# geneInfo

ensembl_gene_id: HMPREF9176_0001
symbol: EFQ57731.1
gene_biotype: protein_coding
description:
  Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.


ensembl_gene_id: HMPREF9176_0002
symbol: EFQ57724.1
gene_biotype: protein_coding
description:
  Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by glimmer; putative.


ensembl_gene_id: HMPREF9176_0005
symbol: dam
gene_biotype: protein_coding
description:
  DNA adenine methylase; Identified by match to protein family HMM PF02086; match to protein family HMM TIGR00571.


ensembl_gene_id: HMPREF9176_0009
symbol: EFQ57736.1
gene_biotype: protein_coding
description:
  E1-E2 ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494.


ensembl_gene_id: HMPREF9176_0010
symbol: EFQ57728.1
gene_biotype: protein_coding
description:
  Transposase, IS4 family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF01609.


ensembl_gene_id: HMPREF9176_0012
symbol: akr5f
gene_biotype: protein_coding
description:
  Oxidoreductase, aldo/keto reductase family protein; Identified by match to protein family HMM PF00248.


ensembl_gene_id: HMPREF9176_0014
symbol: EFQ57722.1
gene_biotype: protein_coding
description:
  Toxin-antitoxin system, toxin component, RelE family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative.


ensembl_gene_id: HMPREF9176_0019
symbol: EFQ57729.1
gene_biotype: protein_coding
description:
  Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts.


ensembl_gene_id: HMPREF9176_0020
symbol: EFQ57730.1
gene_biotype: protein_coding
description:
  Transposase, IS4 family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF01609.


ensembl_gene_id: HMPREF9176_0021
symbol: EFQ57735.1
gene_biotype: protein_coding
description:
  Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.


ensembl_gene_id: HMPREF9176_0022
symbol: EFQ57757.1
gene_biotype: protein_coding
description:
  Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative.


ensembl_gene_id: HMPREF9176_0028
symbol: raiA
gene_biotype: protein_coding
description:
  Ribosomal subunit interface protein; Identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741.


ensembl_gene_id: HMPREF9176_0030
symbol: EFQ57779.1
gene_biotype: protein_coding
description:
  Helicase C-terminal domain protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851.


ensembl_gene_id: HMPREF9176_0032
symbol: cysK
gene_biotype: protein_coding
description:
  Cysteine synthase A; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139.


ensembl_gene_id: HMPREF9176_0034
symbol: EFQ57766.1
gene_biotype: protein_coding
description:
  Cof-like hydrolase; Identified by match to protein family HMM PF00160; match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484.


ensembl_gene_id: HMPREF9176_0036
symbol: EFQ57750.1
gene_biotype: protein_coding
description:
  Formate C-acetyltransferase; Identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01774.


ensembl_gene_id: HMPREF9176_0037
symbol: EFQ57776.1
gene_biotype: protein_coding
description:
  Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281.


ensembl_gene_id: HMPREF9176_0038
symbol: EFQ57762.1
gene_biotype: protein_coding
description:
  Histidine kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730.


ensembl_gene_id: HMPREF9176_0041
symbol: prkC
gene_biotype: protein_coding
description:
  Kinase domain protein; Identified by match to protein family HMM PF00069; match to protein family HMM PF01163; match to protein family HMM PF03793; match to protein family HMM PF07714.


ensembl_gene_id: HMPREF9176_0043
symbol: sun
gene_biotype: protein_coding
description:
  Ribosomal RNA small subunit methyltransferase B; Identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563.


ensembl_gene_id: HMPREF9176_0044
symbol: fmt
gene_biotype: protein_coding
description:
  methionyl-tRNA formyltransferase; Identified by match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460.


ensembl_gene_id: HMPREF9176_0046
symbol: priA
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; match to protein family HMM TIGR00595.


ensembl_gene_id: HMPREF9176_0047
symbol: rpoZ
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, omega subunit; Identified by match to protein family HMM PF01192; match to protein family HMM TIGR00690.


ensembl_gene_id: HMPREF9176_0048
symbol: gmk
gene_biotype: protein_coding
description:
  Guanylate kinase; Identified by match to protein family HMM PF00625; match to protein family HMM TIGR03263.


ensembl_gene_id: HMPREF9176_0051
symbol: rpsR
gene_biotype: protein_coding
description:
  Ribosomal protein S18; Identified by match to protein family HMM PF01084; match to protein family HMM TIGR00165.


ensembl_gene_id: HMPREF9176_0053
symbol: rpsF
gene_biotype: protein_coding
description:
  Ribosomal protein S6; Identified by match to protein family HMM PF01250; match to protein family HMM TIGR00166.


ensembl_gene_id: HMPREF9176_0059
symbol: lagD
gene_biotype: protein_coding
description:
  ABC-type bacteriocin transporter; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01193.


ensembl_gene_id: HMPREF9176_0061
symbol: EFQ57099.1
gene_biotype: protein_coding
description:
  Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by glimmer; putative.


ensembl_gene_id: HMPREF9176_0071
symbol: EFQ57073.1
gene_biotype: protein_coding
description:
  SUF system FeS assembly protein, NifU family; Identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994.


ensembl_gene_id: HMPREF9176_0072
symbol: sufS
gene_biotype: protein_coding
description:
  Cysteine desulfurase, SufS subfamily; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979.


ensembl_gene_id: HMPREF9176_0073
symbol: sufD
gene_biotype: protein_coding
description:
  FeS assembly protein SufD; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981.


ensembl_gene_id: HMPREF9176_0074
symbol: sufC
gene_biotype: protein_coding
description:
  FeS assembly ATPase SufC; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978.


ensembl_gene_id: HMPREF9176_0083
symbol: EFQ57098.1
gene_biotype: protein_coding
description:
  ABC transporter, permease protein; Identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726.


ensembl_gene_id: HMPREF9176_0086
symbol: brnQ
gene_biotype: protein_coding
description:
  Branched-chain amino acid transport system II carrier protein; Identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796.


ensembl_gene_id: HMPREF9176_0088
symbol: ilvA
gene_biotype: protein_coding
description:
  Threonine ammonia-lyase; Identified by match to protein family HMM PF00291; match to protein family HMM PF00585; match to protein family HMM TIGR02079.


ensembl_gene_id: HMPREF9176_0091
symbol: polA
gene_biotype: protein_coding
description:
  DNA-directed DNA polymerase; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593.


ensembl_gene_id: HMPREF9176_0092
symbol: EFQ57097.1
gene_biotype: protein_coding
description:
  ABC transporter, substrate-binding protein, QAT family; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069.


ensembl_gene_id: HMPREF9176_0093
symbol: proV
gene_biotype: protein_coding
description:
  Glycine betaine/L-proline transport ATP binding subunit; Identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186.


ensembl_gene_id: HMPREF9176_0094
symbol: EFQ57079.1
gene_biotype: protein_coding
description:
  Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.


ensembl_gene_id: HMPREF9176_0104
symbol: EFQ56470.1
gene_biotype: protein_coding
description:
  Bacterial type II secretion system domain protein F; Identified by match to protein family HMM PF00482.


ensembl_gene_id: HMPREF9176_0105
symbol: EFQ56437.1
gene_biotype: protein_coding
description:
  Prepilin-type cleavage/methylation N-terminal domain protein; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; overlaps another CDS with the same product name.


ensembl_gene_id: HMPREF9176_0106
symbol: EFQ56426.1
gene_biotype: protein_coding
description:
  Prepilin-type cleavage/methylation N-terminal domain protein; Identified by match to protein family HMM TIGR02532; overlaps another CDS with the same product name.


ensembl_gene_id: HMPREF9176_0110
symbol: EFQ56429.1
gene_biotype: protein_coding
description:
  Toxin-antitoxin system, toxin component, RelE family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.


ensembl_gene_id: HMPREF9176_0113
symbol: ackA
gene_biotype: protein_coding
description:
  Acetate kinase; Identified by match to protein family HMM PF00871; match to protein family HMM TIGR00016.


ensembl_gene_id: HMPREF9176_0114
symbol: EFQ56476.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466.


ensembl_gene_id: HMPREF9176_0116
symbol: EFQ56471.1
gene_biotype: protein_coding
description:
  ABC transporter, permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.


ensembl_gene_id: HMPREF9176_0117
symbol: EFQ56472.1
gene_biotype: protein_coding
description:
  ABC transporter, substrate-binding protein, family 3; Identified by match to protein family HMM PF00497.


ensembl_gene_id: HMPREF9176_0128
symbol: EFQ56430.1
gene_biotype: protein_coding
description:
  Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; Identified by match to protein family HMM PF01832.


ensembl_gene_id: HMPREF9176_0129
symbol: hrcA
gene_biotype: protein_coding
description:
  Heat-inducible transcription repressor HrcA; Identified by match to protein family HMM PF01628; match to protein family HMM TIGR00331.


ensembl_gene_id: HMPREF9176_0131
symbol: dnaK
gene_biotype: protein_coding
description:
  Chaperone protein DnaK; Identified by match to protein family HMM PF00012; match to protein family HMM TIGR02350.


ensembl_gene_id: HMPREF9176_0133
symbol: dnaJ
gene_biotype: protein_coding
description:
  Chaperone protein DnaJ; Identified by match to protein family HMM PF00226; match to protein family HMM PF00684; match to protein family HMM PF01556; match to protein family HMM TIGR02349.


ensembl_gene_id: HMPREF9176_0134
symbol: truA
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase A; Identified by match to protein family HMM PF01416; match to protein family HMM TIGR00071.


ensembl_gene_id: HMPREF9176_0138
symbol: EFQ56467.1
gene_biotype: protein_coding
description:
  Transporter, small conductance mechanosensitive ion channel MscS family protein; Identified by match to protein family HMM PF00924.


ensembl_gene_id: HMPREF9176_0139
symbol: tig
gene_biotype: protein_coding
description:
  Trigger factor; Identified by match to protein family HMM PF00254; match to protein family HMM PF05697; match to protein family HMM PF05698; match to protein family HMM TIGR00115.


ensembl_gene_id: HMPREF9176_0141
symbol: pyrG
gene_biotype: protein_coding
description:
  CTP synthase; Identified by match to protein family HMM PF00117; match to protein family HMM PF06418; match to protein family HMM TIGR00337.


ensembl_gene_id: HMPREF9176_0144
symbol: fba
gene_biotype: protein_coding
description:
  Fructose-1,6-bisphosphate aldolase, class II; Identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167; match to protein family HMM TIGR01859.


ensembl_gene_id: HMPREF9176_0150
symbol: EFQ56448.1
gene_biotype: protein_coding
description:
  DAK2 domain fusion protein YloV; Identified by match to protein family HMM PF02734; match to protein family HMM TIGR03599.


ensembl_gene_id: HMPREF9176_0151
symbol: ilvB
gene_biotype: protein_coding
description:
  Acetolactate synthase, large subunit, biosynthetic type; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118.


ensembl_gene_id: HMPREF9176_0152
symbol: ilvN
gene_biotype: protein_coding
description:
  Acetolactate synthase, small subunit; Identified by match to protein family HMM PF01842; match to protein family HMM TIGR00119.


ensembl_gene_id: HMPREF9176_0153
symbol: ilvC
gene_biotype: protein_coding
description:
  Ketol-acid reductoisomerase; Identified by match to protein family HMM PF01450; match to protein family HMM PF07991; match to protein family HMM TIGR00465.


ensembl_gene_id: HMPREF9176_0154
symbol: leuS
gene_biotype: protein_coding
description:
  leucine--tRNA ligase; Identified by match to protein family HMM PF00133; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00396.


ensembl_gene_id: HMPREF9176_0158
symbol: rplQ
gene_biotype: protein_coding
description:
  Ribosomal protein L17; Identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059.


ensembl_gene_id: HMPREF9176_0159
symbol: rpoA
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, alpha subunit; Identified by match to protein family HMM PF01000; match to protein family HMM PF01193; match to protein family HMM PF03118; match to protein family HMM TIGR02027.


ensembl_gene_id: HMPREF9176_0160
symbol: rpsK
gene_biotype: protein_coding
description:
  30S ribosomal protein S11; Identified by match to protein family HMM PF00411; match to protein family HMM TIGR03632.


ensembl_gene_id: HMPREF9176_0161
symbol: rpsM
gene_biotype: protein_coding
description:
  30S ribosomal protein S13; Identified by match to protein family HMM PF00416; match to protein family HMM TIGR03631.


ensembl_gene_id: HMPREF9176_0162
symbol: rpmJ
gene_biotype: protein_coding
description:
  Ribosomal protein L36; Identified by match to protein family HMM PF00444; match to protein family HMM TIGR01022.


ensembl_gene_id: HMPREF9176_0163
symbol: infA
gene_biotype: protein_coding
description:
  Translation initiation factor IF-1; Identified by match to protein family HMM PF00575; match to protein family HMM PF01176; match to protein family HMM TIGR00008.


ensembl_gene_id: HMPREF9176_0164
symbol: adk
gene_biotype: protein_coding
description:
  Adenylate kinase; Identified by match to protein family HMM PF00406; match to protein family HMM TIGR01351.


ensembl_gene_id: HMPREF9176_0165
symbol: secY
gene_biotype: protein_coding
description:
  Preprotein translocase, SecY subunit; Identified by match to protein family HMM PF00344; match to protein family HMM TIGR00967.


ensembl_gene_id: HMPREF9176_0166
symbol: rplO
gene_biotype: protein_coding
description:
  Ribosomal protein L15; Identified by match to protein family HMM PF00256; match to protein family HMM PF01305; match to protein family HMM TIGR01071.


ensembl_gene_id: HMPREF9176_0167
symbol: rpmD
gene_biotype: protein_coding
description:
  Ribosomal protein L30; Identified by match to protein family HMM PF00327; match to protein family HMM TIGR01308.


ensembl_gene_id: HMPREF9176_0168
symbol: rpsE
gene_biotype: protein_coding
description:
  Ribosomal protein S5; Identified by match to protein family HMM PF00333; match to protein family HMM PF03719; match to protein family HMM TIGR01021.


ensembl_gene_id: HMPREF9176_0169
symbol: rplR
gene_biotype: protein_coding
description:
  Ribosomal protein L18; Identified by match to protein family HMM PF00861; match to protein family HMM TIGR00060.


ensembl_gene_id: HMPREF9176_0170
symbol: rplF
gene_biotype: protein_coding
description:
  Ribosomal protein L6; Identified by match to protein family HMM PF00347; match to protein family HMM TIGR03654.


ensembl_gene_id: HMPREF9176_0172
symbol: rplE
gene_biotype: protein_coding
description:
  Ribosomal protein L5; Identified by match to protein family HMM PF00281; match to protein family HMM PF00673.


ensembl_gene_id: HMPREF9176_0173
symbol: rplX
gene_biotype: protein_coding
description:
  Ribosomal protein L24; Identified by match to protein family HMM PF00467; match to protein family HMM TIGR01079.


ensembl_gene_id: HMPREF9176_0174
symbol: rplN
gene_biotype: protein_coding
description:
  Ribosomal protein L14; Identified by match to protein family HMM PF00238; match to protein family HMM TIGR01067.


ensembl_gene_id: HMPREF9176_0175
symbol: rpsQ
gene_biotype: protein_coding
description:
  30S ribosomal protein S17; Identified by match to protein family HMM PF00366; match to protein family HMM TIGR03635.


ensembl_gene_id: HMPREF9176_0176
symbol: rpmC
gene_biotype: protein_coding
description:
  Ribosomal protein L29; Identified by match to protein family HMM PF00831; match to protein family HMM TIGR00012.


ensembl_gene_id: HMPREF9176_0177
symbol: rplP
gene_biotype: protein_coding
description:
  Ribosomal protein L16; Identified by match to protein family HMM PF00252; match to protein family HMM TIGR01164.


ensembl_gene_id: HMPREF9176_0178
symbol: rpsC
gene_biotype: protein_coding
description:
  Ribosomal protein S3; Identified by match to protein family HMM PF00189; match to protein family HMM PF00417; match to protein family HMM PF07650; match to protein family HMM TIGR01009.


ensembl_gene_id: HMPREF9176_0179
symbol: rplV
gene_biotype: protein_coding
description:
  Ribosomal protein L22; Identified by match to protein family HMM PF00237; match to protein family HMM TIGR01044.


ensembl_gene_id: HMPREF9176_0180
symbol: rpsS
gene_biotype: protein_coding
description:
  Ribosomal protein S19; Identified by match to protein family HMM PF00203; match to protein family HMM TIGR01050.


ensembl_gene_id: HMPREF9176_0181
symbol: rplB
gene_biotype: protein_coding
description:
  Ribosomal protein L2; Identified by match to protein family HMM PF00181; match to protein family HMM PF03947; match to protein family HMM TIGR01171.


ensembl_gene_id: HMPREF9176_0183
symbol: rplD
gene_biotype: protein_coding
description:
  50S ribosomal protein L4; Identified by match to protein family HMM PF00573; match to protein family HMM TIGR03953.


ensembl_gene_id: HMPREF9176_0184
symbol: rplC
gene_biotype: protein_coding
description:
  50S ribosomal protein L3; Identified by match to protein family HMM PF00297; match to protein family HMM TIGR03625.


ensembl_gene_id: HMPREF9176_0186
symbol: budC
gene_biotype: protein_coding
description:
  Acetoin reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659; match to protein family HMM TIGR02415.


ensembl_gene_id: HMPREF9176_0188
symbol: thrC
gene_biotype: protein_coding
description:
  Threonine synthase; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR00260.


ensembl_gene_id: HMPREF9176_0192
symbol: EFQ56173.1
gene_biotype: protein_coding
description:
  Acyltransferase; Identified by match to protein family HMM PF01757; match to protein family HMM PF02706.


ensembl_gene_id: HMPREF9176_0194
symbol: EFQ56163.1
gene_biotype: protein_coding
description:
  Low molecular weight phosphotyrosine protein phosphatase; Identified by match to protein family HMM PF01451.


ensembl_gene_id: HMPREF9176_0195
symbol: ruvB
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase RuvB; Identified by match to protein family HMM PF00004; match to protein family HMM PF05491; match to protein family HMM PF05496; match to protein family HMM PF07728; match to protein family HMM TIGR00635.


ensembl_gene_id: HMPREF9176_0196
symbol: rplM
gene_biotype: protein_coding
description:
  Ribosomal protein L13; Identified by match to protein family HMM PF00572; match to protein family HMM TIGR01066.


ensembl_gene_id: HMPREF9176_0216
symbol: EFQ57125.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047; match to protein family HMM PF01325.


ensembl_gene_id: HMPREF9176_0220
symbol: tyrS
gene_biotype: protein_coding
description:
  tyrosine--tRNA ligase; Identified by match to protein family HMM PF00579; match to protein family HMM PF01479; match to protein family HMM TIGR00234.


ensembl_gene_id: HMPREF9176_0221
symbol: EFQ57122.1
gene_biotype: protein_coding
description:
  Transglycosylase; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912.


ensembl_gene_id: HMPREF9176_0224
symbol: rpoB
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta subunit; Identified by match to protein family HMM PF00562; match to protein family HMM PF04560; match to protein family HMM PF04561; match to protein family HMM PF04563; match to protein family HMM PF04565; match to protein family HMM TIGR02013.


ensembl_gene_id: HMPREF9176_0225
symbol: rpoC
gene_biotype: protein_coding
description:
  DNA-directed RNA polymerase, beta' subunit; Identified by match to protein family HMM PF00623; match to protein family HMM PF04983; match to protein family HMM PF04997; match to protein family HMM PF04998; match to protein family HMM PF05000; match to protein family HMM TIGR02386.


ensembl_gene_id: HMPREF9176_0226
symbol: EFQ57112.1
gene_biotype: protein_coding
description:
  ABC transporter, substrate-binding protein, family 5; Identified by match to protein family HMM PF00496.


ensembl_gene_id: HMPREF9176_0229
symbol: oppD
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727.


ensembl_gene_id: HMPREF9176_0230
symbol: oppF
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352.


ensembl_gene_id: HMPREF9176_0231
symbol: EFQ57109.1
gene_biotype: protein_coding
description:
  Drug resistance MFS transporter, drug:H+ antiporter-2 family; Identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711.


ensembl_gene_id: HMPREF9176_0248
symbol: rumA
gene_biotype: protein_coding
description:
  23S rRNA (uracil-5-)-methyltransferase RumA; Identified by match to protein family HMM PF01938; match to protein family HMM PF05958; match to protein family HMM TIGR00479.


ensembl_gene_id: HMPREF9176_0251
symbol: EFQ58248.1
gene_biotype: protein_coding
description:
  Gram-positive signal peptide protein, YSIRK family; Identified by match to protein family HMM PF04650; match to protein family HMM PF08460; match to protein family HMM PF08481; match to protein family HMM TIGR01168.


ensembl_gene_id: HMPREF9176_0255
symbol: ppaC
gene_biotype: protein_coding
description:
  DHHA2 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02833.


ensembl_gene_id: HMPREF9176_0264
symbol: EFQ56477.1
gene_biotype: protein_coding
description:
  Iron dependent repressor DNA binding domain protein; Identified by match to protein family HMM PF01022; match to protein family HMM PF01047; match to protein family HMM PF01325; match to protein family HMM PF02742; match to protein family HMM PF04023.


ensembl_gene_id: HMPREF9176_0265
symbol: EFQ56492.1
gene_biotype: protein_coding
description:
  D12 class N6 adenine-specific DNA methyltransferase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02086.


