_biotype: protein_coding
description:
  Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.


ensembl_gene_id: DvMF_1353
symbol: DvMF_1353
gene_biotype: protein_coding
description:
  Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.


ensembl_gene_id: DvMF_1356
symbol: tyrS
gene_biotype: protein_coding
description:
  tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily.


ensembl_gene_id: DvMF_1358
symbol: DvMF_1358
gene_biotype: protein_coding
description:
  Molybdenum cofactor synthesis domain protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.


ensembl_gene_id: DvMF_1360
symbol: DvMF_1360
gene_biotype: protein_coding
description:
  Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dde:Dde_0879 two component Fis family transcriptional regulator.


ensembl_gene_id: DvMF_1361
symbol: DvMF_1361
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dde:Dde_0878 periplasmic sensor signal transduction histidine kinase.


ensembl_gene_id: DvMF_1364
symbol: fur
gene_biotype: protein_coding
description:
  Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: dde:Dde_2676 ferric uptake regulator family protein; Belongs to the Fur family.


ensembl_gene_id: DvMF_1365
symbol: DvMF_1365
gene_biotype: protein_coding
description:
  PFAM: peptidase M16 domain protein; Peptidase M16C associated domain protein; KEGG: dde:Dde_2677 PreP peptidase.


ensembl_gene_id: DvMF_1366
symbol: DvMF_1366
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_2680 diguanylate cyclase.


ensembl_gene_id: DvMF_1370
symbol: DvMF_1370
gene_biotype: protein_coding
description:
  TIGRFAM: DNA binding domain protein, excisionase family; KEGG: dde:Dde_2684 excisionase/Xis, DNA-binding.


ensembl_gene_id: DvMF_1372
symbol: DvMF_1372
gene_biotype: protein_coding
description:
  TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-4 domain protein; KEGG: dde:Dde_0703 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: DvMF_1374
symbol: DvMF_1374
gene_biotype: protein_coding
description:
  Putative PAS/PAC sensor protein; KEGG: rxy:Rxyl_0093 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: DvMF_1375
symbol: DvMF_1375
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: dde:Dde_2687 PAS/PAC sensor signal transduction histidine kinase.


ensembl_gene_id: DvMF_1376
symbol: DvMF_1376
gene_biotype: protein_coding
description:
  TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: dde:Dde_2688 phosphomethylpyrimidine kinase.


ensembl_gene_id: DvMF_1377
symbol: proB
gene_biotype: protein_coding
description:
  Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.


ensembl_gene_id: DvMF_1378
symbol: obg
gene_biotype: protein_coding
description:
  GTP-binding protein Obg/CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.


ensembl_gene_id: DvMF_1379
symbol: rpmA
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein L27; KEGG: dde:Dde_2691 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.


ensembl_gene_id: DvMF_1380
symbol: rplU
gene_biotype: protein_coding
description:
  Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.


ensembl_gene_id: DvMF_1381
symbol: DvMF_1381
gene_biotype: protein_coding
description:
  Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.


ensembl_gene_id: DvMF_1383
symbol: DvMF_1383
gene_biotype: protein_coding
description:
  TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: dde:Dde_2695 RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.


ensembl_gene_id: DvMF_1388
symbol: atpB
gene_biotype: protein_coding
description:
  ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.


ensembl_gene_id: DvMF_1389
symbol: atpE
gene_biotype: protein_coding
description:
  ATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.


ensembl_gene_id: DvMF_1390
symbol: rex
gene_biotype: protein_coding
description:
  CoA-binding domain protein; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.


ensembl_gene_id: DvMF_1392
symbol: cobS
gene_biotype: protein_coding
description:
  Cobalamin-5-phosphate synthase CobS; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.


ensembl_gene_id: DvMF_1395
symbol: truA
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.


ensembl_gene_id: DvMF_1396
symbol: DvMF_1396
gene_biotype: protein_coding
description:
  PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: dde:Dde_2708 flagellar motor switch protein FliM.


ensembl_gene_id: DvMF_1400
symbol: lipB
gene_biotype: protein_coding
description:
  Lipoate-protein ligase B; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.


ensembl_gene_id: DvMF_1401
symbol: lipA
gene_biotype: protein_coding
description:
  Lipoic acid synthetase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.


ensembl_gene_id: DvMF_1402
symbol: DvMF_1402
gene_biotype: protein_coding
description:
  RNA modification enzyme, MiaB family; KEGG: dde:Dde_2722 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: DvMF_1404
symbol: recD2
gene_biotype: protein_coding
description:
  Helicase, RecD/TraA family; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.


ensembl_gene_id: DvMF_1407
symbol: DvMF_1407
gene_biotype: protein_coding
description:
  PFAM: metal-dependent phosphohydrolase HD sub domain; CHASE2 domain protein; SMART: metal-dependent phosphohydrolase HD region; KEGG: dar:Daro_1897 metal-dependent phosphohydrolase.


ensembl_gene_id: DvMF_1408
symbol: aroC
gene_biotype: protein_coding
description:
  Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.


ensembl_gene_id: DvMF_1412
symbol: DvMF_1412
gene_biotype: protein_coding
description:
  PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; KEGG: dde:Dde_2731 homoserine dehydrogenase.


ensembl_gene_id: DvMF_1414
symbol: DvMF_1414
gene_biotype: protein_coding
description:
  Phosphoglycerate mutase; PFAM: metalloenzyme domain protein; KEGG: dde:Dde_2732 phosphoglycerate mutase.


ensembl_gene_id: DvMF_1417
symbol: DvMF_1417
gene_biotype: protein_coding
description:
  TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: dsy:DSY3476 hypothetical protein.


ensembl_gene_id: DvMF_1419
symbol: DvMF_1419
gene_biotype: protein_coding
description:
  KEGG: rci:RCIX1753 putative signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein.


ensembl_gene_id: DvMF_1425
symbol: pyrB
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_2964 aspartate carbamoyltransferase catalytic subunit; TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.


ensembl_gene_id: DvMF_1426
symbol: pyrC
gene_biotype: protein_coding
description:
  Dihydroorotase, multifunctional complex type; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.


ensembl_gene_id: DvMF_1427
symbol: DvMF_1427
gene_biotype: protein_coding
description:
  PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dde:Dde_2966 HD domain-containing protein.


ensembl_gene_id: DvMF_1431
symbol: rlmN
gene_biotype: protein_coding
description:
  Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.


ensembl_gene_id: DvMF_1433
symbol: DvMF_1433
gene_biotype: protein_coding
description:
  PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_3126 alcohol dehydrogenase, iron-containing.


ensembl_gene_id: DvMF_1434
symbol: DvMF_1434
gene_biotype: protein_coding
description:
  DNA-directed DNA polymerase; PFAM: UMUC domain protein DNA-repair protein; KEGG: dde:Dde_2973 DNA-directed DNA polymerase.


ensembl_gene_id: DvMF_1435
symbol: DvMF_1435
gene_biotype: protein_coding
description:
  PFAM: peptidase S24 and S26 domain protein; KEGG: dde:Dde_2974 SOS mutagenesis protein UmuD; Belongs to the peptidase S24 family.


ensembl_gene_id: DvMF_1439
symbol: DvMF_1439
gene_biotype: protein_coding
description:
  Putative phytochrome sensor protein; PFAM: GAF domain protein; KEGG: dde:Dde_3737 hypothetical protein.


ensembl_gene_id: DvMF_1440
symbol: DvMF_1440
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_3736 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.


ensembl_gene_id: DvMF_1441
symbol: DvMF_1441
gene_biotype: protein_coding
description:
  TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; Methyltransferase type 11; KEGG: dde:Dde_2981 hemolysin A.


ensembl_gene_id: DvMF_1444
symbol: prfA
gene_biotype: protein_coding
description:
  Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.


ensembl_gene_id: DvMF_1445
symbol: prmC
gene_biotype: protein_coding
description:
  protein-(glutamine-N5) methyltransferase, release factor-specific; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.


ensembl_gene_id: DvMF_1446
symbol: lpxC
gene_biotype: protein_coding
description:
  UDP-3-0-acyl N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.


ensembl_gene_id: DvMF_1447
symbol: tuf
gene_biotype: protein_coding
description:
  Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.


ensembl_gene_id: DvMF_1448
symbol: rpmG
gene_biotype: protein_coding
description:
  PFAM: ribosomal protein L33; KEGG: ttj:TTHA0250 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.


ensembl_gene_id: DvMF_1449
symbol: secE
gene_biotype: protein_coding
description:
  Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.


ensembl_gene_id: DvMF_1450
symbol: nusG
gene_biotype: protein_coding
description:
  NusG antitermination factor; Participates in transcription elongation, termination and antitermination.


ensembl_gene_id: DvMF_1451
symbol: rplK
gene_biotype: protein_coding
description:
  Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.


ensembl_gene_id: DvMF_1452
symbol: rplA
gene_biotype: protein_coding
description:
  Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.


ensembl_gene_id: DvMF_1453
symbol: rplJ
gene_biotype: protein_coding
description:
  Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.


ensembl_gene_id: DvMF_1454
symbol: rplL
gene_biotype: protein_coding
description:
  Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.


ensembl_gene_id: DvMF_1455
symbol: rpoB
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: DvMF_1456
symbol: rpoC
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.


ensembl_gene_id: DvMF_1458
symbol: DvMF_1458
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_3000 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: DvMF_1459
symbol: DvMF_1459
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: dde:Dde_3001 hypothetical protein.


ensembl_gene_id: DvMF_1460
symbol: DvMF_1460
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_3002 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; metal dependent phophohydrolase; PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; PAS fold-4 domain protein; Metal-dependent hydrolase HDOD; SMART: PAS domain containing protein; metal-dependent phosphohydrolase HD region.


ensembl_gene_id: DvMF_1461
symbol: DvMF_1461
gene_biotype: protein_coding
description:
  Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: dde:Dde_3003 two component Fis family transcriptional regulator.


ensembl_gene_id: DvMF_1462
symbol: gpmA
gene_biotype: protein_coding
description:
  Phosphoglycerate mutase 1 family; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.


ensembl_gene_id: DvMF_1463
symbol: DvMF_1463
gene_biotype: protein_coding
description:
  PFAM: TPR repeat-containing protein; response regulator receiver; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_3006 response regulator receiver domain-containing protein.


ensembl_gene_id: DvMF_1467
symbol: DvMF_1467
gene_biotype: protein_coding
description:
  TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: dde:Dde_3010 hypothetical protein.


ensembl_gene_id: DvMF_1468
symbol: DvMF_1468
gene_biotype: protein_coding
description:
  TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: dde:Dde_3011 adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.


ensembl_gene_id: DvMF_1469
symbol: pyrE
gene_biotype: protein_coding
description:
  Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).


ensembl_gene_id: DvMF_1473
symbol: DvMF_1473
gene_biotype: protein_coding
description:
  TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; PFAM: ATP-cone domain protein; KEGG: dde:Dde_3016 anaerobic ribonucleoside triphosphate reductase.


ensembl_gene_id: DvMF_1476
symbol: DvMF_1476
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF486; KEGG: rsq:Rsph17025_2306 protein of unknown function DUF486.


ensembl_gene_id: DvMF_1477
symbol: DvMF_1477
gene_biotype: protein_coding
description:
  Diguanylate cyclase with PAS/PAC sensor; KEGG: bur:Bcep18194_B1707 diguanylate cyclase (GGDEF domain); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.


ensembl_gene_id: DvMF_1478
symbol: DvMF_1478
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: sfu:Sfum_0378 extracellular ligand-binding receptor.


ensembl_gene_id: DvMF_1479
symbol: DvMF_1479
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: fal:FRAAL6172 putative GntR-family transcription regulator.


ensembl_gene_id: DvMF_1480
symbol: DvMF_1480
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fal:FRAAL0729 high-affinity branched-chain amino acid transport protein (ABC superfamily, atp_bind).


ensembl_gene_id: DvMF_1482
symbol: DvMF_1482
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: gme:Gmet_1821 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: DvMF_1483
symbol: DvMF_1483
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: glo:Glov_1862 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: DvMF_1484
symbol: DvMF_1484
gene_biotype: protein_coding
description:
  PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: pth:PTH_2707 anaerobic dehydrogenases; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: DvMF_1485
symbol: glnS
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_0626 glutaminyl-tRNA synthetase; TIGRFAM: glutaminyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic.


ensembl_gene_id: DvMF_1486
symbol: rsgA
gene_biotype: protein_coding
description:
  GTPase EngC; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.


ensembl_gene_id: DvMF_1488
symbol: DvMF_1488
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF1063; KEGG: dde:Dde_0807 hypothetical protein; Belongs to the UPF0597 family.


ensembl_gene_id: DvMF_1489
symbol: DvMF_1489
gene_biotype: protein_coding
description:
  PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: cvi:CV_0188 homoserine/homoserine lactone efflux protein.


ensembl_gene_id: DvMF_1490
symbol: DvMF_1490
gene_biotype: protein_coding
description:
  Nitrite reductase (cytochrome; PFAM: cytochrome c552; KEGG: lip:LI1002 chain A, cytochrome c nitrite reductase; Belongs to the cytochrome c-552 family.


ensembl_gene_id: DvMF_1492
symbol: DvMF_1492
gene_biotype: protein_coding
description:
  Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: lch:Lcho_4210 multi-sensor hybrid histidine kinase.


ensembl_gene_id: DvMF_1493
symbol: DvMF_1493
gene_biotype: protein_coding
description:
  Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: gbm:Gbem_0673 putative two component, sigma54 specific, transcriptional regulator, fis family.


ensembl_gene_id: DvMF_1494
symbol: DvMF_1494
gene_biotype: protein_coding
description:
  TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: dde:Dde_1415 type I secretion outer membrane protein, TolC.


ensembl_gene_id: DvMF_1495
symbol: DvMF_1495
gene_biotype: protein_coding
description:
  PFAM: Hemolysin-type calcium-binding region; von Willebrand factor type A; KEGG: asa:ASA_1675 hemolysin-type calcium-binding repeat-containing protein.


ensembl_gene_id: DvMF_1496
symbol: DvMF_1496
gene_biotype: protein_coding
description:
  PFAM: anaerobic cobalt chelatase; KEGG: dde:Dde_3103 cobalamin biosynthesis protein CbiK Co2+ chelatase-like.


ensembl_gene_id: DvMF_1497
symbol: DvMF_1497
gene_biotype: protein_coding
description:
  PFAM: transport system permease protein; KEGG: dde:Dde_3104 iron compound ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.


ensembl_gene_id: DvMF_1499
symbol: DvMF_1499
gene_biotype: protein_coding
description:
  PFAM: periplasmic binding protein; KEGG: dde:Dde_3106 iron compound ABC transporter, periplasmic iron compount-binding protein, putative.


ensembl_gene_id: DvMF_1500
symbol: DvMF_1500
gene_biotype: protein_coding
description:
  TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dde:Dde_3107 cobalt-factor II C20-methyltransferase.


ensembl_gene_id: DvMF_1501
symbol: DvMF_1501
gene_biotype: protein_coding
description:
  PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: DvMF_1502
symbol: DvMF_1502
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF330; KEGG: rsq:Rsph17025_1717 ABC-type uncharacterized transport system auxiliary component-like protein.


ensembl_gene_id: DvMF_1503
symbol: DvMF_1503
gene_biotype: protein_coding
description:
  PFAM: Mammalian cell entry related domain protein; KEGG: pla:Plav_2514 mammalian cell entry related domain protein.


ensembl_gene_id: DvMF_1507
symbol: DvMF_1507
gene_biotype: protein_coding
description:
  PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: par:Psyc_1134 hypothetical protein.


ensembl_gene_id: DvMF_1510
symbol: DvMF_1510
gene_biotype: protein_coding
description:
  Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dde:Dde_3040 two component Fis family transcriptional regulator.


