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July 30, 2022: iDEP updated to v0.96. Fixed a bug in the DEG1 tab regarding the different comparisons. iDEP now works even when factors have more than two levels. The downside is that some comparisons for non-reference levels are difficult to make. Users have to change the reference levels and rerun.
April 25, 2022: Gene ID conversion is much faster now, even when species has to be guessed. So is the DEG2 tab.
April 24, 2022: Add a tab for visualizing the fold-change of all genes in all KEGG diagrams across all comparisons!
Feb. 11, 2022: Like iDEP but your genome is not covered? Customized iDEP is now available. Its database includes several custom genomes requested by users. To request to add new species/genome, fill in this Form.
Email Jenny for questions. Dr. Ge is notorisly slow in responding to emails.
If it is slow, restart from a new browser window (not a new tab). You will be assigned to a new worker computer.
iDEP has not been thoroughly tested. Please let us know if you find any issue/bug.
iDEP: Integrated Differential Expression and Pathway analysis