ensembl_gene_id: HMPREF9176_0276
symbol: gltX
gene_biotype: protein_coding
description:
  glutamate--tRNA ligase; Identified by match to protein family HMM PF00749; match to protein family HMM TIGR00464.


ensembl_gene_id: HMPREF9176_0277
symbol: pnuC
gene_biotype: protein_coding
description:
  Nicotinamide mononucleotide transporter PnuC; Identified by match to protein family HMM PF04973; match to protein family HMM TIGR01528.


ensembl_gene_id: HMPREF9176_0279
symbol: EFQ57000.1
gene_biotype: protein_coding
description:
  LytTr DNA-binding domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.


ensembl_gene_id: HMPREF9176_0281
symbol: argG
gene_biotype: protein_coding
description:
  Argininosuccinate synthase; Identified by match to protein family HMM PF00764; match to protein family HMM TIGR00032.


ensembl_gene_id: HMPREF9176_0283
symbol: argH
gene_biotype: protein_coding
description:
  Argininosuccinate lyase; Identified by match to protein family HMM PF00206; match to protein family HMM TIGR00838.


ensembl_gene_id: HMPREF9176_0284
symbol: EFQ57015.1
gene_biotype: protein_coding
description:
  Bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase protein; Identified by match to protein family HMM PF00149; match to protein family HMM PF02872.


ensembl_gene_id: HMPREF9176_0287
symbol: EFQ56974.1
gene_biotype: protein_coding
description:
  Membrane protein insertase, YidC/Oxa1 family; Identified by match to protein family HMM PF02096; match to protein family HMM TIGR03592.


ensembl_gene_id: HMPREF9176_0298
symbol: rpmH
gene_biotype: protein_coding
description:
  Ribosomal protein L34; Identified by match to protein family HMM PF00468; match to protein family HMM TIGR01030.


ensembl_gene_id: HMPREF9176_0299
symbol: dltA
gene_biotype: protein_coding
description:
  D-alanine--poly(phosphoribitol) ligase, subunit 1; Identified by match to protein family HMM PF00501; match to protein family HMM TIGR01733; match to protein family HMM TIGR01734.


ensembl_gene_id: HMPREF9176_0301
symbol: dltC
gene_biotype: protein_coding
description:
  D-alanine--poly(phosphoribitol) ligase, subunit 2; Identified by match to protein family HMM TIGR01688.


ensembl_gene_id: HMPREF9176_0302
symbol: EFQ56972.1
gene_biotype: protein_coding
description:
  DltD C-terminal domain protein; Identified by match to protein family HMM PF04914; match to protein family HMM PF04915; match to protein family HMM PF04918.


ensembl_gene_id: HMPREF9176_0304
symbol: EFQ57026.1
gene_biotype: protein_coding
description:
  Hydrolase, TatD family; Identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010.


ensembl_gene_id: HMPREF9176_0306
symbol: rnmV
gene_biotype: protein_coding
description:
  Ribonuclease M5; Identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334.


ensembl_gene_id: HMPREF9176_0312
symbol: EFQ57032.1
gene_biotype: protein_coding
description:
  Glutathione S-transferase, N-terminal domain protein; Identified by match to protein family HMM PF02798.


ensembl_gene_id: HMPREF9176_0315
symbol: ksgA
gene_biotype: protein_coding
description:
  Dimethyladenosine transferase; Identified by match to protein family HMM PF00398; match to protein family HMM TIGR00755.


ensembl_gene_id: HMPREF9176_0319
symbol: rsgA
gene_biotype: protein_coding
description:
  Ribosome small subunit-dependent GTPase A; Identified by match to protein family HMM PF03193; match to protein family HMM TIGR00157.


ensembl_gene_id: HMPREF9176_0320
symbol: rpe
gene_biotype: protein_coding
description:
  Ribulose-phosphate 3-epimerase; Identified by match to protein family HMM PF00215; match to protein family HMM PF00834; match to protein family HMM TIGR01163.


ensembl_gene_id: HMPREF9176_0321
symbol: EFQ57014.1
gene_biotype: protein_coding
description:
  Thiamine diphosphokinase; Identified by match to protein family HMM PF04263; match to protein family HMM PF04265; match to protein family HMM TIGR01378.


ensembl_gene_id: HMPREF9176_0323
symbol: EFQ56964.1
gene_biotype: protein_coding
description:
  HD domain protein; Identified by match to protein family HMM PF01336; match to protein family HMM PF01966.


ensembl_gene_id: HMPREF9176_0324
symbol: purR
gene_biotype: protein_coding
description:
  Pur operon repressor PurR; Identified by match to protein family HMM PF00156; match to protein family HMM PF09182; match to protein family HMM TIGR01743.


ensembl_gene_id: HMPREF9176_0325
symbol: rpsL
gene_biotype: protein_coding
description:
  Ribosomal protein S12; Identified by match to protein family HMM PF00164; match to protein family HMM TIGR00981.


ensembl_gene_id: HMPREF9176_0326
symbol: rpsG
gene_biotype: protein_coding
description:
  Ribosomal protein S7; Identified by match to protein family HMM PF00177; match to protein family HMM TIGR01029.


ensembl_gene_id: HMPREF9176_0327
symbol: fusA
gene_biotype: protein_coding
description:
  Translation elongation factor G; Identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF03764; match to protein family HMM TIGR00231; match to protein family HMM TIGR00484.


ensembl_gene_id: HMPREF9176_0328
symbol: gap
gene_biotype: protein_coding
description:
  Glyceraldehyde-3-phosphate dehydrogenase, type I; Identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534.


ensembl_gene_id: HMPREF9176_0330
symbol: EFQ57037.1
gene_biotype: protein_coding
description:
  NAD dependent epimerase/dehydratase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF05368; match to protein family HMM PF07993.


ensembl_gene_id: HMPREF9176_0334
symbol: glnA
gene_biotype: protein_coding
description:
  Glutamine synthetase, type I; Identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653.


ensembl_gene_id: HMPREF9176_0335
symbol: EFQ57024.1
gene_biotype: protein_coding
description:
  CHAP domain protein; Identified by match to protein family HMM PF01476; match to protein family HMM PF05257.


ensembl_gene_id: HMPREF9176_0336
symbol: EFQ57010.1
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649; 3.1.-.-.


ensembl_gene_id: HMPREF9176_0338
symbol: yeaZ
gene_biotype: protein_coding
description:
  Universal bacterial protein YeaZ; Identified by match to protein family HMM PF00814; match to protein family HMM TIGR03725.


ensembl_gene_id: HMPREF9176_0339
symbol: rimI
gene_biotype: protein_coding
description:
  Ribosomal-protein-alanine acetyltransferase; Identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575.


ensembl_gene_id: HMPREF9176_0340
symbol: EFQ56983.1
gene_biotype: protein_coding
description:
  Putative glycoprotease GCP; Identified by match to protein family HMM PF00814; match to protein family HMM TIGR00329; match to protein family HMM TIGR03723.


ensembl_gene_id: HMPREF9176_0342
symbol: EFQ57069.1
gene_biotype: protein_coding
description:
  Branched-chain amino acid transport protein (AzlD); Identified by match to protein family HMM PF05437.


ensembl_gene_id: HMPREF9176_0343
symbol: nth
gene_biotype: protein_coding
description:
  Endonuclease III; Identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083.


ensembl_gene_id: HMPREF9176_0344
symbol: ltaE
gene_biotype: protein_coding
description:
  Low specificity L-threonine aldolase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.


ensembl_gene_id: HMPREF9176_0345
symbol: EFQ57017.1
gene_biotype: protein_coding
description:
  Beta-eliminating lyase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01212.


ensembl_gene_id: HMPREF9176_0347
symbol: EFQ56977.1
gene_biotype: protein_coding
description:
  Flavoprotein family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03486; match to protein family HMM TIGR00275.


ensembl_gene_id: HMPREF9176_0354
symbol: EFQ57067.1
gene_biotype: protein_coding
description:
  DNA-binding protein, YbaB/EbfC family; Identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103.


ensembl_gene_id: HMPREF9176_0355
symbol: EFQ56995.1
gene_biotype: protein_coding
description:
  Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589.


ensembl_gene_id: HMPREF9176_0378
symbol: EFQ57061.1
gene_biotype: protein_coding
description:
  Putative toxin-antitoxin system, toxin component; Identified by match to protein family HMM PF06114.


ensembl_gene_id: HMPREF9176_0380
symbol: pepC
gene_biotype: protein_coding
description:
  Peptidase C1-like family; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF03051.


ensembl_gene_id: HMPREF9176_0381
symbol: pbpA
gene_biotype: protein_coding
description:
  Penicillin-binding protein, transpeptidase domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00905; match to protein family HMM PF00912.


ensembl_gene_id: HMPREF9176_0382
symbol: EFQ56381.1
gene_biotype: protein_coding
description:
  Transglycosylase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00912.


ensembl_gene_id: HMPREF9176_0383
symbol: recU
gene_biotype: protein_coding
description:
  Recombination protein U; Identified by match to protein family HMM PF03838; match to protein family HMM TIGR00648.


ensembl_gene_id: HMPREF9176_0385
symbol: EFQ56334.1
gene_biotype: protein_coding
description:
  DivIVA domain protein; Identified by match to protein family HMM PF05103; match to protein family HMM TIGR03544.


ensembl_gene_id: HMPREF9176_0391
symbol: EFQ56359.1
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF00013; match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR03319.


ensembl_gene_id: HMPREF9176_0392
symbol: EFQ56246.1
gene_biotype: protein_coding
description:
  Dehydrogenase, FMN-dependent; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01070.


ensembl_gene_id: HMPREF9176_0393
symbol: EFQ56370.1
gene_biotype: protein_coding
description:
  Dehydrogenase, FMN-dependent; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF01070.


ensembl_gene_id: HMPREF9176_0394
symbol: tkt
gene_biotype: protein_coding
description:
  Transketolase; Identified by match to protein family HMM PF00456; match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00232.


ensembl_gene_id: HMPREF9176_0399
symbol: proB
gene_biotype: protein_coding
description:
  Glutamate 5-kinase; Identified by match to protein family HMM PF00696; match to protein family HMM TIGR01027.


ensembl_gene_id: HMPREF9176_0400
symbol: proA
gene_biotype: protein_coding
description:
  Glutamate-5-semialdehyde dehydrogenase; Identified by match to protein family HMM PF00171; match to protein family HMM TIGR00407.


ensembl_gene_id: HMPREF9176_0401
symbol: mraW
gene_biotype: protein_coding
description:
  S-adenosyl-methyltransferase MraW; Identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006.


ensembl_gene_id: HMPREF9176_0402
symbol: ftsL
gene_biotype: protein_coding
description:
  Cell division protein FtsL; Identified by match to protein family HMM PF04977; match to protein family HMM TIGR02209.


ensembl_gene_id: HMPREF9176_0403
symbol: pbpX
gene_biotype: protein_coding
description:
  Penicillin-binding protein, transpeptidase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793.


ensembl_gene_id: HMPREF9176_0404
symbol: mraY
gene_biotype: protein_coding
description:
  phospho-N-acetylmuramoyl-pentapeptide- transferase; Identified by match to protein family HMM PF00953; match to protein family HMM TIGR00445.


ensembl_gene_id: HMPREF9176_0405
symbol: cshB
gene_biotype: protein_coding
description:
  DEAD/DEAH box helicase; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271.


ensembl_gene_id: HMPREF9176_0411
symbol: trxB
gene_biotype: protein_coding
description:
  Thioredoxin-disulfide reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292.


ensembl_gene_id: HMPREF9176_0413
symbol: pncB
gene_biotype: protein_coding
description:
  Nicotinate phosphoribosyltransferase; Identified by match to protein family HMM PF04095; match to protein family HMM TIGR01513.


ensembl_gene_id: HMPREF9176_0414
symbol: nadE
gene_biotype: protein_coding
description:
  NAD+ synthase; Identified by match to protein family HMM PF02540; match to protein family HMM TIGR00552.


ensembl_gene_id: HMPREF9176_0415
symbol: EFQ56416.1
gene_biotype: protein_coding
description:
  DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF00717; match to protein family HMM PF01381.


ensembl_gene_id: HMPREF9176_0417
symbol: pepX
gene_biotype: protein_coding
description:
  X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain protein; Identified by match to protein family HMM PF02129; match to protein family HMM PF08530; match to protein family HMM PF09168.


ensembl_gene_id: HMPREF9176_0423
symbol: pflB
gene_biotype: protein_coding
description:
  Formate C-acetyltransferase; Identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255.


ensembl_gene_id: HMPREF9176_0431
symbol: lepB
gene_biotype: protein_coding
description:
  Signal peptidase I; Identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227.


ensembl_gene_id: HMPREF9176_0432
symbol: rnhC
gene_biotype: protein_coding
description:
  Ribonuclease HIII; Identified by match to protein family HMM PF01351; match to protein family HMM TIGR00716.


ensembl_gene_id: HMPREF9176_0435
symbol: EFQ56415.1
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF00488; match to protein family HMM PF01713; match to protein family HMM TIGR01069.


ensembl_gene_id: HMPREF9176_0436
symbol: EFQ56268.1
gene_biotype: protein_coding
description:
  acyl-CoA thioester hydrolase, YbgC/YbaW family; Identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051.


ensembl_gene_id: HMPREF9176_0437
symbol: EFQ56315.1
gene_biotype: protein_coding
description:
  Cof-like hydrolase; Identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484.


ensembl_gene_id: HMPREF9176_0442
symbol: nagA
gene_biotype: protein_coding
description:
  N-acetylglucosamine-6-phosphate deacetylase; Identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221.


ensembl_gene_id: HMPREF9176_0445
symbol: glyQ
gene_biotype: protein_coding
description:
  glycine--tRNA ligase, alpha subunit; Identified by match to protein family HMM PF02091; match to protein family HMM TIGR00388.


ensembl_gene_id: HMPREF9176_0446
symbol: glyS
gene_biotype: protein_coding
description:
  glycine--tRNA ligase, beta subunit; Identified by match to protein family HMM PF02092; match to protein family HMM PF05746; match to protein family HMM TIGR00211.


ensembl_gene_id: HMPREF9176_0449
symbol: EFQ56368.1
gene_biotype: protein_coding
description:
  Ribulose-phosphate 3 epimerase family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00834.


ensembl_gene_id: HMPREF9176_0451
symbol: uvrA
gene_biotype: protein_coding
description:
  Excinuclease ABC, A subunit; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR00630.


ensembl_gene_id: HMPREF9176_0458
symbol: efp
gene_biotype: protein_coding
description:
  Translation elongation factor P; Identified by match to protein family HMM PF01132; match to protein family HMM PF08207; match to protein family HMM PF09285; match to protein family HMM TIGR00038.


ensembl_gene_id: HMPREF9176_0460
symbol: nusB
gene_biotype: protein_coding
description:
  Transcription antitermination factor NusB; Identified by match to protein family HMM PF01029; match to protein family HMM TIGR01951.


ensembl_gene_id: HMPREF9176_0461
symbol: EFQ56207.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, LacI family; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532.


ensembl_gene_id: HMPREF9176_0462
symbol: scrB
gene_biotype: protein_coding
description:
  Sucrose-6-phosphate hydrolase; Identified by match to protein family HMM PF00251; match to protein family HMM PF08244; match to protein family HMM TIGR01322.


ensembl_gene_id: HMPREF9176_0463
symbol: EFQ56389.1
gene_biotype: protein_coding
description:
  PTS system sucrose-specific IIBC component; Identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR01996.


ensembl_gene_id: HMPREF9176_0465
symbol: manA
gene_biotype: protein_coding
description:
  Mannose-6-phosphate isomerase, class I; Identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218.


ensembl_gene_id: HMPREF9176_0466
symbol: secA
gene_biotype: protein_coding
description:
  Preprotein translocase, SecA subunit; Identified by match to protein family HMM PF00271; match to protein family HMM PF01043; match to protein family HMM PF02810; match to protein family HMM PF07516; match to protein family HMM PF07517; match to protein family HMM TIGR00963.


ensembl_gene_id: HMPREF9176_0467
symbol: EFQ56290.1
gene_biotype: protein_coding
description:
  3-deoxy-7-phosphoheptulonate synthase; Identified by match to protein family HMM PF00793; match to protein family HMM TIGR00034.


ensembl_gene_id: HMPREF9176_0469
symbol: acpS
gene_biotype: protein_coding
description:
  Holo-[acyl-carrier-protein] synthase; Identified by match to protein family HMM PF01648; match to protein family HMM TIGR00516; match to protein family HMM TIGR00556.


ensembl_gene_id: HMPREF9176_0470
symbol: alr
gene_biotype: protein_coding
description:
  Alanine racemase; Identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492.


ensembl_gene_id: HMPREF9176_0472
symbol: recG
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase RecG; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00643.


ensembl_gene_id: HMPREF9176_0473
symbol: EFQ56222.1
gene_biotype: protein_coding
description:
  Alkylhydroperoxidase AhpD family core domain protein; Identified by match to protein family HMM PF02627.


ensembl_gene_id: HMPREF9176_0480
symbol: codY
gene_biotype: protein_coding
description:
  GTP-sensing transcriptional pleiotropic repressor CodY; Identified by match to protein family HMM PF06018; match to protein family HMM PF08222; match to protein family HMM TIGR02787.


ensembl_gene_id: HMPREF9176_0486
symbol: gatC
gene_biotype: protein_coding
description:
  aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit; Identified by match to protein family HMM PF02686; match to protein family HMM TIGR00135.


ensembl_gene_id: HMPREF9176_0487
symbol: gatA
gene_biotype: protein_coding
description:
  aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit; Identified by match to protein family HMM PF01425; match to protein family HMM TIGR00132.


ensembl_gene_id: HMPREF9176_0488
symbol: gatB
gene_biotype: protein_coding
description:
  aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit; Identified by match to protein family HMM PF01162; match to protein family HMM PF02637; match to protein family HMM PF02934; match to protein family HMM TIGR00133.


ensembl_gene_id: HMPREF9176_0492
symbol: EFQ56269.1
gene_biotype: protein_coding
description:
  Putative 3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659.


ensembl_gene_id: HMPREF9176_0497
symbol: yqeG
gene_biotype: protein_coding
description:
  HAD phosphatase, family IIIA; Identified by match to protein family HMM PF09419; match to protein family HMM TIGR01662; match to protein family HMM TIGR01668.


ensembl_gene_id: HMPREF9176_0498
symbol: yqeH
gene_biotype: protein_coding
description:
  Ribosome biogenesis GTPase YqeH; Identified by match to protein family HMM PF01926; match to protein family HMM TIGR03597.


ensembl_gene_id: HMPREF9176_0499
symbol: EFQ56224.1
gene_biotype: protein_coding
description:
  6-O-methylguanine DNA methyltransferase, DNA binding domain protein; Identified by match to protein family HMM PF01035.


ensembl_gene_id: HMPREF9176_0500
symbol: EFQ56223.1
gene_biotype: protein_coding
description:
  RNA-binding protein, YhbY family; Identified by match to protein family HMM PF01985; match to protein family HMM TIGR00253.


ensembl_gene_id: HMPREF9176_0501
symbol: nadD
gene_biotype: protein_coding
description:
  Nicotinate-nucleotide adenylyltransferase; Identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR00482.


ensembl_gene_id: HMPREF9176_0502
symbol: EFQ56354.1
gene_biotype: protein_coding
description:
  Hydrolase, HD family; Identified by match to protein family HMM PF01966; match to protein family HMM TIGR00488.


ensembl_gene_id: HMPREF9176_0505
symbol: EFQ56387.1
gene_biotype: protein_coding
description:
  Methyltransferase domain protein; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242.


ensembl_gene_id: HMPREF9176_0511
symbol: EFQ56263.1
gene_biotype: protein_coding
description:
  ATPase family associated with various cellular activities (AAA); Identified by match to protein family HMM PF00004; match to protein family HMM PF07724; match to protein family HMM PF07728.


ensembl_gene_id: HMPREF9176_0515
symbol: EFQ56358.1
gene_biotype: protein_coding
description:
  Dihydroxyacetone kinase, phosphotransfer subunit; Identified by match to protein family HMM PF03610; match to protein family HMM TIGR02364.


ensembl_gene_id: HMPREF9176_0516
symbol: dhaL
gene_biotype: protein_coding
description:
  Dihydroxyacetone kinase, L subunit; Identified by match to protein family HMM PF02734; match to protein family HMM TIGR02365.


ensembl_gene_id: HMPREF9176_0517
symbol: dhaK
gene_biotype: protein_coding
description:
  Dihydroxyacetone kinase, DhaK subunit; Identified by match to protein family HMM PF02733; match to protein family HMM TIGR02363.


ensembl_gene_id: HMPREF9176_0518
symbol: EFQ56313.1
gene_biotype: protein_coding
description:
  DNA-binding regulatory protein, YebC/PmpR family; Identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033.


ensembl_gene_id: HMPREF9176_0522
symbol: EFQ56211.1
gene_biotype: protein_coding
description:
  CBS domain protein; Identified by match to protein family HMM PF00571; match to protein family HMM PF01842.


ensembl_gene_id: HMPREF9176_0523
symbol: tmk
gene_biotype: protein_coding
description:
  dTMP kinase; Identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041.