ensembl_gene_id: DvMF_1512
symbol: DvMF_1512
gene_biotype: protein_coding
description:
  TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: dde:Dde_2582 endoribonuclease L-PSP.


ensembl_gene_id: DvMF_1513
symbol: DvMF_1513
gene_biotype: protein_coding
description:
  PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_1151 metal dependent phosphohydrolase.


ensembl_gene_id: DvMF_1514
symbol: DvMF_1514
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aav:Aave_3998 diguanylate cyclase.


ensembl_gene_id: DvMF_1515
symbol: DvMF_1515
gene_biotype: protein_coding
description:
  PFAM: acriflavin resistance protein; KEGG: gur:Gura_2371 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.


ensembl_gene_id: DvMF_1516
symbol: DvMF_1516
gene_biotype: protein_coding
description:
  TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: gme:Gmet_1651 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: DvMF_1517
symbol: DvMF_1517
gene_biotype: protein_coding
description:
  PFAM: regulatory protein TetR; Transcriptional regulator TetR; KEGG: sfu:Sfum_0446 transcriptional regulator, TetR family.


ensembl_gene_id: DvMF_1518
symbol: DvMF_1518
gene_biotype: protein_coding
description:
  NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: tte:TTE0123 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/multisubunit Na+/H+ antiporter, MnhA subunit.


ensembl_gene_id: DvMF_1519
symbol: DvMF_1519
gene_biotype: protein_coding
description:
  PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: tte:TTE0124 NADH:ubiquinone oxidoreductase subunit 1 (chain H).


ensembl_gene_id: DvMF_1520
symbol: DvMF_1520
gene_biotype: protein_coding
description:
  PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: mbn:Mboo_0026 NADH ubiquinone oxidoreductase, 20 kDa subunit; Belongs to the complex I 20 kDa subunit family.


ensembl_gene_id: DvMF_1522
symbol: DvMF_1522
gene_biotype: protein_coding
description:
  PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: tte:TTE0127 NADH:ubiquinone oxidoreductase 49 kD subunit 7.


ensembl_gene_id: DvMF_1523
symbol: DvMF_1523
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tte:TTE0128 formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I).


ensembl_gene_id: DvMF_1525
symbol: DvMF_1525
gene_biotype: protein_coding
description:
  PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bpd:BURPS668_1728 antibiotic biosynthesis monooxygenase family protein.


ensembl_gene_id: DvMF_1526
symbol: DvMF_1526
gene_biotype: protein_coding
description:
  TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: mja:MJ0718 chromate resistance protein (ChrA).


ensembl_gene_id: DvMF_1528
symbol: DvMF_1528
gene_biotype: protein_coding
description:
  Phospholipase D/Transphosphatidylase; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol; Belongs to the phospholipase D family. Cardiolipin synthase subfamily.


ensembl_gene_id: DvMF_1530
symbol: DvMF_1530
gene_biotype: protein_coding
description:
  KEGG: mgm:Mmc1_1829 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.


ensembl_gene_id: DvMF_1532
symbol: DvMF_1532
gene_biotype: protein_coding
description:
  Carboxynorspermidine decarboxylase; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily.


ensembl_gene_id: DvMF_1537
symbol: DvMF_1537
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_0569 diguanylate cyclase.


ensembl_gene_id: DvMF_1538
symbol: pepA
gene_biotype: protein_coding
description:
  Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.


ensembl_gene_id: DvMF_1539
symbol: DvMF_1539
gene_biotype: protein_coding
description:
  PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: dde:Dde_1253 malate dehydrogenase.


ensembl_gene_id: DvMF_1540
symbol: DvMF_1540
gene_biotype: protein_coding
description:
  H(+)-transporting two-sector ATPase; PFAM: cation transporter; KEGG: dde:Dde_0567 TrkH family potassium uptake protein.


ensembl_gene_id: DvMF_1541
symbol: DvMF_1541
gene_biotype: protein_coding
description:
  PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: dde:Dde_0566 potassium uptake protein TrkA, putative.


ensembl_gene_id: DvMF_1543
symbol: rlpA
gene_biotype: protein_coding
description:
  Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.


ensembl_gene_id: DvMF_1544
symbol: DvMF_1544
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_0532 response regulator receiver/GGDEF/PAS/PAC domain-containing protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: DvMF_1553
symbol: DvMF_1553
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_0526 sulfite reductase, dissimilatory-type alpha subunit; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region.


ensembl_gene_id: DvMF_1554
symbol: DvMF_1554
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_0527 sulfite reductase, dissimilatory-type beta subunit; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region.


ensembl_gene_id: DvMF_1556
symbol: DvMF_1556
gene_biotype: protein_coding
description:
  TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: dde:Dde_0529 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase.


ensembl_gene_id: DvMF_1559
symbol: DvMF_1559
gene_biotype: protein_coding
description:
  PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: mag:amb4188 di- and tricarboxylate transporters.


ensembl_gene_id: DvMF_1560
symbol: DvMF_1560
gene_biotype: protein_coding
description:
  Histone family protein DNA-binding protein; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.


ensembl_gene_id: DvMF_1561
symbol: DvMF_1561
gene_biotype: protein_coding
description:
  PFAM: histidine triad (HIT) protein; KEGG: lip:LI0430 141aa long hypothetical histidine triad nucleotide-binding protein.


ensembl_gene_id: DvMF_1562
symbol: DvMF_1562
gene_biotype: protein_coding
description:
  PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: lip:LI0429 coproporphyrinogen III oxidase and related Fe-S oxidoreductases.


ensembl_gene_id: DvMF_1563
symbol: ung
gene_biotype: protein_coding
description:
  uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.


ensembl_gene_id: DvMF_1564
symbol: DvMF_1564
gene_biotype: protein_coding
description:
  Aminotransferase class I and II; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aminotransferase class I and II; KEGG: dde:Dde_0513 aminotransferase.


ensembl_gene_id: DvMF_1567
symbol: DvMF_1567
gene_biotype: protein_coding
description:
  D-lactate dehydrogenase (cytochrome); PFAM: FAD linked oxidase domain protein; KEGG: dde:Dde_0182 D-lactate dehydrogenase (cytochrome).


ensembl_gene_id: DvMF_1568
symbol: DvMF_1568
gene_biotype: protein_coding
description:
  TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0183 amino acid ABC transporter permease.


ensembl_gene_id: DvMF_1570
symbol: DvMF_1570
gene_biotype: protein_coding
description:
  TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0185 amino acid ABC transporter permease.


ensembl_gene_id: DvMF_1571
symbol: DvMF_1571
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_0186 extracellular solute-binding protein.


ensembl_gene_id: DvMF_1573
symbol: DvMF_1573
gene_biotype: protein_coding
description:
  Undecaprenyl-phosphate galactose phosphotransferase, WbaP; KEGG: lip:LI0512 sugar transferases involved in lipopolysaccharide synthesis; TIGRFAM: Undecaprenyl-phosphate galactose phosphotransferase, WbaP; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.


ensembl_gene_id: DvMF_1575
symbol: DvMF_1575
gene_biotype: protein_coding
description:
  TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: dde:Dde_2506 sulfate permease.


ensembl_gene_id: DvMF_1576
symbol: DvMF_1576
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: scl:sce0089 transcriptional regulator, AraC family.


ensembl_gene_id: DvMF_1580
symbol: DvMF_1580
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: sfu:Sfum_0314 extracellular ligand-binding receptor.


ensembl_gene_id: DvMF_1581
symbol: DvMF_1581
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: sfu:Sfum_0313 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: DvMF_1582
symbol: DvMF_1582
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: pth:PTH_0460 ABC-type branched-chain amino acid transport system, permeasecomponent.


ensembl_gene_id: DvMF_1583
symbol: DvMF_1583
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU2008 branched-chain amino acid ABC transporter, ATP-binding protein.


ensembl_gene_id: DvMF_1587
symbol: DvMF_1587
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: asu:Asuc_1717 ABC transporter related; Belongs to the ABC transporter superfamily.


ensembl_gene_id: DvMF_1589
symbol: DvMF_1589
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pmu:PM1454 MsmK; Belongs to the ABC transporter superfamily.


ensembl_gene_id: DvMF_1593
symbol: DvMF_1593
gene_biotype: protein_coding
description:
  NADH-ubiquinone/plastoquinone oxidoreductase chain 3; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain.


ensembl_gene_id: DvMF_1594
symbol: nuoB
gene_biotype: protein_coding
description:
  NADH-quinone oxidoreductase, B subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: DvMF_1595
symbol: DvMF_1595
gene_biotype: protein_coding
description:
  PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: dps:DP1319 NADH dehydrogenase, subunit 9.


ensembl_gene_id: DvMF_1596
symbol: nuoD
gene_biotype: protein_coding
description:
  NADH dehydrogenase (quinone); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.


ensembl_gene_id: DvMF_1597
symbol: nuoH
gene_biotype: protein_coding
description:
  NADH dehydrogenase (quinone); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.


ensembl_gene_id: DvMF_1598
symbol: DvMF_1598
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ote:Oter_0748 4Fe-4S ferredoxin iron-sulfur binding domain protein.


ensembl_gene_id: DvMF_1599
symbol: DvMF_1599
gene_biotype: protein_coding
description:
  NADH-ubiquinone/plastoquinone oxidoreductase chain 6; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.


ensembl_gene_id: DvMF_1600
symbol: nuoK
gene_biotype: protein_coding
description:
  NADH-ubiquinone oxidoreductase chain 4L; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family.


ensembl_gene_id: DvMF_1601
symbol: DvMF_1601
gene_biotype: protein_coding
description:
  NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: dps:DP1313 putative monovalent cation/H+ antiporter subunit D.


ensembl_gene_id: DvMF_1603
symbol: DvMF_1603
gene_biotype: protein_coding
description:
  NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: ote:Oter_0753 NADH dehydrogenase (quinone).


ensembl_gene_id: DvMF_1604
symbol: DvMF_1604
gene_biotype: protein_coding
description:
  KEGG: ote:Oter_0754 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I).


ensembl_gene_id: DvMF_1605
symbol: nuoN
gene_biotype: protein_coding
description:
  NADH dehydrogenase (quinone); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family.


ensembl_gene_id: DvMF_1607
symbol: DvMF_1607
gene_biotype: protein_coding
description:
  PFAM: regulatory protein LuxR; response regulator receiver; KEGG: ppd:Ppro_3481 two component LuxR family transcriptional regulator.


ensembl_gene_id: DvMF_1608
symbol: DvMF_1608
gene_biotype: protein_coding
description:
  Histidine kinase; PFAM: extracellular solute-binding protein family 3; ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: gme:Gmet_2788 histidine kinase.


ensembl_gene_id: DvMF_1611
symbol: DvMF_1611
gene_biotype: protein_coding
description:
  TIGRFAM: dimethylsulfoxide reductase, chain B; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pac:PPA0516 anaerobic dimethyl sulfoxide reductase, chain B.


ensembl_gene_id: DvMF_1612
symbol: DvMF_1612
gene_biotype: protein_coding
description:
  TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: apl:APL_1674 anaerobic dimethyl sulfoxide reductase chain A precursor; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: DvMF_1613
symbol: DvMF_1613
gene_biotype: protein_coding
description:
  PFAM: molybdopterin binding domain; formylmethanofuran dehydrogenase subunit E region; KEGG: sfu:Sfum_0032 molybdopterin binding domain.


ensembl_gene_id: DvMF_1614
symbol: DvMF_1614
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: bte:BTH_I1692 transcriptional regulator, AraC family, putative.


ensembl_gene_id: DvMF_1619
symbol: DvMF_1619
gene_biotype: protein_coding
description:
  TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_3152 flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family.


ensembl_gene_id: DvMF_1620
symbol: DvMF_1620
gene_biotype: protein_coding
description:
  TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: dde:Dde_3151 flagellar hook-associated protein FlgL, putative.


ensembl_gene_id: DvMF_1621
symbol: DvMF_1621
gene_biotype: protein_coding
description:
  Flagellar hook-associated protein 2 domain protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.


ensembl_gene_id: DvMF_1623
symbol: DvMF_1623
gene_biotype: protein_coding
description:
  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; KEGG: rso:RSc2361 RNA polymerase sigma-E factor sigma-24 homolog transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily.


ensembl_gene_id: DvMF_1624
symbol: DvMF_1624
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mca:MCA2279 DNA-binding response regulator.


ensembl_gene_id: DvMF_1625
symbol: DvMF_1625
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: scl:sce4827 hypothetical protein.


ensembl_gene_id: DvMF_1626
symbol: DvMF_1626
gene_biotype: protein_coding
description:
  PFAM: Calcium-binding EF-hand-containing protein; KEGG: gbe:GbCGDNIH1_1190 hypothetical secreted protein.


ensembl_gene_id: DvMF_1627
symbol: DvMF_1627
gene_biotype: protein_coding
description:
  TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pca:Pcar_0814 outer membrane protein.


ensembl_gene_id: DvMF_1628
symbol: DvMF_1628
gene_biotype: protein_coding
description:
  TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: mca:MCA1810 hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: DvMF_1629
symbol: DvMF_1629
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mca:MCA1809 ABC transporter, ATP-binding protein.


ensembl_gene_id: DvMF_1630
symbol: DvMF_1630
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF214; KEGG: mca:MCA1808 ABC-transporter permease protein, putative.


ensembl_gene_id: DvMF_1631
symbol: DvMF_1631
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: azo:azo2745 probable DNA-binding response regulator.


ensembl_gene_id: DvMF_1632
symbol: DvMF_1632
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: eba:ebA4466 histidine kinase-like ATPase.


ensembl_gene_id: DvMF_1633
symbol: DvMF_1633
gene_biotype: protein_coding
description:
  PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-4 domain protein; PAS fold domain protein; KEGG: dde:Dde_1665 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: DvMF_1635
symbol: DvMF_1635
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: bav:BAV1312 phage DNA-binding protein.


ensembl_gene_id: DvMF_1645
symbol: DvMF_1645
gene_biotype: protein_coding
description:
  Prophage antirepressor; PFAM: BRO domain protein; KEGG: vco:VC0395_1058 BRO family, N-domain protein.


ensembl_gene_id: DvMF_1652
symbol: DvMF_1652
gene_biotype: protein_coding
description:
  TIGRFAM: phage head-tail adaptor; PFAM: putative head-tail adaptor protein; KEGG: asu:Asuc_1242 phage head-tail adaptor, putative.


ensembl_gene_id: DvMF_1655
symbol: DvMF_1655
gene_biotype: protein_coding
description:
  TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: spq:SPAB_02163 hypothetical protein.


ensembl_gene_id: DvMF_1656
symbol: DvMF_1656
gene_biotype: protein_coding
description:
  TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35 phage prohead HK97; KEGG: smd:Smed_1335 phage prohead protease, HK97 family.


ensembl_gene_id: DvMF_1657
symbol: DvMF_1657
gene_biotype: protein_coding
description:
  TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: smd:Smed_1336 phage portal protein, HK97 family.


ensembl_gene_id: DvMF_1668
symbol: DvMF_1668
gene_biotype: protein_coding
description:
  PFAM: plasmid maintenance system killer; KEGG: mag:amb0661 plasmid maintenance system killer protein.


ensembl_gene_id: DvMF_1669
symbol: DvMF_1669
gene_biotype: protein_coding
description:
  Plasmid maintenance system antidote protein, XRE family; TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: mag:amb0660 plasmid maintenance system antidote protein.


ensembl_gene_id: DvMF_1678
symbol: DvMF_1678
gene_biotype: protein_coding
description:
  Putative phage repressor; PFAM: peptidase S24 and S26 domain protein; KEGG: mca:MCA2959 prophage MuMc02, S24 family peptidase.


ensembl_gene_id: DvMF_1690
symbol: DvMF_1690
gene_biotype: protein_coding
description:
  PFAM: polysaccharide export protein; KEGG: amc:MADE_03058 capsular polysaccharide transport protein, putative.


