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All new iDEP 1.0 released in testing mode!
Please send us a brief email to show your support.
If you state your general research area and how iDEP makes you more productive, we can use it as a support letter when we apply for the next round of funding. Hundreds of strong, enthusiastic letters sent to us in 2019 were essential when we applied for the current grant from NIH/NHGRI (R01HG010805), which expires in 20 months. Your letters will help sustain and improve this service.
If this server is busy, please use a mirror sever http://ge-lab.org/idep/ hosted by NSF-funded JetStream2.
July 30, 2022: iDEP updated to v0.96. Fixed a bug in the DEG1 tab regarding the different comparisons. iDEP now works even when factors have more than two levels. The downside is that some comparisons for non-reference levels are difficult to make. Users have to change the reference levels and rerun.
April 25, 2022: Gene ID conversion is much faster now, even when species has to be guessed. So is the DEG2 tab.
April 24, 2022: Add a tab for visualizing the fold-change of all genes in all KEGG diagrams across all comparisons!
Feb. 11, 2022: Like iDEP but your genome is not covered? Customized iDEP is now available. Its database includes several custom genomes requested by users. To request to add new species/genome, fill in this Form.
Email Jenny for questions. Follow Dr Ge on Twitter for updates.
If it is slow, restart from a new browser window (not a new tab). You will be assigned to a new worker computer.
iDEP has not been thoroughly tested. Please let us know if you find any issue/bug.