ensembl_gene_id: HMPREF9176_0527
symbol: EFQ56348.1
gene_biotype: protein_coding
description:
  Putative S-adenosylmethionine-dependent methyltransferase, YraL family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00590.


ensembl_gene_id: HMPREF9176_0530
symbol: amt
gene_biotype: protein_coding
description:
  Ammonium transporter; Identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836.


ensembl_gene_id: HMPREF9176_0532
symbol: acnA
gene_biotype: protein_coding
description:
  Aconitate hydratase 1; Identified by match to protein family HMM PF00330; match to protein family HMM PF00694; match to protein family HMM TIGR01341.


ensembl_gene_id: HMPREF9176_0533
symbol: citZ
gene_biotype: protein_coding
description:
  2-methylcitrate synthase/citrate synthase II; Identified by match to protein family HMM PF00285; match to protein family HMM TIGR01800.


ensembl_gene_id: HMPREF9176_0534
symbol: icd
gene_biotype: protein_coding
description:
  Dehydrogenase, isocitrate/isopropylmalate family; Identified by match to protein family HMM PF00180.


ensembl_gene_id: HMPREF9176_0535
symbol: serC
gene_biotype: protein_coding
description:
  Phosphoserine transaminase; Identified by match to protein family HMM PF00266; match to protein family HMM TIGR01364.


ensembl_gene_id: HMPREF9176_0537
symbol: pdxB
gene_biotype: protein_coding
description:
  4-phosphoerythronate dehydrogenase; Identified by match to protein family HMM PF00389; match to protein family HMM PF01842; match to protein family HMM PF02826; match to protein family HMM PF03446.


ensembl_gene_id: HMPREF9176_0539
symbol: ogt
gene_biotype: protein_coding
description:
  6-O-methylguanine DNA methyltransferase, DNA binding domain protein; Identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589.


ensembl_gene_id: HMPREF9176_0540
symbol: EFQ56257.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, Spx/MgsR family; Identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617.


ensembl_gene_id: HMPREF9176_0541
symbol: EFQ56357.1
gene_biotype: protein_coding
description:
  Transcriptional activator, Rgg/GadR/MutR family domain protein; Identified by match to protein family HMM TIGR01716.


ensembl_gene_id: HMPREF9176_0546
symbol: xth
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease III; Identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633.


ensembl_gene_id: HMPREF9176_0549
symbol: rplK
gene_biotype: protein_coding
description:
  Ribosomal protein L11; Identified by match to protein family HMM PF00298; match to protein family HMM PF03946; match to protein family HMM TIGR01632.


ensembl_gene_id: HMPREF9176_0550
symbol: rplA
gene_biotype: protein_coding
description:
  Ribosomal protein L1; Identified by match to protein family HMM PF00687; match to protein family HMM TIGR01169.


ensembl_gene_id: HMPREF9176_0552
symbol: pyrH
gene_biotype: protein_coding
description:
  UMP kinase; Identified by match to protein family HMM PF00696; match to protein family HMM TIGR02075.


ensembl_gene_id: HMPREF9176_0553
symbol: frr
gene_biotype: protein_coding
description:
  Ribosome recycling factor; Identified by match to protein family HMM PF01765; match to protein family HMM TIGR00496.


ensembl_gene_id: HMPREF9176_0556
symbol: EFQ56248.1
gene_biotype: protein_coding
description:
  NLPA lipoprotein; Identified by match to protein family HMM PF01547; match to protein family HMM PF03180.


ensembl_gene_id: HMPREF9176_0558
symbol: EFQ56212.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF09383.


ensembl_gene_id: HMPREF9176_0560
symbol: EFQ56329.1
gene_biotype: protein_coding
description:
  Putative bacteriocin export ABC transporter, lactococcin 972 group; Identified by match to protein family HMM PF00005.


ensembl_gene_id: HMPREF9176_0562
symbol: EFQ56419.1
gene_biotype: protein_coding
description:
  Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.


ensembl_gene_id: HMPREF9176_0563
symbol: EFQ56267.1
gene_biotype: protein_coding
description:
  ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00512; match to protein family HMM PF02518.


ensembl_gene_id: HMPREF9176_0564
symbol: EFQ56324.1
gene_biotype: protein_coding
description:
  Putative 3-hydroxybutyrate dehydrogenase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.


ensembl_gene_id: HMPREF9176_0566
symbol: EFQ56349.1
gene_biotype: protein_coding
description:
  Transposase, IS4 family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01609.


ensembl_gene_id: HMPREF9176_0569
symbol: lysS
gene_biotype: protein_coding
description:
  lysine--tRNA ligase; Identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499.


ensembl_gene_id: HMPREF9176_0574
symbol: EFQ56201.1
gene_biotype: protein_coding
description:
  HAD hydrolase, family IA, variant 1; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549.


ensembl_gene_id: HMPREF9176_0575
symbol: EFQ56320.1
gene_biotype: protein_coding
description:
  DNA primase small subunit; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01896; match to protein family HMM PF04851.


ensembl_gene_id: HMPREF9176_0576
symbol: EFQ56228.1
gene_biotype: protein_coding
description:
  Helicase C-terminal domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00271.


ensembl_gene_id: HMPREF9176_0577
symbol: EFQ56327.1
gene_biotype: protein_coding
description:
  Transporter, dicarboxylate/amino acid:cation Na+/H+ symporter family protein; Identified by match to protein family HMM PF00375.


ensembl_gene_id: HMPREF9176_0584
symbol: gidB
gene_biotype: protein_coding
description:
  16S rRNA methyltransferase GidB; Identified by match to protein family HMM PF02527; match to protein family HMM TIGR00138.


ensembl_gene_id: HMPREF9176_0589
symbol: nrdR
gene_biotype: protein_coding
description:
  Transcriptional regulator NrdR; Identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244.


ensembl_gene_id: HMPREF9176_0590
symbol: EFQ56202.1
gene_biotype: protein_coding
description:
  Replication initiation and membrane attachment protein, DnaB/DnaD family; Identified by match to protein family HMM PF07261.


ensembl_gene_id: HMPREF9176_0593
symbol: der
gene_biotype: protein_coding
description:
  Ribosome biogenesis GTPase Der; Identified by match to protein family HMM PF01926; match to protein family HMM PF08477; match to protein family HMM TIGR00231; match to protein family HMM TIGR03594.


ensembl_gene_id: HMPREF9176_0595
symbol: EFQ56312.1
gene_biotype: protein_coding
description:
  SNF2 family N-terminal domain protein; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF08455.


ensembl_gene_id: HMPREF9176_0609
symbol: EFQ58300.1
gene_biotype: protein_coding
description:
  Cytidine and deoxycytidylate deaminase zinc-binding region; Identified by match to protein family HMM PF00383.


ensembl_gene_id: HMPREF9176_0611
symbol: proS
gene_biotype: protein_coding
description:
  proline--tRNA ligase; Identified by match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM PF04073; match to protein family HMM TIGR00409.


ensembl_gene_id: HMPREF9176_0612
symbol: rseP
gene_biotype: protein_coding
description:
  RIP metalloprotease RseP; Identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054.


ensembl_gene_id: HMPREF9176_0614
symbol: uppS
gene_biotype: protein_coding
description:
  Di-trans,poly-cis-decaprenylcistransferase; Identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055.


ensembl_gene_id: HMPREF9176_0615
symbol: yajC
gene_biotype: protein_coding
description:
  Preprotein translocase, YajC subunit; Identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739.


ensembl_gene_id: HMPREF9176_0617
symbol: EFQ58294.1
gene_biotype: protein_coding
description:
  TIM-barrel protein, nifR3 family; Identified by match to protein family HMM PF01180; match to protein family HMM PF01207; match to protein family HMM TIGR00737.


ensembl_gene_id: HMPREF9176_0618
symbol: EFQ58354.1
gene_biotype: protein_coding
description:
  C4-dicarboxylate transporter/malic acid transport protein; Identified by match to protein family HMM PF03595.


ensembl_gene_id: HMPREF9176_0620
symbol: EFQ58278.1
gene_biotype: protein_coding
description:
  Ketose-bisphosphate aldolase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167.


ensembl_gene_id: HMPREF9176_0622
symbol: clpC
gene_biotype: protein_coding
description:
  ATPase family associated with various cellular activities (AAA); Identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728.


ensembl_gene_id: HMPREF9176_0626
symbol: tsf
gene_biotype: protein_coding
description:
  Translation elongation factor Ts; Identified by match to protein family HMM PF00627; match to protein family HMM PF00889; match to protein family HMM TIGR00116.


ensembl_gene_id: HMPREF9176_0627
symbol: rpsB
gene_biotype: protein_coding
description:
  Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011.


ensembl_gene_id: HMPREF9176_0630
symbol: argF
gene_biotype: protein_coding
description:
  Ornithine carbamoyltransferase; Identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00658.


ensembl_gene_id: HMPREF9176_0632
symbol: aguA
gene_biotype: protein_coding
description:
  Agmatine deiminase; Identified by match to protein family HMM PF04371; match to protein family HMM TIGR03380.


ensembl_gene_id: HMPREF9176_0633
symbol: arcC
gene_biotype: protein_coding
description:
  Carbamate kinase; Identified by match to protein family HMM PF00696; match to protein family HMM TIGR00746.


ensembl_gene_id: HMPREF9176_0636
symbol: pepO
gene_biotype: protein_coding
description:
  Peptidase family M13; Identified by match to protein family HMM PF01431; match to protein family HMM PF05649.


ensembl_gene_id: HMPREF9176_0637
symbol: treC
gene_biotype: protein_coding
description:
  Alpha,alpha-phosphotrehalase; Identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403.


ensembl_gene_id: HMPREF9176_0638
symbol: treP
gene_biotype: protein_coding
description:
  PTS system trehalose-specific IIBC component; Identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR01992.


ensembl_gene_id: HMPREF9176_0639
symbol: treR
gene_biotype: protein_coding
description:
  Trehalose operon repressor; Identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02404.


ensembl_gene_id: HMPREF9176_0651
symbol: dex
gene_biotype: protein_coding
description:
  Putative dextranase; Identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167.


ensembl_gene_id: HMPREF9176_0654
symbol: dtd
gene_biotype: protein_coding
description:
  D-tyrosyl-tRNA(Tyr) deacylase; Identified by match to protein family HMM PF02580; match to protein family HMM TIGR00256.


ensembl_gene_id: HMPREF9176_0655
symbol: relA
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691.


ensembl_gene_id: HMPREF9176_0656
symbol: EFQ58343.1
gene_biotype: protein_coding
description:
  RNA methyltransferase, RsmE family; Identified by match to protein family HMM PF04452; match to protein family HMM TIGR00046.


ensembl_gene_id: HMPREF9176_0657
symbol: prmA
gene_biotype: protein_coding
description:
  Ribosomal protein L11 methyltransferase; Identified by match to protein family HMM PF05175; match to protein family HMM PF06325; match to protein family HMM TIGR00406.


ensembl_gene_id: HMPREF9176_0665
symbol: dapD
gene_biotype: protein_coding
description:
  2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase; Identified by match to protein family HMM PF00132; match to protein family HMM PF08503; match to protein family HMM TIGR03532.


ensembl_gene_id: HMPREF9176_0666
symbol: EFQ58267.1
gene_biotype: protein_coding
description:
  Amidohydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891.


ensembl_gene_id: HMPREF9176_0667
symbol: EFQ58348.1
gene_biotype: protein_coding
description:
  5-formyltetrahydrofolate cyclo-ligase; Identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727.


ensembl_gene_id: HMPREF9176_0670
symbol: nrdG
gene_biotype: protein_coding
description:
  Anaerobic ribonucleoside-triphosphate reductase activating protein; Identified by match to protein family HMM TIGR02491.


ensembl_gene_id: HMPREF9176_0671
symbol: EFQ58286.1
gene_biotype: protein_coding
description:
  Acetyltransferase, GNAT family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00583.


ensembl_gene_id: HMPREF9176_0672
symbol: EFQ58255.1
gene_biotype: protein_coding
description:
  Acetyltransferase, GNAT family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.


ensembl_gene_id: HMPREF9176_0676
symbol: nrdD
gene_biotype: protein_coding
description:
  Anaerobic ribonucleoside-triphosphate reductase; Identified by match to protein family HMM PF01228; match to protein family HMM PF03477; match to protein family HMM TIGR02487.


ensembl_gene_id: HMPREF9176_0680
symbol: EFQ58325.1
gene_biotype: protein_coding
description:
  RNAse H domain protein, YqgF family; Identified by match to protein family HMM PF03652; match to protein family HMM TIGR00250.


ensembl_gene_id: HMPREF9176_0688
symbol: purH
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Identified by match to protein family HMM PF01808; match to protein family HMM PF02142; match to protein family HMM TIGR00355.


ensembl_gene_id: HMPREF9176_0690
symbol: purN
gene_biotype: protein_coding
description:
  Phosphoribosylglycinamide formyltransferase; Identified by match to protein family HMM PF00551; match to protein family HMM TIGR00639.


ensembl_gene_id: HMPREF9176_0691
symbol: purM
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine cyclo-ligase; Identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00878.


ensembl_gene_id: HMPREF9176_0692
symbol: purF
gene_biotype: protein_coding
description:
  Amidophosphoribosyltransferase; Identified by match to protein family HMM PF00156; match to protein family HMM PF00310; match to protein family HMM TIGR01134.


ensembl_gene_id: HMPREF9176_0693
symbol: EFQ58310.1
gene_biotype: protein_coding
description:
  Phosphoribosylformylglycinamidine synthase; Identified by match to protein family HMM PF02769; match to protein family HMM TIGR01857.


ensembl_gene_id: HMPREF9176_0694
symbol: purC
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazolesuccinocarboxamide synthase; Identified by match to protein family HMM PF01259; match to protein family HMM TIGR00081.


ensembl_gene_id: HMPREF9176_0702
symbol: EFQ58346.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.


ensembl_gene_id: HMPREF9176_0711
symbol: plsX
gene_biotype: protein_coding
description:
  Fatty acid/phospholipid synthesis protein PlsX; Identified by match to protein family HMM PF02504; match to protein family HMM TIGR00182.


ensembl_gene_id: HMPREF9176_0712
symbol: recO
gene_biotype: protein_coding
description:
  DNA repair protein RecO; Identified by match to protein family HMM PF02565; match to protein family HMM TIGR00613.


ensembl_gene_id: HMPREF9176_0714
symbol: prs
gene_biotype: protein_coding
description:
  Ribose-phosphate diphosphokinase; Identified by match to protein family HMM PF00156; match to protein family HMM TIGR01251.


ensembl_gene_id: HMPREF9176_0717
symbol: mreC
gene_biotype: protein_coding
description:
  Rod shape-determining protein MreC; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF04085.


ensembl_gene_id: HMPREF9176_0747
symbol: mutY
gene_biotype: protein_coding
description:
  A/G-specific adenine glycosylase; Identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084.


ensembl_gene_id: HMPREF9176_0754
symbol: trxA
gene_biotype: protein_coding
description:
  Thioredoxin; Identified by match to protein family HMM PF00085; match to protein family HMM PF08534; match to protein family HMM TIGR01068.


ensembl_gene_id: HMPREF9176_0756
symbol: EFQ57254.1
gene_biotype: protein_coding
description:
  Copper-exporting ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.


ensembl_gene_id: HMPREF9176_0757
symbol: EFQ57175.1
gene_biotype: protein_coding
description:
  Copper transport repressor, CopY/TcrY family; Identified by match to protein family HMM PF03965; match to protein family HMM TIGR02698.


ensembl_gene_id: HMPREF9176_0761
symbol: rbfA
gene_biotype: protein_coding
description:
  Ribosome-binding factor A; Identified by match to protein family HMM PF02033; match to protein family HMM TIGR00082.


ensembl_gene_id: HMPREF9176_0762
symbol: infB
gene_biotype: protein_coding
description:
  Translation initiation factor IF-2; Identified by match to protein family HMM PF00009; match to protein family HMM PF01926; match to protein family HMM PF03144; match to protein family HMM PF04760; match to protein family HMM TIGR00231; match to protein family HMM TIGR00487.


ensembl_gene_id: HMPREF9176_0765
symbol: nusA
gene_biotype: protein_coding
description:
  Transcription termination factor NusA; Identified by match to protein family HMM PF00575; match to protein family HMM PF08529; match to protein family HMM TIGR01953.


ensembl_gene_id: HMPREF9176_0769
symbol: trmB
gene_biotype: protein_coding
description:
  tRNA (guanine-N(7)-)-methyltransferase; Identified by match to protein family HMM PF02390; match to protein family HMM TIGR00091.


ensembl_gene_id: HMPREF9176_0778
symbol: EFQ57219.1
gene_biotype: protein_coding
description:
  Hydrolase, P-loop family; Identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150.


ensembl_gene_id: HMPREF9176_0781
symbol: EFQ57232.1
gene_biotype: protein_coding
description:
  PTS system, mannose/fructose/sorbose family, IIB component; Identified by match to protein family HMM PF03610; match to protein family HMM PF03830.


ensembl_gene_id: HMPREF9176_0783
symbol: manZ_1
gene_biotype: protein_coding
description:
  PTS system, mannose/fructose/sorbose family, IID component; Identified by match to protein family HMM PF03613; match to protein family HMM TIGR00828.


ensembl_gene_id: HMPREF9176_0793
symbol: serS
gene_biotype: protein_coding
description:
  serine--tRNA ligase; Identified by match to protein family HMM PF00587; match to protein family HMM PF02403; match to protein family HMM TIGR00414.


ensembl_gene_id: HMPREF9176_0795
symbol: accA
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; Identified by match to protein family HMM PF03255; match to protein family HMM TIGR00513.


ensembl_gene_id: HMPREF9176_0796
symbol: accD
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Identified by match to protein family HMM TIGR00515.


ensembl_gene_id: HMPREF9176_0797
symbol: accC
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, biotin carboxylase subunit; Identified by match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM TIGR00514.


ensembl_gene_id: HMPREF9176_0799
symbol: fabZ
gene_biotype: protein_coding
description:
  (3R)-hydroxymyristoyl-ACP dehydratase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF07977.


ensembl_gene_id: HMPREF9176_0800
symbol: accB
gene_biotype: protein_coding
description:
  acetyl-CoA carboxylase, biotin carboxyl carrier protein; Identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531.


ensembl_gene_id: HMPREF9176_0801
symbol: fabF
gene_biotype: protein_coding
description:
  Beta-ketoacyl-acyl-carrier-protein synthase II; Identified by match to protein family HMM PF00109; match to protein family HMM PF02801; match to protein family HMM TIGR03150.


ensembl_gene_id: HMPREF9176_0802
symbol: fabG
gene_biotype: protein_coding
description:
  3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659; match to protein family HMM TIGR01830.


ensembl_gene_id: HMPREF9176_0803
symbol: fabD
gene_biotype: protein_coding
description:
  [acyl-carrier-protein] S-malonyltransferase; Identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128.


ensembl_gene_id: HMPREF9176_0804
symbol: EFQ57261.1
gene_biotype: protein_coding
description:
  Putative enoyl-[acyl-carrier-protein] reductase II; Identified by match to protein family HMM PF03060; match to protein family HMM TIGR03151.


ensembl_gene_id: HMPREF9176_0806
symbol: EFQ57184.1
gene_biotype: protein_coding
description:
  3-oxoacyl-(acyl carrier protein) synthase III; Identified by match to protein family HMM PF08541; match to protein family HMM PF08545; match to protein family HMM TIGR00747.


ensembl_gene_id: HMPREF9176_0807
symbol: EFQ57264.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047; match to protein family HMM PF03965.


ensembl_gene_id: HMPREF9176_0809
symbol: EFQ57201.1
gene_biotype: protein_coding
description:
  HAD hydrolase, family IA, variant 3; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549.


ensembl_gene_id: HMPREF9176_0810
symbol: EFQ57133.1
gene_biotype: protein_coding
description:
  Aspartate kinase; Identified by match to protein family HMM PF00696; match to protein family HMM PF01842; match to protein family HMM TIGR00657.


ensembl_gene_id: HMPREF9176_0811
symbol: EFQ57220.1
gene_biotype: protein_coding
description:
  Serine-type D-Ala-D-Ala carboxypeptidase; Identified by match to protein family HMM PF00144; match to protein family HMM PF00768; match to protein family HMM PF07943.


ensembl_gene_id: HMPREF9176_0813
symbol: cysS
gene_biotype: protein_coding
description:
  cysteine--tRNA ligase; Identified by match to protein family HMM PF01406; match to protein family HMM PF09190; match to protein family HMM PF09334; match to protein family HMM TIGR00435.


ensembl_gene_id: HMPREF9176_0817
symbol: pnp
gene_biotype: protein_coding
description:
  Polyribonucleotide nucleotidyltransferase; Identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; match to protein family HMM TIGR03591.


ensembl_gene_id: HMPREF9176_0820
symbol: rpsO
gene_biotype: protein_coding
description:
  Ribosomal protein S15; Identified by match to protein family HMM PF00312; match to protein family HMM TIGR00952.


ensembl_gene_id: HMPREF9176_0824
symbol: def
gene_biotype: protein_coding
description:
  Peptide deformylase; Identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079.


ensembl_gene_id: HMPREF9176_0832
symbol: EFQ57265.1
gene_biotype: protein_coding
description:
  Flavin reductase; Identified by match to protein family HMM PF02525; match to protein family HMM PF03358.