ensembl_gene_id: DvMF_1692
symbol: DvMF_1692
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_0659 Fis family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase.


ensembl_gene_id: DvMF_1693
symbol: DvMF_1693
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0657 iron-sulfur cluster-binding protein.


ensembl_gene_id: DvMF_1696
symbol: DvMF_1696
gene_biotype: protein_coding
description:
  PFAM: Phosphoglycerate mutase; 6-phosphofructo-2-kinase; KEGG: dde:Dde_0511 6-phosphofructo-2-kinase.


ensembl_gene_id: DvMF_1698
symbol: DvMF_1698
gene_biotype: protein_coding
description:
  Methyl-accepting chemotaxis sensory transducer; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Hemerythrin HHE cation binding domain protein; KEGG: dde:Dde_2814 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: DvMF_1699
symbol: DvMF_1699
gene_biotype: protein_coding
description:
  Non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.


ensembl_gene_id: DvMF_1700
symbol: DvMF_1700
gene_biotype: protein_coding
description:
  TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_0505 PAS/PAC sensor signal transduction histidine kinase.


ensembl_gene_id: DvMF_1701
symbol: rimO
gene_biotype: protein_coding
description:
  MiaB-like tRNA modifying enzyme YliG; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.


ensembl_gene_id: DvMF_1702
symbol: DvMF_1702
gene_biotype: protein_coding
description:
  Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.


ensembl_gene_id: DvMF_1703
symbol: DvMF_1703
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_0508 signal peptide peptidase A; TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49.


ensembl_gene_id: DvMF_1705
symbol: DvMF_1705
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_0510 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77.


ensembl_gene_id: DvMF_1706
symbol: glmS
gene_biotype: protein_coding
description:
  Glucosamine/fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.


ensembl_gene_id: DvMF_1708
symbol: DvMF_1708
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: stp:Strop_3269 CRP/FNR family transcriptional regulator.


ensembl_gene_id: DvMF_1710
symbol: DvMF_1710
gene_biotype: protein_coding
description:
  PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: dau:Daud_0788 fumarate reductase/succinate dehydrogenase flavoprotein domain protein.


ensembl_gene_id: DvMF_1713
symbol: polA
gene_biotype: protein_coding
description:
  DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.


ensembl_gene_id: DvMF_1714
symbol: DvMF_1714
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function Met10; SMART: PUA domain containing protein; KEGG: dde:Dde_3451 SAM-dependent methyltransferase.


ensembl_gene_id: DvMF_1717
symbol: argC
gene_biotype: protein_coding
description:
  N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.


ensembl_gene_id: DvMF_1718
symbol: DvMF_1718
gene_biotype: protein_coding
description:
  PFAM: chemotaxis sensory transducer; KEGG: dde:Dde_3074 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: DvMF_1719
symbol: DvMF_1719
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_3456 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region.


ensembl_gene_id: DvMF_1722
symbol: purD
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_3458 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; ATP-grasp domain protein; Belongs to the GARS family.


ensembl_gene_id: DvMF_1723
symbol: purE
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).


ensembl_gene_id: DvMF_1728
symbol: DvMF_1728
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT1092 ABC transporter, ATP-binding protein.


ensembl_gene_id: DvMF_1729
symbol: mutL
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.


ensembl_gene_id: DvMF_1730
symbol: DvMF_1730
gene_biotype: protein_coding
description:
  Multi-sensor signal transduction histidine kinase; KEGG: dde:Dde_3465 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: DvMF_1732
symbol: DvMF_1732
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_3755 hydrogenase (NiFe) small subunit (HydA); TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit.


ensembl_gene_id: DvMF_1733
symbol: DvMF_1733
gene_biotype: protein_coding
description:
  PFAM: nickel-dependent hydrogenase large subunit; KEGG: dde:Dde_3756 periplasmic (NiFe) hydrogenase, large subunit, isozyme 2; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.


ensembl_gene_id: DvMF_1734
symbol: hldD
gene_biotype: protein_coding
description:
  ADP-L-glycero-D-manno-heptose-6-epimerase; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose; Belongs to the NAD(P)-dependent epimerase/dehydratase family. HldD subfamily.


ensembl_gene_id: DvMF_1736
symbol: DvMF_1736
gene_biotype: protein_coding
description:
  PFAM: tyrosine protein kinase; Serine/threonine protein kinase-related; SMART: serine/threonine protein kinase; KEGG: dde:Dde_3468 serine/threonine protein kinase.


ensembl_gene_id: DvMF_1737
symbol: DvMF_1737
gene_biotype: protein_coding
description:
  PFAM: metallophosphoesterase; KEGG: dde:Dde_3469 serine/threonine protein phosphatase family protein.


ensembl_gene_id: DvMF_1738
symbol: DvMF_1738
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: tcr:507957.200 mucin-associated surface protein (MASP), putative Pfam: Prosystemin PROSITE: ALA_RICH.


ensembl_gene_id: DvMF_1740
symbol: trpA
gene_biotype: protein_coding
description:
  Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.


ensembl_gene_id: DvMF_1741
symbol: trpB
gene_biotype: protein_coding
description:
  Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.


ensembl_gene_id: DvMF_1742
symbol: trpF-2
gene_biotype: protein_coding
description:
  PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: dde:Dde_3480 phosphoribosylanthranilate isomerase; Belongs to the TrpF family.


ensembl_gene_id: DvMF_1743
symbol: DvMF_1743
gene_biotype: protein_coding
description:
  PFAM: Indole-3-glycerol phosphate synthase; KEGG: amu:Amuc_1533 indole-3-glycerol-phosphate synthase; Belongs to the TrpC family.


ensembl_gene_id: DvMF_1744
symbol: trpD
gene_biotype: protein_coding
description:
  Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).


ensembl_gene_id: DvMF_1745
symbol: DvMF_1745
gene_biotype: protein_coding
description:
  TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: amu:Amuc_1532 anthranilate phosphoribosyltransferase.


ensembl_gene_id: DvMF_1746
symbol: DvMF_1746
gene_biotype: protein_coding
description:
  PFAM: Anthranilate synthase component I domain protein; Chorismate binding-like; KEGG: dde:Dde_3484 anthranilate synthase, component I.


ensembl_gene_id: DvMF_1747
symbol: DvMF_1747
gene_biotype: protein_coding
description:
  PFAM: Prephenate dehydrogenase; NADP oxidoreductase coenzyme F420-dependent; KEGG: dde:Dde_3485 prephenate dehydrogenase.


ensembl_gene_id: DvMF_1748
symbol: aroA
gene_biotype: protein_coding
description:
  3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.


ensembl_gene_id: DvMF_1749
symbol: DvMF_1749
gene_biotype: protein_coding
description:
  PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: dde:Dde_3487 prephenate dehydratase.


ensembl_gene_id: DvMF_1751
symbol: aroA-2
gene_biotype: protein_coding
description:
  Predicted phospho-2-dehydro-3-deoxyheptonate aldolase; Catalyzes a transaldol reaction between 6-deoxy-5- ketofructose 1-phosphate (DKFP) and L-aspartate semialdehyde (ASA) with an elimination of hydroxypyruvaldehyde phosphate to yield 2-amino-3,7- dideoxy-D-threo-hept-6-ulosonate (ADH). Plays a key role in an alternative pathway of the biosynthesis of 3-dehydroquinate (DHQ), which is involved in the canonical pathway for the biosynthesis of aromatic amino acids.


ensembl_gene_id: DvMF_1754
symbol: DvMF_1754
gene_biotype: protein_coding
description:
  Diguanylate phosphodiesterase; PFAM: EAL domain protein; KEGG: pth:PTH_0666 hypothetical signaling protein.


ensembl_gene_id: DvMF_1761
symbol: DvMF_1761
gene_biotype: protein_coding
description:
  Chloride channel core; PFAM: CBS domain containing protein; Chloride channel core; KEGG: dde:Dde_3504 chloride channel family protein.


ensembl_gene_id: DvMF_1762
symbol: DvMF_1762
gene_biotype: protein_coding
description:
  TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: cytidylyltransferase; FAD synthetase; Riboflavin kinase; KEGG: dde:Dde_3505 riboflavin kinase / FMN adenylyltransferase; Belongs to the ribF family.


ensembl_gene_id: DvMF_1763
symbol: DvMF_1763
gene_biotype: protein_coding
description:
  Sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: ade:Adeh_2651 two component, sigma54 specific, transcriptional regulator, fis family.


ensembl_gene_id: DvMF_1766
symbol: DvMF_1766
gene_biotype: protein_coding
description:
  Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family; KEGG: dde:Dde_0318 Fis family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; PAS fold-4 domain protein; SMART: AAA ATPase.


ensembl_gene_id: DvMF_1768
symbol: DvMF_1768
gene_biotype: protein_coding
description:
  PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sfu:Sfum_0651 integral membrane sensor signal transduction histidine kinase.


ensembl_gene_id: DvMF_1769
symbol: DvMF_1769
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; KEGG: dde:Dde_0321 response regulator receiver domain-containing protein.


ensembl_gene_id: DvMF_1773
symbol: DvMF_1773
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dol:Dole_1360 response regulator receiver sensor signal transduction histidine kinase.


ensembl_gene_id: DvMF_1775
symbol: acsA
gene_biotype: protein_coding
description:
  acetate/CoA ligase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.


ensembl_gene_id: DvMF_1776
symbol: DvMF_1776
gene_biotype: protein_coding
description:
  PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: dde:Dde_3208 acetyltransferase.


ensembl_gene_id: DvMF_1781
symbol: DvMF_1781
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 8; KEGG: cre:CHLREDRAFT_186791 hypothetical protein Pfam: Cu-oxidase_3 DUF246 Glyco_transf_8.


ensembl_gene_id: DvMF_1782
symbol: cheD
gene_biotype: protein_coding
description:
  CheD; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.


ensembl_gene_id: DvMF_1783
symbol: DvMF_1783
gene_biotype: protein_coding
description:
  PFAM: histone family protein DNA-binding protein; KEGG: dde:Dde_3213 histone-like DNA-binding protein; Belongs to the bacterial histone-like protein family.


ensembl_gene_id: DvMF_1786
symbol: DvMF_1786
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: dde:Dde_3214 hypothetical protein.


ensembl_gene_id: DvMF_1789
symbol: psd
gene_biotype: protein_coding
description:
  Phosphatidylserine decarboxylase related protein; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).


ensembl_gene_id: DvMF_1790
symbol: DvMF_1790
gene_biotype: protein_coding
description:
  TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: dde:Dde_3217 CDP-diacylglycerol--serine O-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.


ensembl_gene_id: DvMF_1791
symbol: leuA
gene_biotype: protein_coding
description:
  2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily.


ensembl_gene_id: DvMF_1792
symbol: leuC
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.


ensembl_gene_id: DvMF_1793
symbol: leuD
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 2 subfamily.


ensembl_gene_id: DvMF_1794
symbol: leuB
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.


ensembl_gene_id: DvMF_1798
symbol: DvMF_1798
gene_biotype: protein_coding
description:
  Sigma54 specific transcriptional acivator, PspF, Fis family; KEGG: dde:Dde_3227 Fis family transcriptional regulator; TIGRFAM: psp operon transcriptional activator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase.


ensembl_gene_id: DvMF_1799
symbol: DvMF_1799
gene_biotype: protein_coding
description:
  TIGRFAM: phage shock protein A; PFAM: PspA/IM30 family protein; KEGG: dde:Dde_3226 phage shock protein A.


ensembl_gene_id: DvMF_1801
symbol: DvMF_1801
gene_biotype: protein_coding
description:
  TIGRFAM: phage shock protein C; PFAM: PspC domain protein; KEGG: dde:Dde_3224 phage shock protein C, PspC.


ensembl_gene_id: DvMF_1803
symbol: DvMF_1803
gene_biotype: protein_coding
description:
  PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dde:Dde_0306 hypothetical protein.


ensembl_gene_id: DvMF_1804
symbol: DvMF_1804
gene_biotype: protein_coding
description:
  PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sat:SYN_00591 thioredoxin peroxidase.


ensembl_gene_id: DvMF_1805
symbol: DvMF_1805
gene_biotype: protein_coding
description:
  PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dde:Dde_0304 glyoxalase family protein.


ensembl_gene_id: DvMF_1808
symbol: DvMF_1808
gene_biotype: protein_coding
description:
  PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_0298 flagella basal body rod domain-containing protein.


ensembl_gene_id: DvMF_1809
symbol: folD
gene_biotype: protein_coding
description:
  Methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.


ensembl_gene_id: DvMF_1810
symbol: eno
gene_biotype: protein_coding
description:
  Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.


ensembl_gene_id: DvMF_1811
symbol: coaX
gene_biotype: protein_coding
description:
  Putative transcriptional acitvator, Baf family; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis; Belongs to the type III pantothenate kinase family.


ensembl_gene_id: DvMF_1814
symbol: DvMF_1814
gene_biotype: protein_coding
description:
  4Fe-4S ferredoxin iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.


ensembl_gene_id: DvMF_1819
symbol: DvMF_1819
gene_biotype: protein_coding
description:
  TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; KEGG: dde:Dde_0277 anaerobic ribonucleoside triphosphate reductase.


ensembl_gene_id: DvMF_1824
symbol: DvMF_1824
gene_biotype: protein_coding
description:
  SMART: metal-dependent phosphohydrolase HD region; KEGG: rci:RCIX977 putative metal-dependent phosphohydrolase (HD superfamily).


ensembl_gene_id: DvMF_1825
symbol: DvMF_1825
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_0271 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: DvMF_1826
symbol: DvMF_1826
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_0272 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: DvMF_1827
symbol: DvMF_1827
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0273 oligopeptide/dipeptide ABC transporter, permease protein.


ensembl_gene_id: DvMF_1828
symbol: DvMF_1828
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0274 oligopeptide/dipeptide ABC transporter, permease protein.


ensembl_gene_id: DvMF_1829
symbol: DvMF_1829
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 5; KEGG: dde:Dde_0275 oligopeptide/dipeptide ABC transporter, periplasmic oligopeptide/dipeptide-binding protein.


ensembl_gene_id: DvMF_1831
symbol: DvMF_1831
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; KEGG: tle:Tlet_2020 regulatory protein MarR.


ensembl_gene_id: DvMF_1832
symbol: DvMF_1832
gene_biotype: protein_coding
description:
  PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: dre:492779 zgc:101549 Pfam: DUF326 NeuB Phage_GPL SAF PROSITE: AFP_LIKE.


ensembl_gene_id: DvMF_1834
symbol: DvMF_1834
gene_biotype: protein_coding
description:
  PFAM: acylneuraminate cytidylyltransferase; KEGG: vvu:VV1_0803 CMP-N-acetylneuraminic acid synthetase.


ensembl_gene_id: DvMF_1836
symbol: DvMF_1836
gene_biotype: protein_coding
description:
  TIGRFAM: methyltransferase FkbM family; PFAM: glycosyl transferase family 2; KEGG: mrd:Mrad2831_1576 glycosyl transferase family 2.


ensembl_gene_id: DvMF_1837
symbol: DvMF_1837
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 2; KEGG: ret:RHE_CH00761 putative beta-glycosyltransferase protein.


ensembl_gene_id: DvMF_1839
symbol: DvMF_1839
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sus:Acid_0616 methyltransferase type 12.


ensembl_gene_id: DvMF_1840
symbol: DvMF_1840
gene_biotype: protein_coding
description:
  PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: dde:Dde_0439 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase.


ensembl_gene_id: DvMF_1842
symbol: DvMF_1842
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: dde:Dde_0431 putative glycosyl/glycerophosphate transferase involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC.


ensembl_gene_id: DvMF_1844
symbol: DvMF_1844
gene_biotype: protein_coding
description:
  PFAM: acylneuraminate cytidylyltransferase; KEGG: dde:Dde_3257 CMP-N-acetlyneuraminic acid synthetase.