ensembl_gene_id: HMPREF9176_0835
symbol: polC
gene_biotype: protein_coding
description:
  DNA polymerase III, alpha subunit, Gram-positive type; Identified by match to protein family HMM PF00929; match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00573; match to protein family HMM TIGR01405.


ensembl_gene_id: HMPREF9176_0839
symbol: tgt
gene_biotype: protein_coding
description:
  tRNA-guanine transglycosylase; Identified by match to protein family HMM PF01702; match to protein family HMM TIGR00430; match to protein family HMM TIGR00449.


ensembl_gene_id: HMPREF9176_0840
symbol: EFQ57147.1
gene_biotype: protein_coding
description:
  PTS system IIBC component; Identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR02003.


ensembl_gene_id: HMPREF9176_0842
symbol: glgP
gene_biotype: protein_coding
description:
  Phosphorylase, glycogen/starch/alpha-glucan family; Identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093.


ensembl_gene_id: HMPREF9176_0843
symbol: malQ
gene_biotype: protein_coding
description:
  4-alpha-glucanotransferase; Identified by match to protein family HMM PF02446; match to protein family HMM TIGR00217.


ensembl_gene_id: HMPREF9176_0844
symbol: EFQ57296.1
gene_biotype: protein_coding
description:
  Putative trehalose operon repressor; Identified by match to protein family HMM PF00392; match to protein family HMM PF07702.


ensembl_gene_id: HMPREF9176_0847
symbol: purA
gene_biotype: protein_coding
description:
  Adenylosuccinate synthase; Identified by match to protein family HMM PF00709; match to protein family HMM TIGR00184.


ensembl_gene_id: HMPREF9176_0848
symbol: gshAB
gene_biotype: protein_coding
description:
  Glutamate--cysteine ligase/gamma-glutamylcysteine synthetase; Identified by match to protein family HMM PF04262; match to protein family HMM TIGR01435.


ensembl_gene_id: HMPREF9176_0850
symbol: EFQ57162.1
gene_biotype: protein_coding
description:
  Cyclopropane-fatty-acyl-phospholipid synthase; Identified by match to protein family HMM PF02353; match to protein family HMM PF08241; match to protein family HMM PF08242.


ensembl_gene_id: HMPREF9176_0851
symbol: nusG
gene_biotype: protein_coding
description:
  Transcription termination/antitermination factor NusG; Identified by match to protein family HMM PF00467; match to protein family HMM PF02357; match to protein family HMM TIGR00922.


ensembl_gene_id: HMPREF9176_0853
symbol: EFQ57267.1
gene_biotype: protein_coding
description:
  Oxidoreductase, NAD-binding domain protein; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.


ensembl_gene_id: HMPREF9176_0856
symbol: rpmG
gene_biotype: protein_coding
description:
  Ribosomal protein L33; Identified by match to protein family HMM PF00471; match to protein family HMM TIGR01023.


ensembl_gene_id: HMPREF9176_0858
symbol: EFQ57195.1
gene_biotype: protein_coding
description:
  Penicillin-binding protein, 1A family; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.


ensembl_gene_id: HMPREF9176_0860
symbol: EFQ57244.1
gene_biotype: protein_coding
description:
  ISSag8, transposase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.


ensembl_gene_id: HMPREF9176_0861
symbol: groL
gene_biotype: protein_coding
description:
  Chaperonin GroL; Identified by match to protein family HMM PF00118; match to protein family HMM TIGR02348.


ensembl_gene_id: HMPREF9176_0867
symbol: EFQ57258.1
gene_biotype: protein_coding
description:
  Thiopeptide-type bacteriocin biosynthesis domain protein; Identified by match to protein family HMM TIGR03891.


ensembl_gene_id: HMPREF9176_0868
symbol: EFQ57268.1
gene_biotype: protein_coding
description:
  YcaO-like family; Identified by match to protein family HMM PF02624; match to protein family HMM TIGR03604.


ensembl_gene_id: HMPREF9176_0872
symbol: EFQ57277.1
gene_biotype: protein_coding
description:
  Peptidase, M20/M25/M40 family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01546.


ensembl_gene_id: HMPREF9176_0882
symbol: pepA
gene_biotype: protein_coding
description:
  Glutamyl aminopeptidase; Identified by match to protein family HMM PF05343; match to protein family HMM TIGR03107.


ensembl_gene_id: HMPREF9176_0883
symbol: proC
gene_biotype: protein_coding
description:
  Pyrroline-5-carboxylate reductase; Identified by match to protein family HMM PF01210; match to protein family HMM PF03807; match to protein family HMM TIGR00112.


ensembl_gene_id: HMPREF9176_0886
symbol: EFQ57247.1
gene_biotype: protein_coding
description:
  EDD domain protein, DegV family; Identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762.


ensembl_gene_id: HMPREF9176_0888
symbol: EFQ57241.1
gene_biotype: protein_coding
description:
  RNA methyltransferase, TrmH family, group 3; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186.


ensembl_gene_id: HMPREF9176_0895
symbol: gpsA
gene_biotype: protein_coding
description:
  Glycerol-3-phosphate dehydrogenase [NAD(P)+]; Identified by match to protein family HMM PF01210; match to protein family HMM PF03721; match to protein family HMM PF07479.


ensembl_gene_id: HMPREF9176_0897
symbol: galU
gene_biotype: protein_coding
description:
  UTP--glucose-1-phosphate uridylyltransferase; Identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099.


ensembl_gene_id: HMPREF9176_0903
symbol: EFQ57177.1
gene_biotype: protein_coding
description:
  Addiction module antitoxin, RelB/DinJ family; Identified by match to protein family HMM PF04221; match to protein family HMM TIGR02384.


ensembl_gene_id: HMPREF9176_0913
symbol: EFQ56933.1
gene_biotype: protein_coding
description:
  Amino acid permease; Identified by match to protein family HMM PF00324; match to protein family HMM PF03845.


ensembl_gene_id: HMPREF9176_0914
symbol: hflB
gene_biotype: protein_coding
description:
  ATP-dependent metallopeptidase HflB; Identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241.


ensembl_gene_id: HMPREF9176_0915
symbol: hpt
gene_biotype: protein_coding
description:
  Hypoxanthine phosphoribosyltransferase; Identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203.


ensembl_gene_id: HMPREF9176_0916
symbol: tilS
gene_biotype: protein_coding
description:
  tRNA(Ile)-lysidine synthetase; Identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433.


ensembl_gene_id: HMPREF9176_0921
symbol: mfd
gene_biotype: protein_coding
description:
  Transcription-repair coupling factor; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580.


ensembl_gene_id: HMPREF9176_0922
symbol: pth
gene_biotype: protein_coding
description:
  aminoacyl-tRNA hydrolase; Identified by match to protein family HMM PF01195; match to protein family HMM TIGR00447.


ensembl_gene_id: HMPREF9176_0923
symbol: ychF
gene_biotype: protein_coding
description:
  GTP-binding protein YchF; Identified by match to protein family HMM PF01926; match to protein family HMM PF06071; match to protein family HMM TIGR00092.


ensembl_gene_id: HMPREF9176_0928
symbol: dnaN
gene_biotype: protein_coding
description:
  DNA polymerase III, beta subunit; Identified by match to protein family HMM PF00712; match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00663.


ensembl_gene_id: HMPREF9176_0929
symbol: dnaA
gene_biotype: protein_coding
description:
  Chromosomal replication initiator protein DnaA; Identified by match to protein family HMM PF00308; match to protein family HMM PF08299; match to protein family HMM TIGR00362.


ensembl_gene_id: HMPREF9176_0932
symbol: rlmH
gene_biotype: protein_coding
description:
  rRNA large subunit m3Psi methyltransferase RlmH; Identified by match to protein family HMM PF02590; match to protein family HMM TIGR00246.


ensembl_gene_id: HMPREF9176_0937
symbol: trpS
gene_biotype: protein_coding
description:
  tryptophan--tRNA ligase; Identified by match to protein family HMM PF00579; match to protein family HMM TIGR00233.


ensembl_gene_id: HMPREF9176_0938
symbol: guaB
gene_biotype: protein_coding
description:
  Inosine-5'-monophosphate dehydrogenase; Identified by match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM TIGR01302.


ensembl_gene_id: HMPREF9176_0940
symbol: recF
gene_biotype: protein_coding
description:
  DNA replication and repair protein RecF; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM TIGR00611.


ensembl_gene_id: HMPREF9176_0941
symbol: yaaA
gene_biotype: protein_coding
description:
  S4 domain protein YaaA; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM TIGR02988.


ensembl_gene_id: HMPREF9176_0943
symbol: EFQ56952.1
gene_biotype: protein_coding
description:
  Peptidase M16 inactive domain protein; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193.


ensembl_gene_id: HMPREF9176_0945
symbol: pgsA
gene_biotype: protein_coding
description:
  CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560.


ensembl_gene_id: HMPREF9176_0949
symbol: EFQ56950.1
gene_biotype: protein_coding
description:
  LysM domain protein; Identified by match to protein family HMM PF01476; match to protein family HMM PF06737.


ensembl_gene_id: HMPREF9176_0952
symbol: trmU
gene_biotype: protein_coding
description:
  tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Identified by match to protein family HMM PF03054; match to protein family HMM TIGR00420.


ensembl_gene_id: HMPREF9176_0957
symbol: gidA
gene_biotype: protein_coding
description:
  tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Identified by match to protein family HMM PF01134; match to protein family HMM TIGR00136.


ensembl_gene_id: HMPREF9176_0958
symbol: EFQ56880.1
gene_biotype: protein_coding
description:
  DHHA1 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272.


ensembl_gene_id: HMPREF9176_0959
symbol: rplI
gene_biotype: protein_coding
description:
  Ribosomal protein L9; Identified by match to protein family HMM PF01281; match to protein family HMM PF03948; match to protein family HMM TIGR00158.


ensembl_gene_id: HMPREF9176_0960
symbol: dnaB
gene_biotype: protein_coding
description:
  Replicative DNA helicase; Identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665.


ensembl_gene_id: HMPREF9176_0962
symbol: rpsD
gene_biotype: protein_coding
description:
  Ribosomal protein S4; Identified by match to protein family HMM PF00163; match to protein family HMM PF01479; match to protein family HMM TIGR01017.


ensembl_gene_id: HMPREF9176_0964
symbol: EFQ56917.1
gene_biotype: protein_coding
description:
  YhgE/Pip domain protein; Identified by match to protein family HMM TIGR03061; match to protein family HMM TIGR03062.


ensembl_gene_id: HMPREF9176_0970
symbol: cadA
gene_biotype: protein_coding
description:
  Cadmium-exporting ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525.


ensembl_gene_id: HMPREF9176_0974
symbol: EFQ56903.1
gene_biotype: protein_coding
description:
  Transposase, Mutator family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00872.


ensembl_gene_id: HMPREF9176_0978
symbol: rpmF
gene_biotype: protein_coding
description:
  Ribosomal protein L32; Identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031.


ensembl_gene_id: HMPREF9176_0979
symbol: hisS
gene_biotype: protein_coding
description:
  histidine--tRNA ligase; Identified by match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00442.


ensembl_gene_id: HMPREF9176_0981
symbol: aspS
gene_biotype: protein_coding
description:
  aspartate--tRNA ligase; Identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM PF02938; match to protein family HMM TIGR00459.


ensembl_gene_id: HMPREF9176_0984
symbol: argS
gene_biotype: protein_coding
description:
  arginine--tRNA ligase; Identified by match to protein family HMM PF00750; match to protein family HMM PF03485; match to protein family HMM PF05746; match to protein family HMM TIGR00456.


ensembl_gene_id: HMPREF9176_0985
symbol: argR
gene_biotype: protein_coding
description:
  Arginine repressor; Identified by match to protein family HMM PF01316; match to protein family HMM PF02863; match to protein family HMM TIGR01529.


ensembl_gene_id: HMPREF9176_0987
symbol: mutS
gene_biotype: protein_coding
description:
  DNA mismatch repair protein MutS; Identified by match to protein family HMM PF00488; match to protein family HMM PF01624; match to protein family HMM PF05188; match to protein family HMM PF05190; match to protein family HMM PF05192; match to protein family HMM TIGR01070.


ensembl_gene_id: HMPREF9176_0988
symbol: mutL
gene_biotype: protein_coding
description:
  DNA mismatch repair domain protein; Identified by match to protein family HMM PF01119; match to protein family HMM PF02518; match to protein family HMM PF08676; match to protein family HMM TIGR00585.


ensembl_gene_id: HMPREF9176_0990
symbol: ruvA
gene_biotype: protein_coding
description:
  Holliday junction DNA helicase RuvA; Identified by match to protein family HMM PF01330; match to protein family HMM PF07499; match to protein family HMM TIGR00084.


ensembl_gene_id: HMPREF9176_0993
symbol: EFQ56924.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF02687.


ensembl_gene_id: HMPREF9176_0994
symbol: EFQ56836.1
gene_biotype: protein_coding
description:
  Competence/damage-inducible domain protein CinA; Identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200.


ensembl_gene_id: HMPREF9176_0995
symbol: recA
gene_biotype: protein_coding
description:
  RecA protein; Identified by match to protein family HMM PF00154; match to protein family HMM TIGR02012.


ensembl_gene_id: HMPREF9176_0996
symbol: EFQ56889.1
gene_biotype: protein_coding
description:
  Transposase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.


ensembl_gene_id: HMPREF9176_0997
symbol: spxA
gene_biotype: protein_coding
description:
  Transcriptional regulator Spx; Identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617.


ensembl_gene_id: HMPREF9176_1018
symbol: EFQ56901.1
gene_biotype: protein_coding
description:
  AMP-binding enzyme; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00109; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00698; match to protein family HMM PF02801; match to protein family HMM TIGR01733.


ensembl_gene_id: HMPREF9176_1019
symbol: EFQ56856.1
gene_biotype: protein_coding
description:
  AMP-binding enzyme; Identified by match to protein family HMM PF00109; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF02801.


ensembl_gene_id: HMPREF9176_1025
symbol: EFQ56841.1
gene_biotype: protein_coding
description:
  Efflux ABC transporter, permease protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02687.


ensembl_gene_id: HMPREF9176_1027
symbol: EFQ56927.1
gene_biotype: protein_coding
description:
  3-hydroxyacyl-CoA dehydrogenase, C-terminal domain protein; Identified by match to protein family HMM PF00725; match to protein family HMM PF02737.


ensembl_gene_id: HMPREF9176_1029
symbol: EFQ56878.1
gene_biotype: protein_coding
description:
  FkbH domain protein; Identified by match to protein family HMM TIGR01681; match to protein family HMM TIGR01686.


ensembl_gene_id: HMPREF9176_1030
symbol: EFQ56943.1
gene_biotype: protein_coding
description:
  acyl-CoA dehydrogenase, C-terminal domain protein; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.


ensembl_gene_id: HMPREF9176_1032
symbol: etfA
gene_biotype: protein_coding
description:
  Electron transfer flavoprotein FAD-binding domain protein; Identified by match to protein family HMM PF00766; match to protein family HMM PF01012.


ensembl_gene_id: HMPREF9176_1039
symbol: purD
gene_biotype: protein_coding
description:
  Phosphoribosylamine--glycine ligase; Identified by match to protein family HMM PF01071; match to protein family HMM PF02222; match to protein family HMM PF02655; match to protein family HMM PF02843; match to protein family HMM PF02844; match to protein family HMM PF08442; match to protein family HMM TIGR00877.


ensembl_gene_id: HMPREF9176_1042
symbol: purE
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, catalytic subunit; Identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162.


ensembl_gene_id: HMPREF9176_1043
symbol: purK
gene_biotype: protein_coding
description:
  Phosphoribosylaminoimidazole carboxylase, ATPase subunit; Identified by match to protein family HMM PF02222; match to protein family HMM TIGR01161.


ensembl_gene_id: HMPREF9176_1047
symbol: purB
gene_biotype: protein_coding
description:
  Adenylosuccinate lyase; Identified by match to protein family HMM PF00206; match to protein family HMM TIGR00928.


ensembl_gene_id: HMPREF9176_1056
symbol: murC
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramate--L-alanine ligase; Identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01082.


ensembl_gene_id: HMPREF9176_1059
symbol: greA
gene_biotype: protein_coding
description:
  Transcription elongation factor GreA; Identified by match to protein family HMM PF01272; match to protein family HMM PF03449; match to protein family HMM TIGR01462.


ensembl_gene_id: HMPREF9176_1062
symbol: EFQ56778.1
gene_biotype: protein_coding
description:
  Membrane protein insertase, YidC/Oxa1 family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02096; match to protein family HMM TIGR03592.


ensembl_gene_id: HMPREF9176_1064
symbol: EFQ56510.1
gene_biotype: protein_coding
description:
  RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032.


ensembl_gene_id: HMPREF9176_1069
symbol: miaA
gene_biotype: protein_coding
description:
  tRNA dimethylallyltransferase; Identified by match to protein family HMM PF01715; match to protein family HMM TIGR00174.


ensembl_gene_id: HMPREF9176_1070
symbol: EFQ56516.1
gene_biotype: protein_coding
description:
  Tex-like protein N-terminal domain protein; Identified by match to protein family HMM PF00575; match to protein family HMM PF09371.


ensembl_gene_id: HMPREF9176_1073
symbol: hprK
gene_biotype: protein_coding
description:
  HPr(Ser) kinase/phosphatase; Identified by match to protein family HMM PF02603; match to protein family HMM PF07475.


ensembl_gene_id: HMPREF9176_1074
symbol: lgt
gene_biotype: protein_coding
description:
  Prolipoprotein diacylglyceryl transferase; Identified by match to protein family HMM PF01790; match to protein family HMM TIGR00544.


ensembl_gene_id: HMPREF9176_1081
symbol: comEA
gene_biotype: protein_coding
description:
  comEA protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426.


ensembl_gene_id: HMPREF9176_1082
symbol: EFQ56595.1
gene_biotype: protein_coding
description:
  DNA internalization competence protein ComEC/Rec2-like protein; Identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.


ensembl_gene_id: HMPREF9176_1087
symbol: holA
gene_biotype: protein_coding
description:
  DNA polymerase III, delta subunit; Identified by match to protein family HMM PF06144; match to protein family HMM TIGR01128.


ensembl_gene_id: HMPREF9176_1089
symbol: sodA
gene_biotype: protein_coding
description:
  Superoxide dismutase; Identified by match to protein family HMM PF00081; match to protein family HMM PF02777.


ensembl_gene_id: HMPREF9176_1092
symbol: queA
gene_biotype: protein_coding
description:
  S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Identified by match to protein family HMM PF02547; match to protein family HMM TIGR00113.


ensembl_gene_id: HMPREF9176_1093
symbol: nagB
gene_biotype: protein_coding
description:
  Glucosamine-6-phosphate deaminase; Identified by match to protein family HMM PF01182; match to protein family HMM TIGR00502.


ensembl_gene_id: HMPREF9176_1102
symbol: pepF
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181.


ensembl_gene_id: HMPREF9176_1104
symbol: typA
gene_biotype: protein_coding
description:
  GTP-binding protein TypA; Identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394.


ensembl_gene_id: HMPREF9176_1106
symbol: murD
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase; Identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01087.


ensembl_gene_id: HMPREF9176_1107
symbol: EFQ56621.1
gene_biotype: protein_coding
description:
  Putative undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Identified by match to protein family HMM PF03033; match to protein family HMM PF04101.


ensembl_gene_id: HMPREF9176_1108
symbol: EFQ56725.1
gene_biotype: protein_coding
description:
  Cell division protein FtsQ; Identified by match to protein family HMM PF03799; match to protein family HMM PF08478.


ensembl_gene_id: HMPREF9176_1113
symbol: EFQ56551.1
gene_biotype: protein_coding
description:
  LytS/YhcK-type transmembrane receptor domain protein; Identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF06580; match to protein family HMM PF07694.


ensembl_gene_id: HMPREF9176_1116
symbol: prfC
gene_biotype: protein_coding
description:
  Peptide chain release factor 3; Identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00503.


ensembl_gene_id: HMPREF9176_1119
symbol: EFQ56762.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, ArsR family; Identified by match to protein family HMM PF01022; match to protein family HMM PF08279.


ensembl_gene_id: HMPREF9176_1121
symbol: EFQ56757.1
gene_biotype: protein_coding
description:
  Gram-positive signal peptide protein, YSIRK family; Identified by match to protein family HMM PF01473; match to protein family HMM PF04650; match to protein family HMM TIGR01168.


ensembl_gene_id: HMPREF9176_1123
symbol: EFQ56513.1
gene_biotype: protein_coding
description:
  Putative phosphoesterase; Identified by match to protein family HMM PF00149; match to protein family HMM TIGR03729.


ensembl_gene_id: HMPREF9176_1126
symbol: prfB
gene_biotype: protein_coding
description:
  Peptide chain release factor 2; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00020.


ensembl_gene_id: HMPREF9176_1127
symbol: ftsE
gene_biotype: protein_coding
description:
  Cell division ATP-binding protein FtsE; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR02673.


ensembl_gene_id: HMPREF9176_1134
symbol: EFQ56784.1
gene_biotype: protein_coding
description:
  ABC-2 type transporter; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF01061.


ensembl_gene_id: HMPREF9176_1139
symbol: EFQ56735.1
gene_biotype: protein_coding
description:
  Isoprenylcysteine carboxyl methyltransferase family protein; Identified by match to protein family HMM PF04140.


ensembl_gene_id: HMPREF9176_1140
symbol: EFQ56632.1
gene_biotype: protein_coding
description:
  Transposase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01610.


ensembl_gene_id: HMPREF9176_1143
symbol: asnA
gene_biotype: protein_coding
description:
  Aspartate--ammonia ligase; Identified by match to protein family HMM PF03590; match to protein family HMM TIGR00669.


ensembl_gene_id: HMPREF9176_1146
symbol: EFQ56694.1
gene_biotype: protein_coding
description:
  RNA methyltransferase, RsmD family; Identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095.


ensembl_gene_id: HMPREF9176_1147
symbol: coaD
gene_biotype: protein_coding
description:
  Pantetheine-phosphate adenylyltransferase; Identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR01510.


ensembl_gene_id: HMPREF9176_1150
symbol: rlmN
gene_biotype: protein_coding
description:
  23S rRNA m2A2503 methyltransferase; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR00048.


ensembl_gene_id: HMPREF9176_1155
symbol: EFQ56593.1
gene_biotype: protein_coding
description:
  Putative cross-wall-targeting lipoprotein signal; Identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167; match to protein family HMM TIGR03726.


ensembl_gene_id: HMPREF9176_1162
symbol: EFQ56672.1
gene_biotype: protein_coding
description:
  Dihydroorotate dehydrogenase 1A; Identified by match to protein family HMM PF01180; match to protein family HMM TIGR01037.


ensembl_gene_id: HMPREF9176_1165
symbol: EFQ56586.1
gene_biotype: protein_coding
description:
  Phosphoglycerate mutase 1 family; Identified by match to protein family HMM PF00300; match to protein family HMM TIGR01258.


ensembl_gene_id: HMPREF9176_1166
symbol: EFQ56575.1
gene_biotype: protein_coding
description:
  Penicillin-binding protein, transpeptidase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717.


ensembl_gene_id: HMPREF9176_1167
symbol: recR
gene_biotype: protein_coding
description:
  Recombination protein RecR; Identified by match to protein family HMM PF01751; match to protein family HMM PF02132; match to protein family HMM TIGR00615.


ensembl_gene_id: HMPREF9176_1170
symbol: EFQ56683.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, TetR family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00440.


ensembl_gene_id: HMPREF9176_1171
symbol: csn1
gene_biotype: protein_coding
description:
  CRISPR-associated protein, Csn1 family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM TIGR01865.


ensembl_gene_id: HMPREF9176_1173
symbol: cas1
gene_biotype: protein_coding
description:
  CRISPR-associated endonuclease Cas1, NMENI subtype; Identified by match to protein family HMM TIGR00287; match to protein family HMM TIGR03639.


ensembl_gene_id: HMPREF9176_1174
symbol: csn2
gene_biotype: protein_coding
description:
  CRISPR-associated protein, Csn2 family; Identified by match to protein family HMM PF09711; match to protein family HMM TIGR01866.


ensembl_gene_id: HMPREF9176_1177
symbol: EFQ56499.1
gene_biotype: protein_coding
description:
  BAAT/acyl-CoA thioester hydrolase C-terminal domain protein; Identified by match to protein family HMM PF08840.


ensembl_gene_id: HMPREF9176_1178
symbol: EFQ56684.1
gene_biotype: protein_coding
description:
  D-ala D-ala ligase N-terminal domain protein; Identified by match to protein family HMM PF01820; match to protein family HMM PF02222; match to protein family HMM PF07478; match to protein family HMM TIGR01205.


ensembl_gene_id: HMPREF9176_1182
symbol: murF
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143.


ensembl_gene_id: HMPREF9176_1190
symbol: acoB
gene_biotype: protein_coding
description:
  Transketolase, pyridine binding domain protein; Identified by match to protein family HMM PF02779; match to protein family HMM PF02780.


ensembl_gene_id: HMPREF9176_1191
symbol: EFQ56618.1
gene_biotype: protein_coding
description:
  Branched-chain alpha-keto acid dehydrogenase subunit E2; Identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817.


ensembl_gene_id: HMPREF9176_1192
symbol: lpdA
gene_biotype: protein_coding
description:
  Dihydrolipoyl dehydrogenase; Identified by match to protein family HMM PF00070; match to protein family HMM PF00364; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350.


ensembl_gene_id: HMPREF9176_1193
symbol: EFQ56544.1
gene_biotype: protein_coding
description:
  Lipoyltransferase and lipoate-protein ligase; Identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545.


ensembl_gene_id: HMPREF9176_1194
symbol: EFQ56531.1
gene_biotype: protein_coding
description:
  LPXTG-motif cell wall anchor domain protein; Identified by match to protein family HMM PF00746; match to protein family HMM PF08363; match to protein family HMM TIGR01167.


ensembl_gene_id: HMPREF9176_1199
symbol: EFQ56670.1
gene_biotype: protein_coding
description:
  Mur ligase middle domain protein; Identified by match to protein family HMM PF08245; match to protein family HMM PF08353.


ensembl_gene_id: HMPREF9176_1205
symbol: EFQ56542.1
gene_biotype: protein_coding
description:
  Gram-positive signal peptide protein, YSIRK family; Identified by match to protein family HMM PF07949.


ensembl_gene_id: HMPREF9176_1206
symbol: glmM
gene_biotype: protein_coding
description:
  Phosphoglucosamine mutase; Identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; match to protein family HMM TIGR01455.


ensembl_gene_id: HMPREF9176_1207
symbol: EFQ56607.1
gene_biotype: protein_coding
description:
  Pseudouridylate synthase; Identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093.


ensembl_gene_id: HMPREF9176_1209
symbol: cgtA
gene_biotype: protein_coding
description:
  Obg family GTPase CgtA; Identified by match to protein family HMM PF01018; match to protein family HMM PF01926; match to protein family HMM PF09269; match to protein family HMM TIGR00231; match to protein family HMM TIGR02729; match to protein family HMM TIGR03595.


ensembl_gene_id: HMPREF9176_1213
symbol: EFQ56581.1
gene_biotype: protein_coding
description:
  Lysine-arginine-ornithine-binding periplasmic protein; Identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726.


ensembl_gene_id: HMPREF9176_1214
symbol: uvrB
gene_biotype: protein_coding
description:
  Excinuclease ABC, B subunit; Identified by match to protein family HMM PF00271; match to protein family HMM PF02151; match to protein family HMM PF04851; match to protein family HMM TIGR00631.


ensembl_gene_id: HMPREF9176_1218
symbol: rpsU
gene_biotype: protein_coding
description:
  Ribosomal protein S21; Identified by match to protein family HMM PF01165; match to protein family HMM TIGR00030.


ensembl_gene_id: HMPREF9176_1221
symbol: mscL
gene_biotype: protein_coding
description:
  Large conductance mechanosensitive channel protein; Identified by match to protein family HMM PF01741; match to protein family HMM TIGR00220.


ensembl_gene_id: HMPREF9176_1222
symbol: dnaG
gene_biotype: protein_coding
description:
  DNA primase; Identified by match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM PF08275; match to protein family HMM TIGR01391.


ensembl_gene_id: HMPREF9176_1223
symbol: rpoD
gene_biotype: protein_coding
description:
  RNA polymerase sigma factor RpoD; Identified by match to protein family HMM PF00140; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02393; match to protein family HMM TIGR02937.


ensembl_gene_id: HMPREF9176_1226
symbol: rfbD
gene_biotype: protein_coding
description:
  dTDP-4-dehydrorhamnose reductase; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214.


ensembl_gene_id: HMPREF9176_1235
symbol: EFQ56540.1
gene_biotype: protein_coding
description:
  Glycosyltransferase, group 2 family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00535.


ensembl_gene_id: HMPREF9176_1241
symbol: EFQ56642.1
gene_biotype: protein_coding
description:
  Ricin-type beta-trefoil lectin domain protein; Identified by match to protein family HMM PF00652; match to protein family HMM PF05257.


ensembl_gene_id: HMPREF9176_1242
symbol: EFQ56574.1
gene_biotype: protein_coding
description:
  Glycerate kinase; Identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045.


ensembl_gene_id: HMPREF9176_1247
symbol: sbcD
gene_biotype: protein_coding
description:
  Exonuclease SbcCD, D subunit; Identified by match to protein family HMM PF00149; match to protein family HMM TIGR00619.


ensembl_gene_id: HMPREF9176_1252
symbol: EFQ56681.1
gene_biotype: protein_coding
description:
  Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653.


ensembl_gene_id: HMPREF9176_1255
symbol: EFQ56729.1
gene_biotype: protein_coding
description:
  UvrD/REP helicase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.


ensembl_gene_id: HMPREF9176_1256
symbol: EFQ56804.1
gene_biotype: protein_coding
description:
  Putative ATP-dependent nuclease subunit A; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.


ensembl_gene_id: HMPREF9176_1257
symbol: gtfA
gene_biotype: protein_coding
description:
  Accessory Sec system glycosylation protein GtfA; Identified by match to protein family HMM PF00534; match to protein family HMM PF09318; match to protein family HMM TIGR02918.


ensembl_gene_id: HMPREF9176_1261
symbol: EFQ56805.1
gene_biotype: protein_coding
description:
  Putative oxygen-independent coproporphyrinogen III oxidase; Identified by match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00539.


ensembl_gene_id: HMPREF9176_1263
symbol: EFQ56608.1
gene_biotype: protein_coding
description:
  HAD hydrolase, TIGR01457 family; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01457; match to protein family HMM TIGR01460.


ensembl_gene_id: HMPREF9176_1266
symbol: lepA
gene_biotype: protein_coding
description:
  GTP-binding protein LepA; Identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF06421; match to protein family HMM TIGR00231; match to protein family HMM TIGR01393.


ensembl_gene_id: HMPREF9176_1268
symbol: EFQ56641.1
gene_biotype: protein_coding
description:
  Glycosyl hydrolase family 25; Identified by match to protein family HMM PF01183; match to protein family HMM PF08481; match to protein family HMM TIGR03715.


ensembl_gene_id: HMPREF9176_1272
symbol: cmk
gene_biotype: protein_coding
description:
  Cytidylate kinase; Identified by match to protein family HMM PF02224; match to protein family HMM TIGR00017.


ensembl_gene_id: HMPREF9176_1274
symbol: infC
gene_biotype: protein_coding
description:
  Translation initiation factor IF-3; Identified by match to protein family HMM PF00707; match to protein family HMM PF05198; match to protein family HMM TIGR00168.


ensembl_gene_id: HMPREF9176_1275
symbol: rpmI
gene_biotype: protein_coding
description:
  Ribosomal protein L35; Identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001.


ensembl_gene_id: HMPREF9176_1276
symbol: rplT
gene_biotype: protein_coding
description:
  Ribosomal protein L20; Identified by match to protein family HMM PF00453; match to protein family HMM TIGR01032.


ensembl_gene_id: HMPREF9176_1278
symbol: aroA
gene_biotype: protein_coding
description:
  3-phosphoshikimate 1-carboxyvinyltransferase; Identified by match to protein family HMM PF00275; match to protein family HMM TIGR01356.


ensembl_gene_id: HMPREF9176_1281
symbol: EFQ56648.1
gene_biotype: protein_coding
description:
  Cell envelope-like function transcriptional attenuator common domain protein; Identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350.


ensembl_gene_id: HMPREF9176_1287
symbol: EFQ56714.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, AbrB family; Identified by match to protein family HMM PF01381; match to protein family HMM PF04014; match to protein family HMM TIGR01439.


ensembl_gene_id: HMPREF9176_1291
symbol: EFQ56530.1
gene_biotype: protein_coding
description:
  Bacterial transferase hexapeptide repeat protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00132.


ensembl_gene_id: HMPREF9176_1293
symbol: EFQ56716.1
gene_biotype: protein_coding
description:
  Oxidoreductase, aldo/keto reductase family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.


ensembl_gene_id: HMPREF9176_1294
symbol: EFQ56549.1
gene_biotype: protein_coding
description:
  Oxidoreductase, aldo/keto reductase family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00248.


ensembl_gene_id: HMPREF9176_1301
symbol: EFQ56773.1
gene_biotype: protein_coding
description:
  Putative 1-deoxy-D-xylulose-5-phosphate synthase; Identified by match to protein family HMM PF02779; match to protein family HMM PF02780.


ensembl_gene_id: HMPREF9176_1302
symbol: EFQ56553.1
gene_biotype: protein_coding
description:
  Oxidoreductase, aldo/keto reductase family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00248.


ensembl_gene_id: HMPREF9176_1304
symbol: EFQ56692.1
gene_biotype: protein_coding
description:
  Putative UTP--hexose-1-phosphate uridylyltransferase; Identified by match to protein family HMM PF02744.


ensembl_gene_id: HMPREF9176_1305
symbol: galE
gene_biotype: protein_coding
description:
  UDP-glucose 4-epimerase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179.


ensembl_gene_id: HMPREF9176_1309
symbol: EFQ56828.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, DeoR family; Identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279.


ensembl_gene_id: HMPREF9176_1310
symbol: lacA
gene_biotype: protein_coding
description:
  Galactose-6-phosphate isomerase, LacA subunit; Identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01118.


ensembl_gene_id: HMPREF9176_1311
symbol: lacB
gene_biotype: protein_coding
description:
  Galactose-6-phosphate isomerase, LacB subunit; Identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01119.


ensembl_gene_id: HMPREF9176_1312
symbol: lacD
gene_biotype: protein_coding
description:
  Tagatose-bisphosphate aldolase; Identified by match to protein family HMM PF01791; match to protein family HMM TIGR01232.


ensembl_gene_id: HMPREF9176_1313
symbol: EFQ56554.1
gene_biotype: protein_coding
description:
  PRD domain protein; Identified by match to protein family HMM PF00874; match to protein family HMM PF03123.


ensembl_gene_id: HMPREF9176_1314
symbol: lacF
gene_biotype: protein_coding
description:
  PTS system, lactose-specific IIa component; Identified by match to protein family HMM PF02255; match to protein family HMM TIGR00823.


ensembl_gene_id: HMPREF9176_1315
symbol: EFQ56597.1
gene_biotype: protein_coding
description:
  PTS system, lactose-specific IIC component; Identified by match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00394; match to protein family HMM TIGR00410; match to protein family HMM TIGR00853.


ensembl_gene_id: HMPREF9176_1316
symbol: lacG
gene_biotype: protein_coding
description:
  6-phospho-beta-galactosidase; Identified by match to protein family HMM PF00232; match to protein family HMM TIGR01233.


ensembl_gene_id: HMPREF9176_1334
symbol: EFQ56629.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, AraC family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.


ensembl_gene_id: HMPREF9176_1335
symbol: EFQ56606.1
gene_biotype: protein_coding
description:
  MFS transporter family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.


ensembl_gene_id: HMPREF9176_1336
symbol: EFQ56533.1
gene_biotype: protein_coding
description:
  MFS transporter; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.


ensembl_gene_id: HMPREF9176_1338
symbol: EFQ56809.1
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF00890; match to protein family HMM PF02525; match to protein family HMM PF03358.


ensembl_gene_id: HMPREF9176_1345
symbol: EFQ56703.1
gene_biotype: protein_coding
description:
  KxYKxGKxW signal domain protein; Identified by match to protein family HMM PF01473; match to protein family HMM PF02324; match to protein family HMM TIGR03715.


ensembl_gene_id: HMPREF9176_1348
symbol: EFQ56713.1
gene_biotype: protein_coding
description:
  Metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family; Identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197.


ensembl_gene_id: HMPREF9176_1351
symbol: EFQ56675.1
gene_biotype: protein_coding
description:
  Asp/Glu/Hydantoin racemase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF01177.


ensembl_gene_id: HMPREF9176_1352
symbol: EFQ56792.1
gene_biotype: protein_coding
description:
  Putative racemase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts.


ensembl_gene_id: HMPREF9176_1355
symbol: EFQ56810.1
gene_biotype: protein_coding
description:
  Hemerythrin HHE cation binding domain protein; Identified by match to protein family HMM PF01814; match to protein family HMM PF04282; match to protein family HMM TIGR00229.


ensembl_gene_id: HMPREF9176_1356
symbol: truB
gene_biotype: protein_coding
description:
  tRNA pseudouridine synthase B; Identified by match to protein family HMM PF01509; match to protein family HMM TIGR00431.


ensembl_gene_id: HMPREF9176_1357
symbol: ribF
gene_biotype: protein_coding
description:
  Riboflavin biosynthesis protein RibF; Identified by match to protein family HMM PF01467; match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083.


ensembl_gene_id: HMPREF9176_1363
symbol: pstS
gene_biotype: protein_coding
description:
  Phosphate binding protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM TIGR02136.


ensembl_gene_id: HMPREF9176_1364
symbol: pstC
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, permease protein PstC; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138.


ensembl_gene_id: HMPREF9176_1365
symbol: pstA
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, permease protein PstA; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974.


ensembl_gene_id: HMPREF9176_1366
symbol: pstB
gene_biotype: protein_coding
description:
  Phosphate ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR00972.


ensembl_gene_id: HMPREF9176_1368
symbol: phoU
gene_biotype: protein_coding
description:
  Phosphate transport system regulatory protein PhoU; Identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135.


ensembl_gene_id: HMPREF9176_1371
symbol: EFQ56514.1
gene_biotype: protein_coding
description:
  ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.


ensembl_gene_id: HMPREF9176_1372
symbol: rpsT
gene_biotype: protein_coding
description:
  Ribosomal protein S20; Identified by match to protein family HMM PF01649; match to protein family HMM TIGR00029.


ensembl_gene_id: HMPREF9176_1373
symbol: coaA
gene_biotype: protein_coding
description:
  Pantothenate kinase; Identified by match to protein family HMM PF00485; match to protein family HMM TIGR00554.


ensembl_gene_id: HMPREF9176_1374
symbol: EFQ56640.1
gene_biotype: protein_coding
description:
  Methyltransferase small domain protein; Identified by match to protein family HMM PF05175; match to protein family HMM PF08241; match to protein family HMM PF08242.


ensembl_gene_id: HMPREF9176_1375
symbol: pyn
gene_biotype: protein_coding
description:
  Pyrimidine-nucleoside phosphorylase; Identified by match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM PF07831; match to protein family HMM TIGR02644.


ensembl_gene_id: HMPREF9176_1376
symbol: deoC
gene_biotype: protein_coding
description:
  Deoxyribose-phosphate aldolase; Identified by match to protein family HMM PF01791; match to protein family HMM TIGR00126.


ensembl_gene_id: HMPREF9176_1377
symbol: cdd
gene_biotype: protein_coding
description:
  Cytidine deaminase; Identified by match to protein family HMM PF00383; match to protein family HMM TIGR01354.


ensembl_gene_id: HMPREF9176_1383
symbol: pulA
gene_biotype: protein_coding
description:
  Pullulanase, type I; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02104.


ensembl_gene_id: HMPREF9176_1384
symbol: glgB
gene_biotype: protein_coding
description:
  1,4-alpha-glucan branching enzyme; Identified by match to protein family HMM PF00128; match to protein family HMM PF02806; match to protein family HMM PF02922; match to protein family HMM TIGR01515.


ensembl_gene_id: HMPREF9176_1385
symbol: glgC
gene_biotype: protein_coding
description:
  Glucose-1-phosphate adenylyltransferase; Identified by match to protein family HMM PF00483; match to protein family HMM TIGR02091.


ensembl_gene_id: HMPREF9176_1386
symbol: glgD
gene_biotype: protein_coding
description:
  Glucose-1-phosphate adenylyltransferase, GlgD subunit; Identified by match to protein family HMM TIGR02092.


ensembl_gene_id: HMPREF9176_1387
symbol: glgA
gene_biotype: protein_coding
description:
  Glycogen/starch synthase, ADP-glucose type; Identified by match to protein family HMM PF00534; match to protein family HMM PF08323; match to protein family HMM TIGR02095.


ensembl_gene_id: HMPREF9176_1389
symbol: proV-2
gene_biotype: protein_coding
description:
  Glycine betaine/L-proline transport ATP binding subunit; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186.


ensembl_gene_id: HMPREF9176_1391
symbol: opuCC
gene_biotype: protein_coding
description:
  ABC transporter, substrate-binding protein, QAT family; Identified by match to protein family HMM PF04069.


ensembl_gene_id: HMPREF9176_1393
symbol: noxE
gene_biotype: protein_coding
description:
  Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992.


ensembl_gene_id: HMPREF9176_1394
symbol: EFQ57390.1
gene_biotype: protein_coding
description:
  L-lactate dehydrogenase; Identified by match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01771.


ensembl_gene_id: HMPREF9176_1395
symbol: gyrA
gene_biotype: protein_coding
description:
  DNA gyrase, A subunit; Identified by match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063.


ensembl_gene_id: HMPREF9176_1398
symbol: pgcA
gene_biotype: protein_coding
description:
  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Identified by match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880.


ensembl_gene_id: HMPREF9176_1400
symbol: coaC
gene_biotype: protein_coding
description:
  Phosphopantothenoylcysteine decarboxylase; Identified by match to protein family HMM PF02441; match to protein family HMM TIGR02113.


ensembl_gene_id: HMPREF9176_1401
symbol: coaB
gene_biotype: protein_coding
description:
  Phosphopantothenate--cysteine ligase; Identified by match to protein family HMM PF04127; match to protein family HMM TIGR02114.