ensembl_gene_id: DvMF_1845
symbol: DvMF_1845
gene_biotype: protein_coding
description:
  PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: dde:Dde_3256 N-acetylneuraminate synthase.


ensembl_gene_id: DvMF_1851
symbol: DvMF_1851
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dde:Dde_3254 hypothetical protein.


ensembl_gene_id: DvMF_1852
symbol: DvMF_1852
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: gbm:Gbem_3740 glycosyl transferase family 2.


ensembl_gene_id: DvMF_1854
symbol: DvMF_1854
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dde:Dde_0427 NAD-dependent epimerase/dehydratase family protein.


ensembl_gene_id: DvMF_1858
symbol: DvMF_1858
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_3233 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: DvMF_1859
symbol: DvMF_1859
gene_biotype: protein_coding
description:
  Putative two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dde:Dde_3234 two component Fis family transcriptional regulator.


ensembl_gene_id: DvMF_1860
symbol: DvMF_1860
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate:ferredoxin (flavodoxin) oxidoreductase; KEGG: dde:Dde_3237 pyruvate:ferredoxin (flavodoxin) oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.


ensembl_gene_id: DvMF_1861
symbol: DvMF_1861
gene_biotype: protein_coding
description:
  L-lactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.


ensembl_gene_id: DvMF_1863
symbol: DvMF_1863
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_3240 iron-sulfur cluster-binding protein.


ensembl_gene_id: DvMF_1864
symbol: DvMF_1864
gene_biotype: protein_coding
description:
  Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.


ensembl_gene_id: DvMF_1865
symbol: ackA
gene_biotype: protein_coding
description:
  Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.


ensembl_gene_id: DvMF_1868
symbol: DvMF_1868
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF162; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_3245 iron-sulfur cluster-binding protein.


ensembl_gene_id: DvMF_1873
symbol: DvMF_1873
gene_biotype: protein_coding
description:
  PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: ppd:Ppro_0838 radical SAM domain-containing protein.


ensembl_gene_id: DvMF_1875
symbol: DvMF_1875
gene_biotype: protein_coding
description:
  Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; KEGG: mrd:Mrad2831_2393 PAS/PAC sensor hybrid histidine kinase.


ensembl_gene_id: DvMF_1878
symbol: DvMF_1878
gene_biotype: protein_coding
description:
  PFAM: Hemerythrin HHE cation binding domain protein; KEGG: gbm:Gbem_2562 hemerythrin HHE cation binding domain protein.


ensembl_gene_id: DvMF_1879
symbol: DvMF_1879
gene_biotype: protein_coding
description:
  PFAM: regulatory protein LuxR; KEGG: swo:Swol_1080 ATP-dependent transcriptional regulator-like protein.


ensembl_gene_id: DvMF_1882
symbol: DvMF_1882
gene_biotype: protein_coding
description:
  PFAM: amino acid-binding ACT domain protein; KEGG: dde:Dde_0399 acetolactate synthase 1 regulatory subunit.


ensembl_gene_id: DvMF_1883
symbol: DvMF_1883
gene_biotype: protein_coding
description:
  TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: azo:azo1034 acetolactate synthase catalytic subunit.


ensembl_gene_id: DvMF_1885
symbol: DvMF_1885
gene_biotype: protein_coding
description:
  PFAM: conserved hypothetical protein; KEGG: pap:PSPA7_5649 hypothetical protein; Belongs to the LOG family.


ensembl_gene_id: DvMF_1887
symbol: DvMF_1887
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 2; KEGG: gsu:GSU3023 glycosyl transferase, group 1/2 family protein.


ensembl_gene_id: DvMF_1891
symbol: DvMF_1891
gene_biotype: protein_coding
description:
  Glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: lic:LIC12168 aspartate aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: DvMF_1894
symbol: DvMF_1894
gene_biotype: protein_coding
description:
  PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: lbl:LBL_1168 N-acetylneuraminic acid (sialic acid) synthetase.


ensembl_gene_id: DvMF_1896
symbol: DvMF_1896
gene_biotype: protein_coding
description:
  PFAM: transferase hexapeptide repeat containing protein; KEGG: amu:Amuc_0639 transferase hexapeptide repeat containing protein.


ensembl_gene_id: DvMF_1898
symbol: DvMF_1898
gene_biotype: protein_coding
description:
  PFAM: HpcH/HpaI aldolase; KEGG: dde:Dde_3685 HPCH/HPAI aldolase family protein; Belongs to the HpcH/HpaI aldolase family.


ensembl_gene_id: DvMF_1899
symbol: DvMF_1899
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dde:Dde_3686 NAD-dependent epimerase/dehydratase family protein.


ensembl_gene_id: DvMF_1900
symbol: DvMF_1900
gene_biotype: protein_coding
description:
  PFAM: acylneuraminate cytidylyltransferase; KEGG: dde:Dde_3687 3-deoxy-manno-octulosonate cytidylyltransferase.


ensembl_gene_id: DvMF_1902
symbol: DvMF_1902
gene_biotype: protein_coding
description:
  PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: dde:Dde_3689 D-isomer specific 2-hydroxyacid dehydrogenase family protein.


ensembl_gene_id: DvMF_1906
symbol: DvMF_1906
gene_biotype: protein_coding
description:
  PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dde:Dde_3693 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis-like; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: DvMF_1907
symbol: DvMF_1907
gene_biotype: protein_coding
description:
  Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: dde:Dde_2558 diguanylate cyclase/phosphodiesterase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: DvMF_1908
symbol: DvMF_1908
gene_biotype: protein_coding
description:
  TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: dde:Dde_3694 glucose-1-phosphate cytidylyl-transferase.


ensembl_gene_id: DvMF_1909
symbol: DvMF_1909
gene_biotype: protein_coding
description:
  TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: dde:Dde_3695 CDP-glucose-4,6-dehydratase, putative.


ensembl_gene_id: DvMF_1911
symbol: DvMF_1911
gene_biotype: protein_coding
description:
  PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: dde:Dde_3697 aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.


ensembl_gene_id: DvMF_1912
symbol: DvMF_1912
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 2; KEGG: dde:Dde_3698 glycosyl transferase, group 2 family protein.


ensembl_gene_id: DvMF_1917
symbol: DvMF_1917
gene_biotype: protein_coding
description:
  TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: amu:Amuc_1839 heavy metal translocating P-type ATPase.


ensembl_gene_id: DvMF_1918
symbol: DvMF_1918
gene_biotype: protein_coding
description:
  PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: dde:Dde_0168 extracellular solute-binding protein.


ensembl_gene_id: DvMF_1919
symbol: DvMF_1919
gene_biotype: protein_coding
description:
  TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0167 amino acid ABC transporter permease.


ensembl_gene_id: DvMF_1921
symbol: DvMF_1921
gene_biotype: protein_coding
description:
  TIGRFAM: A/G-specific adenine glycosylase; PFAM: NUDIX hydrolase; helix-hairpin-helix motif; HhH-GPD family protein; KEGG: dde:Dde_0212 A/G-specific DNA-adenine glycosylase.


ensembl_gene_id: DvMF_1926
symbol: DvMF_1926
gene_biotype: protein_coding
description:
  Transcriptional regulator, TraR/DksA family; PFAM: zinc finger DksA/TraR C4-type; KEGG: wsu:WS2102 hypothetical protein.


ensembl_gene_id: DvMF_1927
symbol: DvMF_1927
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 2; KEGG: dde:Dde_0215 glycosyl transferase, group 2 family protein.


ensembl_gene_id: DvMF_1931
symbol: DvMF_1931
gene_biotype: protein_coding
description:
  TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: drm:Dred_2756 TRAP dicarboxylate transporter, DctM subunit.


ensembl_gene_id: DvMF_1932
symbol: DvMF_1932
gene_biotype: protein_coding
description:
  TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: drm:Dred_2757 TRAP dicarboxylate transporter, DctP subunit.


ensembl_gene_id: DvMF_1933
symbol: DvMF_1933
gene_biotype: protein_coding
description:
  PAS modulated sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; KEGG: cbe:Cbei_3352 sigma54 specific transcriptional regulator, fis family.


ensembl_gene_id: DvMF_1936
symbol: DvMF_1936
gene_biotype: protein_coding
description:
  Deoxyribodipyrimidine photo-lyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: dde:Dde_0179 deoxyribodipyrimidine photo-lyase type II.


ensembl_gene_id: DvMF_1937
symbol: DvMF_1937
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; KEGG: dde:Dde_0178 response regulator receiver domain-containing protein.


ensembl_gene_id: DvMF_1939
symbol: purA
gene_biotype: protein_coding
description:
  Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.


ensembl_gene_id: DvMF_1940
symbol: DvMF_1940
gene_biotype: protein_coding
description:
  PFAM: Lytic transglycosylase catalytic; KEGG: dde:Dde_0175 transglycosylase SLT domain-containing protein.


ensembl_gene_id: DvMF_1942
symbol: DvMF_1942
gene_biotype: protein_coding
description:
  PFAM: AICARFT/IMPCHase bienzyme formylation region; KEGG: dde:Dde_0174 phosphoribosylaminoimidazolecarboxamide formyltransferase.


ensembl_gene_id: DvMF_1944
symbol: plsY
gene_biotype: protein_coding
description:
  Protein of unknown function DUF205; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.


ensembl_gene_id: DvMF_1945
symbol: DvMF_1945
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_0171 L-threonine synthase; TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit.


ensembl_gene_id: DvMF_1946
symbol: DvMF_1946
gene_biotype: protein_coding
description:
  PFAM: MGS domain protein; KEGG: dde:Dde_0377 phosphoribosylaminoimidazolecarboxamide formyltransferase.


ensembl_gene_id: DvMF_1947
symbol: hflX
gene_biotype: protein_coding
description:
  GTP-binding proten HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis.


ensembl_gene_id: DvMF_1948
symbol: DvMF_1948
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: dde:Dde_0374 rhodanese-like protein.


ensembl_gene_id: DvMF_1949
symbol: DvMF_1949
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF6 transmembrane; KEGG: amr:AM1_C0051 DUF6 domain transmembrane protein.


ensembl_gene_id: DvMF_1950
symbol: DvMF_1950
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein AraC type; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: pde:Pden_4239 methylated-DNA--protein-cysteine methyltransferase.


ensembl_gene_id: DvMF_1952
symbol: DvMF_1952
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 2; KEGG: dde:Dde_0337 glycosyl transferase, group 2 family protein.


ensembl_gene_id: DvMF_1956
symbol: DvMF_1956
gene_biotype: protein_coding
description:
  PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; KEGG: pth:PTH_2604 aldehyde:ferredoxin oxidoreductase.


ensembl_gene_id: DvMF_1957
symbol: DvMF_1957
gene_biotype: protein_coding
description:
  Extracellular solute-binding protein family 1; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.


ensembl_gene_id: DvMF_1958
symbol: DvMF_1958
gene_biotype: protein_coding
description:
  Ornithine carbamoyltransferase; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_3672 spermidine/putrescine ABC transporter membrane protein.


ensembl_gene_id: DvMF_1959
symbol: DvMF_1959
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lip:LI0830 ABC-type spermidine/putrescine transport system, permease component I.


ensembl_gene_id: DvMF_1960
symbol: potA
gene_biotype: protein_coding
description:
  Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.


ensembl_gene_id: DvMF_1962
symbol: aroE
gene_biotype: protein_coding
description:
  Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).


ensembl_gene_id: DvMF_1963
symbol: hisG
gene_biotype: protein_coding
description:
  ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Long subfamily.


ensembl_gene_id: DvMF_1964
symbol: hisI
gene_biotype: protein_coding
description:
  Phosphoribosyl-AMP cyclohydrolase; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.


ensembl_gene_id: DvMF_1965
symbol: DvMF_1965
gene_biotype: protein_coding
description:
  PFAM: class II aldolase/adducin family protein; protein of unknown function UPF0066; KEGG: dde:Dde_3569 hypothetical protein.


ensembl_gene_id: DvMF_1966
symbol: thiL
gene_biotype: protein_coding
description:
  Thiamine-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.


ensembl_gene_id: DvMF_1968
symbol: DvMF_1968
gene_biotype: protein_coding
description:
  PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: dde:Dde_3572 type I phosphodiesterase/nucleotide pyrophosphatase family protein.


ensembl_gene_id: DvMF_1969
symbol: DvMF_1969
gene_biotype: protein_coding
description:
  TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase; KEGG: gsu:GSU1550 4-oxalocrotonate tautomerase family protein.


ensembl_gene_id: DvMF_1971
symbol: DvMF_1971
gene_biotype: protein_coding
description:
  KEGG: psa:PST_3745 CRISPR-associated helicase Cas3 domain protein; TIGRFAM: CRISPR-associated helicase Cas3; PFAM: helicase domain protein; SMART: DEAD-like helicases.


ensembl_gene_id: DvMF_1972
symbol: DvMF_1972
gene_biotype: protein_coding
description:
  TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: psa:PST_3746 CRISPR-associated protein, CT1134 family.


ensembl_gene_id: DvMF_1973
symbol: DvMF_1973
gene_biotype: protein_coding
description:
  TIGRFAM: CRISPR-associated protein, Csd1 family; PFAM: CRISPR-associated protein CT1133; KEGG: xom:XOO_0796 hypothetical protein.


ensembl_gene_id: DvMF_1974
symbol: DvMF_1974
gene_biotype: protein_coding
description:
  TIGRFAM: CRISPR-associated protein, CT1132 family; CRISPR-associated protein, Csd2 family; PFAM: CRISPR-associated protein TM1801; KEGG: gme:Gmet_1067 CRISPR-associated TM1801 family protein.


ensembl_gene_id: DvMF_1975
symbol: DvMF_1975
gene_biotype: protein_coding
description:
  CRISPR-associated protein Cas4; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family.


ensembl_gene_id: DvMF_1976
symbol: cas1
gene_biotype: protein_coding
description:
  CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.


ensembl_gene_id: DvMF_1977
symbol: cas2
gene_biotype: protein_coding
description:
  CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.


ensembl_gene_id: DvMF_1979
symbol: DvMF_1979
gene_biotype: protein_coding
description:
  Hypothetical protein; KEGG: sus:Acid_7821 helix-hairpin-helix repeat-containing competence protein ComEA.


ensembl_gene_id: DvMF_1982
symbol: DvMF_1982
gene_biotype: protein_coding
description:
  KEGG: gsu:GSU2314 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: DvMF_1983
symbol: DvMF_1983
gene_biotype: protein_coding
description:
  Phosphoglycolate phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: hmo:HM1_1613 phosphoglycolate phosphatase, putative.


ensembl_gene_id: DvMF_1986
symbol: DvMF_1986
gene_biotype: protein_coding
description:
  Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.


ensembl_gene_id: DvMF_1987
symbol: DvMF_1987
gene_biotype: protein_coding
description:
  Pyruvate, water dikinase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: sfu:Sfum_0649 pyruvate, water dikinase.


ensembl_gene_id: DvMF_1989
symbol: DvMF_1989
gene_biotype: protein_coding
description:
  PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sfu:Sfum_0617 integral membrane sensor signal transduction histidine kinase.


ensembl_gene_id: DvMF_1992
symbol: DvMF_1992
gene_biotype: protein_coding
description:
  PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sfu:Sfum_0642 integral membrane sensor signal transduction histidine kinase.


ensembl_gene_id: DvMF_1993
symbol: DvMF_1993
gene_biotype: protein_coding
description:
  Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: sfu:Sfum_0643 two component, sigma54 specific, transcriptional regulator, fis family.


ensembl_gene_id: DvMF_1994
symbol: DvMF_1994
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: csa:Csal_1764 transcriptional regulator, GntR family.


ensembl_gene_id: DvMF_1995
symbol: DvMF_1995
gene_biotype: protein_coding
description:
  PFAM: Malate/L-lactate dehydrogenase; KEGG: mrd:Mrad2831_5976 malate/L-lactate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.