ensembl_gene_id: HMPREF9176_1409
symbol: asd
gene_biotype: protein_coding
description:
  Aspartate-semialdehyde dehydrogenase; Identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296.


ensembl_gene_id: HMPREF9176_1410
symbol: dapA
gene_biotype: protein_coding
description:
  Dihydrodipicolinate synthase; Identified by match to protein family HMM PF00701; match to protein family HMM TIGR00674.


ensembl_gene_id: HMPREF9176_1414
symbol: ylqF
gene_biotype: protein_coding
description:
  Ribosome biogenesis GTP-binding protein YlqF; Identified by match to protein family HMM PF01926; match to protein family HMM TIGR03596.


ensembl_gene_id: HMPREF9176_1418
symbol: EFQ57713.1
gene_biotype: protein_coding
description:
  ROK family protein; Identified by match to protein family HMM PF00132; match to protein family HMM PF00480.


ensembl_gene_id: HMPREF9176_1419
symbol: dprA
gene_biotype: protein_coding
description:
  DNA protecting protein DprA; Identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732.


ensembl_gene_id: HMPREF9176_1421
symbol: topA
gene_biotype: protein_coding
description:
  DNA topoisomerase I; Identified by match to protein family HMM PF01131; match to protein family HMM PF01396; match to protein family HMM PF01751; match to protein family HMM TIGR01051.


ensembl_gene_id: HMPREF9176_1429
symbol: EFQ57398.1
gene_biotype: protein_coding
description:
  YbaK/proline--tRNA ligase associated domain protein; Identified by match to protein family HMM PF04073.


ensembl_gene_id: HMPREF9176_1435
symbol: EFQ57673.1
gene_biotype: protein_coding
description:
  ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF02518.


ensembl_gene_id: HMPREF9176_1444
symbol: EFQ57656.1
gene_biotype: protein_coding
description:
  Class IIb bacteriocin, lactobin A/cerein 7B family; Identified by match to protein family HMM TIGR03949.


ensembl_gene_id: HMPREF9176_1451
symbol: macB
gene_biotype: protein_coding
description:
  Efflux ABC transporter, permease protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF02687.


ensembl_gene_id: HMPREF9176_1454
symbol: EFQ57453.1
gene_biotype: protein_coding
description:
  Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659.


ensembl_gene_id: HMPREF9176_1456
symbol: rpsP
gene_biotype: protein_coding
description:
  Ribosomal protein S16; Identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002.


ensembl_gene_id: HMPREF9176_1464
symbol: rimM
gene_biotype: protein_coding
description:
  16S rRNA processing protein RimM; Identified by match to protein family HMM PF01782; match to protein family HMM PF05239; match to protein family HMM TIGR02273.


ensembl_gene_id: HMPREF9176_1465
symbol: trmD
gene_biotype: protein_coding
description:
  tRNA (guanine-N(1)-)-methyltransferase; Identified by match to protein family HMM PF01746; match to protein family HMM TIGR00088.


ensembl_gene_id: HMPREF9176_1466
symbol: EFQ57402.1
gene_biotype: protein_coding
description:
  Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992.


ensembl_gene_id: HMPREF9176_1468
symbol: EFQ57609.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, DeoR family; Identified by match to protein family HMM PF00455; match to protein family HMM PF08220.


ensembl_gene_id: HMPREF9176_1469
symbol: pfkB
gene_biotype: protein_coding
description:
  1-phosphofructokinase; Identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168; match to protein family HMM TIGR03828.


ensembl_gene_id: HMPREF9176_1470
symbol: fruA
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; Identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427.


ensembl_gene_id: HMPREF9176_1471
symbol: radC
gene_biotype: protein_coding
description:
  DNA repair protein RadC; Identified by match to protein family HMM PF04002; match to protein family HMM TIGR00608.


ensembl_gene_id: HMPREF9176_1472
symbol: EFQ57485.1
gene_biotype: protein_coding
description:
  Peptidase C26; Identified by match to protein family HMM PF00117; match to protein family HMM PF07722.


ensembl_gene_id: HMPREF9176_1473
symbol: EFQ57467.1
gene_biotype: protein_coding
description:
  CoA binding domain protein; Identified by match to protein family HMM PF02629; match to protein family HMM PF06971.


ensembl_gene_id: HMPREF9176_1480
symbol: EFQ57417.1
gene_biotype: protein_coding
description:
  Pseudouridine synthase, RluA family; Identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005.


ensembl_gene_id: HMPREF9176_1481
symbol: pta
gene_biotype: protein_coding
description:
  Phosphate acetyltransferase; Identified by match to protein family HMM PF01515; match to protein family HMM TIGR00651.


ensembl_gene_id: HMPREF9176_1482
symbol: sdh
gene_biotype: protein_coding
description:
  Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659.


ensembl_gene_id: HMPREF9176_1484
symbol: EFQ57361.1
gene_biotype: protein_coding
description:
  Cof-like hydrolase; Identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484.


ensembl_gene_id: HMPREF9176_1486
symbol: EFQ57425.1
gene_biotype: protein_coding
description:
  Lactate/malate dehydrogenase, NAD binding domain protein; Identified by match to protein family HMM PF00056; match to protein family HMM PF02866.


ensembl_gene_id: HMPREF9176_1488
symbol: EFQ57378.1
gene_biotype: protein_coding
description:
  hydroxymethylglutaryl-CoA synthase; Identified by match to protein family HMM PF01154; match to protein family HMM PF08540; match to protein family HMM TIGR01835.


ensembl_gene_id: HMPREF9176_1490
symbol: thyA
gene_biotype: protein_coding
description:
  Thymidylate synthase; Identified by match to protein family HMM PF00303; match to protein family HMM TIGR03284.


ensembl_gene_id: HMPREF9176_1491
symbol: EFQ57720.1
gene_biotype: protein_coding
description:
  Nicotinamide mononucleotide transporter; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF04973.


ensembl_gene_id: HMPREF9176_1494
symbol: clpX
gene_biotype: protein_coding
description:
  ATP-dependent Clp protease, ATP-binding subunit ClpX; Identified by match to protein family HMM PF00004; match to protein family HMM PF06689; match to protein family HMM PF07724; match to protein family HMM TIGR00382.


ensembl_gene_id: HMPREF9176_1495
symbol: ysxC
gene_biotype: protein_coding
description:
  Ribosome biogenesis GTP-binding protein YsxC; Identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR03598.


ensembl_gene_id: HMPREF9176_1501
symbol: rplL
gene_biotype: protein_coding
description:
  Ribosomal protein L7/L12; Identified by match to protein family HMM PF00542; match to protein family HMM TIGR00855.


ensembl_gene_id: HMPREF9176_1504
symbol: maa
gene_biotype: protein_coding
description:
  Bacterial transferase hexapeptide repeat protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00132.


ensembl_gene_id: HMPREF9176_1506
symbol: EFQ57475.1
gene_biotype: protein_coding
description:
  Bacterial sugar transferase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02397.


ensembl_gene_id: HMPREF9176_1507
symbol: EFQ57584.1
gene_biotype: protein_coding
description:
  Putative ATP synthase F0, A subunit; Identified by match to protein family HMM PF01943; match to protein family HMM PF03023.


ensembl_gene_id: HMPREF9176_1509
symbol: glf
gene_biotype: protein_coding
description:
  UDP-galactopyranose mutase; Identified by match to protein family HMM PF03275; match to protein family HMM TIGR00031.


ensembl_gene_id: HMPREF9176_1519
symbol: EFQ57400.1
gene_biotype: protein_coding
description:
  Plasmid stabilization system protein, RelE/ParE family; Identified by match to protein family HMM PF05016.


ensembl_gene_id: HMPREF9176_1523
symbol: EFQ57301.1
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331.


ensembl_gene_id: HMPREF9176_1526
symbol: mvk
gene_biotype: protein_coding
description:
  Mevalonate kinase; Identified by match to protein family HMM PF00288; match to protein family HMM PF08544; match to protein family HMM TIGR00549.


ensembl_gene_id: HMPREF9176_1527
symbol: mvaD
gene_biotype: protein_coding
description:
  Diphosphomevalonate decarboxylase; Identified by match to protein family HMM PF00288; match to protein family HMM PF08544; match to protein family HMM TIGR01240.


ensembl_gene_id: HMPREF9176_1528
symbol: EFQ57524.1
gene_biotype: protein_coding
description:
  Phosphomevalonate kinase; Identified by match to protein family HMM PF00288; match to protein family HMM PF08544; match to protein family HMM TIGR01220.


ensembl_gene_id: HMPREF9176_1529
symbol: fni
gene_biotype: protein_coding
description:
  Isopentenyl-diphosphate delta-isomerase, type 2; Identified by match to protein family HMM PF01070; match to protein family HMM TIGR02151.


ensembl_gene_id: HMPREF9176_1531
symbol: EFQ57632.1
gene_biotype: protein_coding
description:
  Channel protein, hemolysin III family; Identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065.


ensembl_gene_id: HMPREF9176_1538
symbol: EFQ57399.1
gene_biotype: protein_coding
description:
  Toxin-antitoxin system, toxin component, RelE family; Identified by match to protein family HMM PF05973.


ensembl_gene_id: HMPREF9176_1541
symbol: EFQ57365.1
gene_biotype: protein_coding
description:
  hydroxymethylglutaryl-CoA reductase, degradative; Identified by match to protein family HMM TIGR00532.


ensembl_gene_id: HMPREF9176_1542
symbol: EFQ57714.1
gene_biotype: protein_coding
description:
  Homoserine dehydrogenase; Identified by match to protein family HMM PF00742; match to protein family HMM PF01842; match to protein family HMM PF03447.


ensembl_gene_id: HMPREF9176_1543
symbol: thrB
gene_biotype: protein_coding
description:
  Homoserine kinase; Identified by match to protein family HMM PF00288; match to protein family HMM PF08544; match to protein family HMM TIGR00191.


ensembl_gene_id: HMPREF9176_1544
symbol: rarD
gene_biotype: protein_coding
description:
  Protein RarD; Identified by match to protein family HMM PF00892; match to protein family HMM TIGR00688.


ensembl_gene_id: HMPREF9176_1545
symbol: folC
gene_biotype: protein_coding
description:
  Bifunctional protein FolC; Identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499.


ensembl_gene_id: HMPREF9176_1546
symbol: folE
gene_biotype: protein_coding
description:
  GTP cyclohydrolase I; Identified by match to protein family HMM PF01227; match to protein family HMM TIGR00063.


ensembl_gene_id: HMPREF9176_1547
symbol: folP
gene_biotype: protein_coding
description:
  Dihydropteroate synthase; Identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496.


ensembl_gene_id: HMPREF9176_1548
symbol: folB
gene_biotype: protein_coding
description:
  Dihydroneopterin aldolase; Identified by match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526.


ensembl_gene_id: HMPREF9176_1549
symbol: folK
gene_biotype: protein_coding
description:
  2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase; Identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498.


ensembl_gene_id: HMPREF9176_1550
symbol: murB
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramate dehydrogenase; Identified by match to protein family HMM PF01565; match to protein family HMM PF02873; match to protein family HMM TIGR00179.


ensembl_gene_id: HMPREF9176_1551
symbol: EFQ57441.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08402.


ensembl_gene_id: HMPREF9176_1559
symbol: EFQ57457.1
gene_biotype: protein_coding
description:
  Oxidoreductase, zinc-binding dehydrogenase family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF00107.


ensembl_gene_id: HMPREF9176_1560
symbol: EFQ57377.1
gene_biotype: protein_coding
description:
  Base excision DNA repair protein, HhH-GPD family; Identified by match to protein family HMM PF00730.


ensembl_gene_id: HMPREF9176_1562
symbol: prfA
gene_biotype: protein_coding
description:
  Peptide chain release factor 1; Identified by match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00019.


ensembl_gene_id: HMPREF9176_1563
symbol: prmC
gene_biotype: protein_coding
description:
  protein-(glutamine-N5) methyltransferase, release factor-specific; Identified by match to protein family HMM PF01170; match to protein family HMM PF05175; match to protein family HMM PF05971; match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM TIGR00536; match to protein family HMM TIGR03534.


ensembl_gene_id: HMPREF9176_1566
symbol: glyA
gene_biotype: protein_coding
description:
  Glycine hydroxymethyltransferase; Identified by match to protein family HMM PF00464; match to protein family HMM PF01212; match to protein family HMM PF01276.


ensembl_gene_id: HMPREF9176_1573
symbol: trmFO
gene_biotype: protein_coding
description:
  tRNA:m(5)U-54 methyltransferase; Identified by match to protein family HMM PF01134; match to protein family HMM TIGR00137.


ensembl_gene_id: HMPREF9176_1577
symbol: EFQ57321.1
gene_biotype: protein_coding
description:
  Protein ExsB; Identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364.


ensembl_gene_id: HMPREF9176_1578
symbol: queD
gene_biotype: protein_coding
description:
  Queuosine biosynthesis protein QueD; Identified by match to protein family HMM PF01242; match to protein family HMM TIGR03367.


ensembl_gene_id: HMPREF9176_1579
symbol: queE
gene_biotype: protein_coding
description:
  7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR03365.


ensembl_gene_id: HMPREF9176_1580
symbol: queF
gene_biotype: protein_coding
description:
  preQ(1) synthase; Identified by match to protein family HMM PF01227; match to protein family HMM TIGR03139.


ensembl_gene_id: HMPREF9176_1583
symbol: ffh
gene_biotype: protein_coding
description:
  Signal recognition particle protein; Identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959.


ensembl_gene_id: HMPREF9176_1584
symbol: EFQ57654.1
gene_biotype: protein_coding
description:
  Helix-turn-helix protein, YlxM/p13 family; Identified by match to protein family HMM PF04297; match to protein family HMM PF04967; match to protein family HMM PF08281.


ensembl_gene_id: HMPREF9176_1587
symbol: EFQ57328.1
gene_biotype: protein_coding
description:
  UbiC transcription regulator-associated domain protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07702.


ensembl_gene_id: HMPREF9176_1589
symbol: guaA
gene_biotype: protein_coding
description:
  GMP synthase (glutamine-hydrolyzing) domain protein; Identified by match to protein family HMM PF00117; match to protein family HMM PF00958; match to protein family HMM TIGR00884; match to protein family HMM TIGR00888.


ensembl_gene_id: HMPREF9176_1603
symbol: EFQ57686.1
gene_biotype: protein_coding
description:
  Oxidoreductase, zinc-binding dehydrogenase family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00107.


ensembl_gene_id: HMPREF9176_1605
symbol: sufB
gene_biotype: protein_coding
description:
  FeS assembly protein SufB; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980.


ensembl_gene_id: HMPREF9176_1606
symbol: EFQ57423.1
gene_biotype: protein_coding
description:
  Putative 3-isopropylmalate dehydratase, large subunit; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00330.


ensembl_gene_id: HMPREF9176_1607
symbol: EFQ57552.1
gene_biotype: protein_coding
description:
  Isopropylmalate isomerase large subunit; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.


ensembl_gene_id: HMPREF9176_1611
symbol: EFQ57631.1
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase, beta subunit; Identified by match to protein family HMM PF00268.


ensembl_gene_id: HMPREF9176_1613
symbol: EFQ57334.1
gene_biotype: protein_coding
description:
  Ribonucleoside-diphosphate reductase, alpha subunit; Identified by match to protein family HMM PF00317; match to protein family HMM PF02867; match to protein family HMM PF08343; match to protein family HMM TIGR02506.


ensembl_gene_id: HMPREF9176_1615
symbol: EFQ57555.1
gene_biotype: protein_coding
description:
  Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027; match to protein family HMM PF00325.


ensembl_gene_id: HMPREF9176_1632
symbol: EFQ57661.1
gene_biotype: protein_coding
description:
  LPXTG-motif cell wall anchor domain protein; Identified by match to protein family HMM PF00149; match to protein family HMM PF00746; match to protein family HMM PF02872; match to protein family HMM TIGR01167.


ensembl_gene_id: HMPREF9176_1638
symbol: gdhA
gene_biotype: protein_coding
description:
  Glu/Leu/Phe/Val dehydrogenase, dimerization domain protein; Identified by match to protein family HMM PF00208; match to protein family HMM PF02812.


ensembl_gene_id: HMPREF9176_1643
symbol: EFQ57702.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00005.


ensembl_gene_id: HMPREF9176_1645
symbol: EFQ57642.1
gene_biotype: protein_coding
description:
  tRNA nucleotidyltransferase/poly(A) polymerase family protein; Identified by match to protein family HMM PF01743.


ensembl_gene_id: HMPREF9176_1646
symbol: dapB
gene_biotype: protein_coding
description:
  Dihydrodipicolinate reductase; Identified by match to protein family HMM PF01113; match to protein family HMM PF05173; match to protein family HMM TIGR00036.


ensembl_gene_id: HMPREF9176_1650
symbol: hemH
gene_biotype: protein_coding
description:
  Ferrochelatase; Identified by match to protein family HMM PF00762; match to protein family HMM TIGR00109.


ensembl_gene_id: HMPREF9176_1654
symbol: EFQ57655.1
gene_biotype: protein_coding
description:
  Phosphoglycerate mutase family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00300.


ensembl_gene_id: HMPREF9176_1658
symbol: EFQ57612.1
gene_biotype: protein_coding
description:
  Cof-like hydrolase; Identified by match to protein family HMM PF05116; match to protein family HMM PF08282.


ensembl_gene_id: HMPREF9176_1662
symbol: carB
gene_biotype: protein_coding
description:
  Carbamoyl-phosphate synthase, large subunit; Identified by match to protein family HMM PF00289; match to protein family HMM PF01071; match to protein family HMM PF02142; match to protein family HMM PF02222; match to protein family HMM PF02655; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM TIGR01369.


ensembl_gene_id: HMPREF9176_1663
symbol: carA
gene_biotype: protein_coding
description:
  Carbamoyl-phosphate synthase, small subunit; Identified by match to protein family HMM PF00117; match to protein family HMM PF00988; match to protein family HMM TIGR01368.


ensembl_gene_id: HMPREF9176_1664
symbol: pyrB
gene_biotype: protein_coding
description:
  Aspartate carbamoyltransferase; Identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00670.


ensembl_gene_id: HMPREF9176_1665
symbol: pyrP
gene_biotype: protein_coding
description:
  Putative permease; Identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801.


ensembl_gene_id: HMPREF9176_1667
symbol: EFQ57580.1
gene_biotype: protein_coding
description:
  Pseudouridine synthase, RluA family; Identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005.


ensembl_gene_id: HMPREF9176_1668
symbol: lspA
gene_biotype: protein_coding
description:
  Signal peptidase II; Identified by match to protein family HMM PF01252; match to protein family HMM TIGR00077.


ensembl_gene_id: HMPREF9176_1671
symbol: EFQ57558.1
gene_biotype: protein_coding
description:
  KxYKxGKxW signal domain protein; Identified by match to protein family HMM PF01473; match to protein family HMM TIGR03715.


ensembl_gene_id: HMPREF9176_1680
symbol: rpmA
gene_biotype: protein_coding
description:
  Ribosomal protein L27; Identified by match to protein family HMM PF01016; match to protein family HMM TIGR00062.


ensembl_gene_id: HMPREF9176_1682
symbol: rplU
gene_biotype: protein_coding
description:
  Ribosomal protein L21; Identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061.


ensembl_gene_id: HMPREF9176_1683
symbol: EFQ57456.1
gene_biotype: protein_coding
description:
  Bacterial capsule synthesis protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF09587.


ensembl_gene_id: HMPREF9176_1685
symbol: thiI
gene_biotype: protein_coding
description:
  Thiamine biosynthesis/tRNA modification protein ThiI; Identified by match to protein family HMM PF02568; match to protein family HMM PF02926; match to protein family HMM PF06508; match to protein family HMM TIGR00342.


ensembl_gene_id: HMPREF9176_1689
symbol: gor
gene_biotype: protein_coding
description:
  Glutathione-disulfide reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01421.


ensembl_gene_id: HMPREF9176_1690
symbol: EFQ57571.1
gene_biotype: protein_coding
description:
  Addiction module toxin, Txe/YoeB family; Identified by match to protein family HMM PF05016; match to protein family HMM PF06769; match to protein family HMM TIGR02116; match to protein family HMM TIGR02385.


ensembl_gene_id: HMPREF9176_1692
symbol: uvrC
gene_biotype: protein_coding
description:
  Excinuclease ABC, C subunit; Identified by match to protein family HMM PF01541; match to protein family HMM PF02151; match to protein family HMM PF08459; match to protein family HMM TIGR00194.


ensembl_gene_id: HMPREF9176_1693
symbol: EFQ57602.1
gene_biotype: protein_coding
description:
  KxYKxGKxW signal domain protein; Identified by match to protein family HMM PF00251; match to protein family HMM PF01473; match to protein family HMM PF02012; match to protein family HMM PF08244; match to protein family HMM TIGR03715.


ensembl_gene_id: HMPREF9176_1696
symbol: EFQ57664.1
gene_biotype: protein_coding
description:
  DJ-1/PfpI family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.


ensembl_gene_id: HMPREF9176_1697
symbol: EFQ57479.1
gene_biotype: protein_coding
description:
  ThiJ/PfpI family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.


ensembl_gene_id: HMPREF9176_1698
symbol: EFQ57634.1
gene_biotype: protein_coding
description:
  HAD hydrolase, TIGR02254 family; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR02254.