ensembl_gene_id: DvMF_2003
symbol: DvMF_2003
gene_biotype: protein_coding
description:
  PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; KEGG: csa:Csal_1766 altronate dehydratase.


ensembl_gene_id: DvMF_2009
symbol: DvMF_2009
gene_biotype: protein_coding
description:
  Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.


ensembl_gene_id: DvMF_2010
symbol: DvMF_2010
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; KEGG: dde:Dde_0384 response regulator receiver domain-containing protein.


ensembl_gene_id: DvMF_2011
symbol: DvMF_2011
gene_biotype: protein_coding
description:
  RNA polymerase, sigma 28 subunit, FliA/WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.


ensembl_gene_id: DvMF_2014
symbol: flhA
gene_biotype: protein_coding
description:
  Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.


ensembl_gene_id: DvMF_2015
symbol: flhB
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.


ensembl_gene_id: DvMF_2016
symbol: DvMF_2016
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.


ensembl_gene_id: DvMF_2017
symbol: DvMF_2017
gene_biotype: protein_coding
description:
  TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: mgm:Mmc1_1638 sulfate transporter.


ensembl_gene_id: DvMF_2019
symbol: DvMF_2019
gene_biotype: protein_coding
description:
  Dihydrouridine synthase DuS; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.


ensembl_gene_id: DvMF_2020
symbol: ispH
gene_biotype: protein_coding
description:
  Hydroxymethylbutenyl pyrophosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.


ensembl_gene_id: DvMF_2021
symbol: DvMF_2021
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; CheW domain protein; KEGG: dde:Dde_0391 response regulator receiver (CheY-like) modulated CheW protein.


ensembl_gene_id: DvMF_2022
symbol: DvMF_2022
gene_biotype: protein_coding
description:
  PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: gbm:Gbem_0222 transcriptional regulator, GntR family with aminotransferase domain.


ensembl_gene_id: DvMF_2023
symbol: DvMF_2023
gene_biotype: protein_coding
description:
  Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein; Functions as a redox protein with a potential of -325 mV.


ensembl_gene_id: DvMF_2024
symbol: DvMF_2024
gene_biotype: protein_coding
description:
  Pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: dde:Dde_0120 ribosomal large subunit pseudouridine synthase C; Belongs to the pseudouridine synthase RluA family.


ensembl_gene_id: DvMF_2026
symbol: DvMF_2026
gene_biotype: protein_coding
description:
  PFAM: Fmu (Sun) domain protein; KEGG: dde:Dde_0122 NOL1/NOP2/sun family protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.


ensembl_gene_id: DvMF_2027
symbol: cysQ
gene_biotype: protein_coding
description:
  Inositol monophosphatase; Converts adenosine-3',5'-bisphosphate (PAP) to AMP. Belongs to the inositol monophosphatase superfamily. CysQ family.


ensembl_gene_id: DvMF_2029
symbol: DvMF_2029
gene_biotype: protein_coding
description:
  PFAM: histone family protein DNA-binding protein; KEGG: dde:Dde_0125 histone-like DNA-binding protein; Belongs to the bacterial histone-like protein family.


ensembl_gene_id: DvMF_2031
symbol: DvMF_2031
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.


ensembl_gene_id: DvMF_2032
symbol: ftsE
gene_biotype: protein_coding
description:
  Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.


ensembl_gene_id: DvMF_2033
symbol: DvMF_2033
gene_biotype: protein_coding
description:
  Protein of unknown function DUF214; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.


ensembl_gene_id: DvMF_2034
symbol: ilvD
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_0116 dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; Belongs to the IlvD/Edd family.


ensembl_gene_id: DvMF_2035
symbol: metE
gene_biotype: protein_coding
description:
  5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.


ensembl_gene_id: DvMF_2036
symbol: DvMF_2036
gene_biotype: protein_coding
description:
  Methyltransferase type 11; PFAM: UbiE/COQ5 methyltransferase; Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: dde:Dde_0009 hypothetical protein.


ensembl_gene_id: DvMF_2037
symbol: hisS
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_0011 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein.


ensembl_gene_id: DvMF_2038
symbol: aspS
gene_biotype: protein_coding
description:
  aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.


ensembl_gene_id: DvMF_2039
symbol: def
gene_biotype: protein_coding
description:
  Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.


ensembl_gene_id: DvMF_2040
symbol: fmt
gene_biotype: protein_coding
description:
  methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.


ensembl_gene_id: DvMF_2042
symbol: DvMF_2042
gene_biotype: protein_coding
description:
  NusB/RsmB/TIM44; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: dde:Dde_0017 sun protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.


ensembl_gene_id: DvMF_2045
symbol: DvMF_2045
gene_biotype: protein_coding
description:
  TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: dde:Dde_0029 chromosome segregation DNA-binding protein; Belongs to the ParB family.


ensembl_gene_id: DvMF_2048
symbol: DvMF_2048
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dde:Dde_0033 NAD-dependent epimerase/dehydratase family protein.


ensembl_gene_id: DvMF_2051
symbol: DvMF_2051
gene_biotype: protein_coding
description:
  Phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.


ensembl_gene_id: DvMF_2053
symbol: queA
gene_biotype: protein_coding
description:
  S-adenosylmethionine/tRNA-ribosyltransferase- isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).


ensembl_gene_id: DvMF_2054
symbol: DvMF_2054
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0043 2-oxoglutarate ferredoxin oxidoreductase, delta subunit.


ensembl_gene_id: DvMF_2055
symbol: DvMF_2055
gene_biotype: protein_coding
description:
  PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Transketolase domain protein; KEGG: dde:Dde_0044 2-ketoisovalerate ferredoxin reductase.


ensembl_gene_id: DvMF_2056
symbol: DvMF_2056
gene_biotype: protein_coding
description:
  PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: dde:Dde_0045 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit, putative.


ensembl_gene_id: DvMF_2057
symbol: DvMF_2057
gene_biotype: protein_coding
description:
  PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: dde:Dde_0046 2-oxoglutarate ferredoxin oxidoreductase, gamma subunit.


ensembl_gene_id: DvMF_2062
symbol: DvMF_2062
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gbm:Gbem_2109 ABC transporter related protein.


ensembl_gene_id: DvMF_2065
symbol: DvMF_2065
gene_biotype: protein_coding
description:
  TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: dde:Dde_0414 hypothetical protein; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.


ensembl_gene_id: DvMF_2066
symbol: DvMF_2066
gene_biotype: protein_coding
description:
  Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: sfu:Sfum_3773 heavy metal translocating P-type ATPase.


ensembl_gene_id: DvMF_2069
symbol: topA
gene_biotype: protein_coding
description:
  DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]


ensembl_gene_id: DvMF_2075
symbol: fumC
gene_biotype: protein_coding
description:
  Fumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.


ensembl_gene_id: DvMF_2077
symbol: DvMF_2077
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_0210 AhpF family protein/thioredoxin reductase.


ensembl_gene_id: DvMF_2079
symbol: DvMF_2079
gene_biotype: protein_coding
description:
  NmrA family protein; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: dde:Dde_0236 hypothetical protein.


ensembl_gene_id: DvMF_2082
symbol: DvMF_2082
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain.


ensembl_gene_id: DvMF_2083
symbol: gyrB
gene_biotype: protein_coding
description:
  DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: DvMF_2084
symbol: gyrA
gene_biotype: protein_coding
description:
  DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.


ensembl_gene_id: DvMF_2087
symbol: asnS
gene_biotype: protein_coding
description:
  TIGRFAM: asparaginyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: dde:Dde_0099 asparaginyl-tRNA synthetase.


ensembl_gene_id: DvMF_2094
symbol: DvMF_2094
gene_biotype: protein_coding
description:
  Multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_0878 periplasmic sensor signal transduction histidine kinase.


ensembl_gene_id: DvMF_2098
symbol: DvMF_2098
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: mba:Mbar_A3306 efflux PumP antibiotic resistance protein.


ensembl_gene_id: DvMF_2099
symbol: DvMF_2099
gene_biotype: protein_coding
description:
  TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: dde:Dde_0104 L-glutamine synthetase.


ensembl_gene_id: DvMF_2100
symbol: DvMF_2100
gene_biotype: protein_coding
description:
  KEGG: ang:An12g06380 hypothetical protein Pfam: Collagen PROSITE: ALA_RICH ASP_RICH GLY_RICH SER_RICH.


ensembl_gene_id: DvMF_2101
symbol: DvMF_2101
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: bvi:Bcep1808_3407 major facilitator transporter.


ensembl_gene_id: DvMF_2107
symbol: DvMF_2107
gene_biotype: protein_coding
description:
  KEGG: dola:16964; PFAM: response regulator receiver; AAA ATPase central domain protein; peptidase S16 lon domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase.


ensembl_gene_id: DvMF_2109
symbol: DvMF_2109
gene_biotype: protein_coding
description:
  Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: mxa:MXAN_2516 sigma-54 dependent DNA-binding response regulator.


ensembl_gene_id: DvMF_2110
symbol: DvMF_2110
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_3778 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.


ensembl_gene_id: DvMF_2117
symbol: DvMF_2117
gene_biotype: protein_coding
description:
  PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_3772 TPR repeat-containing protein.


ensembl_gene_id: DvMF_2120
symbol: DvMF_2120
gene_biotype: protein_coding
description:
  4Fe-4S ferredoxin iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. This ferredoxin serves as a carrier for pyruvate dehydrogenase.


ensembl_gene_id: DvMF_2121
symbol: DvMF_2121
gene_biotype: protein_coding
description:
  2-alkenal reductase; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: dde:Dde_3776 PDZ/DHR/GLGF.


ensembl_gene_id: DvMF_2122
symbol: cobT
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).


ensembl_gene_id: DvMF_2123
symbol: DvMF_2123
gene_biotype: protein_coding
description:
  TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR; KEGG: dde:Dde_3474 chromosome replication initiation inhibitor protein.


ensembl_gene_id: DvMF_2125
symbol: DvMF_2125
gene_biotype: protein_coding
description:
  PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: dde:Dde_0152 DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family.


ensembl_gene_id: DvMF_2128
symbol: ubiX
gene_biotype: protein_coding
description:
  3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.


ensembl_gene_id: DvMF_2131
symbol: lgt
gene_biotype: protein_coding
description:
  Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.


ensembl_gene_id: DvMF_2133
symbol: DvMF_2133
gene_biotype: protein_coding
description:
  Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_3782 multi-sensor signal transduction histidine kinase.


ensembl_gene_id: DvMF_2135
symbol: DvMF_2135
gene_biotype: protein_coding
description:
  TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: aav:Aave_3447 TRAP dicarboxylate transporter, DctP subunit.


ensembl_gene_id: DvMF_2136
symbol: DvMF_2136
gene_biotype: protein_coding
description:
  PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pde:Pden_3481 tripartite ATP-independent periplasmic transporter, DctQ component.


ensembl_gene_id: DvMF_2137
symbol: DvMF_2137
gene_biotype: protein_coding
description:
  TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bbr:BB1744 hypothetical protein.


ensembl_gene_id: DvMF_2138
symbol: DvMF_2138
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: npu:Npun_F4963 transcriptional regulator, LysR family.


ensembl_gene_id: DvMF_2140
symbol: DvMF_2140
gene_biotype: protein_coding
description:
  PFAM: NAD(P)H dehydrogenase (quinone); KEGG: dde:Dde_1618 flavodoxin-like fold domain-containing protein.


ensembl_gene_id: DvMF_2146
symbol: DvMF_2146
gene_biotype: protein_coding
description:
  Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family.  In the N-terminal section; belongs to the proline dehydrogenase family.


ensembl_gene_id: DvMF_2148
symbol: DvMF_2148
gene_biotype: protein_coding
description:
  Multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_0110 multi-sensor signal transduction histidine kinase.


ensembl_gene_id: DvMF_2149
symbol: DvMF_2149
gene_biotype: protein_coding
description:
  Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dde:Dde_0109 two component Fis family transcriptional regulator.


ensembl_gene_id: DvMF_2152
symbol: DvMF_2152
gene_biotype: protein_coding
description:
  PFAM: thioesterase superfamily protein; KEGG: rci:LRC474 putative phenylacetic acid degradation protein.


ensembl_gene_id: DvMF_2153
symbol: DvMF_2153
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_1552 Fis family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold-4 domain protein; SMART: AAA ATPase.


ensembl_gene_id: DvMF_2156
symbol: DvMF_2156
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: sfu:Sfum_2391 ABC transporter related.


ensembl_gene_id: DvMF_2158
symbol: DvMF_2158
gene_biotype: protein_coding
description:
  PFAM: regulatory protein TetR; Transcriptional regulator TetR; KEGG: pfl:PFL_5951 TetR family transcriptional regulator.


ensembl_gene_id: DvMF_2159
symbol: DvMF_2159
gene_biotype: protein_coding
description:
  TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: sfu:Sfum_2809 RND efflux system, outer membrane lipoprotein, NodT family.


ensembl_gene_id: DvMF_2162
symbol: DvMF_2162
gene_biotype: protein_coding
description:
  TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: cvi:CV_0433 outer membrane efflux protein.


ensembl_gene_id: DvMF_2163
symbol: DvMF_2163
gene_biotype: protein_coding
description:
  TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: cvi:CV_0434 acriflavin resistance protein D.


ensembl_gene_id: DvMF_2164
symbol: DvMF_2164
gene_biotype: protein_coding
description:
  TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cvi:CV_0435 multidrug efflux membrane permease; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.


ensembl_gene_id: DvMF_2165
symbol: DvMF_2165
gene_biotype: protein_coding
description:
  PFAM: regulatory protein TetR; Transcriptional regulator TetR; KEGG: sfu:Sfum_3173 transcriptional regulator, TetR family.


ensembl_gene_id: DvMF_2167
symbol: DvMF_2167
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; KEGG: dsy:DSY3432 hypothetical protein.


ensembl_gene_id: DvMF_2169
symbol: DvMF_2169
gene_biotype: protein_coding
description:
  PFAM: phospholipid/glycerol acyltransferase; KEGG: dde:Dde_3661 phospholipid/glycerol acyltransferase.


ensembl_gene_id: DvMF_2175
symbol: DvMF_2175
gene_biotype: protein_coding
description:
  PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: dde:Dde_0157 GntR family transcriptional regulator.


ensembl_gene_id: DvMF_2177
symbol: DvMF_2177
gene_biotype: protein_coding
description:
  PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: dde:Dde_0092 hydantoinase/oxoprolinase family protein.


ensembl_gene_id: DvMF_2178
symbol: DvMF_2178
gene_biotype: protein_coding
description:
  TIGRFAM: export-related chaperone CsaA; PFAM: t-RNA-binding domain protein; KEGG: asa:ASA_3792 chaperone CsaA.


ensembl_gene_id: DvMF_2179
symbol: DvMF_2179
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sfu:Sfum_1190 methyltransferase type 11.


ensembl_gene_id: DvMF_2180
symbol: DvMF_2180
gene_biotype: protein_coding
description:
  PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: ppd:Ppro_3699 hypothetical protein.


ensembl_gene_id: DvMF_2181
symbol: DvMF_2181
gene_biotype: protein_coding
description:
  PFAM: heat shock protein Hsp20; KEGG: rca:Rcas_4342 heat shock protein HSP20; Belongs to the small heat shock protein (HSP20) family.


ensembl_gene_id: DvMF_2183
symbol: glcB
gene_biotype: protein_coding
description:
  Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.


ensembl_gene_id: DvMF_2186
symbol: DvMF_2186
gene_biotype: protein_coding
description:
  PFAM: Dual specificity protein phosphatase; KEGG: dde:Dde_0605 protein tyrosine phosphatase / dual specificity protein phosphatase.


ensembl_gene_id: DvMF_2187
symbol: DvMF_2187
gene_biotype: protein_coding
description:
  PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: dde:Dde_0604 pyruvate,water dikinase.