ensembl_gene_id: HMPREF9176_1722
symbol: EFQ57366.1
gene_biotype: protein_coding
description:
  Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF05656.


ensembl_gene_id: HMPREF9176_1723
symbol: msrB
gene_biotype: protein_coding
description:
  methionine-R-sulfoxide reductase; Identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357.


ensembl_gene_id: HMPREF9176_1725
symbol: murA
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Identified by match to protein family HMM PF00275; match to protein family HMM TIGR01072.


ensembl_gene_id: HMPREF9176_1726
symbol: metK
gene_biotype: protein_coding
description:
  Methionine adenosyltransferase; Identified by match to protein family HMM PF00438; match to protein family HMM PF02772; match to protein family HMM PF02773; match to protein family HMM TIGR01034.


ensembl_gene_id: HMPREF9176_1732
symbol: hsdM
gene_biotype: protein_coding
description:
  Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384; match to protein family HMM TIGR00497.


ensembl_gene_id: HMPREF9176_1734
symbol: EFQ57445.1
gene_biotype: protein_coding
description:
  ATPase family associated with various cellular activities (AAA); Identified by match to protein family HMM PF07724; match to protein family HMM PF07728.


ensembl_gene_id: HMPREF9176_1741
symbol: EFQ57542.1
gene_biotype: protein_coding
description:
  Toxin-antitoxin system, antitoxin component, HicB family; Identified by match to protein family HMM PF03681.


ensembl_gene_id: HMPREF9176_1744
symbol: EFQ57712.1
gene_biotype: protein_coding
description:
  Addiction module toxin, RelE/StbE family; Identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385.


ensembl_gene_id: HMPREF9176_1746
symbol: hsdR
gene_biotype: protein_coding
description:
  Type I site-specific deoxyribonuclease, HsdR family; Identified by match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348.


ensembl_gene_id: HMPREF9176_1748
symbol: EFQ57444.1
gene_biotype: protein_coding
description:
  biotin--[acetyl-CoA-carboxylase] ligase; Identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM PF08279; match to protein family HMM TIGR00121.


ensembl_gene_id: HMPREF9176_1750
symbol: dnaX
gene_biotype: protein_coding
description:
  DNA polymerase III, subunit gamma and tau; Identified by match to protein family HMM PF00004; match to protein family HMM TIGR02397.


ensembl_gene_id: HMPREF9176_1757
symbol: leuD
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase, small subunit; Identified by match to protein family HMM PF00694; match to protein family HMM TIGR00171.


ensembl_gene_id: HMPREF9176_1758
symbol: leuC
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydratase, large subunit; Identified by match to protein family HMM PF00330; match to protein family HMM TIGR00170.


ensembl_gene_id: HMPREF9176_1760
symbol: leuB
gene_biotype: protein_coding
description:
  3-isopropylmalate dehydrogenase; Identified by match to protein family HMM PF00180; match to protein family HMM TIGR00169.


ensembl_gene_id: HMPREF9176_1761
symbol: leuA
gene_biotype: protein_coding
description:
  2-isopropylmalate synthase; Identified by match to protein family HMM PF00682; match to protein family HMM PF08502; match to protein family HMM TIGR00973.


ensembl_gene_id: HMPREF9176_1764
symbol: udk
gene_biotype: protein_coding
description:
  Uridine kinase; Identified by match to protein family HMM PF00485; match to protein family HMM TIGR00235.


ensembl_gene_id: HMPREF9176_1767
symbol: EFQ57452.1
gene_biotype: protein_coding
description:
  Prephenate dehydrogenase; Identified by match to protein family HMM PF02153; match to protein family HMM PF03446.


ensembl_gene_id: HMPREF9176_1768
symbol: aroC
gene_biotype: protein_coding
description:
  Chorismate synthase; Identified by match to protein family HMM PF01264; match to protein family HMM TIGR00033.


ensembl_gene_id: HMPREF9176_1769
symbol: aroB
gene_biotype: protein_coding
description:
  3-dehydroquinate synthase; Identified by match to protein family HMM PF01761; match to protein family HMM TIGR01357.


ensembl_gene_id: HMPREF9176_1770
symbol: aroE
gene_biotype: protein_coding
description:
  Shikimate dehydrogenase; Identified by match to protein family HMM PF01488; match to protein family HMM PF08501; match to protein family HMM TIGR00507.


ensembl_gene_id: HMPREF9176_1771
symbol: aroD
gene_biotype: protein_coding
description:
  3-dehydroquinate dehydratase, type I; Identified by match to protein family HMM PF01487; match to protein family HMM TIGR01093.


ensembl_gene_id: HMPREF9176_1773
symbol: ltaS
gene_biotype: protein_coding
description:
  Arylsulfatase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00884.


ensembl_gene_id: HMPREF9176_1775
symbol: hisE
gene_biotype: protein_coding
description:
  phosphoribosyl-ATP diphosphatase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01503; match to protein family HMM PF03819; match to protein family HMM TIGR03188.


ensembl_gene_id: HMPREF9176_1776
symbol: hisI
gene_biotype: protein_coding
description:
  phosphoribosyl-AMP cyclohydrolase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01502.


ensembl_gene_id: HMPREF9176_1777
symbol: hisF
gene_biotype: protein_coding
description:
  Imidazoleglycerol phosphate synthase, cyclase subunit; Identified by match to protein family HMM PF00977; match to protein family HMM TIGR00735.


ensembl_gene_id: HMPREF9176_1778
symbol: hisA
gene_biotype: protein_coding
description:
  1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase; Identified by match to protein family HMM PF00977; match to protein family HMM TIGR00007.


ensembl_gene_id: HMPREF9176_1779
symbol: hisH
gene_biotype: protein_coding
description:
  Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; Identified by match to protein family HMM PF00117; match to protein family HMM PF01174; match to protein family HMM PF07685; match to protein family HMM TIGR01855.


ensembl_gene_id: HMPREF9176_1781
symbol: serB
gene_biotype: protein_coding
description:
  Phosphoserine phosphatase SerB; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488.


ensembl_gene_id: HMPREF9176_1782
symbol: hisD
gene_biotype: protein_coding
description:
  Histidinol dehydrogenase; Identified by match to protein family HMM PF00815; match to protein family HMM TIGR00069.


ensembl_gene_id: HMPREF9176_1783
symbol: hisG
gene_biotype: protein_coding
description:
  ATP phosphoribosyltransferase; Identified by match to protein family HMM PF01634; match to protein family HMM TIGR00070.


ensembl_gene_id: HMPREF9176_1784
symbol: EFQ57670.1
gene_biotype: protein_coding
description:
  tRNA ligase class II core domain (G, H, P, S and T); Identified by match to protein family HMM PF00587.


ensembl_gene_id: HMPREF9176_1785
symbol: hisC
gene_biotype: protein_coding
description:
  Histidinol-phosphate transaminase; Identified by match to protein family HMM PF00155; match to protein family HMM TIGR01141.


ensembl_gene_id: HMPREF9176_1789
symbol: EFQ57620.1
gene_biotype: protein_coding
description:
  E1-E2 ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494.


ensembl_gene_id: HMPREF9176_1790
symbol: EFQ57372.1
gene_biotype: protein_coding
description:
  Gram-positive signal peptide protein, YSIRK family; Identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF08363; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168.


ensembl_gene_id: HMPREF9176_1793
symbol: pheT
gene_biotype: protein_coding
description:
  phenylalanine--tRNA ligase, beta subunit; Identified by match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472.


ensembl_gene_id: HMPREF9176_1795
symbol: pheS
gene_biotype: protein_coding
description:
  phenylalanine--tRNA ligase, alpha subunit; Identified by match to protein family HMM PF01409; match to protein family HMM PF02912; match to protein family HMM TIGR00468.


ensembl_gene_id: HMPREF9176_1800
symbol: atpC
gene_biotype: protein_coding
description:
  ATP synthase F1, epsilon subunit; Identified by match to protein family HMM PF00401; match to protein family HMM PF02823; match to protein family HMM TIGR01216.


ensembl_gene_id: HMPREF9176_1801
symbol: atpD
gene_biotype: protein_coding
description:
  ATP synthase F1, beta subunit; Identified by match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874; match to protein family HMM TIGR01039.


ensembl_gene_id: HMPREF9176_1802
symbol: atpG
gene_biotype: protein_coding
description:
  ATP synthase F1, gamma subunit; Identified by match to protein family HMM PF00231; match to protein family HMM TIGR01146.


ensembl_gene_id: HMPREF9176_1803
symbol: atpA
gene_biotype: protein_coding
description:
  ATP synthase F1, alpha subunit; Identified by match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874; match to protein family HMM PF09378; match to protein family HMM TIGR00962.


ensembl_gene_id: HMPREF9176_1804
symbol: atpH
gene_biotype: protein_coding
description:
  ATP synthase F1, delta subunit; Identified by match to protein family HMM PF00213; match to protein family HMM TIGR01145.


ensembl_gene_id: HMPREF9176_1805
symbol: atpF
gene_biotype: protein_coding
description:
  ATP synthase F0, B subunit; Identified by match to protein family HMM PF00430; match to protein family HMM TIGR01144.


ensembl_gene_id: HMPREF9176_1806
symbol: atpB
gene_biotype: protein_coding
description:
  ATP synthase F0, A subunit; Identified by match to protein family HMM PF00119; match to protein family HMM TIGR01131.


ensembl_gene_id: HMPREF9176_1808
symbol: EFQ57418.1
gene_biotype: protein_coding
description:
  Putative lipid kinase; Identified by match to protein family HMM PF00781; match to protein family HMM TIGR00147.


ensembl_gene_id: HMPREF9176_1809
symbol: ligA
gene_biotype: protein_coding
description:
  DNA ligase (NAD+); Identified by match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575.


ensembl_gene_id: HMPREF9176_1816
symbol: EFQ57697.1
gene_biotype: protein_coding
description:
  GtrA-like protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF04138.


ensembl_gene_id: HMPREF9176_1817
symbol: budA
gene_biotype: protein_coding
description:
  Alpha-acetolactate decarboxylase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF03306; match to protein family HMM TIGR01252.


ensembl_gene_id: HMPREF9176_1818
symbol: alsS
gene_biotype: protein_coding
description:
  Acetolactate synthase, catabolic; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR02418.


ensembl_gene_id: HMPREF9176_1819
symbol: EFQ57791.1
gene_biotype: protein_coding
description:
  Gram-positive signal peptide protein, YSIRK family; Identified by match to protein family HMM PF04650; match to protein family HMM TIGR01168.


ensembl_gene_id: HMPREF9176_1820
symbol: EFQ58166.1
gene_biotype: protein_coding
description:
  Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.


ensembl_gene_id: HMPREF9176_1829
symbol: EFQ57799.1
gene_biotype: protein_coding
description:
  Dinuclear metal center protein, YbgI family; Identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486.


ensembl_gene_id: HMPREF9176_1832
symbol: EFQ57909.1
gene_biotype: protein_coding
description:
  DnaD domain protein; Identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446.


ensembl_gene_id: HMPREF9176_1833
symbol: metA
gene_biotype: protein_coding
description:
  Homoserine O-succinyltransferase; Identified by match to protein family HMM PF04204; match to protein family HMM TIGR01001.


ensembl_gene_id: HMPREF9176_1834
symbol: apt
gene_biotype: protein_coding
description:
  Adenine phosphoribosyltransferase; Identified by match to protein family HMM PF00156; match to protein family HMM TIGR01090.


ensembl_gene_id: HMPREF9176_1836
symbol: EFQ57834.1
gene_biotype: protein_coding
description:
  O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase; Identified by match to protein family HMM PF01041; match to protein family HMM PF01053; match to protein family HMM TIGR01326.


ensembl_gene_id: HMPREF9176_1841
symbol: EFQ57879.1
gene_biotype: protein_coding
description:
  Type III restriction/modification enzyme, methylase subunit; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.


ensembl_gene_id: HMPREF9176_1844
symbol: pcrA
gene_biotype: protein_coding
description:
  ATP-dependent DNA helicase PcrA; Identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073.


ensembl_gene_id: HMPREF9176_1852
symbol: EFQ58066.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402.


ensembl_gene_id: HMPREF9176_1855
symbol: agcS
gene_biotype: protein_coding
description:
  Amino acid carrier protein; Identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835.


ensembl_gene_id: HMPREF9176_1856
symbol: EFQ57869.1
gene_biotype: protein_coding
description:
  Cation diffusion facilitator family transporter; Identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297.


ensembl_gene_id: HMPREF9176_1860
symbol: EFQ57818.1
gene_biotype: protein_coding
description:
  Putative alkylphosphonate utilization operon protein PhnA; Identified by match to protein family HMM PF03831; match to protein family HMM PF08274; match to protein family HMM TIGR00686.


ensembl_gene_id: HMPREF9176_1864
symbol: EFQ58089.1
gene_biotype: protein_coding
description:
  Mannitol dehydrogenase domain protein; Identified by match to protein family HMM PF01232; match to protein family HMM PF08125.


ensembl_gene_id: HMPREF9176_1865
symbol: mtlF
gene_biotype: protein_coding
description:
  Mannitol-specific phosphotransferase enzyme IIA component; Identified by match to protein family HMM PF00359.


ensembl_gene_id: HMPREF9176_1867
symbol: mtlA
gene_biotype: protein_coding
description:
  PTS system, mannitol-specific IIC component; Identified by match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00851.


ensembl_gene_id: HMPREF9176_1869
symbol: glmS
gene_biotype: protein_coding
description:
  Glutamine-fructose-6-phosphate transaminase (isomerizing); Identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135.


ensembl_gene_id: HMPREF9176_1871
symbol: pyk
gene_biotype: protein_coding
description:
  Pyruvate kinase; Identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM PF03328; match to protein family HMM TIGR01064.


ensembl_gene_id: HMPREF9176_1872
symbol: pfkA
gene_biotype: protein_coding
description:
  6-phosphofructokinase; Identified by match to protein family HMM PF00365; match to protein family HMM TIGR02482.


ensembl_gene_id: HMPREF9176_1873
symbol: dnaE
gene_biotype: protein_coding
description:
  DNA polymerase III, alpha subunit; Identified by match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594.


ensembl_gene_id: HMPREF9176_1874
symbol: EFQ57999.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, GntR family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00392.


ensembl_gene_id: HMPREF9176_1886
symbol: ilvE
gene_biotype: protein_coding
description:
  Branched-chain-amino-acid transaminase; Identified by match to protein family HMM PF01063; match to protein family HMM TIGR01123.


ensembl_gene_id: HMPREF9176_1887
symbol: parC
gene_biotype: protein_coding
description:
  DNA topoisomerase IV, A subunit; Identified by match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01061.


ensembl_gene_id: HMPREF9176_1890
symbol: parE
gene_biotype: protein_coding
description:
  DNA topoisomerase IV, B subunit; Identified by match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01058.


ensembl_gene_id: HMPREF9176_1891
symbol: plsY
gene_biotype: protein_coding
description:
  Acyl-phosphate glycerol 3-phosphate acyltransferase; Identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023.


ensembl_gene_id: HMPREF9176_1892
symbol: EFQ57982.1
gene_biotype: protein_coding
description:
  5'-nucleotidase, C-terminal domain protein; Identified by match to protein family HMM PF00149; match to protein family HMM PF02872.


ensembl_gene_id: HMPREF9176_1893
symbol: pyrC
gene_biotype: protein_coding
description:
  Dihydroorotase; Identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR00857.


ensembl_gene_id: HMPREF9176_1894
symbol: ung
gene_biotype: protein_coding
description:
  uracil-DNA glycosylase; Identified by match to protein family HMM PF03167; match to protein family HMM TIGR00628.


ensembl_gene_id: HMPREF9176_1897
symbol: pyrE
gene_biotype: protein_coding
description:
  Orotate phosphoribosyltransferase; Identified by match to protein family HMM PF00156; match to protein family HMM TIGR00336.


ensembl_gene_id: HMPREF9176_1898
symbol: pyrF
gene_biotype: protein_coding
description:
  Orotidine 5'-phosphate decarboxylase; Identified by match to protein family HMM PF00215; match to protein family HMM TIGR01740.


ensembl_gene_id: HMPREF9176_1901
symbol: pyrD
gene_biotype: protein_coding
description:
  Dihydroorotate dehydrogenase 1B; Identified by match to protein family HMM PF01180; match to protein family HMM TIGR01037.


ensembl_gene_id: HMPREF9176_1902
symbol: pyrK
gene_biotype: protein_coding
description:
  Dihydroorotate dehydrogenase, electron transfer subunit; Identified by match to protein family HMM PF00175; match to protein family HMM PF00970.


ensembl_gene_id: HMPREF9176_1905
symbol: rfbB
gene_biotype: protein_coding
description:
  dTDP-glucose 4,6-dehydratase; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181.


ensembl_gene_id: HMPREF9176_1907
symbol: rfbA
gene_biotype: protein_coding
description:
  Glucose-1-phosphate thymidylyltransferase; Identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207.


ensembl_gene_id: HMPREF9176_1909
symbol: EFQ58123.1
gene_biotype: protein_coding
description:
  ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.


ensembl_gene_id: HMPREF9176_1912
symbol: mutE
gene_biotype: protein_coding
description:
  Lantibiotic protection ABC transporter permease subunit, MutE/EpiE family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.


ensembl_gene_id: HMPREF9176_1913
symbol: mutF
gene_biotype: protein_coding
description:
  Mutacin ABC transporter, ATP-binding protein MutF; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR03740.


ensembl_gene_id: HMPREF9176_1916
symbol: deoD
gene_biotype: protein_coding
description:
  Purine nucleoside phosphorylase; Identified by match to protein family HMM PF01048; match to protein family HMM TIGR00107.


ensembl_gene_id: HMPREF9176_1919
symbol: EFQ57864.1
gene_biotype: protein_coding
description:
  Purine nucleoside phosphorylase I, inosine and guanosine-specific; Identified by match to protein family HMM PF00896; match to protein family HMM TIGR01697; match to protein family HMM TIGR01700.


ensembl_gene_id: HMPREF9176_1922
symbol: deoB
gene_biotype: protein_coding
description:
  Phosphopentomutase; Identified by match to protein family HMM PF01676; match to protein family HMM PF08342; match to protein family HMM TIGR01696.


ensembl_gene_id: HMPREF9176_1923
symbol: rpiA
gene_biotype: protein_coding
description:
  Ribose 5-phosphate isomerase A; Identified by match to protein family HMM PF06026; match to protein family HMM TIGR00021.


ensembl_gene_id: HMPREF9176_1924
symbol: trmE
gene_biotype: protein_coding
description:
  tRNA modification GTPase TrmE; Identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR00450.


ensembl_gene_id: HMPREF9176_1928
symbol: pepV
gene_biotype: protein_coding
description:
  Dipeptidase PepV; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01886; match to protein family HMM TIGR01887.


ensembl_gene_id: HMPREF9176_1931
symbol: map
gene_biotype: protein_coding
description:
  Methionine aminopeptidase, type I; Identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500.


ensembl_gene_id: HMPREF9176_1932
symbol: EFQ57917.1
gene_biotype: protein_coding
description:
  DRTGG domain protein; Identified by match to protein family HMM PF00571; match to protein family HMM PF03061; match to protein family HMM PF07085.


ensembl_gene_id: HMPREF9176_1935
symbol: EFQ58141.1
gene_biotype: protein_coding
description:
  DHHA1 domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02272.


ensembl_gene_id: HMPREF9176_1936
symbol: EFQ58001.1
gene_biotype: protein_coding
description:
  Putative single-stranded-DNA-specific exonuclease RecJ; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01368.


ensembl_gene_id: HMPREF9176_1937
symbol: EFQ58040.1
gene_biotype: protein_coding
description:
  Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106.


ensembl_gene_id: HMPREF9176_1938
symbol: rnz
gene_biotype: protein_coding
description:
  Ribonuclease Z; Identified by match to protein family HMM PF00753; match to protein family HMM TIGR02651.


ensembl_gene_id: HMPREF9176_1940
symbol: hflX
gene_biotype: protein_coding
description:
  GTP-binding protein HflX; Identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR03156.


ensembl_gene_id: HMPREF9176_1943
symbol: gyrB
gene_biotype: protein_coding
description:
  DNA gyrase, B subunit; Identified by match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01059.


ensembl_gene_id: HMPREF9176_1947
symbol: EFQ58179.1
gene_biotype: protein_coding
description:
  Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by glimmer; putative.


ensembl_gene_id: HMPREF9176_1949
symbol: ilvD
gene_biotype: protein_coding
description:
  Dihydroxy-acid dehydratase; Identified by match to protein family HMM PF00920; match to protein family HMM TIGR00110.


ensembl_gene_id: HMPREF9176_1955
symbol: rplS
gene_biotype: protein_coding
description:
  Ribosomal protein L19; Identified by match to protein family HMM PF01245; match to protein family HMM TIGR01024.


ensembl_gene_id: HMPREF9176_1957
symbol: EFQ58079.1
gene_biotype: protein_coding
description:
  Chorismate mutase; Identified by match to protein family HMM PF01817; match to protein family HMM TIGR01805.


ensembl_gene_id: HMPREF9176_1959
symbol: EFQ58015.1
gene_biotype: protein_coding
description:
  SNARE-like domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF09335.