ensembl_gene_id: DvMF_2188
symbol: DvMF_2188
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; KEGG: dde:Dde_0603 response regulator receiver domain-containing protein.


ensembl_gene_id: DvMF_2189
symbol: DvMF_2189
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_0602 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: DvMF_2190
symbol: DvMF_2190
gene_biotype: protein_coding
description:
  TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: dde:Dde_0601 phosphonate-binding periplasmic protein.


ensembl_gene_id: DvMF_2196
symbol: DvMF_2196
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD linked oxidase domain protein; KEGG: dde:Dde_3604 oxidoreductase.


ensembl_gene_id: DvMF_2198
symbol: DvMF_2198
gene_biotype: protein_coding
description:
  PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; KEGG: dde:Dde_3603 DEAD/DEAH box helicase-like.


ensembl_gene_id: DvMF_2200
symbol: DvMF_2200
gene_biotype: protein_coding
description:
  Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: lip:LI0877 response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.


ensembl_gene_id: DvMF_2201
symbol: DvMF_2201
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dde:Dde_3598 periplasmic sensor signal transduction histidine kinase.


ensembl_gene_id: DvMF_2204
symbol: DvMF_2204
gene_biotype: protein_coding
description:
  Aminotransferase class I and II; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: dde:Dde_3596 L-aspartate aminotransferase.


ensembl_gene_id: DvMF_2205
symbol: sfsA
gene_biotype: protein_coding
description:
  PFAM: sugar fermentation stimulation protein; KEGG: dde:Dde_3594 sugar fermentation stimulation protein; Belongs to the SfsA family.


ensembl_gene_id: DvMF_2207
symbol: era
gene_biotype: protein_coding
description:
  GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.


ensembl_gene_id: DvMF_2208
symbol: DvMF_2208
gene_biotype: protein_coding
description:
  Alanine racemase domain protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.


ensembl_gene_id: DvMF_2213
symbol: DvMF_2213
gene_biotype: protein_coding
description:
  TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: dde:Dde_3585 surface presentation of antigens (SpoA) protein.


ensembl_gene_id: DvMF_2214
symbol: DvMF_2214
gene_biotype: protein_coding
description:
  PFAM: flagellar biosynthesis protein FliO; KEGG: dde:Dde_3584 flagellar biosynthesis protein, FliO, putative.


ensembl_gene_id: DvMF_2215
symbol: fliP
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.


ensembl_gene_id: DvMF_2216
symbol: fliQ
gene_biotype: protein_coding
description:
  Flagellar biosynthetic protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.


ensembl_gene_id: DvMF_2217
symbol: DvMF_2217
gene_biotype: protein_coding
description:
  PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: dde:Dde_3581 RNA methyltransferase TrmH, group 3; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.


ensembl_gene_id: DvMF_2218
symbol: DvMF_2218
gene_biotype: protein_coding
description:
  PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; KEGG: dde:Dde_3580 peptidoglycan-binding LysM.


ensembl_gene_id: DvMF_2220
symbol: DvMF_2220
gene_biotype: protein_coding
description:
  PFAM: lipolytic protein G-D-S-L family; KEGG: dde:Dde_0413 putative acyl-CoA thioesterase precursor.


ensembl_gene_id: DvMF_2223
symbol: DvMF_2223
gene_biotype: protein_coding
description:
  Diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid.


ensembl_gene_id: DvMF_2224
symbol: serS
gene_biotype: protein_coding
description:
  seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).


ensembl_gene_id: DvMF_2227
symbol: DvMF_2227
gene_biotype: protein_coding
description:
  PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dde:Dde_0204 hypothetical protein.


ensembl_gene_id: DvMF_2230
symbol: DvMF_2230
gene_biotype: protein_coding
description:
  TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: dde:Dde_0074 TatD-related deoxyribonuclease.


ensembl_gene_id: DvMF_2233
symbol: DvMF_2233
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_3028 carbon-monoxide dehydrogenase, catalytic subunit; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane.


ensembl_gene_id: DvMF_2234
symbol: DvMF_2234
gene_biotype: protein_coding
description:
  Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: dde:Dde_3027 Crp/FNR family transcriptional regulator.


ensembl_gene_id: DvMF_2235
symbol: mtnA
gene_biotype: protein_coding
description:
  Translation initiation factor, aIF-2BI family; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).


ensembl_gene_id: DvMF_2238
symbol: DvMF_2238
gene_biotype: protein_coding
description:
  PFAM: Tir chaperone family protein; KEGG: eta:ETA_05380 potential ORFB-specific chaperone, encodes a homolog of virulence/avirulence effector proteins secreted via the type III pathway.


ensembl_gene_id: DvMF_2241
symbol: DvMF_2241
gene_biotype: protein_coding
description:
  TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: bcm:Bcenmc03_2357 benzoate transporter.


ensembl_gene_id: DvMF_2242
symbol: DvMF_2242
gene_biotype: protein_coding
description:
  Putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; KEGG: gsu:GSU2576 HD domain-containing protein.


ensembl_gene_id: DvMF_2245
symbol: DvMF_2245
gene_biotype: protein_coding
description:
  Methyltransferase type 11; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: deh:cbdb_A1379 SAM-dependent methyltransferase.


ensembl_gene_id: DvMF_2246
symbol: DvMF_2246
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: gur:Gura_1198 transcriptional regulator, LysR family.


ensembl_gene_id: DvMF_2247
symbol: DvMF_2247
gene_biotype: protein_coding
description:
  TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: dde:Dde_1696 hemolysin III family channel protein.


ensembl_gene_id: DvMF_2248
symbol: ftsY
gene_biotype: protein_coding
description:
  Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.


ensembl_gene_id: DvMF_2249
symbol: DvMF_2249
gene_biotype: protein_coding
description:
  Signal transduction histidine kinase, nitrogen specific, NtrB; KEGG: dde:Dde_0558 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.


ensembl_gene_id: DvMF_2250
symbol: DvMF_2250
gene_biotype: protein_coding
description:
  PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: dde:Dde_0339 OMPP1/FadL/TodX family outer membrane protein.


ensembl_gene_id: DvMF_2252
symbol: DvMF_2252
gene_biotype: protein_coding
description:
  PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: dde:Dde_0341 DEAD/DEAH box helicase-like.


ensembl_gene_id: DvMF_2254
symbol: cbiA
gene_biotype: protein_coding
description:
  Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.


ensembl_gene_id: DvMF_2257
symbol: DvMF_2257
gene_biotype: protein_coding
description:
  PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_0347 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: DvMF_2263
symbol: der
gene_biotype: protein_coding
description:
  Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.


ensembl_gene_id: DvMF_2264
symbol: DvMF_2264
gene_biotype: protein_coding
description:
  TIGRFAM: DNA binding domain protein, excisionase family; KEGG: dde:Dde_0119 excisionase/Xis, DNA-binding.


ensembl_gene_id: DvMF_2267
symbol: DvMF_2267
gene_biotype: protein_coding
description:
  PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: dde:Dde_0064 hypothetical protein.


ensembl_gene_id: DvMF_2268
symbol: ilvE
gene_biotype: protein_coding
description:
  Branched-chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.


ensembl_gene_id: DvMF_2269
symbol: dnaX
gene_biotype: protein_coding
description:
  DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.


ensembl_gene_id: DvMF_2270
symbol: DvMF_2270
gene_biotype: protein_coding
description:
  Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.


ensembl_gene_id: DvMF_2271
symbol: recR
gene_biotype: protein_coding
description:
  Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.


ensembl_gene_id: DvMF_2273
symbol: DvMF_2273
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_0370 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: DvMF_2274
symbol: DvMF_2274
gene_biotype: protein_coding
description:
  Three-deoxy-D-manno-octulosonic-acid transferase domain protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.


ensembl_gene_id: DvMF_2275
symbol: DvMF_2275
gene_biotype: protein_coding
description:
  SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_0365 metal dependent phosphohydrolase.


ensembl_gene_id: DvMF_2276
symbol: hypD
gene_biotype: protein_coding
description:
  PFAM: hydrogenase formation HypD protein; KEGG: dde:Dde_0364 hydrogenase expression/formation protein HypD; Belongs to the HypD family.


ensembl_gene_id: DvMF_2277
symbol: hypE
gene_biotype: protein_coding
description:
  TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: dde:Dde_0363 hydrogenase expression/formation protein HypE.


ensembl_gene_id: DvMF_2279
symbol: DvMF_2279
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0362 sugar transferase involved in lipopolysaccharide synthesis-like.


ensembl_gene_id: DvMF_2280
symbol: DvMF_2280
gene_biotype: protein_coding
description:
  PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; KEGG: dde:Dde_0358 NAD-dependent epimerase/dehydratase family protein.


ensembl_gene_id: DvMF_2284
symbol: DvMF_2284
gene_biotype: protein_coding
description:
  Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.


ensembl_gene_id: DvMF_2285
symbol: DvMF_2285
gene_biotype: protein_coding
description:
  TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_0355 flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.


ensembl_gene_id: DvMF_2286
symbol: fliE
gene_biotype: protein_coding
description:
  TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: lip:LI0858 flagellar hook-basal body protein.


ensembl_gene_id: DvMF_2287
symbol: DvMF_2287
gene_biotype: protein_coding
description:
  Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.


ensembl_gene_id: DvMF_2290
symbol: DvMF_2290
gene_biotype: protein_coding
description:
  Flagellar protein export ATPase FliI; KEGG: dde:Dde_0350 ATPase FliI/YscN; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; SMART: AAA ATPase.


ensembl_gene_id: DvMF_2291
symbol: DvMF_2291
gene_biotype: protein_coding
description:
  PFAM: phosphoesterase PA-phosphatase related; KEGG: dde:Dde_0373 phosphoesterase, PA-phosphatase related.


ensembl_gene_id: DvMF_2294
symbol: rpoZ
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.


ensembl_gene_id: DvMF_2295
symbol: dnaJ
gene_biotype: protein_coding
description:
  Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]


ensembl_gene_id: DvMF_2300
symbol: DvMF_2300
gene_biotype: protein_coding
description:
  Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; KEGG: mgm:Mmc1_3395 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).


ensembl_gene_id: DvMF_2301
symbol: moaC
gene_biotype: protein_coding
description:
  Molybdenum cofactor biosynthesis protein C; Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC family.


ensembl_gene_id: DvMF_2304
symbol: hisF
gene_biotype: protein_coding
description:
  Imidazoleglycerol phosphate synthase, cyclase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.


ensembl_gene_id: DvMF_2305
symbol: hisH
gene_biotype: protein_coding
description:
  Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.


ensembl_gene_id: DvMF_2306
symbol: carB
gene_biotype: protein_coding
description:
  TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: dde:Dde_0333 carbamoyl-phosphate synthase large subunit; Belongs to the CarB family.


ensembl_gene_id: DvMF_2307
symbol: purF
gene_biotype: protein_coding
description:
  Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.


ensembl_gene_id: DvMF_2308
symbol: DvMF_2308
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_0335 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); Belongs to the SIS family. GutQ/KpsF subfamily.


ensembl_gene_id: DvMF_2313
symbol: dinB
gene_biotype: protein_coding
description:
  DNA-directed DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.


ensembl_gene_id: DvMF_2316
symbol: DvMF_2316
gene_biotype: protein_coding
description:
  PFAM: glutamine amidotransferase class-I; KEGG: dde:Dde_3617 aminodeoxychorismate synthase, glutamine amidotransferase subunit.


ensembl_gene_id: DvMF_2318
symbol: DvMF_2318
gene_biotype: protein_coding
description:
  PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: sth:STH1192 5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.


ensembl_gene_id: DvMF_2320
symbol: DvMF_2320
gene_biotype: protein_coding
description:
  PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: gvi:glr3759 probable 3-hydroxyisobutyrate dehydrogenase.


ensembl_gene_id: DvMF_2322
symbol: DvMF_2322
gene_biotype: protein_coding
description:
  PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase_; KEGG: emi:Emin_0772 iron-containing alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.


ensembl_gene_id: DvMF_2324
symbol: DvMF_2324
gene_biotype: protein_coding
description:
  KEGG: dac:Daci_1508 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.


ensembl_gene_id: DvMF_2325
symbol: DvMF_2325
gene_biotype: protein_coding
description:
  TIGRFAM: ectoine/hydroxyectoine ABC transporter solute-binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: bpt:Bpet2825 putative extracellular solute-binding protein.


ensembl_gene_id: DvMF_2327
symbol: DvMF_2327
gene_biotype: protein_coding
description:
  TIGRFAM: pyridine nucleotide-disulfide oxidoreductase family protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_2562 pyridine nucleotide-disulfide oxidoreductase.


ensembl_gene_id: DvMF_2328
symbol: DvMF_2328
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase group 1; KEGG: dde:Dde_3613 glycosyl transferase domain-containing protein.


ensembl_gene_id: DvMF_2329
symbol: DvMF_2329
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase family 2; KEGG: dde:Dde_3612 glycosyl transferase, group 2 family protein.


ensembl_gene_id: DvMF_2332
symbol: DvMF_2332
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; KEGG: dde:Dde_3609 response regulator receiver domain-containing protein.


ensembl_gene_id: DvMF_2333
symbol: DvMF_2333
gene_biotype: protein_coding
description:
  Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dol:Dole_1356 histidine kinase.


ensembl_gene_id: DvMF_2336
symbol: DvMF_2336
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_3607 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib.


ensembl_gene_id: DvMF_2338
symbol: DvMF_2338
gene_biotype: protein_coding
description:
  rfaE bifunctional protein; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose.


ensembl_gene_id: DvMF_2340
symbol: DvMF_2340
gene_biotype: protein_coding
description:
  PFAM: sigma-54 factor interaction domain-containing protein; histidine kinase HAMP region domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dde:Dde_0697 response regulator receiver domain-containing protein.


ensembl_gene_id: DvMF_2348
symbol: DvMF_2348
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0308 ABC transporter, permease protein, putative.


ensembl_gene_id: DvMF_2349
symbol: DvMF_2349
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0309 ABC transporter, permease protein, putative.


ensembl_gene_id: DvMF_2350
symbol: DvMF_2350
gene_biotype: protein_coding
description:
  Diguanylate cyclase with PAS/PAC and GAF sensors; KEGG: syf:Synpcc7942_1811 diguanylate cyclase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.


ensembl_gene_id: DvMF_2351
symbol: mltG
gene_biotype: protein_coding
description:
  Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.


ensembl_gene_id: DvMF_2352
symbol: DvMF_2352
gene_biotype: protein_coding
description:
  Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.


ensembl_gene_id: DvMF_2353
symbol: DvMF_2353
gene_biotype: protein_coding
description:
  FAD linked oxidase domain protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: dde:Dde_0312 oxidoreductase.


ensembl_gene_id: DvMF_2355
symbol: DvMF_2355
gene_biotype: protein_coding
description:
  TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC domain; zinc finger HypF domain protein; KEGG: dde:Dde_0555 (NiFe) hydrogenase maturation protein HypF.


ensembl_gene_id: DvMF_2356
symbol: DvMF_2356
gene_biotype: protein_coding
description:
  Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: dde:Dde_0556 MerR family transcriptional regulator.


ensembl_gene_id: DvMF_2358
symbol: DvMF_2358
gene_biotype: protein_coding
description:
  PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: cau:Caur_1401 L-aspartate oxidase.


ensembl_gene_id: DvMF_2359
symbol: pal
gene_biotype: protein_coding
description:
  Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.


ensembl_gene_id: DvMF_2360
symbol: DvMF_2360
gene_biotype: protein_coding
description:
  TIGRFAM: Tol-Pal system beta propeller repeat protein TolB; PFAM: WD40 domain protein beta Propeller; KEGG: lip:LI0692 periplasmic component of the Tol biopolymer transport system.


ensembl_gene_id: DvMF_2363
symbol: DvMF_2363
gene_biotype: protein_coding
description:
  TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dde:Dde_3630 biopolymer ExbD/TolR family transporter.


ensembl_gene_id: DvMF_2366
symbol: fur-2
gene_biotype: protein_coding
description:
  Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: dde:Dde_3674 ferric uptake regulator family protein; Belongs to the Fur family.


ensembl_gene_id: DvMF_2368
symbol: DvMF_2368
gene_biotype: protein_coding
description:
  PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: sfu:Sfum_0689 rubredoxin-type Fe(Cys)4 protein; Belongs to the rubredoxin family.


ensembl_gene_id: DvMF_2369
symbol: DvMF_2369
gene_biotype: protein_coding
description:
  PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_3645 TPR repeat-containing protein.


ensembl_gene_id: DvMF_2370
symbol: carA
gene_biotype: protein_coding
description:
  TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase small chain; KEGG: dde:Dde_3646 carbamoyl phosphate synthase small subunit; Belongs to the CarA family.


ensembl_gene_id: DvMF_2371
symbol: kdsB
gene_biotype: protein_coding
description:
  3-deoxy-D-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.


ensembl_gene_id: DvMF_2372
symbol: prfC
gene_biotype: protein_coding
description:
  Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.


ensembl_gene_id: DvMF_2373
symbol: DvMF_2373
gene_biotype: protein_coding
description:
  KEGG: mac:MA2013 sensory transduction histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; SMART: PAC repeat-containing protein.


ensembl_gene_id: DvMF_2374
symbol: DvMF_2374
gene_biotype: protein_coding
description:
  Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.


ensembl_gene_id: DvMF_2375
symbol: queH
gene_biotype: protein_coding
description:
  Protein of unknown function DUF208; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr).


ensembl_gene_id: DvMF_2376
symbol: DvMF_2376
gene_biotype: protein_coding
description:
  TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; ribonuclease E and G; KEGG: dde:Dde_0537 ribonuclease E.


ensembl_gene_id: DvMF_2378
symbol: DvMF_2378
gene_biotype: protein_coding
description:
  tRNA (adenine-N(1)-)-methyltransferase; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA.


ensembl_gene_id: DvMF_2382
symbol: asd
gene_biotype: protein_coding
description:
  Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.


ensembl_gene_id: DvMF_2383
symbol: DvMF_2383
gene_biotype: protein_coding
description:
  PFAM: aminotransferase class IV; KEGG: dde:Dde_0255 branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase.


ensembl_gene_id: DvMF_2384
symbol: DvMF_2384
gene_biotype: protein_coding
description:
  PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0256 glycosyl transferase, group 1 family protein.


ensembl_gene_id: DvMF_2388
symbol: DvMF_2388
gene_biotype: protein_coding
description:
  Ferredoxin-dependent glutamate synthase; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; ferredoxin-dependent glutamate synthase; KEGG: sfu:Sfum_1724 ferredoxin-dependent glutamate synthase; Belongs to the glutamate synthase family.


ensembl_gene_id: DvMF_2389
symbol: DvMF_2389
gene_biotype: protein_coding
description:
  PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; glutamate synthase alpha subunit domain protein; KEGG: sfu:Sfum_1723 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.


ensembl_gene_id: DvMF_2391
symbol: DvMF_2391
gene_biotype: protein_coding
description:
  PFAM: Arsenical resistance operon trans-acting repressor ArsD; KEGG: swo:Swol_0937 arsenical resistance operon trans-acting repressor.


ensembl_gene_id: DvMF_2392
symbol: DvMF_2392
gene_biotype: protein_coding
description:
  Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; KEGG: psa:PST_0241 arsenic resistance transcriptional regulator.


ensembl_gene_id: DvMF_2398
symbol: DvMF_2398
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rru:Rru_A2273 nickel transporter ATP-binding protein.


ensembl_gene_id: DvMF_2399
symbol: DvMF_2399
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: kpn:KPN_03853 ATP-binding protein of nickel transport system.


ensembl_gene_id: DvMF_2400
symbol: DvMF_2400
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ppw:PputW619_3007 nickel ABC transporter, permease subunit NikC.


ensembl_gene_id: DvMF_2401
symbol: DvMF_2401
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mrd:Mrad2831_6075 nickel ABC transporter, permease subunit NikB.


ensembl_gene_id: DvMF_2402
symbol: DvMF_2402
gene_biotype: protein_coding
description:
  KEGG: rru:Rru_A2277 nickel ABC transporter, periplasmic nickel-binding; TIGRFAM: nickel ABC transporter, periplasmic nickel-binding protein; PFAM: extracellular solute-binding protein family 5.


ensembl_gene_id: DvMF_2408
symbol: DvMF_2408
gene_biotype: protein_coding
description:
  PFAM: major facilitator superfamily MFS_1; KEGG: bpe:BP2229 putative inner membrane transport protein.


ensembl_gene_id: DvMF_2410
symbol: DvMF_2410
gene_biotype: protein_coding
description:
  Protein serine/threonine phosphatase; PFAM: histidine kinase HAMP region domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: lip:LI1150 putative regulator.


ensembl_gene_id: DvMF_2411
symbol: DvMF_2411
gene_biotype: protein_coding
description:
  Sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: lip:LI1151 transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains.


ensembl_gene_id: DvMF_2412
symbol: DvMF_2412
gene_biotype: protein_coding
description:
  TIGRFAM: type III secretion protein, YscU/HrpY family; PFAM: type III secretion exporter; KEGG: lip:LI0551 translocation protein in type III secretion.


ensembl_gene_id: DvMF_2413
symbol: DvMF_2413
gene_biotype: protein_coding
description:
  TIGRFAM: type III secretion protein SpaR/YscT/HrcT; PFAM: type III secretion system inner membrane R protein; KEGG: lip:LI0550 type III secretion component protein SctT.


ensembl_gene_id: DvMF_2414
symbol: DvMF_2414
gene_biotype: protein_coding
description:
  TIGRFAM: type III secretion protein, HrpO family; PFAM: export protein FliQ family 3; KEGG: lip:LI0549 probable translocation protein in type III secretion.


ensembl_gene_id: DvMF_2415
symbol: DvMF_2415
gene_biotype: protein_coding
description:
  TIGRFAM: type III secretion protein, HrcV family; PFAM: type III secretion FHIPEP protein; KEGG: lip:LI0548 putative type III secretion pore protein.


ensembl_gene_id: DvMF_2419
symbol: DvMF_2419
gene_biotype: protein_coding
description:
  TIGRFAM: type III secretion effector delivery regulator, TyeA family; type III secretion regulator YopN/LcrE/InvE/MxiC; PFAM: TyeA domain protein; KEGG: lip:LI1153 putative outer protein N.


ensembl_gene_id: DvMF_2422
symbol: DvMF_2422
gene_biotype: protein_coding
description:
  TIGRFAM: type III secretion low calcium response chaperone LcrH/SycD; PFAM: Tetratricopeptide TPR_3; KEGG: lip:LI1157 regulatory protein PcrH.


ensembl_gene_id: DvMF_2426
symbol: DvMF_2426
gene_biotype: protein_coding
description:
  TIGRFAM: type III secretion outer membrane pore, YscC/HrcC family; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: lip:LI1160 putative type III secretion protein YscC.


ensembl_gene_id: DvMF_2432
symbol: DvMF_2432
gene_biotype: protein_coding
description:
  TIGRFAM: type III secretion apparatus lipoprotein, YscJ/HrcJ family; PFAM: secretory protein YscJ/FliF family protein; KEGG: lip:LI0543 LscJ.


ensembl_gene_id: DvMF_2434
symbol: DvMF_2434
gene_biotype: protein_coding
description:
  TIGRFAM: type III secretion apparatus protein, HrpE/YscL family; PFAM: flagellar assembly protein FliH; KEGG: lip:LI0541 type III secretion system protein.


ensembl_gene_id: DvMF_2435
symbol: DvMF_2435
gene_biotype: protein_coding
description:
  KEGG: lip:LI0540 type III secretion system ATPase; TIGRFAM: ATPase, FliI/YscN family; type III secretion apparatus H+-transporting two-sector ATPase; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase.


ensembl_gene_id: DvMF_2438
symbol: DvMF_2438
gene_biotype: protein_coding
description:
  TIGRFAM: type III secretion system apparatus protein YscQ/HrcQ; PFAM: surface presentation of antigens (SPOA) protein; KEGG: lip:LI1166 putative translocation protein in type III secretion.


ensembl_gene_id: DvMF_2439
symbol: DvMF_2439
gene_biotype: protein_coding
description:
  TIGRFAM: Yop virulence translocation R; PFAM: type III secretion system inner membrane P protein; KEGG: lip:LI0537 type III secretion system protein.


ensembl_gene_id: DvMF_2440
symbol: DvMF_2440
gene_biotype: protein_coding
description:
  Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: lip:LI1167 anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.


ensembl_gene_id: DvMF_2441
symbol: DvMF_2441
gene_biotype: protein_coding
description:
  Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: lip:LI1168 sigma regulatory factor-histidine kinase.


ensembl_gene_id: DvMF_2444
symbol: DvMF_2444
gene_biotype: protein_coding
description:
  PFAM: short-chain dehydrogenase/reductase SDR; KEGG: maq:Maqu_2513 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.


ensembl_gene_id: DvMF_2447
symbol: DvMF_2447
gene_biotype: protein_coding
description:
  PFAM: PDZ/DHR/GLGF domain protein; protein of unknown function DUF399; KEGG: dde:Dde_0541 PDZ/DHR/GLGF.


ensembl_gene_id: DvMF_2448
symbol: DvMF_2448
gene_biotype: protein_coding
description:
  PFAM: CopG domain protein DNA-binding domain protein; protein of unknown function UPF0150; KEGG: ccr:CC_3185 CopG family DNA-binding protein.


ensembl_gene_id: DvMF_2449
symbol: DvMF_2449
gene_biotype: protein_coding
description:
  formamidopyrimidine-DNA glycosylase; KEGG: dde:Dde_0542 DNA-(apurinic or apyrimidinic site) lyase / formamidopyrimidine-DNA glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: zinc finger Fpg domain protein; Formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding; Belongs to the FPG family.


ensembl_gene_id: DvMF_2451
symbol: murA
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.


ensembl_gene_id: DvMF_2452
symbol: DvMF_2452
gene_biotype: protein_coding
description:
  Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: dde:Dde_0544 periplasmic sensor hybrid histidine kinase.


ensembl_gene_id: DvMF_2453
symbol: murJ
gene_biotype: protein_coding
description:
  Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.


ensembl_gene_id: DvMF_2454
symbol: DvMF_2454
gene_biotype: protein_coding
description:
  Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: dde:Dde_0550 diguanylate cyclase/phosphodiesterase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein.


ensembl_gene_id: DvMF_2455
symbol: DvMF_2455
gene_biotype: protein_coding
description:
  TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: mag:amb2535 hemerythrin; FOG: CheY-like receiver.


ensembl_gene_id: DvMF_2456
symbol: DvMF_2456
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_0551 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase.


ensembl_gene_id: DvMF_2458
symbol: DvMF_2458
gene_biotype: protein_coding
description:
  PFAM: fumarate reductase respiratory complex transmembrane subunit; KEGG: dde:Dde_1258 fumarate reductase, cytochrome b subunit.


ensembl_gene_id: DvMF_2459
symbol: DvMF_2459
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_1257 fumarate reductase flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein.


ensembl_gene_id: DvMF_2460
symbol: DvMF_2460
gene_biotype: protein_coding
description:
  TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_1256 fumarate reductase iron-sulfur subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.


ensembl_gene_id: DvMF_2461
symbol: DvMF_2461
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_1255 fumarate hydratase; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region.


ensembl_gene_id: DvMF_2462
symbol: DvMF_2462
gene_biotype: protein_coding
description:
  TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: dde:Dde_1254 tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit.


ensembl_gene_id: DvMF_2465
symbol: DvMF_2465
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_0072 transcriptional regulator, LysR family.


ensembl_gene_id: DvMF_2469
symbol: DvMF_2469
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sew:SeSA_A0770 molybdopterin-containing oxidoreductase iron-sulfur subunit.


ensembl_gene_id: DvMF_2471
symbol: DvMF_2471
gene_biotype: protein_coding
description:
  PFAM: cytoplasmic chaperone TorD family protein; KEGG: stm:STM0610 putative anaerobic dehydrogenase component.


ensembl_gene_id: DvMF_2472
symbol: DvMF_2472
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_3205 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II.


ensembl_gene_id: DvMF_2473
symbol: DvMF_2473
gene_biotype: protein_coding
description:
  PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: dde:Dde_3204 cytochrome d ubiquinol oxidase, subunit I.


ensembl_gene_id: DvMF_2474
symbol: DvMF_2474
gene_biotype: protein_coding
description:
  TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: sfu:Sfum_3697 molybdenum ABC transporter, periplasmic molybdate-binding protein.


ensembl_gene_id: DvMF_2476
symbol: DvMF_2476
gene_biotype: protein_coding
description:
  PFAM: integrase family protein; TOBE domain protein; KEGG: dde:Dde_3517 molybdenum-pterin binding domain-containing protein.


ensembl_gene_id: DvMF_2478
symbol: DvMF_2478
gene_biotype: protein_coding
description:
  Molybdate ABC transporter, inner membrane subunit; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: DvMF_2479
symbol: DvMF_2479
gene_biotype: protein_coding
description:
  PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: dde:Dde_3195 rubredoxin-oxygen oxidoreductase.


ensembl_gene_id: DvMF_2480
symbol: rub
gene_biotype: protein_coding
description:
  Rubredoxin-type Fe(Cys)4 protein; Rubredoxin is a small nonheme, iron protein lacking acid- labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.


ensembl_gene_id: DvMF_2481
symbol: dfx
gene_biotype: protein_coding
description:
  Desulfoferrodoxin; Catalyzes the one-electron reduction of superoxide anion radical to hydrogen peroxide at a nonheme ferrous iron center. Plays a fundamental role in case of oxidative stress via its superoxide detoxification activity (By similarity).


ensembl_gene_id: DvMF_2482
symbol: DvMF_2482
gene_biotype: protein_coding
description:
  TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; KEGG: dde:Dde_2857 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: DvMF_2483
symbol: DvMF_2483
gene_biotype: protein_coding
description:
  KEGG: hmo:HM1_1611 sensor histidine kinase, putative; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: DvMF_2484
symbol: purL
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist in  [...]


ensembl_gene_id: DvMF_2485
symbol: DvMF_2485
gene_biotype: protein_coding
description:
  PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_0283 ABC transporter related; Belongs to the ABC transporter superfamily.


ensembl_gene_id: DvMF_2486
symbol: DvMF_2486
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lip:LI1030 phosphate ABC transporter, permease protein.


ensembl_gene_id: DvMF_2487
symbol: DvMF_2487
gene_biotype: protein_coding
description:
  PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfu:Sfum_0285 binding-protein-dependent transport systems inner membrane component.


ensembl_gene_id: DvMF_2489
symbol: DvMF_2489
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Metal-dependent hydrolase HDOD; KEGG: dde:Dde_3190 diguanylate cyclase.


ensembl_gene_id: DvMF_2490
symbol: DvMF_2490
gene_biotype: protein_coding
description:
  PFAM: Polyprenyl synthetase; KEGG: dde:Dde_3189 trans-hexaprenyltranstransferase; Belongs to the FPP/GGPP synthase family.


ensembl_gene_id: DvMF_2491
symbol: mqnB
gene_biotype: protein_coding
description:
  Purine or other phosphorylase family 1; Catalyzes the hydrolysis of futalosine (FL) to dehypoxanthine futalosine (DHFL) and hypoxanthine, a step in the biosynthesis of menaquinone (MK, vitamin K2).