ensembl_gene_id: HMPREF9176_1963
symbol: EFQ58094.1
gene_biotype: protein_coding
description:
  Flavodoxin; Identified by match to protein family HMM PF00258; match to protein family HMM PF07972; match to protein family HMM TIGR01753.


ensembl_gene_id: HMPREF9176_1964
symbol: add
gene_biotype: protein_coding
description:
  Adenosine deaminase; Identified by match to protein family HMM PF00962; match to protein family HMM TIGR01430.


ensembl_gene_id: HMPREF9176_1965
symbol: EFQ57816.1
gene_biotype: protein_coding
description:
  Glutathione S-transferase, C-terminal domain protein; Identified by match to protein family HMM PF00043.


ensembl_gene_id: HMPREF9176_1968
symbol: EFQ58072.1
gene_biotype: protein_coding
description:
  Flavin reductase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03358.


ensembl_gene_id: HMPREF9176_1972
symbol: EFQ57921.1
gene_biotype: protein_coding
description:
  Methyltransferase domain protein; Identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242.


ensembl_gene_id: HMPREF9176_1973
symbol: EFQ58229.1
gene_biotype: protein_coding
description:
  ABC transporter, substrate-binding protein; Identified by match to protein family HMM PF01297; match to protein family HMM PF09223.


ensembl_gene_id: HMPREF9176_1978
symbol: EFQ57826.1
gene_biotype: protein_coding
description:
  Putative endoribonuclease L-PSP; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.


ensembl_gene_id: HMPREF9176_1979
symbol: EFQ57903.1
gene_biotype: protein_coding
description:
  3-dehydroquinate synthase; Identified by match to protein family HMM PF00465; match to protein family HMM PF01761.


ensembl_gene_id: HMPREF9176_1982
symbol: asnS
gene_biotype: protein_coding
description:
  asparagine--tRNA ligase; Identified by match to protein family HMM PF00152; match to protein family HMM PF00587; match to protein family HMM PF01336; match to protein family HMM TIGR00457.


ensembl_gene_id: HMPREF9176_1986
symbol: EFQ57984.1
gene_biotype: protein_coding
description:
  Putative DnaQ family exonuclease/DinG family helicase; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01407.


ensembl_gene_id: HMPREF9176_1992
symbol: EFQ58053.1
gene_biotype: protein_coding
description:
  Bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Identified by match to protein family HMM PF02219; match to protein family HMM PF02574.


ensembl_gene_id: HMPREF9176_1993
symbol: metE
gene_biotype: protein_coding
description:
  5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01717; match to protein family HMM PF08267; match to protein family HMM TIGR01371.


ensembl_gene_id: HMPREF9176_1994
symbol: EFQ57805.1
gene_biotype: protein_coding
description:
  Putative 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative.


ensembl_gene_id: HMPREF9176_1995
symbol: EFQ58177.1
gene_biotype: protein_coding
description:
  Putative potassium/sodium efflux P-type ATPase, fungal-type; Identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494.


ensembl_gene_id: HMPREF9176_2006
symbol: tpiA
gene_biotype: protein_coding
description:
  Triose-phosphate isomerase; Identified by match to protein family HMM PF00121; match to protein family HMM TIGR00419.


ensembl_gene_id: HMPREF9176_2009
symbol: gapN
gene_biotype: protein_coding
description:
  Glyceraldehyde-3-phosphate dehydrogenase (NADP+); Identified by match to protein family HMM PF00171.


ensembl_gene_id: HMPREF9176_2010
symbol: ptsP
gene_biotype: protein_coding
description:
  Phosphoenolpyruvate-protein phosphotransferase; Identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417.


ensembl_gene_id: HMPREF9176_2011
symbol: ptsH
gene_biotype: protein_coding
description:
  Phosphocarrier protein HPr; Identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003.


ensembl_gene_id: HMPREF9176_2012
symbol: EFQ58217.1
gene_biotype: protein_coding
description:
  Glutaredoxin; Identified by match to protein family HMM PF00462; match to protein family HMM TIGR02194.


ensembl_gene_id: HMPREF9176_2017
symbol: argD
gene_biotype: protein_coding
description:
  Aminotransferase, acetylornithine/succinylornithine family; Identified by match to protein family HMM PF00202; match to protein family HMM TIGR00707.


ensembl_gene_id: HMPREF9176_2018
symbol: argB
gene_biotype: protein_coding
description:
  Acetylglutamate kinase; Identified by match to protein family HMM PF00696; match to protein family HMM TIGR00761.


ensembl_gene_id: HMPREF9176_2019
symbol: argJ
gene_biotype: protein_coding
description:
  Glutamate N-acetyltransferase/amino-acid acetyltransferase; Identified by match to protein family HMM PF01960; match to protein family HMM TIGR00120.


ensembl_gene_id: HMPREF9176_2020
symbol: argC
gene_biotype: protein_coding
description:
  N-acetyl-gamma-glutamyl-phosphate reductase; Identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01850.


ensembl_gene_id: HMPREF9176_2022
symbol: recN
gene_biotype: protein_coding
description:
  DNA repair protein RecN; Identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634.


ensembl_gene_id: HMPREF9176_2023
symbol: EFQ57998.1
gene_biotype: protein_coding
description:
  Arginine repressor, C-terminal domain protein; Identified by match to protein family HMM PF01316; match to protein family HMM PF02863.


ensembl_gene_id: HMPREF9176_2024
symbol: rrmJ
gene_biotype: protein_coding
description:
  Putative ribosomal RNA large subunit methyltransferase J; Identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478.


ensembl_gene_id: HMPREF9176_2026
symbol: xseB
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII, small subunit; Identified by match to protein family HMM PF02609; match to protein family HMM TIGR01280.


ensembl_gene_id: HMPREF9176_2027
symbol: xseA
gene_biotype: protein_coding
description:
  Exodeoxyribonuclease VII, large subunit; Identified by match to protein family HMM PF01336; match to protein family HMM PF02601; match to protein family HMM TIGR00237.


ensembl_gene_id: HMPREF9176_2034
symbol: EFQ57928.1
gene_biotype: protein_coding
description:
  GIY-YIG catalytic domain protein; Identified by match to protein family HMM PF01541; match to protein family HMM PF05175.


ensembl_gene_id: HMPREF9176_2035
symbol: EFQ58055.1
gene_biotype: protein_coding
description:
  LysR substrate binding domain protein; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466.


ensembl_gene_id: HMPREF9176_2036
symbol: EFQ57938.1
gene_biotype: protein_coding
description:
  Malic enzyme, NAD binding domain protein; Identified by match to protein family HMM PF00390; match to protein family HMM PF03949.


ensembl_gene_id: HMPREF9176_2037
symbol: EFQ58033.1
gene_biotype: protein_coding
description:
  Bacterial sodium:citrate symporter; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03390.


ensembl_gene_id: HMPREF9176_2040
symbol: EFQ57890.1
gene_biotype: protein_coding
description:
  Putative cross-wall-targeting lipoprotein signal; Identified by match to protein family HMM PF00746; match to protein family HMM PF06696; match to protein family HMM PF08363; match to protein family HMM TIGR01167; match to protein family HMM TIGR03726.


ensembl_gene_id: HMPREF9176_2043
symbol: EFQ58044.1
gene_biotype: protein_coding
description:
  Putative proton-coupled thiamine transporter YuaJ; Identified by match to protein family HMM PF09515; match to protein family HMM TIGR02357.


ensembl_gene_id: HMPREF9176_2050
symbol: EFQ57913.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, MarR family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF01047; match to protein family HMM PF01978.


ensembl_gene_id: HMPREF9176_2051
symbol: alaS
gene_biotype: protein_coding
description:
  alanine--tRNA ligase; Identified by match to protein family HMM PF01411; match to protein family HMM PF02272; match to protein family HMM PF07973; match to protein family HMM TIGR00344.


ensembl_gene_id: HMPREF9176_2055
symbol: EFQ58063.1
gene_biotype: protein_coding
description:
  Methyltransferase domain protein; Identified by match to protein family HMM PF01596; match to protein family HMM PF05175; match to protein family HMM PF08241.


ensembl_gene_id: HMPREF9176_2059
symbol: EFQ57861.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, effector binding domain protein; Identified by match to protein family HMM PF00165; match to protein family HMM PF06445.


ensembl_gene_id: HMPREF9176_2061
symbol: trpA
gene_biotype: protein_coding
description:
  Tryptophan synthase, alpha subunit; Identified by match to protein family HMM PF00290; match to protein family HMM TIGR00262.


ensembl_gene_id: HMPREF9176_2062
symbol: trpB
gene_biotype: protein_coding
description:
  Tryptophan synthase, beta subunit; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR00263.


ensembl_gene_id: HMPREF9176_2065
symbol: trpD
gene_biotype: protein_coding
description:
  Anthranilate phosphoribosyltransferase; Identified by match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM TIGR01245.


ensembl_gene_id: HMPREF9176_2066
symbol: pabA
gene_biotype: protein_coding
description:
  Glutamine amidotransferase, class I; Identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566.


ensembl_gene_id: HMPREF9176_2067
symbol: trpE
gene_biotype: protein_coding
description:
  Anthranilate synthase component I; Identified by match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00564.


ensembl_gene_id: HMPREF9176_2074
symbol: EFQ57867.1
gene_biotype: protein_coding
description:
  Conserved hypothetical protein YidD; Identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278.


ensembl_gene_id: HMPREF9176_2076
symbol: scpB
gene_biotype: protein_coding
description:
  Segregation and condensation protein B; Identified by match to protein family HMM PF04079; match to protein family HMM TIGR00281.


ensembl_gene_id: HMPREF9176_2078
symbol: xerD
gene_biotype: protein_coding
description:
  Site-specific tyrosine recombinase XerD-like protein; Identified by match to protein family HMM PF00589; match to protein family HMM PF02899.


ensembl_gene_id: HMPREF9176_2081
symbol: rdgB
gene_biotype: protein_coding
description:
  Non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; Identified by match to protein family HMM PF01725; match to protein family HMM TIGR00042.


ensembl_gene_id: HMPREF9176_2082
symbol: murI
gene_biotype: protein_coding
description:
  Glutamate racemase; Identified by match to protein family HMM PF01177; match to protein family HMM TIGR00067.


ensembl_gene_id: HMPREF9176_2084
symbol: EFQ58059.1
gene_biotype: protein_coding
description:
  Putative diaminopimelate decarboxylase; Identified by match to protein family HMM PF00278; match to protein family HMM PF02784.


ensembl_gene_id: HMPREF9176_2085
symbol: tuf
gene_biotype: protein_coding
description:
  Translation elongation factor Tu; Identified by match to protein family HMM PF00009; match to protein family HMM PF03143; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00485.


ensembl_gene_id: HMPREF9176_2092
symbol: smc
gene_biotype: protein_coding
description:
  Chromosome segregation protein SMC; Identified by match to protein family HMM PF02463; match to protein family HMM PF06470; match to protein family HMM TIGR02168.


ensembl_gene_id: HMPREF9176_2093
symbol: rnc
gene_biotype: protein_coding
description:
  Ribonuclease III; Identified by match to protein family HMM PF00035; match to protein family HMM PF00636; match to protein family HMM TIGR02191.


ensembl_gene_id: HMPREF9176_2094
symbol: pflA
gene_biotype: protein_coding
description:
  Pyruvate formate-lyase 1-activating enzyme; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR02493.


ensembl_gene_id: HMPREF9176_2096
symbol: EFQ57813.1
gene_biotype: protein_coding
description:
  Putative phage tail component domain protein; Identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471.


ensembl_gene_id: HMPREF9176_2100
symbol: EFQ57839.1
gene_biotype: protein_coding
description:
  ISSag8, transposase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.


ensembl_gene_id: HMPREF9176_2113
symbol: EFQ58112.1
gene_biotype: protein_coding
description:
  Radical SAM protein, TIGR01212 family; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212.


ensembl_gene_id: HMPREF9176_2122
symbol: EFQ57933.1
gene_biotype: protein_coding
description:
  Putative RNA methyltransferase, TrmH family, group 2; Identified by match to protein family HMM PF00588.


ensembl_gene_id: HMPREF9176_2123
symbol: trkA
gene_biotype: protein_coding
description:
  Potassium transporter peripheral membrane component; Identified by match to protein family HMM PF02080; match to protein family HMM PF02254.


ensembl_gene_id: HMPREF9176_2126
symbol: EFQ57967.1
gene_biotype: protein_coding
description:
  Transcriptional regulator, MerR family; Identified by match to protein family HMM PF00376; match to protein family HMM PF09278.


ensembl_gene_id: HMPREF9176_2128
symbol: EFQ57874.1
gene_biotype: protein_coding
description:
  PAS domain S-box protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.


ensembl_gene_id: HMPREF9176_2142
symbol: valS
gene_biotype: protein_coding
description:
  valine--tRNA ligase; Identified by match to protein family HMM PF00133; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00422.


ensembl_gene_id: HMPREF9176_2149
symbol: EFQ57782.1
gene_biotype: protein_coding
description:
  Transporter, auxin efflux carrier (AEC) family protein; Identified by match to protein family HMM PF03547.


ensembl_gene_id: HMPREF9176_2153
symbol: glk
gene_biotype: protein_coding
description:
  ROK family protein; Identified by match to protein family HMM PF00480; match to protein family HMM TIGR00744.


ensembl_gene_id: HMPREF9176_2156
symbol: EFQ57954.1
gene_biotype: protein_coding
description:
  Bacterial peptidase A24, N-terminal domain protein; Identified by match to protein family HMM PF01478; match to protein family HMM PF06750.


ensembl_gene_id: HMPREF9176_2159
symbol: EFQ57898.1
gene_biotype: protein_coding
description:
  YjeF domain protein; Identified by match to protein family HMM PF01256; match to protein family HMM TIGR00196.


ensembl_gene_id: HMPREF9176_2160
symbol: folD
gene_biotype: protein_coding
description:
  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain protein; Identified by match to protein family HMM PF00763; match to protein family HMM PF02882.


ensembl_gene_id: HMPREF9176_2162
symbol: feoB
gene_biotype: protein_coding
description:
  Ferrous iron transport protein B; Identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437.


ensembl_gene_id: HMPREF9176_2164
symbol: EFQ58012.1
gene_biotype: protein_coding
description:
  Putative phosphate ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.


ensembl_gene_id: HMPREF9176_2170
symbol: clpC-2
gene_biotype: protein_coding
description:
  ATPase family associated with various cellular activities (AAA); Identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF07724; match to protein family HMM PF07728.


ensembl_gene_id: HMPREF9176_2173
symbol: ileS
gene_biotype: protein_coding
description:
  isoleucine--tRNA ligase; Identified by match to protein family HMM PF00133; match to protein family HMM PF06827; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00392.


ensembl_gene_id: HMPREF9176_2178
symbol: EFQ57994.1
gene_biotype: protein_coding
description:
  Pyridoxal phosphate enzyme, YggS family; Identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044.


ensembl_gene_id: HMPREF9176_2179
symbol: ftsZ
gene_biotype: protein_coding
description:
  Cell division protein FtsZ; Identified by match to protein family HMM PF00091; match to protein family HMM PF03953; match to protein family HMM TIGR00065.


ensembl_gene_id: HMPREF9176_2180
symbol: ftsA
gene_biotype: protein_coding
description:
  Cell division protein FtsA; Identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174.


ensembl_gene_id: HMPREF9176_2181
symbol: mtnN
gene_biotype: protein_coding
description:
  MTA/SAH nucleosidase; Identified by match to protein family HMM PF01048; match to protein family HMM TIGR01704.


ensembl_gene_id: HMPREF9176_2184
symbol: glmU
gene_biotype: protein_coding
description:
  UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase; Identified by match to protein family HMM PF00483; match to protein family HMM TIGR01173.


ensembl_gene_id: HMPREF9176_2187
symbol: EFQ58137.1
gene_biotype: protein_coding
description:
  Oxidoreductase, NAD-binding domain protein; Identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894.


ensembl_gene_id: HMPREF9176_2193
symbol: metG
gene_biotype: protein_coding
description:
  methionine--tRNA ligase; Identified by match to protein family HMM PF01588; match to protein family HMM PF09334; match to protein family HMM TIGR00398; match to protein family HMM TIGR00399.


ensembl_gene_id: HMPREF9176_2199
symbol: ftsY
gene_biotype: protein_coding
description:
  Signal recognition particle-docking protein FtsY; Identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064.


ensembl_gene_id: HMPREF9176_2202
symbol: EFQ58102.1
gene_biotype: protein_coding
description:
  XFP C-terminal domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF09363.


ensembl_gene_id: HMPREF9176_2203
symbol: xfp
gene_biotype: protein_coding
description:
  D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF03894; match to protein family HMM PF09364.


ensembl_gene_id: HMPREF9176_2210
symbol: EFQ58076.1
gene_biotype: protein_coding
description:
  LPXTG-motif cell wall anchor domain protein; Identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167.


ensembl_gene_id: HMPREF9176_2218
symbol: thrS
gene_biotype: protein_coding
description:
  threonine--tRNA ligase; Identified by match to protein family HMM PF00587; match to protein family HMM PF02824; match to protein family HMM PF03129; match to protein family HMM PF07973; match to protein family HMM TIGR00418.


ensembl_gene_id: HMPREF9176_2225
symbol: ccpA
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF00356; match to protein family HMM PF00532; match to protein family HMM TIGR01481.


ensembl_gene_id: HMPREF9176_2235
symbol: rnr
gene_biotype: protein_coding
description:
  Identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063.


ensembl_gene_id: HMPREF9176_2236
symbol: secG
gene_biotype: protein_coding
description:
  Preprotein translocase, SecG subunit; Identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810.


ensembl_gene_id: HMPREF9176_2239
symbol: coaE
gene_biotype: protein_coding
description:
  dephospho-CoA kinase; Identified by match to protein family HMM PF01121; match to protein family HMM TIGR00152.


ensembl_gene_id: HMPREF9176_2240
symbol: mutM
gene_biotype: protein_coding
description:
  DNA-formamidopyrimidine glycosylase; Identified by match to protein family HMM PF01149; match to protein family HMM PF06827; match to protein family HMM PF06831; match to protein family HMM TIGR00577.


ensembl_gene_id: HMPREF9176_2245
symbol: EFQ58242.1
gene_biotype: protein_coding
description:
  Peptidase family M13; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF01431.


ensembl_gene_id: HMPREF9176_2248
symbol: era
gene_biotype: protein_coding
description:
  Ribosome biogenesis GTPase Era; Identified by match to protein family HMM PF01926; match to protein family HMM PF07650; match to protein family HMM TIGR00231; match to protein family HMM TIGR00436.


ensembl_gene_id: HMPREF9176_2250
symbol: ybeY
gene_biotype: protein_coding
description:
  Translation metalloprotein YbeY; Identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043.


ensembl_gene_id: HMPREF9176_2254
symbol: msrA
gene_biotype: protein_coding
description:
  Peptide-methionine (S)-S-oxide reductase; Identified by match to protein family HMM PF01625; match to protein family HMM TIGR00401.


ensembl_gene_id: HMPREF9176_2262
symbol: EFQ57792.1
gene_biotype: protein_coding
description:
  Cell envelope-like function transcriptional attenuator common domain protein; Identified by match to protein family HMM PF02916; match to protein family HMM PF03816; match to protein family HMM TIGR00350.


ensembl_gene_id: HMPREF9176_2272
symbol: EFQ58230.1
gene_biotype: protein_coding
description:
  Putative tRNA (cmo5U34)-methyltransferase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative.


ensembl_gene_id: HMPREF9176_2274
symbol: luxS-2
gene_biotype: protein_coding
description:
  S-ribosylhomocysteinase LuxS; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.


ensembl_gene_id: HMPREF9176_2278
symbol: upp
gene_biotype: protein_coding
description:
  Uracil phosphoribosyltransferase; Identified by match to protein family HMM PF00156; match to protein family HMM TIGR01091.


ensembl_gene_id: HMPREF9176_2282
symbol: EFQ57934.1
gene_biotype: protein_coding
description:
  Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943; match to protein family HMM PF03023.


ensembl_gene_id: HMPREF9176_2283
symbol: murE
gene_biotype: protein_coding
description:
  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase; Identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01085.


ensembl_gene_id: HMPREF9176_2286
symbol: EFQ57854.1
gene_biotype: protein_coding
description:
  Iron chelate uptake ABC transporter, FeCT family, permease protein; Identified by match to protein family HMM PF01032.


ensembl_gene_id: HMPREF9176_2287
symbol: EFQ58191.1
gene_biotype: protein_coding
description:
  Iron chelate uptake ABC transporter, FeCT family, permease protein; Identified by match to protein family HMM PF01032; match to protein family HMM PF02653.


ensembl_gene_id: HMPREF9176_2289
symbol: EFQ57895.1
gene_biotype: protein_coding
description:
  ABC 3 transport family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00950.


ensembl_gene_id: HMPREF9176_2290
symbol: EFQ58011.1
gene_biotype: protein_coding
description:
  ABC transporter, ATP-binding protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00005.


ensembl_gene_id: HMPREF9176_2291
symbol: EFQ57947.1
gene_biotype: protein_coding
description:
  Iron compound ABC transporter, ATP-binding protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.


ensembl_gene_id: HMPREF9176_2292
symbol: fimA
gene_biotype: protein_coding
description:
  Manganese ABC transporter substrate-binding lipoprotein; Identified by match to protein family HMM PF01297.