ensembl_gene_id: DvMF_2494
symbol: DvMF_2494
gene_biotype: protein_coding
description:
  TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: dde:Dde_3187 UDP-glucose/GDP-mannose dehydrogenase family protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.


ensembl_gene_id: DvMF_2496
symbol: ubiE
gene_biotype: protein_coding
description:
  Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).


ensembl_gene_id: DvMF_2499
symbol: DvMF_2499
gene_biotype: protein_coding
description:
  Cytochrome c class III; Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin.


ensembl_gene_id: DvMF_2500
symbol: DvMF_2500
gene_biotype: protein_coding
description:
  TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dde:Dde_3181 precorrin-3 methyltransferase.


ensembl_gene_id: DvMF_2501
symbol: DvMF_2501
gene_biotype: protein_coding
description:
  PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: dde:Dde_3181 precorrin-3 methyltransferase.


ensembl_gene_id: DvMF_2502
symbol: hemL
gene_biotype: protein_coding
description:
  TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: dde:Dde_3180 glutamate-1-semialdehyde 2,1-aminomutase.


ensembl_gene_id: DvMF_2503
symbol: DvMF_2503
gene_biotype: protein_coding
description:
  SMART: regulatory protein AsnC/Lrp family; KEGG: dde:Dde_3179 AsnC family transcriptional regulator.


ensembl_gene_id: DvMF_2506
symbol: DvMF_2506
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_3173 selenocysteine-specific translation elongation factor SelB; TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 2; Elongation factor SelB winged helix 3.


ensembl_gene_id: DvMF_2508
symbol: pnp
gene_biotype: protein_coding
description:
  Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.


ensembl_gene_id: DvMF_2509
symbol: rpsO
gene_biotype: protein_coding
description:
  Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.


ensembl_gene_id: DvMF_2510
symbol: truB
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.


ensembl_gene_id: DvMF_2511
symbol: DvMF_2511
gene_biotype: protein_coding
description:
  PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: dde:Dde_3164 DHH family protein.


ensembl_gene_id: DvMF_2513
symbol: infB
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.


ensembl_gene_id: DvMF_2516
symbol: rimP
gene_biotype: protein_coding
description:
  Protein of unknown function DUF150; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.


ensembl_gene_id: DvMF_2517
symbol: DvMF_2517
gene_biotype: protein_coding
description:
  PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_3159 flagellar basal-body rod protein, putative; Belongs to the flagella basal body rod proteins family.


ensembl_gene_id: DvMF_2518
symbol: DvMF_2518
gene_biotype: protein_coding
description:
  TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_3158 flagellar basal body rod protein FlgG; Belongs to the flagella basal body rod proteins family.


ensembl_gene_id: DvMF_2519
symbol: DvMF_2519
gene_biotype: protein_coding
description:
  TIGRFAM: flagella basal body P-ring formation protein FlgA; PFAM: SAF domain protein; KEGG: dde:Dde_3157 FlgA family protein.


ensembl_gene_id: DvMF_2520
symbol: flgH
gene_biotype: protein_coding
description:
  Flagellar L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.


ensembl_gene_id: DvMF_2521
symbol: flgI
gene_biotype: protein_coding
description:
  Flagellar P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.


ensembl_gene_id: DvMF_2526
symbol: csrA
gene_biotype: protein_coding
description:
  Carbon storage regulator, CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.


ensembl_gene_id: DvMF_2527
symbol: fliW
gene_biotype: protein_coding
description:
  Protein of unknown function DUF180; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum.


ensembl_gene_id: DvMF_2528
symbol: DvMF_2528
gene_biotype: protein_coding
description:
  Transcriptional regulator, NifA subfamily, Fis Family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: sfu:Sfum_1010 transcriptional regulator, NifA subfamily, fis family.


ensembl_gene_id: DvMF_2529
symbol: DvMF_2529
gene_biotype: protein_coding
description:
  PFAM: MscS Mechanosensitive ion channel; KEGG: lip:LI1173 3264: small-conductance mechanosensitive channel.


ensembl_gene_id: DvMF_2533
symbol: DvMF_2533
gene_biotype: protein_coding
description:
  Contains selenocysteine; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: dde:Dde_0813 formate dehydrogenase alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.


ensembl_gene_id: DvMF_2535
symbol: DvMF_2535
gene_biotype: protein_coding
description:
  PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: azo:azo2986 putative methyltransferase.


ensembl_gene_id: DvMF_2536
symbol: DvMF_2536
gene_biotype: protein_coding
description:
  Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dde:Dde_3234 two component Fis family transcriptional regulator.


ensembl_gene_id: DvMF_2537
symbol: DvMF_2537
gene_biotype: protein_coding
description:
  KEGG: gsu:GSU0842 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: DvMF_2539
symbol: DvMF_2539
gene_biotype: protein_coding
description:
  KEGG: mac:MA1270 sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: extracellular solute-binding protein family 3; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.


ensembl_gene_id: DvMF_2541
symbol: DvMF_2541
gene_biotype: protein_coding
description:
  Multi-sensor signal transduction histidine kinase; KEGG: pca:Pcar_0053 two component sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.


ensembl_gene_id: DvMF_2542
symbol: DvMF_2542
gene_biotype: protein_coding
description:
  PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_2159 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: DvMF_2544
symbol: DvMF_2544
gene_biotype: protein_coding
description:
  PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: glo:Glov_0589 multi-sensor signal transduction histidine kinase.


ensembl_gene_id: DvMF_2545
symbol: DvMF_2545
gene_biotype: protein_coding
description:
  PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: mex:Mext_3509 metal-dependent phosphohydrolase HD sub domain.


ensembl_gene_id: DvMF_2547
symbol: DvMF_2547
gene_biotype: protein_coding
description:
  TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: dde:Dde_3719 BadM/Rrf2 family transcriptional regulator.


ensembl_gene_id: DvMF_2548
symbol: DvMF_2548
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_3718 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.


ensembl_gene_id: DvMF_2549
symbol: DvMF_2549
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; ATP-binding region ATPase domain protein; KEGG: dde:Dde_3717 response regulator receiver sensor signal transduction histidine kinase.


ensembl_gene_id: DvMF_2550
symbol: DvMF_2550
gene_biotype: protein_coding
description:
  Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_3715 multi-sensor signal transduction histidine kinase.


ensembl_gene_id: DvMF_2551
symbol: DvMF_2551
gene_biotype: protein_coding
description:
  PFAM: response regulator receiver; KEGG: dde:Dde_3714 response regulator receiver domain-containing protein.


ensembl_gene_id: DvMF_2555
symbol: DvMF_2555
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_3709 ferredoxin, 4Fe-4S, putative.


ensembl_gene_id: DvMF_2560
symbol: DvMF_2560
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: bmj:BMULJ_02621 AraC subfamily transcriptional regulator.


ensembl_gene_id: DvMF_2564
symbol: DvMF_2564
gene_biotype: protein_coding
description:
  TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-4 domain protein; PAS fold domain protein; KEGG: dde:Dde_2411 methyl-accepting chemotaxis sensory transducer.


ensembl_gene_id: DvMF_2566
symbol: DvMF_2566
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, inner membrane subunit PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.


ensembl_gene_id: DvMF_2567
symbol: DvMF_2567
gene_biotype: protein_coding
description:
  TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csa:Csal_1478 phosphate transport system permease protein 2.


ensembl_gene_id: DvMF_2568
symbol: DvMF_2568
gene_biotype: protein_coding
description:
  PFAM: filamentation induced by cAMP protein Fic; KEGG: dol:Dole_1842 filamentation induced by cAMP protein Fic.


ensembl_gene_id: DvMF_2569
symbol: DvMF_2569
gene_biotype: protein_coding
description:
  PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: dde:Dde_0483 ATPase.


ensembl_gene_id: DvMF_2572
symbol: DvMF_2572
gene_biotype: protein_coding
description:
  Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: mxa:MXAN_0172 sigma-54 dependent DNA-binding response regulator.


ensembl_gene_id: DvMF_2573
symbol: DvMF_2573
gene_biotype: protein_coding
description:
  PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: psa:PST_4054 sensory box histidine kinase.


ensembl_gene_id: DvMF_2574
symbol: DvMF_2574
gene_biotype: protein_coding
description:
  PFAM: Osmosensitive K channel His kinase sensor; UspA domain protein; KEGG: mxa:MXAN_0167 osmosensitive K+ channel His kinase sensor domain/universal stress domain protein.


ensembl_gene_id: DvMF_2575
symbol: kdpC
gene_biotype: protein_coding
description:
  Potassium-transporting ATPase, C subunit; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP-binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB/KdpC/ATP ternary complex.


ensembl_gene_id: DvMF_2576
symbol: kdpB
gene_biotype: protein_coding
description:
  K+-transporting ATPase, B subunit; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system. Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IA subfamily.


ensembl_gene_id: DvMF_2577
symbol: kdpA
gene_biotype: protein_coding
description:
  Potassium-transporting ATPase, A subunit; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane.


ensembl_gene_id: DvMF_2579
symbol: DvMF_2579
gene_biotype: protein_coding
description:
  Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: dde:Dde_3135 ArsR family transcriptional regulator.


ensembl_gene_id: DvMF_2580
symbol: ahcY
gene_biotype: protein_coding
description:
  Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.


ensembl_gene_id: DvMF_2581
symbol: DvMF_2581
gene_biotype: protein_coding
description:
  TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: rxy:Rxyl_2873 cation diffusion facilitator family transporter; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.


ensembl_gene_id: DvMF_2582
symbol: DvMF_2582
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_1178 dihydroxyacetone kinase subunit DhaK; TIGRFAM: dihydroxyacetone kinase, DhaK subunit; PFAM: Dak kinase.


ensembl_gene_id: DvMF_2583
symbol: DvMF_2583
gene_biotype: protein_coding
description:
  TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; KEGG: dde:Dde_1179 DAK2 domain-containing protein.


ensembl_gene_id: DvMF_2584
symbol: DvMF_2584
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_1180 phosphoenolpyruvate--protein phosphotransferase; TIGRFAM: phosphocarrier, HPr family; phosphoenolpyruvate-protein phosphotransferase; dihydroxyacetone kinase, phosphotransfer subunit; PFAM: phosphocarrier HPr protein; PEP-utilizing protein; PTS system fructose subfamily IIA component; PEP-utilising protein mobile region; PEP-utilising protein domain protein; Belongs to the PEP-utilizing enzyme family.


ensembl_gene_id: DvMF_2585
symbol: DvMF_2585
gene_biotype: protein_coding
description:
  PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: dde:Dde_0638 putative anti-sigma-28 factor, FlgM.


ensembl_gene_id: DvMF_2587
symbol: DvMF_2587
gene_biotype: protein_coding
description:
  Maf protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.


ensembl_gene_id: DvMF_2588
symbol: DvMF_2588
gene_biotype: protein_coding
description:
  Phosphatidylglycerophosphatase A; Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG).


ensembl_gene_id: DvMF_2591
symbol: DvMF_2591
gene_biotype: protein_coding
description:
  TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: dde:Dde_0647 BadM/Rrf2 family transcriptional regulator.


ensembl_gene_id: DvMF_2592
symbol: DvMF_2592
gene_biotype: protein_coding
description:
  Two component transcriptional regulator, Fis family; PFAM: response regulator receiver; KEGG: dde:Dde_3714 response regulator receiver domain-containing protein.


ensembl_gene_id: DvMF_2593
symbol: DvMF_2593
gene_biotype: protein_coding
description:
  PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_0648 hmc operon protein 6.


ensembl_gene_id: DvMF_2597
symbol: DvMF_2597
gene_biotype: protein_coding
description:
  PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0652 hypothetical protein.


ensembl_gene_id: DvMF_2606
symbol: mscL
gene_biotype: protein_coding
description:
  Large conductance mechanosensitive channel protein; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.


ensembl_gene_id: DvMF_2607
symbol: DvMF_2607
gene_biotype: protein_coding
description:
  PFAM: Extracellular ligand-binding receptor; KEGG: dde:Dde_0612 high-affinity branched chain amino acid ABC transporter, periplasmic branched chain amino acid-binding protein.


ensembl_gene_id: DvMF_2608
symbol: DvMF_2608
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: dde:Dde_0611 high-affinity branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.


ensembl_gene_id: DvMF_2609
symbol: DvMF_2609
gene_biotype: protein_coding
description:
  PFAM: inner-membrane translocator; KEGG: sat:SYN_00787 branched-chain amino acid transport system permease protein.


ensembl_gene_id: DvMF_2612
symbol: DvMF_2612
gene_biotype: protein_coding
description:
  PFAM: pyruvate carboxyltransferase; KEGG: met:M446_3580 homocitrate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family.


ensembl_gene_id: DvMF_2613
symbol: nifH
gene_biotype: protein_coding
description:
  Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.


ensembl_gene_id: DvMF_2615
symbol: DvMF_2615
gene_biotype: protein_coding
description:
  PFAM: nitrogen regulatory protein P-II; KEGG: pvi:Cvib_1345 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.


ensembl_gene_id: DvMF_2616
symbol: DvMF_2616
gene_biotype: protein_coding
description:
  KEGG: sfu:Sfum_1016 nitrogenase molybdenum-iron protein alpha chain; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1.


ensembl_gene_id: DvMF_2617
symbol: DvMF_2617
gene_biotype: protein_coding
description:
  Nitrogenase molybdenum-iron protein beta chain; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family.


ensembl_gene_id: DvMF_2618
symbol: DvMF_2618
gene_biotype: protein_coding
description:
  PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; Radical SAM domain protein; KEGG: cpc:Cpar_1626 nitrogenase cofactor biosynthesis protein NifB.


ensembl_gene_id: DvMF_2620
symbol: DvMF_2620
gene_biotype: protein_coding
description:
  KEGG: sfu:Sfum_1013 nitrogenase MoFe cofactor biosynthesis protein NifE; TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase component 1; Belongs to the NifD/NifK/NifE/NifN family.


ensembl_gene_id: DvMF_2621
symbol: DvMF_2621
gene_biotype: protein_coding
description:
  Nitrogenase; PFAM: oxidoreductase/nitrogenase component 1; KEGG: sfu:Sfum_1012 nitrogenase; Belongs to the NifD/NifK/NifE/NifN family.


ensembl_gene_id: DvMF_2622
symbol: DvMF_2622
gene_biotype: protein_coding
description:
  KEGG: sfu:Sfum_1011 nitrogenase cofactor biosynthesis protein NifB; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.


ensembl_gene_id: DvMF_2624
symbol: DvMF_2624
gene_biotype: protein_coding
description:
  TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; acetolactate synthase small subunit; KEGG: dde:Dde_3130 acetolactate synthase, small subunit.


ensembl_gene_id: DvMF_2626
symbol: buk
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_3128 butyrate kinase; TIGRFAM: butyrate kinase; PFAM: acetate and butyrate kinase; Belongs to the acetokinase family.


ensembl_gene_id: DvMF_2630
symbol: DvMF_2630
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_3124 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; SMART: RNA binding S1 domain protein.


ensembl_gene_id: DvMF_2634
symbol: DvMF_2634
gene_biotype: protein_coding
description:
  FAD dependent oxidoreductase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_3119 hypothetical protein.


ensembl_gene_id: DvMF_2637
symbol: DvMF_2637
gene_biotype: protein_coding
description:
  TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; extracellular solute-binding protein family 3; KEGG: mag:amb3301 response regulator.


ensembl_gene_id: DvMF_2638
symbol: DvMF_2638
gene_biotype: protein_coding
description:
  PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: bvi:Bcep1808_4142 UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.


ensembl_gene_id: DvMF_2640
symbol: DvMF_2640
gene_biotype: protein_coding
description:
  KEGG: dde:Dde_0558 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.


ensembl_gene_id: DvMF_2641
symbol: DvMF_2641
gene_biotype: protein_coding
description:
  TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: bba:Bd2196 twin-argine protein translocase component.


